Pregenerated sensors for PCDHA12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000103310Ensembl transcript IDs: ENSMUST00000047614.4
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AGAAAGTCTGGTCCTTGTAAGTTTCACATTTTCCCCCTCCAGATGAAAGACTCCCCAGCACCGTGGCTGTaGCGGTCAGTGCGGGCTCGC | + |
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Preference number: 4 (lower is better) Translates to: RKSGPCKFHIFPLQMKDSPAPWL*RSVRAR Trigger: GCGAGCCCGCACTGACCGCCACAGCCACGGTGCTGG...GGAGTCTTTCATCTGGAGGGGGAAAATGTGAAACTTACAAGGACCAGACTTTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR TCA 90 bp | CACGTAAGGTCAGTTACATGGGCTTCAGTGGGGCAAAATGATCACAACCTACAACTGCCTCCCAGGTTGTaGGGAGCAGGAACGAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: HVRSVTWASVGQNDHNLQLPPRL*GAGTRA Trigger: TGCTCTCGTTCCTGCTCCTCACAACCTGGGAGGCAG...TTGTAGGTTGTGATCATTTTGCCCCACTGAAGCCCATGTAACTGACCTTACGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR GCA 90 bp | ACAGGAAACACATCAGATCTGCTTCTGTTGCCCTGGCCGACCCTCTTGTTAAACGCGCATGCCCCCTGCTaGCAACTGAAGCTCATAAGA | + |
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Preference number: 4 (lower is better) Translates to: TGNTSDLLLLPWPTLLLNAHAPC*QLKLIR Trigger: TCTTATGAGCTTCAGTTGGCAGCAGGGGGCATGCGC...GTTTAACAAGAGGGTCGGCCAGGGCAACAGAAGCAGATCTGATGTGTTTCCTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR GCA 90 bp | ACAGGAAACACATCAGATCTGCTTCTGTTGCCCTGGCCGACCCTCTTGTTAAACCAGTCAGGGTTGGGCTaGCGGGGCTCTTTCAAATGT | + |
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Preference number: 4 (lower is better) Translates to: TGNTSDLLLLPWPTLLLNQSGLG*RGSFKC Trigger: ACATTTGAAAGAGCCCCGGCAGCCCAACCCTGACTG...GTTTAACAAGAGGGTCGGCCAGGGCAACAGAAGCAGATCTGATGTGTTTCCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR CCA 90 bp | AGAAAGTCTGGTCCTTGTAAGTTTCACATTTTCCCCCTCCAGATGAAAGACTCCAGCGCCAGTCAGGGTTaGGCTGCCGGGGCTCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: RKSGPCKFHIFPLQMKDSSASQG*AAGALS Trigger: TGAAAGAGCCCCGGCAGCCCAACCCTGACTGGCGCT...GGAGTCTTTCATCTGGAGGGGGAAAATGTGAAACTTACAAGGACCAGACTTTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR GCA 90 bp | ACAGGAAACACATCAGATCTGCTTCTGTTGCCCTGGCCGACCCTCTTGTTAAACTCCAGCACAAACACCTaGAGAGTCACATTACTGCCC | + |
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Preference number: 4 (lower is better) Translates to: TGNTSDLLLLPWPTLLLNSSTNT*RVTLLP Trigger: GGGCAGTAATGTGACTCTGCAGGTGTTTGTGCTGGA...GTTTAACAAGAGGGTCGGCCAGGGCAACAGAAGCAGATCTGATGTGTTTCCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR TCA 90 bp | AAACACCCAACTGCTCAACCTGAATACCTTTCAGCCTGCCCTGCAAATATCATCATGGTGATCAGCAGCTaGACTGTGCCAGTCAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: KHPTAQPEYLSACPANIIMVISS*TVPVSS Trigger: GGAACTGACTGGCACAGTTCAGCTGCTGATCACCAT...GATGATATTTGCAGGGCAGGCTGAAAGGTATTCAGGTTGAGCAGTTGGGTGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR TCA 90 bp | AAACACCCAACTGCTCAACCTGAATACCTTTCAGCCTGCCCTGCAAATATCATCATGACAGTGCTTGGCTaGGCATCTTCTCTGACTGGG | + |
