RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCDH12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024440

Ensembl transcript IDs: ENSMUST00000025311.8, ENSMUST00000194012.2

Found 329 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCCTCATCTGTAAGATGGAATAACATCACTGCATTCCAAAGTGTGTaGCTGTCACCAGCCCGAGGTGGCACCAGCCCGGCTGGCCTGTCT +
Preference number: 1 (lower is better)
Translates to: SSSVRWNNITAFQSV*LSPARGGTSPAGLS
Trigger: AGACAGGCCAGCCGGGCTGGTGCCACCTCGGGCTGGTGACAGTCACACACTTTGGAATGCAGTGATGTTATTCCATCTTACAGATGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR GCA 90 bp TCCCTGTTGTCCGTAAAGCTCAGCCACGCAGACCATTACAAGGTCTaGCCTAGTCAGTTGCTTGGTAGTCCTGGACTCCTGCTTCCTCTG +
Preference number: 1 (lower is better)
Translates to: SLLSVKLSHADHYKV*PSQLLGSPGLLLPL
Trigger: CAGAGGAAGCAGGAGTCCAGGACTACCAAGCAACTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTTTACGGACAACAGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR CCA 90 bp GTGAGCTGCAGTTTTCCCTTTATTAGTAGGTCAGAAGGCATTGCCTaGCTCTTCCAAGAGCCCACCCTCGGCCTTCAGTGTCCAGTGAGG +
Preference number: 1 (lower is better)
Translates to: VSCSFPFISRSEGIA*LFQEPTLGLQCPVR
Trigger: CCTCACTGGACACTGAAGGCCGAGGGTGGGCTCTTGGAAGAGCCAGGCAATGCCTTCTGACCTACTAATAAAGGGAAAACTGCAGCTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR TCA 90 bp TCCAGTGCCATGGTTGATGACATGGGCTTTGGCTTTGGGCCAGCCTaGGCACAAATCCTGAGTCTGCCTCTACTCCTTGCTCAATCTTGG +
Preference number: 1 (lower is better)
Translates to: SSAMVDDMGFGFGPA*AQILSLPLLLAQSW
Trigger: CCAAGATTGAGCAAGGAGTAGAGGCAGACTCAGGATTTGTGCTCAGGCTGGCCCAAAGCCAAAGCCCATGTCATCAACCATGGCACTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR CCA 90 bp CTACTGTATGCACAAGAAGGGCTGCTCCCTGGAAAAGGAAGGGACTaGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGA +
Preference number: 1 (lower is better)
Translates to: LLYAQEGLLPGKGRD*DWADASSFYPVLVR
Trigger: TCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCTTCCTTTTCCAGGGAGCAGCCCTTCTTGTGCATACAGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR TCA 90 bp GAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGACTAATTCGGAACTaGGTGTCTTCTGTCTGCAAGTCTTCATCTCAGGGACTTTTCCTC +
Preference number: 1 (lower is better)
Translates to: ELLLPCACKSGLIRN*VSSVCKSSSQGLFL
Trigger: GAGGAAAAGTCCCTGAGATGAAGACTTGCAGACAGAAGACACTCAGTTCCGAATTAGTCCGCTCTTACAAGCACAGGGTAAAAGGAGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR TCA 90 bp CAGCATAGCATAAGTTGCCCTAAAGTTAGGGATATCTCTGTCCAATaGATTCCACAAATTTTAAAAACCAGCTTATTCCCTGAGATCCTC +
Preference number: 1 (lower is better)
Translates to: QHSISCPKVRDISVQ*IPQILKTSLFPEIL
Trigger: GAGGATCTCAGGGAATAAGCTGGTTTTTAAAATTTGTGGAATTCATTGGACAGAGATATCCCTAACTTTAGGGCAACTTATGCTATGCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR TCA 90 bp AGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGGTATCTGTTCCTCCTaGGGGCCACCTCTTTATGTG +
Preference number: 2 (lower is better)
Translates to: RDWDWADASSFYPVLVRAGICSS*GPPLYV
Trigger: CACATAAAGAGGTGGCCCTCAGGAGGAACAGATACC...CGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR TCA 90 bp TTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCCTGCCGATAGAGGGTATCTGTTCCTCCTaGGGGCCACCTCTTTATGTG +
Preference number: 2 (lower is better)
Translates to: FTHHPLGPQFTDPSLPIEGICSS*GPPLYV
Trigger: CACATAAAGAGGTGGCCCTCAGGAGGAACAGATACC...CTCTATCGGCAGGCTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR GCA 90 bp TTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCCTGCCGATAGAGGTAGTCCTGGACTCCTaGTTCCTCTGTGAGGAACAG +
Preference number: 2 (lower is better)
Translates to: FTHHPLGPQFTDPSLPIEVVLDS*FLCEEQ
Trigger: CTGTTCCTCACAGAGGAAGCAGGAGTCCAGGACTAC...CTCTATCGGCAGGCTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR TCA 90 bp GGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGATCACTCCAAACAGAGTaGGCTGCAGTTTTCCCTTTA +
Preference number: 2 (lower is better)
Translates to: GLGLGRCELLLPCACKSGSLQTE*AAVFPL
Trigger: TAAAGGGAAAACTGCAGCTCACTCTGTTTGGAGTGA...TCCGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR CCA 90 bp AGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGGATACTACACTTTGTaGTATCTGTTCCTCCTGAGG +
Preference number: 2 (lower is better)
Translates to: RDWDWADASSFYPVLVRAGYYTL*YLFLLR
Trigger: CCTCAGGAGGAACAGATACCACAAAGTGTAGTATCC...CGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR CCA 90 bp TTTCTAGTTCTAGTTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGGGAAAAGGAAGGGACTaGGACTGGGCAGATGCGAGC +
Preference number: 2 (lower is better)
Translates to: FLVLVHTPSSGASIHRPKGKGRD*DWADAS
Trigger: GCTCGCATCTGCCCAGTCCCAGTCCCTTCCTTTTCC...CTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAACTAGAACTAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR TCA 90 bp TTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCCTGCCGATAGAGTCACTCCAAACAGAGTaGGCTGCAGTTTTCCCTTTA +
Preference number: 2 (lower is better)
Translates to: FTHHPLGPQFTDPSLPIESLQTE*AAVFPL
Trigger: TAAAGGGAAAACTGCAGCTCACTCTGTTTGGAGTGA...CTCTATCGGCAGGCTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR TCA 90 bp GGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGACCTGTAAAATGGGTATaGAAATACTACCGACCTAGC +
Preference number: 2 (lower is better)
Translates to: GLGLGRCELLLPCACKSGPVKWV*KYYRPS
Trigger: GCTAGGTCGGTAGTATTTTCATACCCATTTTACAGG...TCCGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR TCA 90 bp TTTCTAGTTCTAGTTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCCTGAGCACAAATCCTaGGTCTGCCTCTACTCCTTG +
Preference number: 2 (lower is better)
Translates to: FLVLVHTPSSGASIHRPKPEHKS*VCLYSL
Trigger: CAAGGAGTAGAGGCAGACTCAGGATTTGTGCTCAGG...CTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAACTAGAACTAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR TCA 90 bp GGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGACCTGATTTTTCTAGCTaGGATGCATATTGTTGGATA +
Preference number: 2 (lower is better)
Translates to: GLGLGRCELLLPCACKSGPDFSS*DAYCWI
Trigger: TATCCAACAATATGCATCTCAGCTAGAAAAATCAGG...TCCGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR GCA 90 bp GGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGACCAACAAGAGTTTCATaGCAGGAATTTGATGACAAA +
Preference number: 2 (lower is better)
Translates to: GLGLGRCELLLPCACKSGPTRVS*QEFDDK
Trigger: TTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGG...TCCGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR TCA 90 bp AAGTCTTCATCTCAGGGACTTTTCCTCTTCCGTTCCTTTGTTTGCAATCCAGTGCACTTCAAACCAGTGTaGCCCATGCCTGTCATGACC +
Preference number: 2 (lower is better)
Translates to: KSSSQGLFLFRSFVCNPVHFKPV*PMPVMT
