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Pregenerated sensors for PCDHA8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000103800

Ensembl transcript IDs: ENSMUST00000194038.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp TGTGCATGCCTGCTCTTAGCGAGGCAGAGTAGCGCCAGTCAGGGTTaGGCTGCCGGGGCTTCTCGGAGGAGTCCAAAGAAACAGATGGTT +
Preference number: 5 (lower is better)
Translates to: CACLLLARQSSASQG*AAGASRRSPKKQMV
Trigger: AACCATCTGTTTCTTTGGACTCCTCCGAGAAGCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAGGCATGCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194038.2
CDS CCA 90 bp GAATTTGTCTGGCAACTCACCGGGACCGGACTGTTTGGGGTTGCCTaGTCCGTATTTAAAGGTCCAGCTGTTGCTGTTGACACCGGCGCC +
Preference number: 5 (lower is better)
Translates to: EFVWQLTGTGLFGVA*SVFKGPAVAVDTGA
Trigger: GGCGCCGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAGTCCGGTCCCGGTGAGTTGCCAGACAAATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194038.2
CDS CCA 90 bp CCGGATGGAGATGATTGCAGGAGATCCTGGGATAATGAATTTGTCTaGCAACTCACCGGGACCGGACTGTTTGGGGTTGCCTGGTCCGTA +
Preference number: 5 (lower is better)
Translates to: PDGDDCRRSWDNEFV*QLTGTGLFGVAWSV
Trigger: TACGGACCAGGCAACCCCAAACAGTCCGGTCCCGGTGAGTTGCCAGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194038.2
CDS CCA 90 bp GTTGTTAGCAGGCTCCTGCCGGATGGAGATGATTGCAGGAGATCCTaGGATAATGAATTTGTCTGGCAACTCACCGGGACCGGACTGTTT +
Preference number: 5 (lower is better)
Translates to: VVSRLLPDGDDCRRS*DNEFVWQLTGTGLF
Trigger: AAACAGTCCGGTCCCGGTGAGTTGCCAGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTGCTAACAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194038.2
CDS CCA 72 bp CCAGCATGGGCTTCCCAGACCCACAAGCGCCCCCAGTaGGTGTCGCCGAGCAGCGCAGCGCTGTGTACAGCA +
Preference number: 6 (lower is better)
Translates to: PAWASQTHKRPQ*VSPSSAALCTA
Trigger: TGCTGTACACAGCGCTGCGCTGCTCGGCGACACCCACTGGGGGCGCTTGTGGGTCTGGGAAGCCCATGCTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000194038.2
CDS CCA 72 bp CTGCTCTTAGCGAGGCAGAGTAGCGCCAGTCAGGGTTaGGCTGCCGGGGCTTCTCGGAGGAGTCCAAAGAAA +
Preference number: 6 (lower is better)
Translates to: LLLARQSSASQG*AAGASRRSPKK
Trigger: TTTCTTTGGACTCCTCCGAGAAGCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194038.2
CDS CCA 72 bp GCAAAACGAGCCCAAGGGGTTTCACCTGCTCGTGGTTaGGCGGTACATCCAGAGAGAAATGTTCATTGGTGC +
Preference number: 6 (lower is better)
Translates to: AKRAQGVSPARG*AVHPERNVHWC
Trigger: GCACCAATGAACATTTCTCTCTGGATGTACCGCCCAACCACGAGCAGGTGAAACCCCTTGGGCTCGTTTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194038.2
CDS CAA 72 bp CGCAAAACGAGCCCAAGGGGTTTCACCTGCTCGTGGTaGGGCGGTACATCCAGAGAGAAATGTTCATTGGTG +
Preference number: 6 (lower is better)
Translates to: RKTSPRGFTCSW*GGTSREKCSLV
Trigger: CACCAATGAACATTTCTCTCTGGATGTACCGCCCAACCACGAGCAGGTGAAACCCCTTGGGCTCGTTTTGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194038.2
CDS CCA 72 bp TTCCGCAAAACGAGCCCAAGGGGTTTCACCTGCTCGTaGTTGGGCGGTACATCCAGAGAGAAATGTTCATTG +
Preference number: 6 (lower is better)
Translates to: FRKTSPRGFTCS*LGGTSREKCSL
Trigger: CAATGAACATTTCTCTCTGGATGTACCGCCCAACCACGAGCAGGTGAAACCCCTTGGGCTCGTTTTGCGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194038.2
CDS CAA 72 bp GCATCTTCTTTAACAGGGAGCCAGAGTGTTTTGACATaGAGCTGTGGAGCATTATCGTTAGCATCTACAACT +
Preference number: 6 (lower is better)
Translates to: ASSLTGSQSVLT*SCGALSLASTT
Trigger: AGTTGTAGATGCTAACGATAATGCTCCACAGCTCAATGTCAAAACACTCTGGCTCCCTGTTAAAGAAGATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194038.2