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Preference number: 4 (lower is better) Translates to: KHPTAQPEYLSACPANIIMTVLG*ASSLTG Trigger: CCCAGTCAGAGAAGATGCTCAGCCAAGCACTGTCAT...GATGATATTTGCAGGGCAGGCTGAAAGGTATTCAGGTTGAGCAGTTGGGTGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR GCA 90 bp | AAACAAGCCAGAGTGGAGAGAGAGAGAGTTAACACCAGACTTAGGAAAGCTTTTAGAGTCCGCATCTACTaGCCGCACCTTCGCCACTAC | + |
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Preference number: 4 (lower is better) Translates to: KQARVERERVNTRLRKAFRVRIY*PHLRHY Trigger: GTAGTGGCGAAGGTGCGGGCAGTAGATGCGGACTCT...AAAAGCTTTCCTAAGTCTGGTGTTAACTCTCTCTCTCTCCACTCTGGCTTGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR TCA 90 bp | AGAAAGTCTGGTCCTTGTAAGTTTCACATTTTCCCCCTCCAGATGAAAGACTCCACCTGCCTTTCTCTCTaGCATGTGTCCTCTGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: RKSGPCKFHIFPLQMKDSTCLSL*HVSSAE Trigger: CTCTGCAGAGGACACATGTCAGAGAGAAAGGCAGGT...GGAGTCTTTCATCTGGAGGGGGAAAATGTGAAACTTACAAGGACCAGACTTTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR GCA 90 bp | ACAGGAAACACATCAGATCTGCTTCTGTTGCCCTGGCCGACCCTCTTGTTAAACGGAATCTATATTAAATaGATGCACCACCGCAGGGGA | + |
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Preference number: 4 (lower is better) Translates to: TGNTSDLLLLPWPTLLLNGIYIK*MHHRRG Trigger: TCCCCTGCGGTGGTGCATGCATTTAATATAGATTCC...GTTTAACAAGAGGGTCGGCCAGGGCAACAGAAGCAGATCTGATGTGTTTCCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR GCA 90 bp | CAGGCAATTCTCTTAAAGCACTTCTGTAGCAGCAACGATCATTTCAAATGGCTGCCTCCGAAGATGCTGTaGTCTCCGAAGCAAGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: QAILLKHFCSSNDHFKWLPPKML*SPKQGK Trigger: CTTCCCTTGCTTCGGAGAGCACAGCATCTTCGGAGG...CAGCCATTTGAAATGATCGTTGCTGCTACAGAAGTGCTTTAAGAGAATTGCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR CCA 90 bp | ACAGGAAACACATCAGATCTGCTTCTGTTGCCCTGGCCGACCCTCTTGTTAAACACCAGAAGGGTACAATaGCCTGTCATTGGAATATTG | + |
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Preference number: 4 (lower is better) Translates to: TGNTSDLLLLPWPTLLLNTRRVQ*PVIGIL Trigger: CAATATTCCAATGACAGGCCATTGTACCCTTCTGGT...GTTTAACAAGAGGGTCGGCCAGGGCAACAGAAGCAGATCTGATGTGTTTCCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR TCA 90 bp | TACAATTTTGTGCTTGCATACCCTCAGGGACTTTCTTCAGTATTTATTCCAGAAATCCGCATCCATCGCTaGCACCGTGAAGATGTGCGC | + |
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Preference number: 4 (lower is better) Translates to: YNFVLAYPQGLSSVFIPEIRIHR*HREDVR Trigger: GCGCACATCTTCACGGTGTCAGCGATGGATGCGGAT...TTCTGGAATAAATACTGAAGAAAGTCCCTGAGGGTATGCAAGCACAAAATTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR GCA 90 bp | ATTGTGTGCAAAAGAATTTTTAATAGCGTGAGCACAAGGACGTGTACAGGAAACTCAGCAGCTGAACTGTaGCAGTCAGTTCCGGTTTGC | + |
