Pregenerated sensors for PCDHA7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000104318Ensembl transcript IDs: ENSMUST00000192631.2
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS GCA 90 bp | TACAGGCCTACACGGAAGGGACTACGAACTCCACCCGCAACTGGCTaGAGCTCAAAAGACAACCACGCATTGTATCCAGAGTCCTCATCT | + |
Preference number: 5 (lower is better) Translates to: YRPTRKGLRTPPATG*SSKDNHALYPESSS Trigger: AGATGAGGACTCTGGATACAATGCGTGGTTGTCTTTTGAGCTGCAGCCAGTTGCGGGTGGAGTTCGTAGTCCCTTCCGTGTAGGCCTGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |
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CDS CCA 90 bp | AGACCTTCTGTGTTTGGCCGCTGTCTACCAGAGAAAGCAACACCGTaGCTGTGGCGGTCAGAGAAGGTTCTCCGTGATCTTTCACCAACA | + |
Preference number: 5 (lower is better) Translates to: RPSVFGRCLPEKATP*LWRSEKVLRDLSPT Trigger: TGTTGGTGAAAGATCACGGAGAACCTTCTCTGACCGCCACAGCCACGGTGTTGCTTTCTCTGGTAGACAGCGGCCAAACACAGAAGGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |
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CDS CCA 90 bp | TCTGTGTTTGGCCGCTGTCTACCAGAGAAAGCAACACCGTGGCTGTaGCGGTCAGAGAAGGTTCTCCGTGATCTTTCACCAACACTAACA | + |
Preference number: 5 (lower is better) Translates to: SVFGRCLPEKATPWL*RSEKVLRDLSPTLT Trigger: TGTTAGTGTTGGTGAAAGATCACGGAGAACCTTCTCTGACCGCCACAGCCACGGTGTTGCTTTCTCTGGTAGACAGCGGCCAAACACAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |
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CDS TCA 90 bp | TTGTATCCAGAGTCCTCATCTACGGCCCGGACTTTCGCCACAACCTaGCCAGGCACCAAAGCTCTTGATACTACCTCATTCATTGTGCCA | + |
Preference number: 5 (lower is better) Translates to: LYPESSSTARTFATT*PGTKALDTTSFIVP Trigger: TGGCACAATGAATGAGGTAGTATCAAGAGCTTTGGTGCCTGGTCAGGTTGTGGCGAAAGTCCGGGCCGTAGATGAGGACTCTGGATACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |
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CDS CCA 72 bp | CCAGCATGGGCTTCCCTGGAGCACAGGCTCCATCGGTaGGCGTCGCCGAACAGCGCAGCGCTGTGTACAGCA | + |
Preference number: 6 (lower is better) Translates to: PAWASLEHRLHR*ASPNSAALCTA Trigger: TGCTGTACACAGCGCTGCGCTGTTCGGCGACGCCCACCGATGGAGCCTGTGCTCCAGGGAAGCCCATGCTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |
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CDS CCA 72 bp | GGCCGCTGTCTACCAGAGAAAGCAACACCGTGGCTGTaGCGGTCAGAGAAGGTTCTCCGTGATCTTTCACCA | + |
Preference number: 6 (lower is better) Translates to: GRCLPEKATPWL*RSEKVLRDLSP Trigger: TGGTGAAAGATCACGGAGAACCTTCTCTGACCGCCACAGCCACGGTGTTGCTTTCTCTGGTAGACAGCGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |
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CDS CCA 72 bp | GCCTACACGGAAGGGACTACGAACTCCACCCGCAACTaGCTGCAGCTCAAAAGACAACCACGCATTGTATCC | + |
Preference number: 6 (lower is better) Translates to: AYTEGTTNSTRN*LQLKRQPRIVS Trigger: GGATACAATGCGTGGTTGTCTTTTGAGCTGCAGCCAGTTGCGGGTGGAGTTCGTAGTCCCTTCCGTGTAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |
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CDS CCA 72 bp | GTGTTTGGCCGCTGTCTACCAGAGAAAGCAACACCGTaGCTGTGGCGGTCAGAGAAGGTTCTCCGTGATCTT | + |
Preference number: 6 (lower is better) Translates to: VFGRCLPEKATP*LWRSEKVLRDL Trigger: AAGATCACGGAGAACCTTCTCTGACCGCCACAGCCACGGTGTTGCTTTCTCTGGTAGACAGCGGCCAAACAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |
