Pregenerated sensors for PCDHA4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000104252Ensembl transcript IDs: ENSMUST00000192295.2, ENSMUST00000192512.6
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ACGTGTACAGGAAACACATCAGATCTGCTTCTGTTGCCCTGGCCGACCCTCTTGTCTCACTGGCGGGGCTaGGAAGCTTCTCCTTTGCGG | + |
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Preference number: 2 (lower is better) Translates to: TCTGNTSDLLLLPWPTLLSHWRG*EASPLR Trigger: CCGCAAAGGAGAAGCTTCCCAGCCCCGCCAGTGAGA...CAAGAGGGTCGGCCAGGGCAACAGAAGCAGATCTGATGTGTTTCCTGTACACGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| 3UTR-3UTR CCA 90 bp | ACGTGTACAGGAAACACATCAGATCTGCTTCTGTTGCCCTGGCCGACCCTCTTGGGGAGAAAGGAAACCTaGGTCTGCTTTTTAGGTTCT | + |
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Preference number: 2 (lower is better) Translates to: TCTGNTSDLLLLPWPTLLGRKET*VCFLGS Trigger: AGAACCTAAAAAGCAGACCCAGGTTTCCTTTCTCCC...CAAGAGGGTCGGCCAGGGCAACAGAAGCAGATCTGATGTGTTTCCTGTACACGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| 3UTR-3UTR CCA 90 bp | ACGTGTACAGGAAACACATCAGATCTGCTTCTGTTGCCCTGGCCGACCCTCTTGCAAAAACTGGCTAAGTaGCTTGTTTCCATTTGGTGG | + |
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Preference number: 2 (lower is better) Translates to: TCTGNTSDLLLLPWPTLLQKLAK*LVSIWW Trigger: CCACCAAATGGAAACAAGCCACTTAGCCAGTTTTTG...CAAGAGGGTCGGCCAGGGCAACAGAAGCAGATCTGATGTGTTTCCTGTACACGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| 3UTR-3UTR CCA 90 bp | CACCGAGACAACCACAGAACCAGAGGAATGAAAAGTCTGCTCACTGTATGCATGCGGGGAGTTGCTACATaGGAGAGATTTGCCATTATT | + |
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Preference number: 2 (lower is better) Translates to: HRDNHRTRGMKSLLTVCMRGVAT*ERFAII Trigger: AATAATGGCAAATCTCTCCCATGTAGCAACTCCCCG...CATGCATACAGTGAGCAGACTTTTCATTCCTCTGGTTCTGTGGTTGTCTCGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| 3UTR-3UTR CCA 90 bp | GCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCCTCAGGGACTTTGCCGGTGGGGATaGTTTTGTCTGTTAGAGGAT | + |
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Preference number: 2 (lower is better) Translates to: ANSKRSDWYNFVLAYPQGLCRWG*FCLLED Trigger: ATCCTCTAACAGACAAAACCATCCCCACCGGCAAAG...TCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| 3UTR-3UTR CCA 90 bp | CAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCCTCAGGGACTGGGTCTTGATATCGTaGGTTAGAGAAGGTTGTGTA | + |
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Preference number: 2 (lower is better) Translates to: QIQRGQIGTILCLHTLRDWVLIS*VREGCV Trigger: TACACAACCTTCTCTAACCCACGATATCAAGACCCA...GTCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| 3UTR-3UTR CCA 90 bp | CAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCCTCAGGGACGAAAACAAGCCAGAGTaGAGAGAGAGAGAGTTAACA | + |
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Preference number: 2 (lower is better) Translates to: QIQRGQIGTILCLHTLRDENKPE*RERELT Trigger: TGTTAACTCTCTCTCTCTCCACTCTGGCTTGTTTTC...GTCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| 3UTR-3UTR CCA 90 bp | TACAATGTAGCAATGGTTCACATGCGCTGTCAACGAGTTTTACCCCATGCAATCTCAAAGAGGTCAGATTaGTACAATTTTGTGCTTGCA | + |
|
Preference number: 2 (lower is better) Translates to: YNVAMVHMRCQRVLPHAISKRSD*YNFVLA Trigger: TGCAAGCACAAAATTGTACCAATCTGACCTCTTTGA...GATTGCATGGGGTAAAACTCGTTGACAGCGCATGTGAACCATTGCTACATTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| 3UTR-3UTR CCA 90 bp | CAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCCTCAGGGACCATACAGCATACATATaGGAGATTGATTCAGGTAAC | + |
