Pregenerated sensors for PCDHA11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000102206Ensembl transcript IDs: ENSMUST00000115657.10, ENSMUST00000115658.6, ENSMUST00000192447.6
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | GTTGCCCTGGCCGACCCTCTTGTTAAACGCTTGAACTaGTGGCTCGTGTGCATACTGCAGGTTTTGAATACA | + |
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Preference number: 3 (lower is better) Translates to: VALADPLVKRLN*WLVCILQVLNT Trigger: TGTATTCAAAACCTGCAGTATGCACACGAGCCAGCAGTTCAAGCGTTTAACAAGAGGGTCGGCCAGGGCAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000115657.10 ENSMUST00000115658.6 ENSMUST00000192447.6 |
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| 3UTR GCA 72 bp | AAACACCCAACTGCTCAACCTGAATACCTTTCAGCCTaGCCTGCAAATATCATCAAGACAGGATGCTTGAAG | + |
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Preference number: 3 (lower is better) Translates to: KHPTAQPEYLSA*PANIIKTGCLK Trigger: CTTCAAGCATCCTGTCTTGATGATATTTGCAGGGCAGGCTGAAAGGTATTCAGGTTGAGCAGTTGGGTGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000115657.10 ENSMUST00000115658.6 ENSMUST00000192447.6 |
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| 3UTR GCA 72 bp | GAGAAAGGAGCGGGGAGTTGCTACATGGGAGAGATTTaGCATTATTACAAAAACTGGCTAAGTGGCTTGTTT | + |
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Preference number: 3 (lower is better) Translates to: EKGAGSCYMGEI*HYYKNWLSGLF Trigger: AAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAGCAACTCCCCGCTCCTTTCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000115657.10 ENSMUST00000115658.6 |
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| 3UTR GCA 72 bp | AAATTCAAAGAGGTCAGATTGGTACAATTTTGTGCTTaGATACCCTCAGGGACTTTCTTCAGTATTTATTCC | + |
|
Preference number: 3 (lower is better) Translates to: KFKEVRLVQFCA*IPSGTFFSIYS Trigger: GGAATAAATACTGAAGAAAGTCCCTGAGGGTATGCAAGCACAAAATTGTACCAATCTGACCTCTTTGAATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000115657.10 ENSMUST00000115658.6 ENSMUST00000192447.6 |
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| CDS CCA 90 bp | TGTGCATGCCTGCTCTTAGCGAGGCAGAGTAGCGCCAGTCAGGGTTaGGCTGCCGGGGCTGTCCAGGGTGACTTGACTCTGACTCCTGTC | + |
|
Preference number: 5 (lower is better) Translates to: CACLLLARQSSASQG*AAGAVQGDLTLTPV Trigger: GACAGGAGTCAGAGTCAAGTCACCCTGGACAGCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAGGCATGCACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115657.10 ENSMUST00000192447.6 |
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| CDS TCA 90 bp | GGGGAGTTGTCATTGGTGTCTAAGATTTCTACCAAGACTACACAGTaGCCTACCATTGGAGGTGTTCCTTTATCCGTGGCCAGCACTTCT | + |
|
Preference number: 5 (lower is better) Translates to: GELSLVSKISTKTTQ*PTIGGVPLSVASTS Trigger: AGAAGTGCTGGCCACGGATAAAGGAACACCTCCAATGGTAGGTCACTGTGTAGTCTTGGTAGAAATCTTAGACACCAATGACAACTCCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115657.10 ENSMUST00000192447.6 |
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| CDS CCA 90 bp | CTGGGAGGGACAGCGAAGTTAATGTCACTTCAGGGGAGTTGTCATTaGTGTCTAAGATTTCTACCAAGACTACACAGTGACCTACCATTG | + |
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Preference number: 5 (lower is better) Translates to: LGGTAKLMSLQGSCH*CLRFLPRLHSDLPL Trigger: CAATGGTAGGTCACTGTGTAGTCTTGGTAGAAATCTTAGACACCAATGACAACTCCCCTGAAGTGACATTAACTTCGCTGTCCCTCCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115657.10 ENSMUST00000192447.6 |
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| CDS CAA 72 bp | AGTCAGGGTTGGGCTGCCGGGGCTGTCCAGGGTGACTaGACTCTGACTCCTGTCTTTCCCTTTCATCTCTAC | + |
|
Preference number: 6 (lower is better) Translates to: SQGWAAGAVQGD*TLTPVFPFHLY Trigger: GTAGAGATGAAAGGGAAAGACAGGAGTCAGAGTCAAGTCACCCTGGACAGCCCCGGCAGCCCAACCCTGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115657.10 ENSMUST00000192447.6 |