Trigger: GGTCATGACAGGCATGGGTCACACTGGTTTGAAGTG...CACTGGATTGCAAACAAAGGAACGGAAGAGGAAAAGTCCCTGAGATGAAGACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR GCA 90 bp AGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGCTTTATGTGTTTTACTaGAAACTCCTAGGAGTGAAA +
Preference number: 2 (lower is better)
Translates to: RDWDWADASSFYPVLVRALYVFY*KLLGVK
Trigger: TTTCACTCCTAGGAGTTTGCAGTAAAACACATAAAG...CGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR CCA 90 bp TTCGGAACTGAGTGTCTTCTGTCTGCAAGTCTTCATCTCAGGGACTTTTCCTCTTGCAATCCAGTGCCATaGTTGATGACATGGGCTTTG +
Preference number: 2 (lower is better)
Translates to: FGTECLLSASLHLRDFSSCNPVP*LMTWAL
Trigger: CAAAGCCCATGTCATCAACCATGGCACTGGATTGCA...AGAGGAAAAGTCCCTGAGATGAAGACTTGCAGACAGAAGACACTCAGTTCCGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR TCA 90 bp TTCGGAACTGAGTGTCTTCTGTCTGCAAGTCTTCATCTCAGGGACTTTTCCTCTCCTGTAAAATGGGTATaGAAATACTACCGACCTAGC +
Preference number: 2 (lower is better)
Translates to: FGTECLLSASLHLRDFSSPVKWV*KYYRPS
Trigger: GCTAGGTCGGTAGTATTTTCATACCCATTTTACAGG...AGAGGAAAAGTCCCTGAGATGAAGACTTGCAGACAGAAGACACTCAGTTCCGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR CCA 72 bp GCACAAGAAGGGCTGCTCCCTGGAAAAGGAAGGGACTaGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTG +
Preference number: 3 (lower is better)
Translates to: AQEGLLPGKGRD*DWADASSFYPV
Trigger: CACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCTTCCTTTTCCAGGGAGCAGCCCTTCTTGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR CAA 90 bp GGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGATTGATGACATGGGCTTaGGCTTTGGGCCAGCCTGAG +
Preference number: 3 (lower is better)
Translates to: GLGLGRCELLLPCACKSGLMTWA*ALGQPE
Trigger: CTCAGGCTGGCCCAAAGCCAAAGCCCATGTCATCAA...TCCGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR CCA 72 bp GGTAAGACTACTGTATGCACAAGAAGGGCTGCTCCCTaGAAAAGGAAGGGACTGGGACTGGGCAGATGCGAG +
Preference number: 3 (lower is better)
Translates to: GKTTVCTRRAAP*KRKGLGLGRCE
Trigger: CTCGCATCTGCCCAGTCCCAGTCCCTTCCTTTTCCAGGGAGCAGCCCTTCTTGTGCATACAGTAGTCTTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR TCA 72 bp GTAAGATGGAATAACATCACTGCATTCCAAAGTGTGTaGCTGTCACCAGCCCGAGGTGGCACCAGCCCGGCT +
Preference number: 3 (lower is better)
Translates to: VRWNNITAFQSV*LSPARGGTSPA
Trigger: AGCCGGGCTGGTGCCACCTCGGGCTGGTGACAGTCACACACTTTGGAATGCAGTGATGTTATTCCATCTTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR TCA 72 bp CTACGTAAGATGGAGCTCCTGCTTGCTTGGTTCTCATaGCCTCTCTCAGTGGCCTGGAACCCAACAGCTCTG +
Preference number: 3 (lower is better)
Translates to: LRKMELLLAWFS*PLSVAWNPTAL
Trigger: CAGAGCTGTTGGGTTCCAGGCCACTGAGAGAGGTCATGAGAACCAAGCAAGCAGGAGCTCCATCTTACGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR GCA 72 bp AAACCAGCTTATTCCCTGAGATCCTCAAGACCCGAGTaGCCTAACATTTCCCAGGGGACCCAGGTCCTGGAT +
Preference number: 3 (lower is better)
Translates to: KPAYSLRSSRPE*PNISQGTQVLD
Trigger: ATCCAGGACCTGGGTCCCCTGGGAAATGTTAGGGCACTCGGGTCTTGAGGATCTCAGGGAATAAGCTGGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR GCA 72 bp TCCGTAAAGCTCAGCCACGCAGACCATTACAAGGTCTaGCCTAGTCAGTTGCTTGGTAGTCCTGGACTCCTG +
Preference number: 3 (lower is better)
Translates to: SVKLSHADHYKV*PSQLLGSPGLL
Trigger: CAGGAGTCCAGGACTACCAAGCAACTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTTTACGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR CAA 90 bp GGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGAACTCCTTGCTCAATCTaGGGGAAGAACCCTCAATGT +
Preference number: 3 (lower is better)
Translates to: GLGLGRCELLLPCACKSGTPCSI*GKNPQC
Trigger: ACATTGAGGGTTCTTCCCCAAGATTGAGCAAGGAGT...TCCGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR TCA 72 bp ATGGTTGATGACATGGGCTTTGGCTTTGGGCCAGCCTaGGCACAAATCCTGAGTCTGCCTCTACTCCTTGCT +
Preference number: 3 (lower is better)
Translates to: MVDDMGFGFGPA*AQILSLPLLLA
Trigger: AGCAAGGAGTAGAGGCAGACTCAGGATTTGTGCTCAGGCTGGCCCAAAGCCAAAGCCCATGTCATCAACCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR CCA 72 bp CAACAAGTGTTTCAAGTGTCACCTGTGCCAGGCACCTaGCTACGTAAGATGGAGCTCCTGCTTGCTTGGTTC +
Preference number: 3 (lower is better)
Translates to: QQVFQVSPVPGT*LRKMELLLAWF
Trigger: GAACCAAGCAAGCAGGAGCTCCATCTTACGTAGCCAGGTGCCTGGCACAGGTGACACTTGAAACACTTGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR CAA 90 bp CTGTTCCTCCTGAGGGCCACCTCTTTATGTGTTTTACTGCAAACTCCTAGGAGTGCCCTAGTCAGTTGCTaGGTAGTCCTGGACTCCTGC +
Preference number: 3 (lower is better)
Translates to: LFLLRATSLCVLLQTPRSALVSC*VVLDSC
Trigger: GCAGGAGTCCAGGACTACCAAGCAACTGACTAGGGC...ACTCCTAGGAGTTTGCAGTAAAACACATAAAGAGGTGGCCCTCAGGAGGAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR CAA 90 bp TTTCTAGTTCTAGTTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGTTGATGACATGGGCTTaGGCTTTGGGCCAGCCTGAG +
Preference number: 3 (lower is better)
Translates to: FLVLVHTPSSGASIHRPKLMTWA*ALGQPE
Trigger: CTCAGGCTGGCCCAAAGCCAAAGCCCATGTCATCAA...CTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAACTAGAACTAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR TCA 72 bp CGCAGGTCTTACAAGATCACCCTGACCGGAGTGAGGTaGTCAGAGACTCAGACCTTGCCTCTGAAAATGCTT +
Preference number: 3 (lower is better)
Translates to: RRSYKITLTGVR*SETQTLPLKML
Trigger: AAGCATTTTCAGAGGCAAGGTCTGAGTCTCTGATCACCTCACTCCGGTCAGGGTGATCTTGTAAGACCTGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR GCA 72 bp TCTGCCCTAGTCAGTTGCTTGGTAGTCCTGGACTCCTaGTTCCTCTGTGAGGAACAGCATAGCATAAGTTGC +
Preference number: 3 (lower is better)
Translates to: SALVSCLVVLDS*FLCEEQHSISC
Trigger: GCAACTTATGCTATGCTGTTCCTCACAGAGGAAGCAGGAGTCCAGGACTACCAAGCAACTGACTAGGGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR CAA 90 bp TTCGGAACTGAGTGTCTTCTGTCTGCAAGTCTTCATCTCAGGGACTTTTCCTCTGTAGGTCAGAAGGCATaGCCTGGCTCTTCCAAGAGC +
Preference number: 3 (lower is better)
Translates to: FGTECLLSASLHLRDFSSVGQKA*PGSSKS
Trigger: GCTCTTGGAAGAGCCAGGCAATGCCTTCTGACCTAC...AGAGGAAAAGTCCCTGAGATGAAGACTTGCAGACAGAAGACACTCAGTTCCGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR TCA 72 bp GTCCATCGTCTGCGTACCTGTCACTTCAAACCAGTGTaGCCCATGCCTGTCATGACCCAACAAGAGTTTCAT +
Preference number: 3 (lower is better)
Translates to: VHRLRTCHFKPV*PMPVMTQQEFH
Trigger: ATGAAACTCTTGTTGGGTCATGACAGGCATGGGTCACACTGGTTTGAAGTGACAGGTACGCAGACGATGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR GCA 72 bp ATGTATCAACTCAACAAGTGTTTCAAGTGTCACCTGTaGCAGGCACCTGGCTACGTAAGATGGAGCTCCTGC +
Preference number: 3 (lower is better)
Translates to: MYQLNKCFKCHL*QAPGYVRWSSC