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Preference number: 2 (lower is better) Translates to: QIQRGQIGTILCLHTLRDHTAYI*EIDSGN Trigger: GTTACCTGAATCAATCTCCCATATGTATGCTGTATG...GTCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| 3UTR-3UTR CCA 90 bp | GCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCCTCAGGGATTGCATATGTGTTGTTaGAAAAGGATGAGACCTTTT | + |
|
Preference number: 2 (lower is better) Translates to: ANSKRSDWYNFVLAYPQGLHMCC*KRMRPF Trigger: AAAAGGTCTCATCCTTTTCCAACAACACATATGCAA...TCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| 3UTR-3UTR CCA 90 bp | GCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCCTCAGGGACATTATTACAAAAACTaGCTAAGTGGCTTGTTTCCA | + |
|
Preference number: 2 (lower is better) Translates to: ANSKRSDWYNFVLAYPQGHYYKN*LSGLFP Trigger: TGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATG...TCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| 3UTR TCA 72 bp | CAGCCTGCCCTGCAAATATCATCAAGACAGGATGCTTaGAGCACAGGGCAGAGAGTCCAACTCTCACTGGCG | + |
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Preference number: 3 (lower is better) Translates to: QPALQISSRQDA*STGQRVQLSLA Trigger: CGCCAGTGAGAGTTGGACTCTCTGCCCTGTGCTTCAAGCATCCTGTCTTGATGATATTTGCAGGGCAGGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| 3UTR TCA 72 bp | GGGGAGAAAGGAAACCTGGGTCTGCTTTTTAGGTTCTaGAAACAAGCCAGAGTGGAGAGAGAGAGAGTTAAC | + |
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Preference number: 3 (lower is better) Translates to: GEKGNLGLLFRF*KQARVERERVN Trigger: GTTAACTCTCTCTCTCTCCACTCTGGCTTGTTTTCAGAACCTAAAAAGCAGACCCAGGTTTCCTTTCTCCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| CDS-3UTR GCA 90 bp | TCTGGTCCTTGTAAGTTTCACATTTTCCCCCTCCAGATGAAAGACTCCCGGTGTCAGTCAGGGTTGGGCTaGCGGGGCTGGAACCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SGPCKFHIFPLQMKDSRCQSGLG*RGWNRS Trigger: GCTGCGGTTCCAGCCCCGGCAGCCCAACCCTGACTG...ACACCGGGAGTCTTTCATCTGGAGGGGGAAAATGTGAAACTTACAAGGACCAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000192295.2 |
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| CDS-3UTR CCA 90 bp | CACCGAGACAACCACAGAACCAGAGGAATGAAAAGTCTGCTCACTGTATGCATGTTGGGCTGCCGGGGCTaGAACCGCAGCAGCTCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: HRDNHRTRGMKSLLTVCMLGCRG*NRSSSS Trigger: GCTGGAGCTGCTGCGGTTCCAGCCCCGGCAGCCCAA...CATGCATACAGTGAGCAGACTTTTCATTCCTCTGGTTCTGTGGTTGTCTCGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192295.2 |
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| CDS-3UTR CCA 90 bp | CACCGAGACAACCACAGAACCAGAGGAATGAAAAGTCTGCTCACTGTATGCATGAGCGCCAGTCAGGGTTaGGCTGCCGGGGCTTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: HRDNHRTRGMKSLLTVCMSASQG*AAGAFQ Trigger: CTGGAAAGCCCCGGCAGCCCAACCCTGACTGGCGCT...CATGCATACAGTGAGCAGACTTTTCATTCCTCTGGTTCTGTGGTTGTCTCGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| CDS-3UTR TCA 90 bp | ACGTGTACAGGAAACACATCAGATCTGCTTCTGTTGCCCTGGCCGACCCTCTTGATGTGGACACCAACTTaGAGGGGACATGACTTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: TCTGNTSDLLLLPWPTLLMWTPT*RGHDLS Trigger: TGACAAGTCATGTCCCCTTCAAGTTGGTGTCCACAT...CAAGAGGGTCGGCCAGGGCAACAGAAGCAGATCTGATGTGTTTCCTGTACACGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CCA 90 bp | CACCGAGACAACCACAGAACCAGAGGAATGAAAAGTCTGCTCACTGTATGCATGTGGCCTCCTCAGGGATaGAGTAGTGGATCTGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: HRDNHRTRGMKSLLTVCMWPPQG*SSGSGC Trigger: