Pregenerated sensors for PCDHA10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000007440

Ensembl transcript IDs: ENSMUST00000115658.6

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CGCCAGTCAGGGTTGGGCTGCCGGGGATTCTCAAAGATCTCTTGCTaGACTCCACTATCTCCAGAACCCAAACCAGGAGGAACACTGGGA	+
Preference number: 5 (lower is better) Translates to: RQSGLGCRGFSKISC*TPLSPEPKPGGTLG Trigger: TCCCAGTGTTCCTCCTGGTTTGGGTTCTGGAGATAGTGGAGTCCAGCAAGAGATCTTTGAGAATCCCCGGCAGCCCAACCCTGACTGGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115658.6
CDS CCA 90 bp	TGTGCATGCCTGCTCTTAGCGAGGCAGAGTAGCGCCAGTCAGGGTTaGGCTGCCGGGGATTCTCAAAGATCTCTTGCTGGACTCCACTAT	+
Preference number: 5 (lower is better) Translates to: CACLLLARQSSASQG*AAGDSQRSLAGLHY Trigger: ATAGTGGAGTCCAGCAAGAGATCTTTGAGAATCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAGGCATGCACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115658.6
CDS TCA 90 bp	ACGGAAGGGACTGCGCACACTGCCAGCTCTGAACTGGAGCTCATATaGCAACCAAGCATTGTAACCAGAGTCCGCATCTACTGCCCGCAC	+
Preference number: 5 (lower is better) Translates to: TEGTAHTASSELELI*QPSIVTRVRIYCPH Trigger: GTGCGGGCAGTAGATGCGGACTCTGGTTACAATGCTTGGTTGTCATATGAGCTCCAGTTCAGAGCTGGCAGTGTGCGCAGTCCCTTCCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115658.6
CDS TCA 90 bp	CCGTGTATAGTCCCACACGGAAGGGACTGCGCACACTGCCAGCTCTaGACTGGAGCTCATATGACAACCAAGCATTGTAACCAGAGTCCG	+
Preference number: 5 (lower is better) Translates to: PCIVPHGRDCAHCQL*TGAHMTTKHCNQSP Trigger: CGGACTCTGGTTACAATGCTTGGTTGTCATATGAGCTCCAGTTCAGAGCTGGCAGTGTGCGCAGTCCCTTCCGTGTGGGACTATACACGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115658.6
CDS GCA 90 bp	GTCCAAATCCGAGGCATTAAGTCTAATGACCACGGTACCATTTCTTaGATTTTCTACCAGCTTCACCCGATAGATTGCTCTGTCGAATGC	+
Preference number: 5 (lower is better) Translates to: VQIRGIKSNDHGTIS*IFYQLHPIDCSVEC Trigger: GCATTCGACAGAGCAATCTATCGGGTGAAGCTGGTAGAAAATGCAAGAAATGGTACCGTGGTCATTAGACTTAATGCCTCGGATTTGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115658.6
CDS TCA 90 bp	CTTAGGGGAAACATCCGCTGCAAAGGAATAAAGAATTTGACCATTTaGACCTTCGTCCAAATCCGAGGCATTAAGTCTAATGACCACGGT	+
Preference number: 5 (lower is better) Translates to: LRGNIRCKGIKNLTI*TFVQIRGIKSNDHG Trigger: ACCGTGGTCATTAGACTTAATGCCTCGGATTTGGACGAAGGTTCAAATGGTCAAATTCTTTATTCCTTTGCAGCGGATGTTTCCCCTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115658.6
CDS CCA 90 bp	AAGGTTTCTTTAACACTAGTTGGAGTGGTTTTACCAACTCATCTGTaGTTGGTACTTCCAGGGAGAAATATTCACTGGGACTCAGTCTGT	+
Preference number: 5 (lower is better) Translates to: KVSLTLVGVVLPTHL*LVLPGRNIHWDSVC Trigger: ACAGACTGAGTCCCAGTGAATATTTCTCCCTGGAAGTACCAACCACAGATGAGTTGGTAAAACCACTCCAACTAGTGTTAAAGAAACCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115658.6