Trigger: GCAGGAGCTCCATCTTACGTAGCCAGGTGCCTGGCACAGGTGACACTTGAAACACTTGTTGAGTTGATACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR CCA 72 bp GTGAGGCCATCCCTCTGCTTAGGATACTACACTTTGTaGTATCTGTTCCTCCTGAGGGCCACCTCTTTATGT +
Preference number: 3 (lower is better)
Translates to: VRPSLCLGYYTL*YLFLLRATSLC
Trigger: ACATAAAGAGGTGGCCCTCAGGAGGAACAGATACCACAAAGTGTAGTATCCTAAGCAGAGGGATGGCCTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR CAA 90 bp GTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGCTCTCACGTAGGTCAGAAGGCATaGCCTGGCTCTTCCAAGAGC +
Preference number: 3 (lower is better)
Translates to: VMTQQEFHARNLMTNSSHVGQKA*PGSSKS
Trigger: GCTCTTGGAAGAGCCAGGCAATGCCTTCTGACCTAC...GTGAGAGCTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR CAA 90 bp TTTCTAGTTCTAGTTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGGTCTGCCTCTACTCCTaGCTCAATCTTGGGGAAGAA +
Preference number: 3 (lower is better)
Translates to: FLVLVHTPSSGASIHRPKVCLYS*LNLGEE
Trigger: TTCTTCCCCAAGATTGAGCAAGGAGTAGAGGCAGAC...CTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAACTAGAACTAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR CCA 72 bp CAAATCCTGAGTCTGCCTCTACTCCTTGCTCAATCTTaGGGAAGAACCCTCAATGTTCCCAAGCTTCATTCC +
Preference number: 3 (lower is better)
Translates to: QILSLPLLLAQS*GRTLNVPKLHS
Trigger: GGAATGAAGCTTGGGAACATTGAGGGTTCTTCCCCAAGATTGAGCAAGGAGTAGAGGCAGACTCAGGATTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR TCA 72 bp TCAATGTTCCCAAGCTTCATTCCTGTAAAATGGGTATaGAAATACTACCGACCTAGCACTGGGCAGGGCTGG +
Preference number: 3 (lower is better)
Translates to: SMFPSFIPVKWV*KYYRPSTGQGW
Trigger: CCAGCCCTGCCCAGTGCTAGGTCGGTAGTATTTTCATACCCATTTTACAGGAATGAAGCTTGGGAACATTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR TCA 72 bp TTACCCTGTGCTTGTAAGAGCGGACTAATTCGGAACTaGGTGTCTTCTGTCTGCAAGTCTTCATCTCAGGGA +
Preference number: 3 (lower is better)
Translates to: LPCACKSGLIRN*VSSVCKSSSQG
Trigger: TCCCTGAGATGAAGACTTGCAGACAGAAGACACTCAGTTCCGAATTAGTCCGCTCTTACAAGCACAGGGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR GCA 72 bp GTGACCCATGCCTGTCATGACCCAACAAGAGTTTCATaGCAGGAATTTGATGACAAACAGCTCTCACTCCAA +
Preference number: 3 (lower is better)
Translates to: VTHACHDPTRVS*QEFDDKQLSLQ
Trigger: TTGGAGTGAGAGCTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGACAGGCATGGGTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR GCA 72 bp TCATCTCAGGGACTTTTCCTCTTCCGTTCCTTTGTTTaGAATCCAGTGCCATGGTTGATGACATGGGCTTTG +
Preference number: 3 (lower is better)
Translates to: SSQGLFLFRSFV*NPVPWLMTWAL
Trigger: CAAAGCCCATGTCATCAACCATGGCACTGGATTGCAAACAAAGGAACGGAAGAGGAAAAGTCCCTGAGATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR CAA 90 bp TTTCTAGTTCTAGTTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGTTTCATGCCAGGAATTaGATGACAAACAGCTCTCAC +
Preference number: 3 (lower is better)
Translates to: FLVLVHTPSSGASIHRPKFHARN*MTNSSH
Trigger: GTGAGAGCTGTTTGTCATCAAATTCCTGGCATGAAA...CTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAACTAGAACTAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR-3UTR CAA 90 bp AAGTCTTCATCTCAGGGACTTTTCCTCTTCCGTTCCTTTGTTTGCAATCCAGTGTTTCATGCCAGGAATTaGATGACAAACAGCTCTCAC +
Preference number: 3 (lower is better)
Translates to: KSSSQGLFLFRSFVCNPVFHARN*MTNSSH
Trigger: GTGAGAGCTGTTTGTCATCAAATTCCTGGCATGAAA...CACTGGATTGCAAACAAAGGAACGGAAGAGGAAAAGTCCCTGAGATGAAGACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
3UTR TCA 72 bp ATGAATTCCACAAATTTTAAAAACCAGCTTATTCCCTaGGATCCTCAAGACCCGAGTGCCCTAACATTTCCC +
Preference number: 3 (lower is better)
Translates to: MNSTNFKNQLIP*DPQDPSALTFP
Trigger: GGGAAATGTTAGGGCACTCGGGTCTTGAGGATCTCAGGGAATAAGCTGGTTTTTAAAATTTGTGGAATTCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS-3UTR CCA 90 bp GGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGACCGAGACGAAAGTGCTaGCCAGGCGCGTGCCTGTTG +
Preference number: 4 (lower is better)
Translates to: GLGLGRCELLLPCACKSGPRRKC*PGACLL
Trigger: CAACAGGCACGCGCCTGGCCAGCACTTTCGTCTCGG...TCCGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS-3UTR TCA 90 bp GGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGAGGTGGTGAGGGGCAATaGCAATCTCGCCATCCAGGC +
Preference number: 4 (lower is better)
Translates to: GLGLGRCELLLPCACKSGGGEGQ*QSRHPG
Trigger: GCCTGGATGGCGAGATTGTCATTGCCCCTCACCACC...TCCGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp AGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGAAGGAGGGGCTGCCCTaGTCCTCTACCACTATCCCC +
Preference number: 4 (lower is better)
Translates to: RDWDWADASSFYPVLVRAKEGLP*SSTTIP
Trigger: GGGGATAGTGGTAGAGGACCAGGGCAGCCCCTCCTT...CGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp AGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGATGCGAGCTGGGGTTaGCCTCTGTCCTCTGCTATC +
Preference number: 4 (lower is better)
Translates to: RDWDWADASSFYPVLVRADASWG*PLSSAI
Trigger: GATAGCAGAGGACAGAGGGCAACCCCAGCTCGCATC...CGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp AGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGATGCTGGATGCGAGCTaGGGTTGCCCTCTGTCCTCT +
Preference number: 4 (lower is better)
Translates to: RDWDWADASSFYPVLVRAMLDAS*GCPLSS
Trigger: AGAGGACAGAGGGCAACCCCAGCTCGCATCCAGCAT...CGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp TTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCCTGCCGATAGAGTGGGGCCTCTTGGGCTaGTGGCGGTATGACGACTCA +
Preference number: 4 (lower is better)
Translates to: FTHHPLGPQFTDPSLPIEWGLLG*WRYDDS
Trigger: TGAGTCGTCATACCGCCACCAGCCCAAGAGGCCCCA...CTCTATCGGCAGGCTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp GGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGATCCTGCAGTACCTCCTaGCTCTCTGCCAGTTCTCCC +
Preference number: 4 (lower is better)
Translates to: GLGLGRCELLLPCACKSGSCSTS*LSASSP
Trigger: GGGAGAACTGGCAGAGAGCCAGGAGGTACTGCAGGA...TCCGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp TTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCCTGCCGATAGAGGCCTCCTCCTTGTCTTaGTCTCCAGTCGCCCTCGCT +
Preference number: 4 (lower is better)
Translates to: FTHHPLGPQFTDPSLPIEASSLS*SPVALA
Trigger: AGCGAGGGCGACTGGAGACCAAGACAAGGAGGAGGC...CTCTATCGGCAGGCTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp TTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCCTGCCGATAGAGGGCTGGAATTGGCCCTaGTGCAGCAAGGACAGCAGC +
Preference number: 4 (lower is better)
Translates to: FTHHPLGPQFTDPSLPIEGWNWP*CSKDSS
Trigger: GCTGCTGTCCTTGCTGCACCAGGGCCAATTCCAGCC...CTCTATCGGCAGGCTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp AGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGAAGTGGCCCAGCTCTTaGTTCAGCCAACAGTGGACG +