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Preference number: 4 (lower is better) Translates to: IVCKRIFNSVSTRTCTGNSAAEL*QSVPVC Trigger: GCAAACCGGAACTGACTGGCACAGTTCAGCTGCTGA...GTTTCCTGTACACGTCCTTGTGCTCACGCTATTAAAAATTCTTTTGCACACAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR GCA 90 bp | CACGTAAGGTCAGTTACATGGGCTTCAGTGGGGCAAAATGATCACAACCTACAACTGTCATTGGAATATTaGCTTTGTCTACTGCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: HVRSVTWASVGQNDHNLQLSLEY*LCLLPP Trigger: TGGAGGCAGTAGACAAAGGCAATATTCCAATGACAG...TTGTAGGTTGTGATCATTTTGCCCCACTGAAGCCCATGTAACTGACCTTACGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR CCA 90 bp | CACGTAAGGTCAGTTACATGGGCTTCAGTGGGGCAAAATGATCACAACCTACAATTCAGGGAACACAGGTaGATTGTCATTAATGTCCCT | + |
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Preference number: 4 (lower is better) Translates to: HVRSVTWASVGQNDHNLQFREHR*IVINVP Trigger: AGGGACATTAATGACAATCCACCTGTGTTCCCTGAA...TTGTAGGTTGTGATCATTTTGCCCCACTGAAGCCCATGTAACTGACCTTACGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR GCA 90 bp | CACGTAAGGTCAGTTACATGGGCTTCAGTGGGGCAAAATGATCACAACCTACAAAATCGTGACCTCTGGTaGATTATCATTTACATCCAG | + |
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Preference number: 4 (lower is better) Translates to: HVRSVTWASVGQNDHNLQNRDLW*IIIYIQ Trigger: CTGGATGTAAATGATAATGCACCAGAGGTCACGATT...TTGTAGGTTGTGATCATTTTGCCCCACTGAAGCCCATGTAACTGACCTTACGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR GCA 90 bp | ATTGTGTGCAAAAGAATTTTTAATAGCGTGAGCACAAGGACGTGTACAGGAAACAAAGAGCAAGTCACCTaGCCGTTGTCACCAGAGTCT | + |
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Preference number: 4 (lower is better) Translates to: IVCKRIFNSVSTRTCTGNKEQVT*PLSPES Trigger: AGACTCTGGTGACAACGGGCAGGTGACTTGCTCTTT...GTTTCCTGTACACGTCCTTGTGCTCACGCTATTAAAAATTCTTTTGCACACAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR CCA 90 bp | AAACAAGCCAGAGTGGAGAGAGAGAGAGTTAACACCAGACTTAGGAAAGCTTTTAAGCGAAATAATCGCTaGGATCCAATCGGTAGGTCA | + |
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Preference number: 4 (lower is better) Translates to: KQARVERERVNTRLRKAFKRNNR*DPIGRS Trigger: TGACCTACCGATTGGATCCCAGCGATTATTTCGCTT...AAAAGCTTTCCTAAGTCTGGTGTTAACTCTCTCTCTCTCCACTCTGGCTTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR CCA 90 bp | AAACAAGCCAGAGTGGAGAGAGAGAGAGTTAACACCAGACTTAGGAAAGCTTTTACAATGGCCTGTCATTaGAATATTGCCTTTGTCTAC | + |
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Preference number: 4 (lower is better) Translates to: KQARVERERVNTRLRKAFTMACH*NIAFVY Trigger: GTAGACAAAGGCAATATTCCAATGACAGGCCATTGT...AAAAGCTTTCCTAAGTCTGGTGTTAACTCTCTCTCTCTCCACTCTGGCTTGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR CCA 90 bp | ATTGTGTGCAAAAGAATTTTTAATAGCGTGAGCACAAGGACGTGTACAGGAAACTCACGATGTTTTTGTTaGTTTCAGGGAACACAGGTG | + |
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Preference number: 4 (lower is better) Translates to: IVCKRIFNSVSTRTCTGNSRCFC*FQGTQV Trigger: CACCTGTGTTCCCTGAAACCAACAAAAACATCGTGA...GTTTCCTGTACACGTCCTTGTGCTCACGCTATTAAAAATTCTTTTGCACACAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR CAA 90 bp | ACAGGAAACACATCAGATCTGCTTCTGTTGCCCTGGCCGACCCTCTTGTTAAACCTCCATCTGTGGACCTaGCTGAGCAGCGCAGCGCAG | + |
