Pregenerated sensors for PCDHA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000104148

Ensembl transcript IDs: ENSMUST00000115662.9, ENSMUST00000195590.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	ATGCTTGAAGCACAGGGCAGAGAGTCCAACTCTCACTGGCGGGGCTaGGAAGCTTCTCCTTTGCGGCGGGGGAGAAAGGAAACCTGGGTC	+
Preference number: 1 (lower is better) Translates to: MLEAQGRESNSHWRG*EASPLRRGRKETWV Trigger: GACCCAGGTTTCCTTTCTCCCCCGCCGCAAAGGAGAAGCTTCCCAGCCCCGCCAGTGAGAGTTGGACTCTCTGCCCTGTGCTTCAAGCAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115662.9
3UTR CCA 90 bp	CAAGACAGGATGCTTGAAGCACAGGGCAGAGAGTCCAACTCTCACTaGCGGGGCTGGGAAGCTTCTCCTTTGCGGCGGGGGAGAAAGGAA	+
Preference number: 1 (lower is better) Translates to: QDRMLEAQGRESNSH*RGWEASPLRRGRKE Trigger: TTCCTTTCTCCCCCGCCGCAAAGGAGAAGCTTCCCAGCCCCGCCAGTGAGAGTTGGACTCTCTGCCCTGTGCTTCAAGCATCCTGTCTTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115662.9
3UTR GCA 90 bp	CCTGAATACCTTTCAGCCTGCCCTGCAAATATCATCAAGACAGGATaGTTGAAGCACAGGGCAGAGAGTCCAACTCTCACTGGCGGGGCT	+
Preference number: 1 (lower is better) Translates to: PEYLSACPANIIKTG*LKHRAESPTLTGGA Trigger: AGCCCCGCCAGTGAGAGTTGGACTCTCTGCCCTGTGCTTCAAGCATCCTGTCTTGATGATATTTGCAGGGCAGGCTGAAAGGTATTCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115662.9
3UTR GCA 90 bp	AGTGACCACAAACACCCAACTGCTCAACCTGAATACCTTTCAGCCTaGCCTGCAAATATCATCAAGACAGGATGCTTGAAGCACAGGGCA	+
Preference number: 1 (lower is better) Translates to: SDHKHPTAQPEYLSA*PANIIKTGCLKHRA Trigger: TGCCCTGTGCTTCAAGCATCCTGTCTTGATGATATTTGCAGGGCAGGCTGAAAGGTATTCAGGTTGAGCAGTTGGGTGTTTGTGGTCACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115662.9 ENSMUST00000195590.2
3UTR GCA 90 bp	TCTGCTTCTGTTGCCCTGGCCGACCCTCTTGTTAAACGCTTGAACTaGTGGCTCGTGTGCATACTGCAGGTTTTGAATACAGTGATGTTA	+
Preference number: 1 (lower is better) Translates to: SASVALADPLVKRLN*WLVCILQVLNTVML Trigger: TAACATCACTGTATTCAAAACCTGCAGTATGCACACGAGCCAGCAGTTCAAGCGTTTAACAAGAGGGTCGGCCAGGGCAACAGAAGCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115662.9 ENSMUST00000195590.2
3UTR CCA 90 bp	CCGGATAGCATTTCAAAGCAGTCTGCAAATTCAAAGAGGTCAGATTaGTACAATTTTGTGCTTGCATACCCTCAGGGACTTTCTTCAGTA	+
Preference number: 1 (lower is better) Translates to: PDSISKQSANSKRSD*YNFVLAYPQGLSSV Trigger: TACTGAAGAAAGTCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTTGCAGACTGCTTTGAAATGCTATCCGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115662.9 ENSMUST00000195590.2
3UTR CCA 90 bp	TCTGCTCACTGTATGCATGAGAAAACAAGATTTTTCTTCAGTTTCTaGGTCTTGATATCGTGGGTTAGAGAAGGTTGTGTAATCAAAGTG	+
Preference number: 1 (lower is better) Translates to: SAHCMHEKTRFFFSF*VLISWVREGCVIKV Trigger: CACTTTGATTACACAACCTTCTCTAACCCACGATATCAAGACCCAGAAACTGAAGAAAAATCTTGTTTTCTCATGCATACAGTGAGCAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000115662.9 ENSMUST00000195590.2