Preference number: 4 (lower is better)
Translates to: RDWDWADASSFYPVLVRAKWPSS*FSQQWT
Trigger: CGTCCACTGTTGGCTGAATCAAGAGCTGGGCCACTT...CGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp AGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGCCAGTGTGGCATTGGTaGGCAGCATGTACGTGTTGC +
Preference number: 4 (lower is better)
Translates to: RDWDWADASSFYPVLVRAPVWHW*AACTCC
Trigger: GCAACACGTACATGCTGCTCACCAATGCCACACTGG...CGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp AGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGCAAGAGTCCCAGCCTaGCTCCATCAGTGTCTCCTT +
Preference number: 4 (lower is better)
Translates to: RDWDWADASSFYPVLVRAARVPA*LHQCLL
Trigger: AAGGAGACACTGATGGAGGCAGGCTGGGACTCTTGC...CGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp TATTCCCTGAGATCCTCAAGACCCGAGTGCCCTAACATTTCCCAGGGGACCCAGCCAGTTCTCCCTGGTTaGCTTGGTTACGCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: YSLRSSRPECPNISQGTQPVLPG*LGYAGS
Trigger: GGACCCTGCGTAACCAAGGCAACCAGGGAGAACTGG...CTGGGTCCCCTGGGAAATGTTAGGGCACTCGGGTCTTGAGGATCTCAGGGAATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
3UTR CAA 72 bp TGCCAGGCACCTGGCTACGTAAGATGGAGCTCCTGCTaGCTTGGTTCTCATGACCTCTCTCAGTGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: CQAPGYVRWSSC*LGSHDLSQWPG
Trigger: TCCAGGCCACTGAGAGAGGTCATGAGAACCAAGCAAGCAGGAGCTCCATCTTACGTAGCCAGGTGCCTGGCA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS-3UTR TCA 90 bp TCTGCCCTAGTCAGTTGCTTGGTAGTCCTGGACTCCTGCTTCCTCTGTGAGGAAGGGCTTGGCGCAGAATaGTCTGGCCTGTCTTGGCAT +
Preference number: 4 (lower is better)
Translates to: SALVSCLVVLDSCFLCEEGLGAE*SGLSWH
Trigger: ATGCCAAGACAGGCCAGATCATTCTGCGCCAAGCCC...TTCCTCACAGAGGAAGCAGGAGTCCAGGACTACCAAGCAACTGACTAGGGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp GGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGAGGTGGTCCACACTGGTaGCAAACACGACCTTCAATG +
Preference number: 4 (lower is better)
Translates to: GLGLGRCELLLPCACKSGGGPHW*QTRPSM
Trigger: CATTGAAGGTCGTGTTTGTCACCAGTGTGGACCACC...TCCGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp TTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCCTGCCGATAGAGAGGTCAGGTTCTGCTTaGCCACTAGGCTTGAGGCCT +
Preference number: 4 (lower is better)
Translates to: FTHHPLGPQFTDPSLPIERSGSA*PLGLRP
Trigger: AGGCCTCAAGCCTAGTGGTCAAGCAGAACCTGACCT...CTCTATCGGCAGGCTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp TATTCCCTGAGATCCTCAAGACCCGAGTGCCCTAACATTTCCCAGGGGACCCAGGTTTCCCTATCACCGTaGCAGACGGCACTTCCTCTG +
Preference number: 4 (lower is better)
Translates to: YSLRSSRPECPNISQGTQVSLSP*QTALPL
Trigger: CAGAGGAAGTGCCGTCTGGCACGGTGATAGGGAAAC...CTGGGTCCCCTGGGAAATGTTAGGGCACTCGGGTCTTGAGGATCTCAGGGAATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp AAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTTGCTTGGTAGTCTGGAAGGCATCTCCTaGCTTCCCACGCCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: KLSHADHYKVCPSQLLGSLEGIS*LPTPLL
Trigger: GAGGAGAGGCGTGGGAAGGCAGGAGATGCCTTCCAG...ACTACCAAGCAACTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp AGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGAAGGGGATTCGTGTGTaGAGAGAGGCACTCTCTGAG +
Preference number: 4 (lower is better)
Translates to: RDWDWADASSFYPVLVRAKGIRV*REALSE
Trigger: CTCAGAGAGTGCCTCTCTGCACACACGAATCCCCTT...CGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp TCTGCCCTAGTCAGTTGCTTGGTAGTCCTGGACTCCTGCTTCCTCTGTGAGGAATCTGCAAGGAGGGGCTaGCCTGGTCCTCTACCACTA +
Preference number: 4 (lower is better)
Translates to: SALVSCLVVLDSCFLCEESARRG*PGPLPL
Trigger: TAGTGGTAGAGGACCAGGGCAGCCCCTCCTTGCAGA...TTCCTCACAGAGGAAGCAGGAGTCCAGGACTACCAAGCAACTGACTAGGGCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp TATTCCCTGAGATCCTCAAGACCCGAGTGCCCTAACATTTCCCAGGGGACCCAGCACTGGGATTCTCAATaGGCAACAGAAGGTGGCCCG +
Preference number: 4 (lower is better)
Translates to: YSLRSSRPECPNISQGTQHWDSQ*ATEGGP
Trigger: CGGGCCACCTTCTGTTGCCCATTGAGAATCCCAGTG...CTGGGTCCCCTGGGAAATGTTAGGGCACTCGGGTCTTGAGGATCTCAGGGAATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp AAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTTGCTTGGTAGTGTTTCTGGGGCCTCTTaGGCTGGTGGCGGTATGACG +
Preference number: 4 (lower is better)
Translates to: KLSHADHYKVCPSQLLGSVSGAS*AGGGMT
Trigger: CGTCATACCGCCACCAGCCCAAGAGGCCCCAGAAAC...ACTACCAAGCAACTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp TTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCCTGCCGATAGAGTCTGCCAGTTCTCCCTaGTTGCCTTGGTTACGCAGG +
Preference number: 4 (lower is better)
Translates to: FTHHPLGPQFTDPSLPIESASSP*LPWLRR
Trigger: CCTGCGTAACCAAGGCAACCAGGGAGAACTGGCAGA...CTCTATCGGCAGGCTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp CTGTTCCTCCTGAGGGCCACCTCTTTATGTGTTTTACTGCAAACTCCTAGGAGTATCCCCAGGTCCCACTaGCTCCCGATGAGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: LFLLRATSLCVLLQTPRSIPRSH*LPMRLL
Trigger: CAGCAGCCTCATCGGGAGTCAGTGGGACCTGGGGAT...ACTCCTAGGAGTTTGCAGTAAAACACATAAAGAGGTGGCCCTCAGGAGGAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp TTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCCTGCCGATAGAGCTCGGTAATTGGTGGTaGGGGGCAATGACAATCTCG +
Preference number: 4 (lower is better)
Translates to: FTHHPLGPQFTDPSLPIELGNWW*GAMTIS
Trigger: CGAGATTGTCATTGCCCCTCACCACCAATTACCGAG...CTCTATCGGCAGGCTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS-3UTR TCA 90 bp TTTCTAGTTCTAGTTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGTGGCTAGGTCTAGACTaGGGGTCCTCCCGCACACCG +
Preference number: 4 (lower is better)
Translates to: FLVLVHTPSSGASIHRPKWLGLD*GSSRTP
Trigger: CGGTGTGCGGGAGGACCCTCAGTCTAGACCTAGCCA...CTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAACTAGAACTAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS-3UTR GCA 90 bp CTGTTGTCCGTAAAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGCATCTGAACCGGCAGTaGCTGAGGCAGCTGCAGAAT +
Preference number: 4 (lower is better)
Translates to: LLSVKLSHADHYKVCPSQHLNRQ*LRQLQN
Trigger: ATTCTGCAGCTGCCTCAGGCACTGCCGGTTCAGATG...CTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTTTACGGACAACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp CTGTTGTCCGTAAAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGATTGGCCCCCGAGTCTaGATCCCTAGCCACGATTGT +
Preference number: 4 (lower is better)
Translates to: LLSVKLSHADHYKVCPSQIGPRV*IPSHDC
Trigger: ACAATCGTGGCTAGGGATGCAGACTCGGGGGCCAAT...CTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTTTACGGACAACAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp AAGTCTTCATCTCAGGGACTTTTCCTCTTCCGTTCCTTTGTTTGCAATCCAGTGTGCTGGCCAGGCGCGTaGCTGTTGGGCTCAGCTCGG +