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Preference number: 5 (lower is better) Translates to: TGNTSDLLLLPWPTLLLNLHLWT*LSSAAQ Trigger: CTGCGCTGCGCTGCTCAGCAAGGTCCACAGATGGAG...GTTTAACAAGAGGGTCGGCCAGGGCAACAGAAGCAGATCTGATGTGTTTCCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS TCA 90 bp | TTGGGCTGCCGGGGCTCTTTCAAATGTTCTACCTGCCTTTCTCTCTaGCATGTGTCCTCTGCAGAGCCTAACACAGGAGGGAGACTAGGA | + |
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Preference number: 5 (lower is better) Translates to: LGCRGSFKCSTCLSL*HVSSAEPNTGGRLG Trigger: TCCTAGTCTCCCTCCTGTGTTAGGCTCTGCAGAGGACACATGTCAGAGAGAAAGGCAGGTAGAACATTTGAAAGAGCCCCGGCAGCCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR CAA 90 bp | CACGTAAGGTCAGTTACATGGGCTTCAGTGGGGCAAAATGATCACAACCTACAAGCGAATGCAGGAGCATaGTCGTTCACATCAGCCACC | + |
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Preference number: 5 (lower is better) Translates to: HVRSVTWASVGQNDHNLQANAGA*SFTSAT Trigger: GGTGGCTGATGTGAACGACAATGCTCCTGCATTCGC...TTGTAGGTTGTGATCATTTTGCCCCACTGAAGCCCATGTAACTGACCTTACGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR CAA 90 bp | AAACACCCAACTGCTCAACCTGAATACCTTTCAGCCTGCCCTGCAAATATCATCGCAATCACGATGTTTTaGTTGGTTTCAGGGAACACA | + |
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Preference number: 5 (lower is better) Translates to: KHPTAQPEYLSACPANIIAITMF*LVSGNT Trigger: TGTGTTCCCTGAAACCAACAAAAACATCGTGATTGC...GATGATATTTGCAGGGCAGGCTGAAAGGTATTCAGGTTGAGCAGTTGGGTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR CAA 90 bp | ATTGTGTGCAAAAGAATTTTTAATAGCGTGAGCACAAGGACGTGTACAGGAAACAATAGCGTGGGCGCATaGTCATTCTCATCCAGCACA | + |
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Preference number: 5 (lower is better) Translates to: IVCKRIFNSVSTRTCTGNNSVGA*SFSSST Trigger: TGTGCTGGATGAGAATGACAATGCGCCCACGCTATT...GTTTCCTGTACACGTCCTTGTGCTCACGCTATTAAAAATTCTTTTGCACACAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR CAA 90 bp | ATAAATTATAGCCCGATTCTCCTAGTTCAAAAGGCACGTAAGGTCAGTTACATGATTGGAATATTGCCTTaGTCTACTGCCTCCACGGGT | + |
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Preference number: 5 (lower is better) Translates to: INYSPILLVQKARKVSYMIGILP*STASTG Trigger: ACCCGTGGAGGCAGTAGACAAAGGCAATATTCCAAT...CATGTAACTGACCTTACGTGCCTTTTGAACTAGGAGAATCGGGCTATAATTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR CAA 90 bp | ATTGTGTGCAAAAGAATTTTTAATAGCGTGAGCACAAGGACGTGTACAGGAAACCCTGTCATTGGAATATaGCCTTTGTCTACTGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: IVCKRIFNSVSTRTCTGNPVIGI*PLSTAS Trigger: GGAGGCAGTAGACAAAGGCAATATTCCAATGACAGG...GTTTCCTGTACACGTCCTTGTGCTCACGCTATTAAAAATTCTTTTGCACACAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR CAA 90 bp | AAACAAGCCAGAGTGGAGAGAGAGAGAGTTAACACCAGACTTAGGAAAGCTTTTTACAATGGCCTGTCATaGGAATATTGCCTTTGTCTA | + |