CDS TCA 90 bp	TCTATTTTTCCATTGACTTTAATTTCTCCACTGACTGAATCTATATaGAAAGTGGCTTCGGTCTTAGGGGAAACATCCGCTGCAAAGGAA	+
Preference number: 5 (lower is better) Translates to: SIFPLTLISPLTESI*KVASVLGETSAAKE Trigger: TTCCTTTGCAGCGGATGTTTCCCCTAAGACCGAAGCCACTTTTCATATAGATTCAGTCAGTGGAGAAATTAAAGTCAATGGAAAAATAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115658.6
CDS TCA 90 bp	CAGGGAGCGATAATGATGTTACTATTATCTTGGGAGCATTATCATTaGTGTCCAGGACTTCAATTAAGATTGTGCAGTGACCAAACATTG	+
Preference number: 5 (lower is better) Translates to: QGAIMMLLLSWEHYH*CPGLQLRLCSDQTL Trigger: CAATGTTTGGTCACTGCACAATCTTAATTGAAGTCCTGGACATCAATGATAATGCTCCCAAGATAATAGTAACATCATTATCGCTCCCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115658.6
CDS CCA 72 bp	CTGCTCTTAGCGAGGCAGAGTAGCGCCAGTCAGGGTTaGGCTGCCGGGGATTCTCAAAGATCTCTTGCTGGA	+
Preference number: 6 (lower is better) Translates to: LLLARQSSASQG*AAGDSQRSLAG Trigger: TCCAGCAAGAGATCTTTGAGAATCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115658.6
CDS CAA 90 bp	GTAGCGCCAGTCAGGGTTGGGCTGCCGGGGATTCTCAAAGATCTCTaGCTGGACTCCACTATCTCCAGAACCCAAACCAGGAGGAACACT	+
Preference number: 6 (lower is better) Translates to: VAPVRVGLPGILKDL*LDSTISRTQTRRNT Trigger: AGTGTTCCTCCTGGTTTGGGTTCTGGAGATAGTGGAGTCCAGCAAGAGATCTTTGAGAATCCCCGGCAGCCCAACCCTGACTGGCGCTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115658.6
CDS TCA 72 bp	GTCCCACACGGAAGGGACTGCGCACACTGCCAGCTCTaGACTGGAGCTCATATGACAACCAAGCATTGTAAC	+
Preference number: 6 (lower is better) Translates to: VPHGRDCAHCQL*TGAHMTTKHCN Trigger: GTTACAATGCTTGGTTGTCATATGAGCTCCAGTTCAGAGCTGGCAGTGTGCGCAGTCCCTTCCGTGTGGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115658.6
CDS GCA 72 bp	CGAGGCATTAAGTCTAATGACCACGGTACCATTTCTTaGATTTTCTACCAGCTTCACCCGATAGATTGCTCT	+
Preference number: 6 (lower is better) Translates to: RGIKSNDHGTIS*IFYQLHPIDCS Trigger: AGAGCAATCTATCGGGTGAAGCTGGTAGAAAATGCAAGAAATGGTACCGTGGTCATTAGACTTAATGCCTCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115658.6
CDS CCA 72 bp	TTAACACTAGTTGGAGTGGTTTTACCAACTCATCTGTaGTTGGTACTTCCAGGGAGAAATATTCACTGGGAC	+
Preference number: 6 (lower is better) Translates to: LTLVGVVLPTHL*LVLPGRNIHWD Trigger: GTCCCAGTGAATATTTCTCCCTGGAAGTACCAACCACAGATGAGTTGGTAAAACCACTCCAACTAGTGTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115658.6
CDS TCA 72 bp	CCATTGACTTTAATTTCTCCACTGACTGAATCTATATaGAAAGTGGCTTCGGTCTTAGGGGAAACATCCGCT	+
Preference number: 6 (lower is better) Translates to: PLTLISPLTESI*KVASVLGETSA Trigger: AGCGGATGTTTCCCCTAAGACCGAAGCCACTTTTCATATAGATTCAGTCAGTGGAGAAATTAAAGTCAATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115658.6