Preference number: 4 (lower is better)
Translates to: KSSSQGLFLFRSFVCNPVCWPGA*LLGSAR
Trigger: CCGAGCTGAGCCCAACAGGCACGCGCCTGGCCAGCA...CACTGGATTGCAAACAAAGGAACGGAAGAGGAAAAGTCCCTGAGATGAAGACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS-3UTR CCA 90 bp AGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGGTTATTTTCCCAAGTaGAGACCTCGTACCGGCTCT +
Preference number: 4 (lower is better)
Translates to: RDWDWADASSFYPVLVRAGYFPK*RPRTGS
Trigger: AGAGCCGGTACGAGGTCTCCACTTGGGAAAATAACC...CGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp TTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCCTGCCGATAGAGTCTCCCTGGTTGCCTTaGTTACGCAGGGTCCTGTAT +
Preference number: 4 (lower is better)
Translates to: FTHHPLGPQFTDPSLPIESPWLP*LRRVLY
Trigger: ATACAGGACCCTGCGTAACCAAGGCAACCAGGGAGA...CTCTATCGGCAGGCTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp AAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTTGCTTGGTAGTAAGGCCCTCTGTGTCTaGGATGGTACCCCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: KLSHADHYKVCPSQLLGSKALCV*DGTPAA
Trigger: AGCAGCAGGGGTACCATCCCAGACACAGAGGGCCTT...ACTACCAAGCAACTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp TATTCCCTGAGATCCTCAAGACCCGAGTGCCCTAACATTTCCCAGGGGACCCAGGACAATCCCCTGAAATaGACAAGTAGCTTCCTGGCC +
Preference number: 4 (lower is better)
Translates to: YSLRSSRPECPNISQGTQDNPLK*TSSFLA
Trigger: GGCCAGGAAGCTACTTGTTCATTTCAGGGGATTGTC...CTGGGTCCCCTGGGAAATGTTAGGGCACTCGGGTCTTGAGGATCTCAGGGAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp TTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCCTGCCGATAGAGCTGTTCATAGTCCAGTaGCCTCTGAGCAGTGACTTC +
Preference number: 4 (lower is better)
Translates to: FTHHPLGPQFTDPSLPIELFIVQ*PLSSDF
Trigger: GAAGTCACTGCTCAGAGGTCACTGGACTATGAACAG...CTCTATCGGCAGGCTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp CTGTTGTCCGTAAAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTGCCACAGCCAAGTCTaGTCTCAGCTGCCTTCTTTC +
Preference number: 4 (lower is better)
Translates to: LLSVKLSHADHYKVCPSQCHSQV*SQLPSF
Trigger: GAAAGAAGGCAGCTGAGAGCAGACTTGGCTGTGGCA...CTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTTTACGGACAACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS-3UTR CCA 90 bp AGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGTCTTTGGGAAACTGTaGCTGGTGGTCATTGATGTC +
Preference number: 4 (lower is better)
Translates to: RDWDWADASSFYPVLVRAVFGKL*LVVIDV
Trigger: GACATCAATGACCACCAGCCACAGTTTCCCAAAGAC...CGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp AAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTTGCTTGGTAGTTCAGCTGATAAGGGCTaGGGTCCTTGGTCTTGGGCA +
Preference number: 4 (lower is better)
Translates to: KLSHADHYKVCPSQLLGSSADKG*GPWSWA
Trigger: TGCCCAAGACCAAGGACCCCAGCCCTTATCAGCTGA...ACTACCAAGCAACTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp AAGTCTTCATCTCAGGGACTTTTCCTCTTCCGTTCCTTTGTTTGCAATCCAGTGGGTTGCAGAGGACGCTaGTGGGCTCTGTGGGGCCTC +
Preference number: 4 (lower is better)
Translates to: KSSSQGLFLFRSFVCNPVGCRGR*WALWGL
Trigger: GAGGCCCCACAGAGCCCACCAGCGTCCTCTGCAACC...CACTGGATTGCAAACAAAGGAACGGAAGAGGAAAAGTCCCTGAGATGAAGACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp TATTCCCTGAGATCCTCAAGACCCGAGTGCCCTAACATTTCCCAGGGGACCCAGATTTCCTCGGTGGTTTaGTTTGGGCTGGAATTGGCC +
Preference number: 4 (lower is better)
Translates to: YSLRSSRPECPNISQGTQISSVV*FGLELA
Trigger: GGCCAATTCCAGCCCAAACCAAACCACCGAGGAAAT...CTGGGTCCCCTGGGAAATGTTAGGGCACTCGGGTCTTGAGGATCTCAGGGAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp GTTTTCCCTTTATTAGTAGGTCAGAAGGCATTGCCTGGCTCTTCCAAGAGCCCACCTGGGAAGATCTTCTaGCACCAGCGACGTCTGGGA +
Preference number: 4 (lower is better)
Translates to: VFPLLVGQKALPGSSKSPPGKIF*HQRRLG
Trigger: TCCCAGACGTCGCTGGTGTCAGAAGATCTTCCCAGG...TGGGCTCTTGGAAGAGCCAGGCAATGCCTTCTGACCTACTAATAAAGGGAAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp CTGTTGTCCGTAAAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTCACTGAGCACAGGCTaGATCACTTCTGGGGCATTA +
Preference number: 4 (lower is better)
Translates to: LLSVKLSHADHYKVCPSQSLSTG*ITSGAL
Trigger: TAATGCCCCAGAAGTGATTCAGCCTGTGCTCAGTGA...CTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTTTACGGACAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp AAGTCTTCATCTCAGGGACTTTTCCTCTTCCGTTCCTTTGTTTGCAATCCAGTGTGGCTAGGTCTAGACTaGGGGTCCTCCCGCACACCG +
Preference number: 4 (lower is better)
Translates to: KSSSQGLFLFRSFVCNPVWLGLD*GSSRTP
Trigger: CGGTGTGCGGGAGGACCCTCAGTCTAGACCTAGCCA...CACTGGATTGCAAACAAAGGAACGGAAGAGGAAAAGTCCCTGAGATGAAGACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS-3UTR GCA 90 bp GGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGAGAGATTTCCAGTTCCTaGTCGTCTTTGGGAAACTGT +
Preference number: 4 (lower is better)
Translates to: GLGLGRCELLLPCACKSGEISSS*SSLGNC
Trigger: ACAGTTTCCCAAAGACGAGCAGGAACTGGAAATCTC...TCCGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp AGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGCTGTCTTGGCATCTATaGCAAAGGTGTTCATCACCT +
Preference number: 4 (lower is better)
Translates to: RDWDWADASSFYPVLVRALSWHL*QRCSSP
Trigger: AGGTGATGAACACCTTTGGCATAGATGCCAAGACAG...CGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp TCTGCCCTAGTCAGTTGCTTGGTAGTCCTGGACTCCTGCTTCCTCTGTGAGGAAGGAAACTGTGGCTGGTaGTCATTGATGTCTAGCACC +
Preference number: 4 (lower is better)
Translates to: SALVSCLVVLDSCFLCEEGNCGW*SLMSST
Trigger: GGTGCTAGACATCAATGACCACCAGCCACAGTTTCC...TTCCTCACAGAGGAAGCAGGAGTCCAGGACTACCAAGCAACTGACTAGGGCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp CTGTTGTCCGTAAAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTTAGGACCCGTGTCTTaGTCAAGAGCTCTGTCCAAG +
Preference number: 4 (lower is better)
Translates to: LLSVKLSHADHYKVCPSQLGPVS*SRALSK
Trigger: CTTGGACAGAGCTCTTGACCAAGACACGGGTCCTAA...CTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTTTACGGACAACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp TCTGCCCTAGTCAGTTGCTTGGTAGTCCTGGACTCCTGCTTCCTCTGTGAGGAACAAGCTCTGCATGTTTaGTCTCATCAGGGCCCACAA +
Preference number: 4 (lower is better)
Translates to: SALVSCLVVLDSCFLCEEQALHV*SHQGPQ
Trigger: TTGTGGGCCCTGATGAGACCAAACATGCAGAGCTTG...TTCCTCACAGAGGAAGCAGGAGTCCAGGACTACCAAGCAACTGACTAGGGCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp TCTGCCCTAGTCAGTTGCTTGGTAGTCCTGGACTCCTGCTTCCTCTGTGAGGAAACCTTCAATGAAACTTaGGTCTGCAAGGAGGGGCTG +
Preference number: 4 (lower is better)
Translates to: SALVSCLVVLDSCFLCEETFNET*VCKEGL
