Pregenerated sensors for PCDHA5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000103092

Ensembl transcript IDs: ENSMUST00000192168.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 72 bp	GCACAGGGCAGAGAGTCCAACTCTCACTGGCGGGGCTaGGAAGCTTCTCCTTTGCGGCGGGGGAGAAAGGAA	+
Preference number: 3 (lower is better) Translates to: AQGRESNSHWRG*EASPLRRGRKE Trigger: TTCCTTTCTCCCCCGCCGCAAAGGAGAAGCTTCCCAGCCCCGCCAGTGAGAGTTGGACTCTCTGCCCTGTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000192168.2
3UTR CCA 72 bp	TGGGTCTGCTTTTTAGGTTCTGAAAACAAGCCAGAGTaGAGAGAGAGAGAGTTAACACCAGACTTAGGAAAG	+
Preference number: 3 (lower is better) Translates to: WVCFLGSENKPE*RERELTPDLGK Trigger: CTTTCCTAAGTCTGGTGTTAACTCTCTCTCTCTCCACTCTGGCTTGTTTTCAGAACCTAAAAAGCAGACCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000192168.2
3UTR CCA 72 bp	ATTTCAAAGCAGTCTGCAAATTCAAAGAGGTCAGATTaGTACAATTTTGTGCTTGCATACCCTCAGGGACTT	+
Preference number: 3 (lower is better) Translates to: ISKQSANSKRSD*YNFVLAYPQGL Trigger: AAGTCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTTGAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192168.2
CDS CCA 72 bp	CCAGCACTGGCTTTCCTGGAGCACAGGCTCCATCAGTaGGCGTCGCTGAGCAGCGAATCGCTGTGTACAGAA	+
Preference number: 6 (lower is better) Translates to: PALAFLEHRLHQ*ASLSSESLCTE Trigger: TTCTGTACACAGCGATTCGCTGCTCAGCGACGCCCACTGATGGAGCCTGTGCTCCAGGAAAGCCAGTGCTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192168.2
CDS CAA 72 bp	ACGTTATCATTTACATCCACTAGTTTCACTATAATTTaGCAGTGTCCTGCTAGTGGGAATGCGCTTCTGTCC	+
Preference number: 6 (lower is better) Translates to: TLSFTSTSFTII*QCPASGNALLS Trigger: GGACAGAAGCGCATTCCCACTAGCAGGACACTGCAAAATTATAGTGAAACTAGTGGATGTAAATGATAACGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192168.2
CDS CAA 72 bp	ATTTCTTTATTAATTCCCTCATCCGCATCTGAAGCATaGAGTTTAATGACTAATGTCCCGTTGGGTGTATTT	+
Preference number: 6 (lower is better) Translates to: ISLLIPSSASEA*SLMTNVPLGVF Trigger: AAATACACCCAACGGGACATTAGTCATTAAACTCAATGCTTCAGATGCGGATGAGGGAATTAATAAAGAAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192168.2

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