ACAGCCAGATCCACTACTCCATCCCTGAGGAGGCCA...CATGCATACAGTGAGCAGACTTTTCATTCCTCTGGTTCTGTGGTTGTCTCGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR GCA 90 bp | TCTGGTCCTTGTAAGTTTCACATTTTCCCCCTCCAGATGAAAGACTCCCGGTGTGATCTGGCTGTTCCCTaGCTCCCAGATTGCAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: SGPCKFHIFPLQMKDSRCDLAVP*LPDCKK Trigger: CTTCTTGCAATCTGGGAGGCAGGGAACAGCCAGATC...ACACCGGGAGTCTTTCATCTGGAGGGGGAAAATGTGAAACTTACAAGGACCAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR GCA 90 bp | CACCGAGACAACCACAGAACCAGAGGAATGAAAAGTCTGCTCACTGTATGCATGGATCTGGCTGTTCCCTaGCTCCCAGATTGCAAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: HRDNHRTRGMKSLLTVCMDLAVP*LPDCKK Trigger: CTTCTTGCAATCTGGGAGGCAGGGAACAGCCAGATC...CATGCATACAGTGAGCAGACTTTTCATTCCTCTGGTTCTGTGGTTGTCTCGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CCA 90 bp | ACGTGTACAGGAAACACATCAGATCTGCTTCTGTTGCCCTGGCCGACCCTCTTGATTCTTTTGTGTTGTTaGGAACCTGGGAGGGTTGTC | + |
|
Preference number: 4 (lower is better) Translates to: TCTGNTSDLLLLPWPTLLILLCC*EPGRVV Trigger: GACAACCCTCCCAGGTTCCCAACAACACAAAAGAAT...CAAGAGGGTCGGCCAGGGCAACAGAAGCAGATCTGATGTGTTTCCTGTACACGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR TCA 90 bp | CACCGAGACAACCACAGAACCAGAGGAATGAAAAGTCTGCTCACTGTATGCATGACGGGAATTGCCTTCTaGCGATTGCAGCTCATAAGA | + |
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Preference number: 4 (lower is better) Translates to: HRDNHRTRGMKSLLTVCMTGIAF*RLQLIR Trigger: TCTTATGAGCTGCAATCGTCAGAAGGCAATTCCCGT...CATGCATACAGTGAGCAGACTTTTCATTCCTCTGGTTCTGTGGTTGTCTCGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| CDS-3UTR TCA 90 bp | GCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCCTCAGGGAGTTGACATCCACCAGTaGCGCCTCAGAGTGTGTGAC | + |
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Preference number: 4 (lower is better) Translates to: ANSKRSDWYNFVLAYPQGVDIHQ*RLRVCD Trigger: GTCACACACTCTGAGGCGTCACTGGTGGATGTCAAC...TCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| CDS-3UTR GCA 90 bp | CACCGAGACAACCACAGAACCAGAGGAATGAAAAGTCTGCTCACTGTATGCATGCCCTGCCTCCCAGATTaGAAGAAGCAGAAAAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: HRDNHRTRGMKSLLTVCMPCLPD*KKQKRK Trigger: CTTTCTTTTCTGCTTCTTGCAATCTGGGAGGCAGGG...CATGCATACAGTGAGCAGACTTTTCATTCCTCTGGTTCTGTGGTTGTCTCGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR GCA 90 bp | TCTGGTCCTTGTAAGTTTCACATTTTCCCCCTCCAGATGAAAGACTCCCGGTGTTCCAGAGGAATCCTCTaGAGACTGCAATTGATCCTC | + |
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Preference number: 4 (lower is better) Translates to: SGPCKFHIFPLQMKDSRCSRGIL*RLQLIL Trigger: GAGGATCAATTGCAGTCTGCAGAGGATTCCTCTGGA...ACACCGGGAGTCTTTCATCTGGAGGGGGAAAATGTGAAACTTACAAGGACCAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| CDS-3UTR CCA 90 bp | GATCACAACCTACAATGTAGCAATGGTTCACATGCGCTGTCAACGAGTTTTACCAAGCGCTGGGATTCCTaGCCACTTCCCCAGGAAAAT | + |
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Preference number: 4 (lower is better) Translates to: DHNLQCSNGSHALSTSFTKRWDS*PLPQEN Trigger: ATTTTCCTGGGGAAGTGGCCAGGAATCCCAGCGCTT...GGTAAAACTCGTTGACAGCGCATGTGAACCATTGCTACATTGTAGGTTGTGATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CCA 90 bp | CAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCCTCAGGGACGAAAGAAGCAAGCGCTaGGATTCCTGGCCACTTCCC | + |
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Preference number: 4 (lower is better) Translates to: QIQRGQIGTILCLHTLRDERSKR*DSWPLP Trigger: GGGAAGTGGCCAGGAATCCCAGCGCTTGCTTCTTTC...GTCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR TCA 90 bp | ACGTGTACAGGAAACACATCAGATCTGCTTCTGTTGCCCTGGCCGACCCTCTTGCTGGAACATTATCGTTaGTGTCTTCAACTTGTACAA | + |