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| CDS TCA 72 bp | GCTGCGTACGCCACCTGTTCCCAACTGTACTTCATATaGCAGCCAAGCATTGTAACCAGAGTCGGCATCCAC | + |
|
Preference number: 6 (lower is better) Translates to: AAYATCSQLYFI*QPSIVTRVGIH Trigger: GTGGATGCCGACTCTGGTTACAATGCTTGGCTGTCATATGAAGTACAGTTGGGAACAGGTGGCGTACGCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115657.10 ENSMUST00000192447.6 |
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| CDS CAA 72 bp | GGGCTGAAGCACGACCTGATGCCTGTGAAAAGGACTTaGGAGCTTGGCCGCTTTCCACAAGAGACACTAAAA | + |
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Preference number: 6 (lower is better) Translates to: GLKHDLMPVKRT*ELGRFPQETLK Trigger: TTTTAGTGTCTCTTGTGGAAAGCGGCCAAGCTCCAAAGTCCTTTTCACAGGCATCAGGTCGTGCTTCAGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115657.10 ENSMUST00000192447.6 |
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| CDS CCA 72 bp | GCACGACCTGATGCCTGTGAAAAGGACTTTGGAGCTTaGCCGCTTTCCACAAGAGACACTAAAACAGTTGCA | + |
|
Preference number: 6 (lower is better) Translates to: ARPDACEKDFGA*PLSTRDTKTVA Trigger: TGCAACTGTTTTAGTGTCTCTTGTGGAAAGCGGCCAAGCTCCAAAGTCCTTTTCACAGGCATCAGGTCGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115657.10 ENSMUST00000192447.6 |
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| CDS TCA 72 bp | TCATTGGTGTCTAAGATTTCTACCAAGACTACACAGTaGCCTACCATTGGAGGTGTTCCTTTATCCGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: SLVSKISTKTTQ*PTIGGVPLSVA Trigger: GGCCACGGATAAAGGAACACCTCCAATGGTAGGTCACTGTGTAGTCTTGGTAGAAATCTTAGACACCAATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115657.10 ENSMUST00000192447.6 |
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| CDS CAA 72 bp | CTAAGATTTCTACCAAGACTACACAGTGACCTACCATaGGAGGTGTTCCTTTATCCGTGGCCAGCACTTCTA | + |
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Preference number: 6 (lower is better) Translates to: LRFLPRLHSDLP*EVFLYPWPALL Trigger: TAGAAGTGCTGGCCACGGATAAAGGAACACCTCCAATGGTAGGTCACTGTGTAGTCTTGGTAGAAATCTTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115657.10 ENSMUST00000192447.6 |
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| CDS CAA 72 bp | GGGAGGGACAGCGAAGTTAATGTCACTTCAGGGGAGTaGTCATTGGTGTCTAAGATTTCTACCAAGACTACA | + |
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Preference number: 6 (lower is better) Translates to: GRDSEVNVTSGE*SLVSKISTKTT Trigger: TGTAGTCTTGGTAGAAATCTTAGACACCAATGACAACTCCCCTGAAGTGACATTAACTTCGCTGTCCCTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115657.10 ENSMUST00000192447.6 |
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| CDS CAA 90 bp | CATTGGTGTCTAAGATTTCTACCAAGACTACACAGTGACCTACCATaGGAGGTGTTCCTTTATCCGTGGCCAGCACTTCTATTTCATACA | + |
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Preference number: 6 (lower is better) Translates to: HWCLRFLPRLHSDLP*EVFLYPWPALLFHT Trigger: TGTATGAAATAGAAGTGCTGGCCACGGATAAAGGAACACCTCCAATGGTAGGTCACTGTGTAGTCTTGGTAGAAATCTTAGACACCAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115657.10 ENSMUST00000192447.6 |
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| CDS CCA 72 bp | CACAGTGACCTACCATTGGAGGTGTTCCTTTATCCGTaGCCAGCACTTCTATTTCATACAATTTGTTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: HSDLPLEVFLYP*PALLFHTICSL Trigger: AAGAGAACAAATTGTATGAAATAGAAGTGCTGGCCACGGATAAAGGAACACCTCCAATGGTAGGTCACTGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115657.10 ENSMUST00000192447.6 |
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| CDS CCA 72 bp | ACAGCGAAGTTAATGTCACTTCAGGGGAGTTGTCATTaGTGTCTAAGATTTCTACCAAGACTACACAGTGAC | + |
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Preference number: 6 (lower is better) Translates to: TAKLMSLQGSCH*CLRFLPRLHSD Trigger: GTCACTGTGTAGTCTTGGTAGAAATCTTAGACACCAATGACAACTCCCCTGAAGTGACATTAACTTCGCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115657.10 ENSMUST00000192447.6 |
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