Trigger: CAGCCCCTCCTTGCAGACCCAAGTTTCATTGAAGGT...TTCCTCACAGAGGAAGCAGGAGTCCAGGACTACCAAGCAACTGACTAGGGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp GTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGCTCTCACCGCTGGTGGGCTCTGTaGGGCCTCCTCCTTGTCTTG +
Preference number: 4 (lower is better)
Translates to: VMTQQEFHARNLMTNSSHRWWAL*GLLLVL
Trigger: CAAGACAAGGAGGAGGCCCCACAGAGCCCACCAGCG...GTGAGAGCTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp AAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTTGCTTGGTAGTAGCAAGGACAGCAGCTaGGAGATTTGCTGGACAGGA +
Preference number: 4 (lower is better)
Translates to: KLSHADHYKVCPSQLLGSSKDSS*EICWTG
Trigger: TCCTGTCCAGCAAATCTCCCAGCTGCTGTCCTTGCT...ACTACCAAGCAACTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp AAGTCTTCATCTCAGGGACTTTTCCTCTTCCGTTCCTTTGTTTGCAATCCAGTGCCGAGACGAAAGTGCTaGCCAGGCGCGTGCCTGTTG +
Preference number: 4 (lower is better)
Translates to: KSSSQGLFLFRSFVCNPVPRRKC*PGACLL
Trigger: CAACAGGCACGCGCCTGGCCAGCACTTTCGTCTCGG...CACTGGATTGCAAACAAAGGAACGGAAGAGGAAAAGTCCCTGAGATGAAGACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS-3UTR TCA 90 bp AAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTTGCTTGGTAGTGTGGCTGGTGGTCATTaGTGTCTAGCACCTGAATCT +
Preference number: 4 (lower is better)
Translates to: KLSHADHYKVCPSQLLGSVAGGH*CLAPES
Trigger: AGATTCAGGTGCTAGACATCAATGACCACCAGCCAC...ACTACCAAGCAACTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp CTGTTGTCCGTAAAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTTGAGCGTGATGAGGTaGAGAGAGGGTGGGTTATTT +
Preference number: 4 (lower is better)
Translates to: LLSVKLSHADHYKVCPSQLSVMR*REGGLF
Trigger: AAATAACCCACCCTCTCTTCACCTCATCACGCTCAA...CTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTTTACGGACAACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp GTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGCTCTCACGGGCTGGTGGCGGTATaGCGACTCAGCTTCTCGACA +
Preference number: 4 (lower is better)
Translates to: VMTQQEFHARNLMTNSSHGLVAV*RLSFST
Trigger: TGTCGAGAAGCTGAGTCGTCATACCGCCACCAGCCC...GTGAGAGCTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp TCTGCCCTAGTCAGTTGCTTGGTAGTCCTGGACTCCTGCTTCCTCTGTGAGGAACTGGAACTCAAAGCCTaGCATCTGTTCATAGTCCAG +
Preference number: 4 (lower is better)
Translates to: SALVSCLVVLDSCFLCEELELKA*HLFIVQ
Trigger: CTGGACTATGAACAGATGGCAGGCTTTGAGTTCCAG...TTCCTCACAGAGGAAGCAGGAGTCCAGGACTACCAAGCAACTGACTAGGGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp TCTGCCCTAGTCAGTTGCTTGGTAGTCCTGGACTCCTGCTTCCTCTGTGAGGAATTGCCCTCTGTCCTCTaGTATCACCTGGAACTCAAA +
Preference number: 4 (lower is better)
Translates to: SALVSCLVVLDSCFLCEELPSVL*YHLELK
Trigger: TTTGAGTTCCAGGTGATAGCAGAGGACAGAGGGCAA...TTCCTCACAGAGGAAGCAGGAGTCCAGGACTACCAAGCAACTGACTAGGGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp AAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTTGCTTGGTAGTAAGTCTGCTCTCAGCTaGCTTCTTTCTACCCTGTGC +
Preference number: 4 (lower is better)
Translates to: KLSHADHYKVCPSQLLGSKSALS*LLSTLC
Trigger: GCACAGGGTAGAAAGAAGGCAGCTGAGAGCAGACTT...ACTACCAAGCAACTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS-3UTR CCA 90 bp GGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGAACTTCCTCTGTCACTTaGAATTTCACCATGACAGTG +
Preference number: 4 (lower is better)
Translates to: GLGLGRCELLLPCACKSGTSSVT*NFTMTV
Trigger: CACTGTCATGGTGAAATTCCAAGTGACAGAGGAAGT...TCCGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp GGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGAACTCTCAGCAAACACTaGACTATTGTCATTGGAGTC +
Preference number: 4 (lower is better)
Translates to: GLGLGRCELLLPCACKSGTLSKH*TIVIGV
Trigger: GACTCCAATGACAATAGTCCAGTGTTTGCTGAGAGT...TCCGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp TTCGGAACTGAGTGTCTTCTGTCTGCAAGTCTTCATCTCAGGGACTTTTCCTCTAGAAGAGTTCCCCATTaGCCCCCGAGTCTGCATCCC +
Preference number: 4 (lower is better)
Translates to: FGTECLLSASLHLRDFSSRRVPH*PPSLHP
Trigger: GGGATGCAGACTCGGGGGCCAATGGGGAACTCTTCT...AGAGGAAAAGTCCCTGAGATGAAGACTTGCAGACAGAAGACACTCAGTTCCGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp GTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGCTCTCACGGCCTCTTGGGCTGGTaGCGGTATGACGACTCAGCT +
Preference number: 4 (lower is better)
Translates to: VMTQQEFHARNLMTNSSHGLLGW*RYDDSA
Trigger: AGCTGAGTCGTCATACCGCCACCAGCCCAAGAGGCC...GTGAGAGCTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp GTTTTCCCTTTATTAGTAGGTCAGAAGGCATTGCCTGGCTCTTCCAAGAGCCCACTCGGTGGTTTGGTTTaGGCTGGAATTGGCCCTGGT +
Preference number: 4 (lower is better)
Translates to: VFPLLVGQKALPGSSKSPLGGLV*AGIGPG
Trigger: ACCAGGGCCAATTCCAGCCCAAACCAAACCACCGAG...TGGGCTCTTGGAAGAGCCAGGCAATGCCTTCTGACCTACTAATAAAGGGAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp CTGTTCCTCCTGAGGGCCACCTCTTTATGTGTTTTACTGCAAACTCCTAGGAGTCAGAGAGGCACTCTCTaGGATTTCCAGTTCCTGCTC +
Preference number: 4 (lower is better)
Translates to: LFLLRATSLCVLLQTPRSQRGTL*DFQFLL
Trigger: GAGCAGGAACTGGAAATCTCAGAGAGTGCCTCTCTG...ACTCCTAGGAGTTTGCAGTAAAACACATAAAGAGGTGGCCCTCAGGAGGAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp TTTCTAGTTCTAGTTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGGCCCCAAGGAAGGGCTaGGGAAAAAGAGATGAGCAT +
Preference number: 4 (lower is better)
Translates to: FLVLVHTPSSGASIHRPKAPRKG*GKRDEH
Trigger: ATGCTCATCTCTTTTTCCTCAGCCCTTCCTTGGGGC...CTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAACTAGAACTAGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp GTTTTCCCTTTATTAGTAGGTCAGAAGGCATTGCCTGGCTCTTCCAAGAGCCCACTCGGTAATTGGTGGTaGGGGGCAATGACAATCTCG +
Preference number: 4 (lower is better)
Translates to: VFPLLVGQKALPGSSKSPLGNWW*GAMTIS
Trigger: CGAGATTGTCATTGCCCCTCACCACCAATTACCGAG...TGGGCTCTTGGAAGAGCCAGGCAATGCCTTCTGACCTACTAATAAAGGGAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS-3UTR GCA 90 bp GTTTTCCCTTTATTAGTAGGTCAGAAGGCATTGCCTGGCTCTTCCAAGAGCCCACGGGAGGCATTCCTCTaGCTGGGATGGTTAAAGAGA +
Preference number: 4 (lower is better)
Translates to: VFPLLVGQKALPGSSKSPREAFL*LGWLKR
Trigger: TCTCTTTAACCATCCCAGGCAGAGGAATGCCTCCCG...TGGGCTCTTGGAAGAGCCAGGCAATGCCTTCTGACCTACTAATAAAGGGAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp CTGTTCCTCCTGAGGGCCACCTCTTTATGTGTTTTACTGCAAACTCCTAGGAGTGTTCCTGCTCGTCTTTaGGAAACTGTGGCTGGTGGT +
Preference number: 4 (lower is better)
Translates to: LFLLRATSLCVLLQTPRSVPARL*ETVAGG
Trigger: ACCACCAGCCACAGTTTCCCAAAGACGAGCAGGAAC...ACTCCTAGGAGTTTGCAGTAAAACACATAAAGAGGTGGCCCTCAGGAGGAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp GTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGCTCTCACGGTTTGGGCTGGAATTaGCCCTGGTGCAGCAAGGAC +
Preference number: 4 (lower is better)