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Preference number: 5 (lower is better) Translates to: KQARVERERVNTRLRKAFYNGLS*EYCLCL Trigger: TAGACAAAGGCAATATTCCAATGACAGGCCATTGTA...AAAAGCTTTCCTAAGTCTGGTGTTAACTCTCTCTCTCTCCACTCTGGCTTGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS-3UTR CAA 90 bp | TACAATTTTGTGCTTGCATACCCTCAGGGACTTTCTTCAGTATTTATTCCAGAAATCACGATGTTTTTGTaGGTTTCAGGGAACACAGGT | + |
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Preference number: 5 (lower is better) Translates to: YNFVLAYPQGLSSVFIPEITMFL*VSGNTG Trigger: ACCTGTGTTCCCTGAAACCAACAAAAACATCGTGAT...TTCTGGAATAAATACTGAAGAAAGTCCCTGAGGGTATGCAAGCACAAAATTGTA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS TCA 72 bp | AGTTCGCTCACTGTCCCGACAGCTCCAACGGCTCTGTaGGGCAATAGCGTGGGCGCATTGTCATTCTCATCC | + |
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Preference number: 6 (lower is better) Translates to: SSLTVPTAPTAL*GNSVGALSFSS Trigger: GGATGAGAATGACAATGCGCCCACGCTATTGCCTCACAGAGCCGTTGGAGCTGTCGGGACAGTGAGCGAACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS CAA 72 bp | GAAGATGCTGTGCTCTCCGAAGCAAGGGAAGATATCTaGGGTGCTTGGCCATTCTCCACCAGAGACACCAGC | + |
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Preference number: 6 (lower is better) Translates to: EDAVLSEAREDI*GAWPFSTRDTS Trigger: GCTGGTGTCTCTGGTGGAGAATGGCCAAGCACCCAAGATATCTTCCCTTGCTTCGGAGAGCACAGCATCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS TCA 72 bp | CGGGGCTCTTTCAAATGTTCTACCTGCCTTTCTCTCTaGCATGTGTCCTCTGCAGAGCCTAACACAGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: RGSFKCSTCLSL*HVSSAEPNTGG Trigger: CCCTCCTGTGTTAGGCTCTGCAGAGGACACATGTCAGAGAGAAAGGCAGGTAGAACATTTGAAAGAGCCCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS GCA 72 bp | CTAACTTCTCCACTGTTGGAATCTATATTAAATGCATaGACCACCGCAGGGGATACAGGCCGTCTGAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: LTSPLLESILNA*TTAGDTGRLKE Trigger: CTCCTTCAGACGGCCTGTATCCCCTGCGGTGGTGCATGCATTTAATATAGATTCCAACAGTGGAGAAGTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS GCA 72 bp | TGTCCTAACTTCTCCACTGTTGGAATCTATATTAAATaGATGCACCACCGCAGGGGATACAGGCCGTCTGAA | + |
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Preference number: 6 (lower is better) Translates to: CPNFSTVGIYIK*MHHRRGYRPSE Trigger: TTCAGACGGCCTGTATCCCCTGCGGTGGTGCATGCATTTAATATAGATTCCAACAGTGGAGAAGTTAGGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS GCA 72 bp | CCACCAGAAGGGTACAATGGCCTGTCATTGGAATATTaGCTTTGTCTACTGCCTCCACGGGTATCTCATATA | + |
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Preference number: 6 (lower is better) Translates to: PPEGYNGLSLEY*LCLLPPRVSHI Trigger: TATATGAGATACCCGTGGAGGCAGTAGACAAAGGCAATATTCCAATGACAGGCCATTGTACCCTTCTGGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS CAA 72 bp | TCCACCAGAAGGGTACAATGGCCTGTCATTGGAATATaGCCTTTGTCTACTGCCTCCACGGGTATCTCATAT | + |