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Preference number: 4 (lower is better) Translates to: TCTGNTSDLLLLPWPTLLLEHYR*CLQLVQ Trigger: TTGTACAAGTTGAAGACATCAACGATAATGTTCCAG...CAAGAGGGTCGGCCAGGGCAACAGAAGCAGATCTGATGTGTTTCCTGTACACGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CCA 90 bp | ACGTGTACAGGAAACACATCAGATCTGCTTCTGTTGCCCTGGCCGACCCTCTTGAGATCTGTCAAAAACTaGAGCATTATCATTGGCATC | + |
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Preference number: 4 (lower is better) Translates to: TCTGNTSDLLLLPWPTLLRSVKN*SIIIGI Trigger: GATGCCAATGATAATGCTCCAGTTTTTGACAGATCT...CAAGAGGGTCGGCCAGGGCAACAGAAGCAGATCTGATGTGTTTCCTGTACACGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CCA 90 bp | AAAGCAGTCTGCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACGCACACGCTCTCACTaGGGACAGTGGAACAGCGCA | + |
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Preference number: 4 (lower is better) Translates to: KAVCKFKEVRLVQFCACIRTRSH*GQWNSA Trigger: TGCGCTGTTCCACTGTCCCCAGTGAGAGCGTGTGCG...TATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| CDS-3UTR TCA 90 bp | GATCACAACCTACAATGTAGCAATGGTTCACATGCGCTGTCAACGAGTTTTACCATGTGGACACCAACTTaGAGGGGACATGACTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: DHNLQCSNGSHALSTSFTMWTPT*RGHDLS Trigger: TGACAAGTCATGTCCCCTTCAAGTTGGTGTCCACAT...GGTAAAACTCGTTGACAGCGCATGTGAACCATTGCTACATTGTAGGTTGTGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CCA 90 bp | AAAGCAGTCTGCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACTGCACCCACTGATCTaGACACCAACCGGCTCACGA | + |
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Preference number: 4 (lower is better) Translates to: KAVCKFKEVRLVQFCACILHPLI*TPTGSR Trigger: TCGTGAGCCGGTTGGTGTCCAGATCAGTGGGTGCAG...TATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| 3UTR CAA 72 bp | ACCAGCTTTATCCATTTTCCCTTGCCAGCAGGATTCTaGGCAAGAGACAGCCCTTGGCTGACCATAAATAAA | + |
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Preference number: 4 (lower is better) Translates to: TSFIHFPLPAGF*ARDSPWLTINK Trigger: TTTATTTATGGTCAGCCAAGGGCTGTCTCTTGCCAAGAATCCTGCTGGCAAGGGAAAATGGATAAAGCTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR TCA 90 bp | GCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCCTCAGGGATCTGCAGACTGCAATTaGTCCTCTCTGTCCCTTGAA | + |
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Preference number: 4 (lower is better) Translates to: ANSKRSDWYNFVLAYPQGSADCN*SSLSLE Trigger: TTCAAGGGACAGAGAGGATCAATTGCAGTCTGCAGA...TCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| CDS-3UTR GCA 90 bp | GCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCCTCAGGGACCCTGCCTCCCAGATTaGAAGAAGCAGAAAAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: ANSKRSDWYNFVLAYPQGPCLPD*KKQKRK Trigger: CTTTCTTTTCTGCTTCTTGCAATCTGGGAGGCAGGG...TCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR GCA 90 bp | AAAGCAGTCTGCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATATCCACCAGAGACTCCTaGCTCAGGTTCCAGCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: KAVCKFKEVRLVQFCACISTRDS*LRFQQC Trigger: ACACTGCTGGAACCTGAGGCAGGAGTCTCTGGTGGA...TATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| CDS-3UTR CCA 90 bp | AAAGCAGTCTGCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATAGAAAGAAGCAAGCGCTaGGATTCCTGGCCACTTCCC | + |
