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Pregenerated sensors for PCDHA9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000103770

Ensembl transcript IDs: ENSMUST00000115659.6

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp ACATCCATCAGCGACGCCTCCCTGCGGGAGGAGTTGGGCAACCCCTaGGAAGAAGCTTTTGGCACCTGGCCGTTCTCCACCAGGGACACC +
Preference number: 5 (lower is better)
Translates to: TSISDASLREELGNP*EEAFGTWPFSTRDT
Trigger: GGTGTCCCTGGTGGAGAACGGCCAGGTGCCAAAAGCTTCTTCCCAGGGGTTGCCCAACTCCTCCCGCAGGGAGGCGTCGCTGATGGATGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115659.6
CDS CCA 90 bp TGTGCATGCCTGCTCTTAGCGAGGCAGAGTAGCGCCAGTCAGGGTTaGGCTGCCGGGGCTTTCCGGGCACGTCTCCTCCAACAGAATGAC +
Preference number: 5 (lower is better)
Translates to: CACLLLARQSSASQG*AAGAFRARLLQQND
Trigger: GTCATTCTGTTGGAGGAGACGTGCCCGGAAAGCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAGGCATGCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115659.6
CDS TCA 90 bp GACCGCGAAACAAGCTGGCTAAATTCGCCAGCAGGTCCACCTGACTaGTGTCCGAGCAGCGTGGGCGGATTGTCATTCTCATCCTGCACA +
Preference number: 5 (lower is better)
Translates to: DRETSWLNSPAGPPD*CPSSVGGLSFSSCT
Trigger: TGTGCAGGATGAGAATGACAATCCGCCCACGCTGCTCGGACATCAGTCAGGTGGACCTGCTGGCGAATTTAGCCAGCTTGTTTCGCGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115659.6
CDS CCA 72 bp AGCGACGCCTCCCTGCGGGAGGAGTTGGGCAACCCCTaGGAAGAAGCTTTTGGCACCTGGCCGTTCTCCACC +
Preference number: 6 (lower is better)
Translates to: SDASLREELGNP*EEAFGTWPFST
Trigger: GGTGGAGAACGGCCAGGTGCCAAAAGCTTCTTCCCAGGGGTTGCCCAACTCCTCCCGCAGGGAGGCGTCGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115659.6
CDS CCA 72 bp CTGCTCTTAGCGAGGCAGAGTAGCGCCAGTCAGGGTTaGGCTGCCGGGGCTTTCCGGGCACGTCTCCTCCAA +
Preference number: 6 (lower is better)
Translates to: LLLARQSSASQG*AAGAFRARLLQ
Trigger: TTGGAGGAGACGTGCCCGGAAAGCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115659.6
CDS CAA 90 bp ACGCCTCCCTGCGGGAGGAGTTGGGCAACCCCTGGGAAGAAGCTTTaGGCACCTGGCCGTTCTCCACCAGGGACACCAAAACGGTGGCAG +
Preference number: 6 (lower is better)
Translates to: TPPCGRSWATPGKKL*APGRSPPGTPKRWQ
Trigger: CTGCCACCGTTTTGGTGTCCCTGGTGGAGAACGGCCAGGTGCCAAAAGCTTCTTCCCAGGGGTTGCCCAACTCCTCCCGCAGGGAGGCGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115659.6
CDS CAA 72 bp TTGACATCCATCAGCGACGCCTCCCTGCGGGAGGAGTaGGGCAACCCCTGGGAAGAAGCTTTTGGCACCTGG +
Preference number: 6 (lower is better)
Translates to: LTSISDASLREE*GNPWEEAFGTW
Trigger: CCAGGTGCCAAAAGCTTCTTCCCAGGGGTTGCCCAACTCCTCCCGCAGGGAGGCGTCGCTGATGGATGTCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115659.6
CDS TCA 72 bp TGCCGGGGCTTTCCGGGCACGTCTCCTCCAACAGAATaGCTTTCCATTCCCACTTCGGCCACTGGGCAAGGT +
Preference number: 6 (lower is better)