CDS CCA 90 bp	TGTGCATGCCTGCTCTTAGCGAGGCAGAGTAGCGCCAGTCAGGGTTaGGCTGCCGGGGCTTTCCTAAGTATTCGGCCTCTAAGGGTGGTT	+
Preference number: 5 (lower is better) Translates to: CACLLLARQSSASQG*AAGAFLSIRPLRVV Trigger: AACCACCCTTAGAGGCCGAATACTTAGGAAAGCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAGGCATGCACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115662.9 ENSMUST00000195590.2
CDS TCA 90 bp	TCTAACTCTCCCTTAGTTCTGACTTCTCCTGAGTTGGGGTCGATTTaGAACTTAGTCCGTGTGGTGGAAGACACATCACTACCGAGTGAA	+
Preference number: 5 (lower is better) Translates to: SNSPLVLTSPELGSI*NLVRVVEDTSLPSE Trigger: TTCACTCGGTAGTGATGTGTCTTCCACCACACGGACTAAGTTTCAAATCGACCCCAACTCAGGAGAAGTCAGAACTAAGGGAGAGTTAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115662.9 ENSMUST00000195590.2
CDS TCA 90 bp	TGGCCAGCAGCATCTACCAACGCTCTTGATGAAGTTTTTGGAGCTTaGCTATTCTCAACTAGAGAAACTAACACTGTGGCTGTGGCAGTC	+
Preference number: 5 (lower is better) Translates to: WPAASTNALDEVFGA*LFSTRETNTVAVAV Trigger: GACTGCCACAGCCACAGTGTTAGTTTCTCTAGTTGAGAATAGTCAAGCTCCAAAAACTTCATCAAGAGCGTTGGTAGATGCTGCTGGCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000115662.9 ENSMUST00000195590.2
CDS CCA 72 bp	CTGCTCTTAGCGAGGCAGAGTAGCGCCAGTCAGGGTTaGGCTGCCGGGGCTTTCCTAAGTATTCGGCCTCTA	+
Preference number: 6 (lower is better) Translates to: LLLARQSSASQG*AAGAFLSIRPL Trigger: TAGAGGCCGAATACTTAGGAAAGCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115662.9 ENSMUST00000195590.2
CDS TCA 72 bp	CCCTTAGTTCTGACTTCTCCTGAGTTGGGGTCGATTTaGAACTTAGTCCGTGTGGTGGAAGACACATCACTA	+
Preference number: 6 (lower is better) Translates to: PLVLTSPELGSI*NLVRVVEDTSL Trigger: TAGTGATGTGTCTTCCACCACACGGACTAAGTTTCAAATCGACCCCAACTCAGGAGAAGTCAGAACTAAGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115662.9 ENSMUST00000195590.2
CDS CAA 72 bp	GAGACGCCTCTTGGCCAGCAGCATCTACCAACGCTCTaGATGAAGTTTTTGGAGCTTGACTATTCTCAACTA	+
Preference number: 6 (lower is better) Translates to: ETPLGQQHLPTL*MKFLELDYSQL Trigger: TAGTTGAGAATAGTCAAGCTCCAAAAACTTCATCAAGAGCGTTGGTAGATGCTGCTGGCCAAGAGGCGTCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000115662.9 ENSMUST00000195590.2
CDS CAA 72 bp	CCAGCACAAGAAACAGAGATTGGCTTAGTTCGTCGCTaGTTTGAACATCTAGAAAGAAAAGCTCACTGGGGC	+
Preference number: 6 (lower is better) Translates to: PAQETEIGLVRR*FEHLERKAHWG Trigger: GCCCCAGTGAGCTTTTCTTTCTAGATGTTCAAACAAGCGACGAACTAAGCCAATCTCTGTTTCTTGTGCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115662.9 ENSMUST00000195590.2
CDS TCA 72 bp	TTGTTTGAACATCTAGAAAGAAAAGCTCACTGGGGCTaGGCTTGTAGGACAGAAGAGCATTTACTCCGATAT	+
Preference number: 6 (lower is better) Translates to: LFEHLERKAHWG*ACRTEEHLLRY Trigger: ATATCGGAGTAAATGCTCTTCTGTCCTACAAGCTCAGCCCCAGTGAGCTTTTCTTTCTAGATGTTCAAACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115662.9 ENSMUST00000195590.2