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Preference number: 4 (lower is better) Translates to: KAVCKFKEVRLVQFCACIERSKR*DSWPLP Trigger: GGGAAGTGGCCAGGAATCCCAGCGCTTGCTTCTTTC...TATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR TCA 90 bp | TACAATGTAGCAATGGTTCACATGCGCTGTCAACGAGTTTTACCCCATGCAATCAGTGTCAAGTGGCCTTaGTTCTGCAATGAACAGATT | + |
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Preference number: 4 (lower is better) Translates to: YNVAMVHMRCQRVLPHAISVKWP*FCNEQI Trigger: AATCTGTTCATTGCAGAATCAAGGCCACTTGACACT...GATTGCATGGGGTAAAACTCGTTGACAGCGCATGTGAACCATTGCTACATTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR TCA 90 bp | TCTGGTCCTTGTAAGTTTCACATTTTCCCCCTCCAGATGAAAGACTCCCGGTGTTGTCAATTCCCTCTATaGGAATTTCATAGGATTTGC | + |
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Preference number: 4 (lower is better) Translates to: SGPCKFHIFPLQMKDSRCCQFPL*EFHRIC Trigger: GCAAATCCTATGAAATTCTCATAGAGGGAATTGACA...ACACCGGGAGTCTTTCATCTGGAGGGGGAAAATGTGAAACTTACAAGGACCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR TCA 90 bp | GATCACAACCTACAATGTAGCAATGGTTCACATGCGCTGTCAACGAGTTTTACCCTTCAACTTGTACAATaGCTTTACAGTGCCCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: DHNLQCSNGSHALSTSFTLQLVQ*LYSAQR Trigger: TCTCTGGGCACTGTAAAGTCATTGTACAAGTTGAAG...GGTAAAACTCGTTGACAGCGCATGTGAACCATTGCTACATTGTAGGTTGTGATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR GCA 90 bp | GCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCCTCAGGGACTCATAAGAGAGCCATaGATTATAGCCAGAGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: ANSKRSDWYNFVLAYPQGLIREP*IIARVC Trigger: GCAGACTCTGGCTATAATGCATGGCTCTCTTATGAG...TCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| CDS-3UTR CCA 90 bp | AAAGCAGTCTGCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATAAAGCGCTGGGATTCCTaGCCACTTCCCCAGGAAAAT | + |
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Preference number: 4 (lower is better) Translates to: KAVCKFKEVRLVQFCACIKRWDS*PLPQEN Trigger: ATTTTCCTGGGGAAGTGGCCAGGAATCCCAGCGCTT...TATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR GCA 90 bp | GCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCCTCAGGGAACAATGACTTTACAGTaGCCAGAGAGTGGAAGTTGT | + |
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Preference number: 4 (lower is better) Translates to: ANSKRSDWYNFVLAYPQGTMTLQ*PESGSC Trigger: ACAACTTCCACTCTCTGGGCACTGTAAAGTCATTGT...TCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| 3UTR CAA 72 bp | CATTTCAAAGCAGTCTGCAAATTCAAAGAGGTCAGATaGGTACAATTTTGTGCTTGCATACCCTCAGGGACT | + |
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Preference number: 4 (lower is better) Translates to: HFKAVCKFKEVR*VQFCACIPSGT Trigger: AGTCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTTGAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CCA 90 bp | CAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCCTCAGGGACCCGTTCGTCGTTGGATaGTTTTTCCAAAGAAAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: QIQRGQIGTILCLHTLRDPFVVG*FFQRKV Trigger: TACTTTTCTTTGGAAAAACCATCCAACGACGAACGG...GTCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CCA 90 bp | GCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCCTCAGGGATTACCCGTTCGTCGTTaGATGGTTTTTCCAAAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: ANSKRSDWYNFVLAYPQGLPVRR*MVFPKK Trigger: TTTCTTTGGAAAAACCATCCAACGACGAACGGGTAA...TCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CCA 90 bp | GATCACAACCTACAATGTAGCAATGGTTCACATGCGCTGTCAACGAGTTTTACCAGATCTGTCAAAAACTaGAGCATTATCATTGGCATC | + |
