Pregenerated sensors for PCDHA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000103442

Ensembl transcript IDs: ENSMUST00000070797.7, ENSMUST00000193839.6

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TTGGGCTGCCGGGGATTACCAGAAAGATCTGAATTTACTTCTGCGTaGTCACTTCTTTCCGCTATGTTCAAACCTGGGGCTAAACCCGGG	+
Preference number: 5 (lower is better) Translates to: LGCRGLPERSEFTSA*SLLSAMFKPGAKPG Trigger: CCCGGGTTTAGCCCCAGGTTTGAACATAGCGGAAAGAAGTGACCACGCAGAAGTAAATTCAGATCTTTCTGGTAATCCCCGGCAGCCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000070797.7 ENSMUST00000193839.6
CDS CCA 72 bp	CTGCTCTTAGCGAGGCAGAGTAGCGCCAGTCAGGGTTaGGCTGCCGGGGATTACCAGAAAGATCTGAATTTA	+
Preference number: 6 (lower is better) Translates to: LLLARQSSASQG*AAGDYQKDLNL Trigger: TAAATTCAGATCTTTCTGGTAATCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000070797.7 ENSMUST00000193839.6
CDS TCA 72 bp	CCCACTGCACCGGTTAATACAGGCAAAGAGGCTTTCTaGATCGGACTGCTTTCCACCAGAGATACCAACACG	+
Preference number: 6 (lower is better) Translates to: PTAPVNTGKEAF*IGLLSTRDTNT Trigger: CGTGTTGGTATCTCTGGTGGAAAGCAGTCCGATTCAGAAAGCCTCTTTGCCTGTATTAACCGGTGCAGTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070797.7 ENSMUST00000193839.6
CDS TCA 72 bp	GTCAGGGTTGGGCTGCCGGGGATTACCAGAAAGATCTaGATTTACTTCTGCGTGGTCACTTCTTTCCGCTAT	+
Preference number: 6 (lower is better) Translates to: VRVGLPGITRKI*IYFCVVTSFRY Trigger: ATAGCGGAAAGAAGTGACCACGCAGAAGTAAATTCAGATCTTTCTGGTAATCCCCGGCAGCCCAACCCTGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000070797.7 ENSMUST00000193839.6
CDS CCA 72 bp	CGGGGATTACCAGAAAGATCTGAATTTACTTCTGCGTaGTCACTTCTTTCCGCTATGTTCAAACCTGGGGCT	+
Preference number: 6 (lower is better) Translates to: RGLPERSEFTSA*SLLSAMFKPGA Trigger: AGCCCCAGGTTTGAACATAGCGGAAAGAAGTGACCACGCAGAAGTAAATTCAGATCTTTCTGGTAATCCCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000070797.7 ENSMUST00000193839.6
CDS CAA 90 bp	GACACCTTGATGAGTGCGATGATAGTGTTAAGTGGAGTATCCTCTTaGATGGGCAAAGACAAGGATGTGATCGACAGCTCTGGAGCATTA	+
Preference number: 6 (lower is better) Translates to: DTLMSAMIVLSGVSS*MGKDKDVIDSSGAL Trigger: TAATGCTCCAGAGCTGTCGATCACATCCTTGTCTTTGCCCATCAAAGAGGATACTCCACTTAACACTATCATCGCACTCATCAAGGTGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070797.7 ENSMUST00000193839.6
CDS CCA 72 bp	CGTCTGTTGTCTCTACCTTTAAAGAAAAGTAATCAGTaGGGCTCAGCGTGTAAGTTAAAAGAGAATTGGCAC	+
Preference number: 6 (lower is better) Translates to: RLLSLPLKKSNQ*GSACKLKENWH Trigger: GTGCCAATTCTCTTTTAACTTACACGCTGAGCCCCACTGATTACTTTTCTTTAAAGGTAGAGACAACAGACG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000070797.7 ENSMUST00000193839.6

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