Translates to: VMTQQEFHARNLMTNSSHGLGWN*PWCSKD
Trigger: GTCCTTGCTGCACCAGGGCCAATTCCAGCCCAAACC...GTGAGAGCTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp GGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGATATTTATTTCCTCGGTaGTTTGGTTTGGGCTGGAAT +
Preference number: 4 (lower is better)
Translates to: GLGLGRCELLLPCACKSGYLFPR*FGLGWN
Trigger: ATTCCAGCCCAAACCAAACCACCGAGGAAATAAATA...TCCGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp TTCGGAACTGAGTGTCTTCTGTCTGCAAGTCTTCATCTCAGGGACTTTTCCTCTCTTGGAATTTCACCATaGCAGTGGCCACCTCCTGAC +
Preference number: 4 (lower is better)
Translates to: FGTECLLSASLHLRDFSSLGISP*QWPPPD
Trigger: GTCAGGAGGTGGCCACTGTCATGGTGAAATTCCAAG...AGAGGAAAAGTCCCTGAGATGAAGACTTGCAGACAGAAGACACTCAGTTCCGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp GTTTTCCCTTTATTAGTAGGTCAGAAGGCATTGCCTGGCTCTTCCAAGAGCCCAGAGACCGTTGTTTCCTaGGTCCAAGTCATTCGCACT +
Preference number: 4 (lower is better)
Translates to: VFPLLVGQKALPGSSKSPETVVS*VQVIRT
Trigger: AGTGCGAATGACTTGGACTCAGGAAACAACGGTCTC...TGGGCTCTTGGAAGAGCCAGGCAATGCCTTCTGACCTACTAATAAAGGGAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp CTGTTCCTCCTGAGGGCCACCTCTTTATGTGTTTTACTGCAAACTCCTAGGAGTTGGCTTTGCCTTCACTaGGCACAGGCTGAATCACTT +
Preference number: 4 (lower is better)
Translates to: LFLLRATSLCVLLQTPRSWLCLH*AQAESL
Trigger: AAGTGATTCAGCCTGTGCTCAGTGAAGGCAAAGCCA...ACTCCTAGGAGTTTGCAGTAAAACACATAAAGAGGTGGCCCTCAGGAGGAACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp TTTCTAGTTCTAGTTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCACCACCACAAGCTCTaGATGTTTGGTCTCATCAGG +
Preference number: 4 (lower is better)
Translates to: FLVLVHTPSSGASIHRPKHHHKL*MFGLIR
Trigger: CCTGATGAGACCAAACATGCAGAGCTTGTGGTGGTG...CTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAACTAGAACTAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp GTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGCTCTCACAATGAAACTTGGGTCTaGAAGGAGGGGCTGCCCTGG +
Preference number: 4 (lower is better)
Translates to: VMTQQEFHARNLMTNSSHNETWV*KEGLPW
Trigger: CCAGGGCAGCCCCTCCTTGCAGACCCAAGTTTCATT...GTGAGAGCTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp CATGCCTGTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGTCCCCATTGGGTCCTTaGTCGGGATCTGTAGCAGTC +
Preference number: 4 (lower is better)
Translates to: HACHDPTRVSCQEFDDKQSPLGP*SGSVAV
Trigger: GACTGCTACAGATCCCGACCAAGGACCCAATGGGGA...CTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGACAGGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp CATGCCTGTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGACTCTACCTCCCCATTaGGTCCTTGGTCGGGATCTG +
Preference number: 4 (lower is better)
Translates to: HACHDPTRVSCQEFDDKQTLPPH*VLGRDL
Trigger: CAGATCCCGACCAAGGACCCAATGGGGAGGTAGAGT...CTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGACAGGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp CTGTTCCTCCTGAGGGCCACCTCTTTATGTGTTTTACTGCAAACTCCTAGGAGTGGTGTTCATCACCTCTaGGGACACATGCTTGCCAAA +
Preference number: 4 (lower is better)
Translates to: LFLLRATSLCVLLQTPRSGVHHL*GHMLAK
Trigger: TTTGGCAAGCATGTGTCCCCAGAGGTGATGAACACC...ACTCCTAGGAGTTTGCAGTAAAACACATAAAGAGGTGGCCCTCAGGAGGAACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp GTGTTTTACTGCAAACTCCTAGGAGTGAAACAAGCTGTCCCTGTTGTCCGTAAAGGCCTGGGATGGAATTaGGACCCAAATCCCTTGCCT +
Preference number: 4 (lower is better)
Translates to: VFYCKLLGVKQAVPVVRKGLGWN*DPNPLP
Trigger: AGGCAAGGGATTTGGGTCCCAATTCCATCCCAGGCC...TTTACGGACAACAGGGACAGCTTGTTTCACTCCTAGGAGTTTGCAGTAAAACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp TTTCTAGTTCTAGTTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGTGGGGTCCTTGGTCTTaGGCAAACACAGTGAGAGTA +
Preference number: 4 (lower is better)
Translates to: FLVLVHTPSSGASIHRPKWGPWS*ANTVRV
Trigger: TACTCTCACTGTGTTTGCCCAAGACCAAGGACCCCA...CTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAACTAGAACTAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp CATGCCTGTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGAAGGGCTGGGGTCCTTaGTCTTGGGCAAACACAGTG +
Preference number: 4 (lower is better)
Translates to: HACHDPTRVSCQEFDDKQKGWGP*SWANTV
Trigger: CACTGTGTTTGCCCAAGACCAAGGACCCCAGCCCTT...CTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGACAGGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp TTCGGAACTGAGTGTCTTCTGTCTGCAAGTCTTCATCTCAGGGACTTTTCCTCTAGAGCAATCCAAAGATaGCCAGCAGTACAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: FGTECLLSASLHLRDFSSRAIQR*PAVQPG
Trigger: GCCTGGCTGTACTGCTGGCCATCTTTGGATTGCTCT...AGAGGAAAAGTCCCTGAGATGAAGACTTGCAGACAGAAGACACTCAGTTCCGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp GTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGCTCTCACTGGTTTGGTTTGGGCTaGAATTGGCCCTGGTGCAGC +
Preference number: 4 (lower is better)
Translates to: VMTQQEFHARNLMTNSSHWFGLG*NWPWCS
Trigger: GCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCA...GTGAGAGCTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp GTTTTCCCTTTATTAGTAGGTCAGAAGGCATTGCCTGGCTCTTCCAAGAGCCCACTCCTGACAATCCCCTaGAATGAACAAGTAGCTTCC +
Preference number: 4 (lower is better)
Translates to: VFPLLVGQKALPGSSKSPLLTIP*NEQVAS
Trigger: GGAAGCTACTTGTTCATTTCAGGGGATTGTCAGGAG...TGGGCTCTTGGAAGAGCCAGGCAATGCCTTCTGACCTACTAATAAAGGGAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp TTTCTAGTTCTAGTTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCTTGGGCAAACACAGTaGGAGTATATATGGGCCACT +
Preference number: 4 (lower is better)
Translates to: FLVLVHTPSSGASIHRPKLGQTQ*EYIWAT
Trigger: AGTGGCCCATATATACTCTCACTGTGTTTGCCCAAG...CTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAACTAGAACTAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp CATGCCTGTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGGGGACCCAAATCCCTTaGCTGGACATCCACCTCATA +
Preference number: 4 (lower is better)
Translates to: HACHDPTRVSCQEFDDKQGTQIP*LDIHLI
Trigger: TATGAGGTGGATGTCCAGGCAAGGGATTTGGGTCCC...CTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGACAGGCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp TTCGGAACTGAGTGTCTTCTGTCTGCAAGTCTTCATCTCAGGGACTTTTCCTCTGTATATATGGGCCACTaGTCTCTGTCCAGTGTGGCA +
Preference number: 4 (lower is better)
Translates to: FGTECLLSASLHLRDFSSVYMGH*SLSSVA
Trigger: TGCCACACTGGACAGAGAGCAGTGGCCCATATATAC...AGAGGAAAAGTCCCTGAGATGAAGACTTGCAGACAGAAGACACTCAGTTCCGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp GTTTTCCCTTTATTAGTAGGTCAGAAGGCATTGCCTGGCTCTTCCAAGAGCCCAACATTAATGAATAGCTaGCCCAAGGAAGGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: VFPLLVGQKALPGSSKSPTLMNS*PKEGLR