|
Preference number: 4 (lower is better) Translates to: DHNLQCSNGSHALSTSFTRSVKN*SIIIGI Trigger: GATGCCAATGATAATGCTCCAGTTTTTGACAGATCT...GGTAAAACTCGTTGACAGCGCATGTGAACCATTGCTACATTGTAGGTTGTGATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CCA 90 bp | AAAGCAGTCTGCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATAATTCTTTTGTGTTGTTaGGAACCTGGGAGGGTTGTC | + |
|
Preference number: 4 (lower is better) Translates to: KAVCKFKEVRLVQFCACIILLCC*EPGRVV Trigger: GACAACCCTCCCAGGTTCCCAACAACACAAAAGAAT...TATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR TCA 90 bp | AAAGCAGTCTGCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATAAGTGTCAAGTGGCCTTaGTTCTGCAATGAACAGATT | + |
|
Preference number: 4 (lower is better) Translates to: KAVCKFKEVRLVQFCACISVKWP*FCNEQI Trigger: AATCTGTTCATTGCAGAATCAAGGCCACTTGACACT...TATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CCA 90 bp | AAAGCAGTCTGCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCGTTCGTCGTTGGATaGTTTTTCCAAAGAAAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: KAVCKFKEVRLVQFCACIPFVVG*FFQRKV Trigger: TACTTTTCTTTGGAAAAACCATCCAACGACGAACGG...TATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CCA 90 bp | AAAGCAGTCTGCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATATTACCCGTTCGTCGTTaGATGGTTTTTCCAAAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: KAVCKFKEVRLVQFCACILPVRR*MVFPKK Trigger: TTTCTTTGGAAAAACCATCCAACGACGAACGGGTAA...TATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS CCA 90 bp | TGTGCATGCCTGCTCTTAGCGAGGCAGAGTAGCGCCAGTCAGGGTTaGGCTGCCGGGGCTTTCCAGAGGAATCCTCTGCAGACTGCAATT | + |
|
Preference number: 5 (lower is better) Translates to: CACLLLARQSSASQG*AAGAFQRNPLQTAI Trigger: AATTGCAGTCTGCAGAGGATTCCTCTGGAAAGCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAGGCATGCACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| CDS-3UTR CAA 90 bp | ACGTGTACAGGAAACACATCAGATCTGCTTCTGTTGCCCTGGCCGACCCTCTTGCCCAGAGAGTGGAAGTaGTCCCTTGTCAATTCCCTC | + |
|
Preference number: 5 (lower is better) Translates to: TCTGNTSDLLLLPWPTLLPREWK*SLVNSL Trigger: GAGGGAATTGACAAGGGACAACTTCCACTCTCTGGG...CAAGAGGGTCGGCCAGGGCAACAGAAGCAGATCTGATGTGTTTCCTGTACACGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CAA 90 bp | ACGTGTACAGGAAACACATCAGATCTGCTTCTGTTGCCCTGGCCGACCCTCTTGGATTCTTTTGTGTTGTaGGGAACCTGGGAGGGTTGT | + |
|
Preference number: 5 (lower is better) Translates to: TCTGNTSDLLLLPWPTLLDSFVL*GTWEGC Trigger: ACAACCCTCCCAGGTTCCCAACAACACAAAAGAATC...CAAGAGGGTCGGCCAGGGCAACAGAAGCAGATCTGATGTGTTTCCTGTACACGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CAA 90 bp | CACCGAGACAACCACAGAACCAGAGGAATGAAAAGTCTGCTCACTGTATGCATGCCCAGAGAGTGGAAGTaGTCCCTTGTCAATTCCCTC | + |
|
Preference number: 5 (lower is better) Translates to: HRDNHRTRGMKSLLTVCMPREWK*SLVNSL Trigger: GAGGGAATTGACAAGGGACAACTTCCACTCTCTGGG...CATGCATACAGTGAGCAGACTTTTCATTCCTCTGGTTCTGTGGTTGTCTCGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CAA 90 bp | CACCGAGACAACCACAGAACCAGAGGAATGAAAAGTCTGCTCACTGTATGCATGAGTGGAAGTTGTCCCTaGTCAATTCCCTCTATGAGA | + |
|
Preference number: 5 (lower is better) Translates to: HRDNHRTRGMKSLLTVCMSGSCP*SIPSMR Trigger: TCTCATAGAGGGAATTGACAAGGGACAACTTCCACT...CATGCATACAGTGAGCAGACTTTTCATTCCTCTGGTTCTGTGGTTGTCTCGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CAA 90 bp | AAAGCAGTCTGCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATAACCTGCAGAGTCACATaGCTGCCCAGGGCAGGTACA | + |
|