Translates to: CRGFPGTSPPTE*LSIPTSATGQG
Trigger: ACCTTGCCCAGTGGCCGAAGTGGGAATGGAAAGTCATTCTGTTGGAGGAGACGTGCCCGGAAAGCCCCGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115659.6
CDS CAA 72 bp TGCGGGAGGAGTTGGGCAACCCCTGGGAAGAAGCTTTaGGCACCTGGCCGTTCTCCACCAGGGACACCAAAA +
Preference number: 6 (lower is better)
Translates to: CGRSWATPGKKL*APGRSPPGTPK
Trigger: TTTTGGTGTCCCTGGTGGAGAACGGCCAGGTGCCAAAAGCTTCTTCCCAGGGGTTGCCCAACTCCTCCCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115659.6
CDS CAA 90 bp AGGTATACATTGACATCCATCAGCGACGCCTCCCTGCGGGAGGAGTaGGGCAACCCCTGGGAAGAAGCTTTTGGCACCTGGCCGTTCTCC +
Preference number: 6 (lower is better)
Translates to: RYTLTSISDASLREE*GNPWEEAFGTWPFS
Trigger: GGAGAACGGCCAGGTGCCAAAAGCTTCTTCCCAGGGGTTGCCCAACTCCTCCCGCAGGGAGGCGTCGCTGATGGATGTCAATGTATACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115659.6
CDS TCA 72 bp GCGGTAAATCAGATTCATCCAGGGCTCGGGTCATGCTaGTCTCACCCGTGTAGAGACCGACACGGAAAGGGC +
Preference number: 6 (lower is better)
Translates to: AVNQIHPGLGSC*SHPCRDRHGKG
Trigger: GCCCTTTCCGTGTCGGTCTCTACACGGGTGAGATCAGCATGACCCGAGCCCTGGATGAATCTGATTTACCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115659.6
CDS GCA 72 bp AGGAGCAGAAGCCAAAGTAGCAGGCGCCAAGCTCCATaGCTCAGACATTTGGAGATCACCACTGAAGCATTC +
Preference number: 6 (lower is better)
Translates to: RSRSQSSRRQAP*LRHLEITTEAF
Trigger: GAATGCTTCAGTGGTGATCTCCAAATGTCTGAGGCATGGAGCTTGGCGCCTGCTACTTTGGCTTCTGCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115659.6
CDS CCA 72 bp GATTTCCACGAGTACGGTGCAGTGAGCAACCATAGGTaGGTATCCTTTATCTGTAGCATCCACGTGAATTTC +
Preference number: 6 (lower is better)
Translates to: DFHEYGAVSNHR*VSFICSIHVNF
Trigger: GAAATTCACGTGGATGCTACAGATAAAGGATACCCACCTATGGTTGCTCACTGCACCGTACTCGTGGAAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115659.6
CDS CAA 72 bp CAAAGTAGCAGGCGCCAAGCTCCATGCCTCAGACATTaGGAGATCACCACTGAAGCATTCTCTTGTCTTAAA +
Preference number: 6 (lower is better)
Translates to: QSSRRQAPCLRH*EITTEAFSCLK
Trigger: TTTAAGACAAGAGAATGCTTCAGTGGTGATCTCCAAATGTCTGAGGCATGGAGCTTGGCGCCTGCTACTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115659.6
CDS CAA 72 bp TGGATCAACAGAGAAACCGATCCCGTAAATTCAGGTTaGCCTCCATCGGTTGCTGTCAGTAGCAACTTTAGC +
Preference number: 6 (lower is better)
Translates to: WINRETDPVNSG*PPSVAVSSNFS
Trigger: GCTAAAGTTGCTACTGACAGCAACCGATGGAGGCAAACCTGAATTTACGGGATCGGTTTCTCTGTTGATCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115659.6
CDS CAA 72 bp AGAATCAAGCAGTCTAGATTCAGCTACCAAGATCTTTaGTTCCGCTACGGAGAATATCGGAGGGTTGTCATT +
Preference number: 6 (lower is better)
Translates to: RIKQSRFSYQDL*FRYGEYRRVVI
Trigger: AATGACAACCCTCCGATATTCTCCGTAGCGGAACAAAAGATCTTGGTAGCTGAATCTAGACTGCTTGATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115659.6