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Preference number: 6 (lower is better) Translates to: STRRVQWPVIGI*PLSTASTGISY Trigger: ATATGAGATACCCGTGGAGGCAGTAGACAAAGGCAATATTCCAATGACAGGCCATTGTACCCTTCTGGTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS CAA 90 bp | ATTTCTTCGAAATCCAGTAGCCCCTTTGTCCTAACTTCTCCACTGTaGGAATCTATATTAAATGCATGCACCACCGCAGGGGATACAGGC | + |
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Preference number: 6 (lower is better) Translates to: ISSKSSSPFVLTSPL*ESILNACTTAGDTG Trigger: GCCTGTATCCCCTGCGGTGGTGCATGCATTTAATATAGATTCCAACAGTGGAGAAGTTAGGACAAAGGGGCTACTGGATTTCGAAGAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS CAA 72 bp | TCTGGAGGTCTCGACTCGGCAATCACGATGTTTTTGTaGGTTTCAGGGAACACAGGTGGATTGTCATTAATG | + |
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Preference number: 6 (lower is better) Translates to: SGGLDSAITMFL*VSGNTGGLSLM Trigger: CATTAATGACAATCCACCTGTGTTCCCTGAAACCAACAAAAACATCGTGATTGCCGAGTCGAGACCTCCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS CAA 72 bp | GTTTCTGGAGGTCTCGACTCGGCAATCACGATGTTTTaGTTGGTTTCAGGGAACACAGGTGGATTGTCATTA | + |
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Preference number: 6 (lower is better) Translates to: VSGGLDSAITMF*LVSGNTGGLSL Trigger: TAATGACAATCCACCTGTGTTCCCTGAAACCAACAAAAACATCGTGATTGCCGAGTCGAGACCTCCAGAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS CAA 72 bp | AAATCCAGTAGCCCCTTTGTCCTAACTTCTCCACTGTaGGAATCTATATTAAATGCATGCACCACCGCAGGG | + |
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Preference number: 6 (lower is better) Translates to: KSSSPFVLTSPL*ESILNACTTAG Trigger: CCCTGCGGTGGTGCATGCATTTAATATAGATTCCAACAGTGGAGAAGTTAGGACAAAGGGGCTACTGGATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS CAA 72 bp | AGAAGGGTACAATGGCCTGTCATTGGAATATTGCCTTaGTCTACTGCCTCCACGGGTATCTCATATAGTTTA | + |
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Preference number: 6 (lower is better) Translates to: RRVQWPVIGILP*STASTGISYSL Trigger: TAAACTATATGAGATACCCGTGGAGGCAGTAGACAAAGGCAATATTCCAATGACAGGCCATTGTACCCTTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS CAA 90 bp | AATTCCACCAGAAGGGTACAATGGCCTGTCATTGGAATATTGCCTTaGTCTACTGCCTCCACGGGTATCTCATATAGTTTAATTTCTTCG | + |
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Preference number: 6 (lower is better) Translates to: NSTRRVQWPVIGILP*STASTGISYSLISS Trigger: CGAAGAAATTAAACTATATGAGATACCCGTGGAGGCAGTAGACAAAGGCAATATTCCAATGACAGGCCATTGTACCCTTCTGGTGGAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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| CDS CAA 90 bp | TCCAGTAATTCCACCAGAAGGGTACAATGGCCTGTCATTGGAATATaGCCTTTGTCTACTGCCTCCACGGGTATCTCATATAGTTTAATT | + |
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Preference number: 6 (lower is better) Translates to: SSNSTRRVQWPVIGI*PLSTASTGISYSLI Trigger: AATTAAACTATATGAGATACCCGTGGAGGCAGTAGACAAAGGCAATATTCCAATGACAGGCCATTGTACCCTTCTGGTGGAATTACTGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047614.4 |
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