Preference number: 5 (lower is better) Translates to: KAVCKFKEVRLVQFCACITCRVT*LPRAGT Trigger: TGTACCTGCCCTGGGCAGCAATGTGACTCTGCAGGT...TATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| CDS-3UTR CAA 90 bp | TCTGGTCCTTGTAAGTTTCACATTTTCCCCCTCCAGATGAAAGACTCCCGGTGTTCTAAATCTGAGGCATaGACTTTGACTACCAATGTC | + |
|
Preference number: 5 (lower is better) Translates to: SGPCKFHIFPLQMKDSRCSKSEA*TLTTNV Trigger: GACATTGGTAGTCAAAGTCAATGCCTCAGATTTAGA...ACACCGGGAGTCTTTCATCTGGAGGGGGAAAATGTGAAACTTACAAGGACCAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CAA 90 bp | TCTGGTCCTTGTAAGTTTCACATTTTCCCCCTCCAGATGAAAGACTCCCGGTGTGTTGATGTCTTCAACTaGTACAATGACTTTACAGTG | + |
|
Preference number: 5 (lower is better) Translates to: SGPCKFHIFPLQMKDSRCVDVFN*YNDFTV Trigger: CACTGTAAAGTCATTGTACAAGTTGAAGACATCAAC...ACACCGGGAGTCTTTCATCTGGAGGGGGAAAATGTGAAACTTACAAGGACCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS GCA 90 bp | GGAACATTATCGTTGATGTCTTCAACTTGTACAATGACTTTACAGTaGCCAGAGAGTGGAAGTTGTCCCTTGTCAATTCCCTCTATGAGA | + |
|
Preference number: 5 (lower is better) Translates to: GTLSLMSSTCTMTLQ*PESGSCPLSIPSMR Trigger: TCTCATAGAGGGAATTGACAAGGGACAACTTCCACTCTCTGGGCACTGTAAAGTCATTGTACAAGTTGAAGACATCAACGATAATGTTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CAA 90 bp | AAAGCAGTCTGCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATAGATCCTCTCTGTCCCTaGAATCAGATAAACTGGGGC | + |
|
Preference number: 5 (lower is better) Translates to: KAVCKFKEVRLVQFCACIDPLCP*NQINWG Trigger: GCCCCAGTTTATCTGATTCAAGGGACAGAGAGGATC...TATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| CDS-3UTR CAA 90 bp | CAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCCTCAGGGACTCTAAATCTGAGGCATaGACTTTGACTACCAATGTC | + |
|
Preference number: 5 (lower is better) Translates to: QIQRGQIGTILCLHTLRDSKSEA*TLTTNV Trigger: GACATTGGTAGTCAAAGTCAATGCCTCAGATTTAGA...GTCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CAA 90 bp | TACAATGTAGCAATGGTTCACATGCGCTGTCAACGAGTTTTACCCCATGCAATCGGGTCTATGTGGAATTaGTATTTCACATTTGGTGAA | + |
|
Preference number: 5 (lower is better) Translates to: YNVAMVHMRCQRVLPHAIGSMWN*YFTFGE Trigger: TTCACCAAATGTGAAATACAAATTCCACATAGACCC...GATTGCATGGGGTAAAACTCGTTGACAGCGCATGTGAACCATTGCTACATTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS TCA 90 bp | TACAGTGCCCAGAGAGTGGAAGTTGTCCCTTGTCAATTCCCTCTATaGGAATTTCATAGGATTTGCATTCTTCAAAATCAATGTATCCCT | + |
|
Preference number: 5 (lower is better) Translates to: YSAQRVEVVPCQFPL*EFHRICILQNQCIP Trigger: AGGGATACATTGATTTTGAAGAATGCAAATCCTATGAAATTCTCATAGAGGGAATTGACAAGGGACAACTTCCACTCTCTGGGCACTGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CAA 90 bp | AAAGCAGTCTGCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATAAGTGGAAGTTGTCCCTaGTCAATTCCCTCTATGAGA | + |
|
Preference number: 5 (lower is better) Translates to: KAVCKFKEVRLVQFCACISGSCP*SIPSMR Trigger: TCTCATAGAGGGAATTGACAAGGGACAACTTCCACT...TATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CAA 90 bp | GCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATACCCTCAGGGAGTTGATGTCTTCAACTaGTACAATGACTTTACAGTG | + |
|
Preference number: 5 (lower is better) Translates to: ANSKRSDWYNFVLAYPQGVDVFN*YNDFTV Trigger: CACTGTAAAGTCATTGTACAAGTTGAAGACATCAAC...TCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS-3UTR CAA 90 bp | AAAGCAGTCTGCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTGCATAGGGTCTATGTGGAATTaGTATTTCACATTTGGTGAA | + |
|
