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Pregenerated sensors for PCDHA7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000104318

Ensembl transcript IDs: ENSMUST00000192631.2

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp TACAGGCCTACACGGAAGGGACTACGAACTCCACCCGCAACTGGCTaGAGCTCAAAAGACAACCACGCATTGTATCCAGAGTCCTCATCT +
Preference number: 5 (lower is better)
Translates to: YRPTRKGLRTPPATG*SSKDNHALYPESSS
Trigger: AGATGAGGACTCTGGATACAATGCGTGGTTGTCTTTTGAGCTGCAGCCAGTTGCGGGTGGAGTTCGTAGTCCCTTCCGTGTAGGCCTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2
CDS CCA 90 bp AGACCTTCTGTGTTTGGCCGCTGTCTACCAGAGAAAGCAACACCGTaGCTGTGGCGGTCAGAGAAGGTTCTCCGTGATCTTTCACCAACA +
Preference number: 5 (lower is better)
Translates to: RPSVFGRCLPEKATP*LWRSEKVLRDLSPT
Trigger: TGTTGGTGAAAGATCACGGAGAACCTTCTCTGACCGCCACAGCCACGGTGTTGCTTTCTCTGGTAGACAGCGGCCAAACACAGAAGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2
CDS CCA 90 bp TCTGTGTTTGGCCGCTGTCTACCAGAGAAAGCAACACCGTGGCTGTaGCGGTCAGAGAAGGTTCTCCGTGATCTTTCACCAACACTAACA +
Preference number: 5 (lower is better)
Translates to: SVFGRCLPEKATPWL*RSEKVLRDLSPTLT
Trigger: TGTTAGTGTTGGTGAAAGATCACGGAGAACCTTCTCTGACCGCCACAGCCACGGTGTTGCTTTCTCTGGTAGACAGCGGCCAAACACAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2
CDS TCA 90 bp TTGTATCCAGAGTCCTCATCTACGGCCCGGACTTTCGCCACAACCTaGCCAGGCACCAAAGCTCTTGATACTACCTCATTCATTGTGCCA +
Preference number: 5 (lower is better)
Translates to: LYPESSSTARTFATT*PGTKALDTTSFIVP
Trigger: TGGCACAATGAATGAGGTAGTATCAAGAGCTTTGGTGCCTGGTCAGGTTGTGGCGAAAGTCCGGGCCGTAGATGAGGACTCTGGATACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2
CDS CCA 72 bp CCAGCATGGGCTTCCCTGGAGCACAGGCTCCATCGGTaGGCGTCGCCGAACAGCGCAGCGCTGTGTACAGCA +
Preference number: 6 (lower is better)
Translates to: PAWASLEHRLHR*ASPNSAALCTA
Trigger: TGCTGTACACAGCGCTGCGCTGTTCGGCGACGCCCACCGATGGAGCCTGTGCTCCAGGGAAGCCCATGCTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2
CDS CCA 72 bp GGCCGCTGTCTACCAGAGAAAGCAACACCGTGGCTGTaGCGGTCAGAGAAGGTTCTCCGTGATCTTTCACCA +
Preference number: 6 (lower is better)
Translates to: GRCLPEKATPWL*RSEKVLRDLSP
Trigger: TGGTGAAAGATCACGGAGAACCTTCTCTGACCGCCACAGCCACGGTGTTGCTTTCTCTGGTAGACAGCGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2
CDS CCA 72 bp GCCTACACGGAAGGGACTACGAACTCCACCCGCAACTaGCTGCAGCTCAAAAGACAACCACGCATTGTATCC +
Preference number: 6 (lower is better)
Translates to: AYTEGTTNSTRN*LQLKRQPRIVS
Trigger: GGATACAATGCGTGGTTGTCTTTTGAGCTGCAGCCAGTTGCGGGTGGAGTTCGTAGTCCCTTCCGTGTAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2
CDS CCA 72 bp GTGTTTGGCCGCTGTCTACCAGAGAAAGCAACACCGTaGCTGTGGCGGTCAGAGAAGGTTCTCCGTGATCTT +
Preference number: 6 (lower is better)
Translates to: VFGRCLPEKATP*LWRSEKVLRDL
Trigger: AAGATCACGGAGAACCTTCTCTGACCGCCACAGCCACGGTGTTGCTTTCTCTGGTAGACAGCGGCCAAACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2