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CDS CAA 72 bp | TTGTCTGGCAACTCACCGGGACCGGACTGTTTGGGGTaGCCTGGTCCGTATTTAAAGGTCCAGCTGTTGCTG | + |
Preference number: 6 (lower is better) Translates to: LSGNSPGPDCLG*PGPYLKVQLLL Trigger: CAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAGTCCGGTCCCGGTGAGTTGCCAGACAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |
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CDS TCA 72 bp | GAGTCCTCATCTACGGCCCGGACTTTCGCCACAACCTaGCCAGGCACCAAAGCTCTTGATACTACCTCATTC | + |
Preference number: 6 (lower is better) Translates to: ESSSTARTFATT*PGTKALDTTSF Trigger: GAATGAGGTAGTATCAAGAGCTTTGGTGCCTGGTCAGGTTGTGGCGAAAGTCCGGGCCGTAGATGAGGACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |
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CDS GCA 72 bp | ACACGGAAGGGACTACGAACTCCACCCGCAACTGGCTaGAGCTCAAAAGACAACCACGCATTGTATCCAGAG | + |
Preference number: 6 (lower is better) Translates to: TRKGLRTPPATG*SSKDNHALYPE Trigger: CTCTGGATACAATGCGTGGTTGTCTTTTGAGCTGCAGCCAGTTGCGGGTGGAGTTCGTAGTCCCTTCCGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |
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CDS CAA 72 bp | ATGAATTTGTCTGGCAACTCACCGGGACCGGACTGTTaGGGGTTGCCTGGTCCGTATTTAAAGGTCCAGCTG | + |
Preference number: 6 (lower is better) Translates to: MNLSGNSPGPDC*GLPGPYLKVQL Trigger: CAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAGTCCGGTCCCGGTGAGTTGCCAGACAAATTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |
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CDS TCA 72 bp | GACTTTCGCCACAACCTGACCAGGCACCAAAGCTCTTaGTACTACCTCATTCATTGTGCCACCAACCCCGTT | + |
Preference number: 6 (lower is better) Translates to: DFRHNLTRHQSS*YYLIHCATNPV Trigger: AACGGGGTTGGTGGCACAATGAATGAGGTAGTATCAAGAGCTTTGGTGCCTGGTCAGGTTGTGGCGAAAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |
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CDS CAA 72 bp | ATGGAGATGATTGCAGGAGATCCTGGGATAATGAATTaGTCTGGCAACTCACCGGGACCGGACTGTTTGGGG | + |
Preference number: 6 (lower is better) Translates to: MEMIAGDPGIMN*SGNSPGPDCLG Trigger: CCCCAAACAGTCCGGTCCCGGTGAGTTGCCAGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |
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CDS CAA 72 bp | GTCTCCTCCTTTTTGCCGAAGGTTATAAAATCGCTTTaGTCAATTTGGTTGTTAGCAGGCTCCTGCCGGATG | + |
Preference number: 6 (lower is better) Translates to: VSSFLPKVIKSL*SIWLLAGSCRM Trigger: CATCCGGCAGGAGCCTGCTAACAACCAAATTGACAAAAGCGATTTTATAACCTTCGGCAAAAAGGAGGAGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |
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CDS TCA 72 bp | TCAAATACGCTAATTAAAGTGACGACTCTTCCAGGTTaGCTGTCCTCGGATACTGGGAGAGACAAGGAACTA | + |
Preference number: 6 (lower is better) Translates to: SNTLIKVTTLPG*LSSDTGRDKEL Trigger: TAGTTCCTTGTCTCTCCCAGTATCCGAGGACAGTCAACCTGGAAGAGTCGTCACTTTAATTAGCGTATTTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |
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CDS CAA 72 bp | TTGCCGAAGGTTATAAAATCGCTTTTGTCAATTTGGTaGTTAGCAGGCTCCTGCCGGATGGAGATGATTGCA | + |
Preference number: 6 (lower is better) Translates to: LPKVIKSLLSIW*LAGSCRMEMIA Trigger: TGCAATCATCTCCATCCGGCAGGAGCCTGCTAACAACCAAATTGACAAAAGCGATTTTATAACCTTCGGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192631.2 |