RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCDHA3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000102312

Ensembl transcript IDs: ENSMUST00000192503.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AATACCTTTCAGCCTGCCCTGCAAATATCATCAAGACAGGATGCTTaGAGCACAGGGCAGAGAGTCCAACTCTCACTGGCGGGGCTGGGA +
Preference number: 1 (lower is better)
Translates to: NTFQPALQISSRQDA*STGQRVQLSLAGLG
Trigger: TCCCAGCCCCGCCAGTGAGAGTTGGACTCTCTGCCCTGTGCTTCAAGCATCCTGTCTTGATGATATTTGCAGGGCAGGCTGAAAGGTATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192503.2
3UTR TCA 90 bp TTTGCGGCGGGGGAGAAAGGAAACCTGGGTCTGCTTTTTAGGTTCTaGAAACAAGCCAGAGTGGAGAGAGAGAGAGTTAACACCAGACTT +
Preference number: 1 (lower is better)
Translates to: FAAGEKGNLGLLFRF*KQARVERERVNTRL
Trigger: AAGTCTGGTGTTAACTCTCTCTCTCTCCACTCTGGCTTGTTTTCAGAACCTAAAAAGCAGACCCAGGTTTCCTTTCTCCCCCGCCGCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000192503.2
3UTR CAA 90 bp GAATACCTTTCAGCCTGCCCTGCAAATATCATCAAGACAGGATGCTaGAAGCACAGGGCAGAGAGTCCAACTCTCACTGGCGGGGCTGGG +
Preference number: 2 (lower is better)
Translates to: EYLSACPANIIKTGC*KHRAESPTLTGGAG
Trigger: CCCAGCCCCGCCAGTGAGAGTTGGACTCTCTGCCCTGTGCTTCAAGCATCCTGTCTTGATGATATTTGCAGGGCAGGCTGAAAGGTATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192503.2
3UTR CAA 90 bp ATCAGATCTGCTTCTGTTGCCCTGGCCGACCCTCTTGTTAAACGCTaGAACTGCTGGCTCGTGTGCATACTGCAGGTTTTGAATACAGTG +
Preference number: 2 (lower is better)
Translates to: IRSASVALADPLVKR*NCWLVCILQVLNTV
Trigger: CACTGTATTCAAAACCTGCAGTATGCACACGAGCCAGCAGTTCAAGCGTTTAACAAGAGGGTCGGCCAGGGCAACAGAAGCAGATCTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192503.2
3UTR CAA 90 bp AGCAGTCTGCAAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTaGCATACCCTCAGGGACTTTCTTCAGTATTTATTCCAGAATTCT +
Preference number: 2 (lower is better)
Translates to: SSLQIQRGQIGTILC*HTLRDFLQYLFQNS
Trigger: AGAATTCTGGAATAAATACTGAAGAAAGTCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192503.2
3UTR CAA 90 bp TTTCAAAGCAGTCTGCAAATTCAAAGAGGTCAGATTGGTACAATTTaGTGCTTGCATACCCTCAGGGACTTTCTTCAGTATTTATTCCAG +
Preference number: 2 (lower is better)
Translates to: FQSSLQIQRGQIGTI*CLHTLRDFLQYLFQ
Trigger: CTGGAATAAATACTGAAGAAAGTCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTTGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192503.2
CDS TCA 90 bp CAACATCCACTACTACAGTACCATTTGGAGCATTTTCGGGTAATCTaGCTTTGTAGAATGTCTTCTCAAATGCTGGGGCGTTGTCGTTCA +
Preference number: 5 (lower is better)
Translates to: QHPLLQYHLEHFRVI*LCRMSSQMLGRCRS
Trigger: TGAACGACAACGCCCCAGCATTTGAGAAGACATTCTACAAAGTCAGATTACCCGAAAATGCTCCAAATGGTACTGTAGTAGTGGATGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192503.2
CDS CCA 72 bp AGCCTCCCTACCGGCAGAATCCACCAAAGTCCGGGATaGGGTGTTTGGCGTGTGCCCACTCTCCACCAGAGA +
Preference number: 6 (lower is better)
Translates to: SLPTGRIHQSPG*GVWRVPTLHQR
Trigger: TCTCTGGTGGAGAGTGGGCACACGCCAAACACCCCATCCCGGACTTTGGTGGATTCTGCCGGTAGGGAGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192503.2
CDS GCA 72 bp TTGGTTGTTAGCAGGCTCCTGCCGGATGGAGATGATTaGAGGAGATCCTGGGATAATGAATTTGTCTGGCAA +
Preference number: 6 (lower is better)
Translates to: LVVSRLLPDGDD*RRSWDNEFVWQ
Trigger: TTGCCAGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTGCTAACAACCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192503.2
CDS GCA 72 bp AAATCGCTTTTGTCAATTTGGTTGTTAGCAGGCTCCTaGCGGATGGAGATGATTGCAGGAGATCCTGGGATA +
Preference number: 6 (lower is better)
Translates to: KSLLSIWLLAGS*RMEMIAGDPGI
Trigger: TATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTGCTAACAACCAAATTGACAAAAGCGATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192503.2
CDS CAA 72 bp CCACAATTTCAACTAGAACCGTGCAATGATCTGTCATaGGAGGGGTTCCCTTGTCTGCTGCTTCTATCTGGA +
Preference number: 6 (lower is better)
Translates to: PQFQLEPCNDLS*EGFPCLLLLSG
Trigger: TCCAGATAGAAGCAGCAGACAAGGGAACCCCTCCAATGACAGATCATTGCACGGTTCTAGTTGAAATTGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192503.2
CDS GCA 72 bp CGTGCAATGATCTGTCATTGGAGGGGTTCCCTTGTCTaGTGCTTCTATCTGGATTTCAAAAGATTTGGTTTC +
Preference number: 6 (lower is better)
Translates to: RAMICHWRGSLV*CFYLDFKRFGF
Trigger: GAAACCAAATCTTTTGAAATCCAGATAGAAGCAGCAGACAAGGGAACCCCTCCAATGACAGATCATTGCACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192503.2
CDS TCA 72 bp CTACTACAGTACCATTTGGAGCATTTTCGGGTAATCTaGCTTTGTAGAATGTCTTCTCAAATGCTGGGGCGT +
Preference number: 6 (lower is better)
Translates to: LLQYHLEHFRVI*LCRMSSQMLGR
Trigger: ACGCCCCAGCATTTGAGAAGACATTCTACAAAGTCAGATTACCCGAAAATGCTCCAAATGGTACTGTAGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192503.2
CDS CAA 90 bp TTTGATGGAGAAATCAATGTCTCCAACCAGTTTGTCTTCTTTATCTaGATTAACTGGGCATGGTGTAAGACTTGGGCTGAAGGCCATGAG +
Preference number: 6 (lower is better)
Translates to: FDGEINVSNQFVFFI*INWAWCKTWAEGHE
Trigger: CTCATGGCCTTCAGCCCAAGTCTTACACCATGCCCAGTTAATCAAGATAAAGAAGACAAACTGGTTGGAGACATTGATTTCTCCATCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192503.2