Preference number: 5 (lower is better) Translates to: KAVCKFKEVRLVQFCACIGSMWN*YFTFGE Trigger: TTCACCAAATGTGAAATACAAATTCCACATAGACCC...TATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS CCA 72 bp | CTGCTCTTAGCGAGGCAGAGTAGCGCCAGTCAGGGTTaGGCTGCCGGGGCTTTCCAGAGGAATCCTCTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: LLLARQSSASQG*AAGAFQRNPLQ Trigger: CTGCAGAGGATTCCTCTGGAAAGCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| CDS CCA 72 bp | CCATTACCGGTTTTGGAGGCCCGCACACGCTCTCACTaGGGACAGTGGAACAGCGCAGCGCTGTGTACAGCA | + |
|
Preference number: 6 (lower is better) Translates to: PLPVLEARTRSH*GQWNSAALCTA Trigger: TGCTGTACACAGCGCTGCGCTGTTCCACTGTCCCCAGTGAGAGCGTGTGCGGGCCTCCAAAACCGGTAATGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192512.6 |
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| CDS GCA 72 bp | GTTGACACCCGTGTCCCGATCAGACACACTAATGAGTaGGATGACAGTGCCCACTGGAGAATTCTCTCGTAT | + |
|
Preference number: 6 (lower is better) Translates to: VDTRVPIRHTNE*DDSAHWRILSY Trigger: ATACGAGAGAATTCTCCAGTGGGCACTGTCATCGCACTCATTAGTGTGTCTGATCGGGACACGGGTGTCAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS GCA 72 bp | TCGTTGATGTCTTCAACTTGTACAATGACTTTACAGTaGCCAGAGAGTGGAAGTTGTCCCTTGTCAATTCCC | + |
|
Preference number: 6 (lower is better) Translates to: SLMSSTCTMTLQ*PESGSCPLSIP Trigger: GGGAATTGACAAGGGACAACTTCCACTCTCTGGGCACTGTAAAGTCATTGTACAAGTTGAAGACATCAACGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS CAA 90 bp | GTCTTCAACTTGTACAATGACTTTACAGTGCCCAGAGAGTGGAAGTaGTCCCTTGTCAATTCCCTCTATGAGAATTTCATAGGATTTGCA | + |
|
Preference number: 6 (lower is better) Translates to: VFNLYNDFTVPREWK*SLVNSLYENFIGFA Trigger: TGCAAATCCTATGAAATTCTCATAGAGGGAATTGACAAGGGACAACTTCCACTCTCTGGGCACTGTAAAGTCATTGTACAAGTTGAAGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS CAA 90 bp | AGATTTGAATTCCAATTCTGGAACATTATCGTTGATGTCTTCAACTaGTACAATGACTTTACAGTGCCCAGAGAGTGGAAGTTGTCCCTT | + |
|
Preference number: 6 (lower is better) Translates to: RFEFQFWNIIVDVFN*YNDFTVPREWKLSL Trigger: AAGGGACAACTTCCACTCTCTGGGCACTGTAAAGTCATTGTACAAGTTGAAGACATCAACGATAATGTTCCAGAATTGGAATTCAAATCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS CAA 90 bp | ACAGTGCCCACTGGAGAATTCTCTCGTATTGGAAGTGATAGAGATTaGAATTCCAATTCTGGAACATTATCGTTGATGTCTTCAACTTGT | + |
|
Preference number: 6 (lower is better) Translates to: TVPTGEFSRIGSDRD*NSNSGTLSLMSSTC Trigger: ACAAGTTGAAGACATCAACGATAATGTTCCAGAATTGGAATTCAAATCTCTATCACTTCCAATACGAGAGAATTCTCCAGTGGGCACTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS TCA 72 bp | CAGAGAGTGGAAGTTGTCCCTTGTCAATTCCCTCTATaGGAATTTCATAGGATTTGCATTCTTCAAAATCAA | + |
|
Preference number: 6 (lower is better) Translates to: QRVEVVPCQFPL*EFHRICILQNQ Trigger: TTGATTTTGAAGAATGCAAATCCTATGAAATTCTCATAGAGGGAATTGACAAGGGACAACTTCCACTCTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS CAA 72 bp | ACTGGAGAATTCTCTCGTATTGGAAGTGATAGAGATTaGAATTCCAATTCTGGAACATTATCGTTGATGTCT | + |
|
Preference number: 6 (lower is better) Translates to: TGEFSRIGSDRD*NSNSGTLSLMS Trigger: AGACATCAACGATAATGTTCCAGAATTGGAATTCAAATCTCTATCACTTCCAATACGAGAGAATTCTCCAGT 36% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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| CDS CAA 72 bp | GATAGAGATTTGAATTCCAATTCTGGAACATTATCGTaGATGTCTTCAACTTGTACAATGACTTTACAGTGC | + |
|
Preference number: 6 (lower is better) Translates to: DRDLNSNSGTLS*MSSTCTMTLQC Trigger: GCACTGTAAAGTCATTGTACAAGTTGAAGACATCAACGATAATGTTCCAGAATTGGAATTCAAATCTCTATC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192295.2 ENSMUST00000192512.6 |
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