CDS CAA 72 bp TTGTCTGGCAACTCACCGGGACCGGACTGTTTGGGGTaGCCTGGTCCGTATTTAAAGGTCCAGCTGTTGCTG +
Preference number: 6 (lower is better)
Translates to: LSGNSPGPDCLG*PGPYLKVQLLL
Trigger: CAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAGTCCGGTCCCGGTGAGTTGCCAGACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2
CDS TCA 72 bp GAGTCCTCATCTACGGCCCGGACTTTCGCCACAACCTaGCCAGGCACCAAAGCTCTTGATACTACCTCATTC +
Preference number: 6 (lower is better)
Translates to: ESSSTARTFATT*PGTKALDTTSF
Trigger: GAATGAGGTAGTATCAAGAGCTTTGGTGCCTGGTCAGGTTGTGGCGAAAGTCCGGGCCGTAGATGAGGACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2
CDS GCA 72 bp ACACGGAAGGGACTACGAACTCCACCCGCAACTGGCTaGAGCTCAAAAGACAACCACGCATTGTATCCAGAG +
Preference number: 6 (lower is better)
Translates to: TRKGLRTPPATG*SSKDNHALYPE
Trigger: CTCTGGATACAATGCGTGGTTGTCTTTTGAGCTGCAGCCAGTTGCGGGTGGAGTTCGTAGTCCCTTCCGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2
CDS CAA 72 bp ATGAATTTGTCTGGCAACTCACCGGGACCGGACTGTTaGGGGTTGCCTGGTCCGTATTTAAAGGTCCAGCTG +
Preference number: 6 (lower is better)
Translates to: MNLSGNSPGPDC*GLPGPYLKVQL
Trigger: CAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAGTCCGGTCCCGGTGAGTTGCCAGACAAATTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2
CDS TCA 72 bp GACTTTCGCCACAACCTGACCAGGCACCAAAGCTCTTaGTACTACCTCATTCATTGTGCCACCAACCCCGTT +
Preference number: 6 (lower is better)
Translates to: DFRHNLTRHQSS*YYLIHCATNPV
Trigger: AACGGGGTTGGTGGCACAATGAATGAGGTAGTATCAAGAGCTTTGGTGCCTGGTCAGGTTGTGGCGAAAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2
CDS CAA 72 bp ATGGAGATGATTGCAGGAGATCCTGGGATAATGAATTaGTCTGGCAACTCACCGGGACCGGACTGTTTGGGG +
Preference number: 6 (lower is better)
Translates to: MEMIAGDPGIMN*SGNSPGPDCLG
Trigger: CCCCAAACAGTCCGGTCCCGGTGAGTTGCCAGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2
CDS CAA 72 bp GTCTCCTCCTTTTTGCCGAAGGTTATAAAATCGCTTTaGTCAATTTGGTTGTTAGCAGGCTCCTGCCGGATG +
Preference number: 6 (lower is better)
Translates to: VSSFLPKVIKSL*SIWLLAGSCRM
Trigger: CATCCGGCAGGAGCCTGCTAACAACCAAATTGACAAAAGCGATTTTATAACCTTCGGCAAAAAGGAGGAGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2
CDS TCA 72 bp TCAAATACGCTAATTAAAGTGACGACTCTTCCAGGTTaGCTGTCCTCGGATACTGGGAGAGACAAGGAACTA +
Preference number: 6 (lower is better)
Translates to: SNTLIKVTTLPG*LSSDTGRDKEL
Trigger: TAGTTCCTTGTCTCTCCCAGTATCCGAGGACAGTCAACCTGGAAGAGTCGTCACTTTAATTAGCGTATTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2
CDS CAA 72 bp TTGCCGAAGGTTATAAAATCGCTTTTGTCAATTTGGTaGTTAGCAGGCTCCTGCCGGATGGAGATGATTGCA +
Preference number: 6 (lower is better)
Translates to: LPKVIKSLLSIW*LAGSCRMEMIA
Trigger: TGCAATCATCTCCATCCGGCAGGAGCCTGCTAACAACCAAATTGACAAAAGCGATTTTATAACCTTCGGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192631.2