Trigger: CCTCAGCCCTTCCTTGGGGCAGCTATTCATTAATGT...TGGGCTCTTGGAAGAGCCAGGCAATGCCTTCTGACCTACTAATAAAGGGAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp GTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGCTCTCACCCTTTCTCTCTGTCCTaGAGATGGACACGAACAGGG +
Preference number: 4 (lower is better)
Translates to: VMTQQEFHARNLMTNSSHPFSLS*RWTRTG
Trigger: CCCTGTTCGTGTCCATCTGCAGGACAGAGAGAAAGG...GTGAGAGCTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp TTTCTAGTTCTAGTTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCCATCAGTGTCTCCTTaGTGGTATCCTTGTGAGATG +
Preference number: 4 (lower is better)
Translates to: FLVLVHTPSSGASIHRPKPSVSP*WYPCEM
Trigger: CATCTCACAAGGATACCAGCAAGGAGACACTGATGG...CTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAACTAGAACTAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp AAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTTGCTTGGTAGTATAAGAACTTTGCAATaGCCTGGGATGGAATTGGGA +
Preference number: 4 (lower is better)
Translates to: KLSHADHYKVCPSQLLGSIRTLQ*PGMELG
Trigger: TCCCAATTCCATCCCAGGCCATTGCAAAGTTCTTAT...ACTACCAAGCAACTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp TTTCTAGTTCTAGTTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGGAGGTGAAGAGAGGGTaGGTTATTTTCCCAAGTGGA +
Preference number: 4 (lower is better)
Translates to: FLVLVHTPSSGASIHRPKEVKRG*VIFPSG
Trigger: TCCACTTGGGAAAATAACCCACCCTCTCTTCACCTC...CTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAACTAGAACTAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp AAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTTGCTTGGTAGTTTCCTCTGCCTGGGATaGTTAAAGAGAAAGTTGAAG +
Preference number: 4 (lower is better)
Translates to: KLSHADHYKVCPSQLLGSFLCLG*LKRKLK
Trigger: CTTCAACTTTCTCTTTAACCATCCCAGGCAGAGGAA...ACTACCAAGCAACTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp AAGTCTTCATCTCAGGGACTTTTCCTCTTCCGTTCCTTTGTTTGCAATCCAGTGTGGATATCTGCCTTCTaGATGTGTTTCTGGGGCCTC +
Preference number: 4 (lower is better)
Translates to: KSSSQGLFLFRSFVCNPVWISAF*MCFWGL
Trigger: GAGGCCCCAGAAACACATTCAGAAGGCAGATATCCA...CACTGGATTGCAAACAAAGGAACGGAAGAGGAAAAGTCCCTGAGATGAAGACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp GTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGCTCTCACAAGTCTGCTCTCAGCTaGCTTCTTTCTACCCTGTGC +
Preference number: 4 (lower is better)
Translates to: VMTQQEFHARNLMTNSSHKSALS*LLSTLC
Trigger: GCACAGGGTAGAAAGAAGGCAGCTGAGAGCAGACTT...GTGAGAGCTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS-3UTR CCA 90 bp GTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGCTCTCACGGGCAAAGTGTTCACTaGGAGACAGGGAGTAGGAAT +
Preference number: 4 (lower is better)
Translates to: VMTQQEFHARNLMTNSSHGQSVH*ETGSRN
Trigger: ATTCCTACTCCCTGTCTCCCAGTGAACACTTTGCCC...GTGAGAGCTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp AAGTCTTCATCTCAGGGACTTTTCCTCTTCCGTTCCTTTGTTTGCAATCCAGTGTGGCGCAGAATGATCTaGCCTGTCTTGGCATCTATG +
Preference number: 4 (lower is better)
Translates to: KSSSQGLFLFRSFVCNPVWRRMI*PVLASM
Trigger: CATAGATGCCAAGACAGGCCAGATCATTCTGCGCCA...CACTGGATTGCAAACAAAGGAACGGAAGAGGAAAAGTCCCTGAGATGAAGACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp GTGTTTTACTGCAAACTCCTAGGAGTGAAACAAGCTGTCCCTGTTGTCCGTAAATCCTCTGCTATCACCTaGAACTCAAAGCCTGCCATC +
Preference number: 4 (lower is better)
Translates to: VFYCKLLGVKQAVPVVRKSSAIT*NSKPAI
Trigger: GATGGCAGGCTTTGAGTTCCAGGTGATAGCAGAGGA...TTTACGGACAACAGGGACAGCTTGTTTCACTCCTAGGAGTTTGCAGTAAAACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp CATGCCTGTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGTCTCTGTCCTGCAGATaGACACGAACAGGGCTAAGA +
Preference number: 4 (lower is better)
Translates to: HACHDPTRVSCQEFDDKQSLSCR*TRTGLR
Trigger: TCTTAGCCCTGTTCGTGTCCATCTGCAGGACAGAGA...CTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGACAGGCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
3UTR CAA 72 bp ACAAATCCTGAGTCTGCCTCTACTCCTTGCTCAATCTaGGGGAAGAACCCTCAATGTTCCCAAGCTTCATTC +
Preference number: 4 (lower is better)
Translates to: TNPESASTPCSI*GKNPQCSQASF
Trigger: GAATGAAGCTTGGGAACATTGAGGGTTCTTCCCCAAGATTGAGCAAGGAGTAGAGGCAGACTCAGGATTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS-3UTR TCA 90 bp GTTTTCCCTTTATTAGTAGGTCAGAAGGCATTGCCTGGCTCTTCCAAGAGCCCATTGACATCACTAACCTaGATTTGGAGCTCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: VFPLLVGQKALPGSSKSPLTSLT*IWSSFS
Trigger: TGAGAAGGAGCTCCAAATTCAGGTTAGTGATGTCAA...TGGGCTCTTGGAAGAGCCAGGCAATGCCTTCTGACCTACTAATAAAGGGAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp CATGCCTGTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGGTGACCTCTGAGCAGTaGCTTCTCCTGTTTCAAAGT +
Preference number: 4 (lower is better)
Translates to: HACHDPTRVSCQEFDDKQVTSEQ*LLLFQS
Trigger: ACTTTGAAACAGGAGAAGTCACTGCTCAGAGGTCAC...CTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGACAGGCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp AAGTCTTCATCTCAGGGACTTTTCCTCTTCCGTTCCTTTGTTTGCAATCCAGTGCTGGGGACACATGCTTaGCAAAGAAGAACTCTACCT +
Preference number: 4 (lower is better)
Translates to: KSSSQGLFLFRSFVCNPVLGTHA*QRRTLP
Trigger: AGGTAGAGTTCTTCTTTGGCAAGCATGTGTCCCCAG...CACTGGATTGCAAACAAAGGAACGGAAGAGGAAAAGTCCCTGAGATGAAGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp TTCGGAACTGAGTGTCTTCTGTCTGCAAGTCTTCATCTCAGGGACTTTTCCTCTACACTTTTCCATTACTaGCCAAGTCAGCATCATGCG +
Preference number: 4 (lower is better)
Translates to: FGTECLLSASLHLRDFSSTLFHY*PSQHHA
Trigger: CGCATGATGCTGACTTGGGCAGTAATGGAAAAGTGT...AGAGGAAAAGTCCCTGAGATGAAGACTTGCAGACAGAAGACACTCAGTTCCGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp CTGTTCCTCCTGAGGGCCACCTCTTTATGTGTTTTACTGCAAACTCCTAGGAGTCATTCCCACTTTGAATaGTGTAGAAGAGTTCCCCAT +
Preference number: 4 (lower is better)
Translates to: LFLLRATSLCVLLQTPRSHSHFE*CRRVPH
Trigger: ATGGGGAACTCTTCTACAGCATTCAAAGTGGGAATG...ACTCCTAGGAGTTTGCAGTAAAACACATAAAGAGGTGGCCCTCAGGAGGAACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp CTGTTCCTCCTGAGGGCCACCTCTTTATGTGTTTTACTGCAAACTCCTAGGAGTAGATCAAAATATGAGTaGAGTTCCCTGTCCAACTCC +
Preference number: 4 (lower is better)
Translates to: LFLLRATSLCVLLQTPRSRSKYE*SSLSNS
Trigger: GGAGTTGGACAGGGAACTCCACTCATATTTTGATCT...ACTCCTAGGAGTTTGCAGTAAAACACATAAAGAGGTGGCCCTCAGGAGGAACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CCA 90 bp GTGTTTTACTGCAAACTCCTAGGAGTGAAACAAGCTGTCCCTGTTGTCCGTAAAAACTTTGCAATGGCCTaGGATGGAATTGGGACCCAA +
Preference number: 4 (lower is better)
Translates to: VFYCKLLGVKQAVPVVRKNFAMA*DGIGTQ
Trigger: TTGGGTCCCAATTCCATCCCAGGCCATTGCAAAGTT...TTTACGGACAACAGGGACAGCTTGTTTCACTCCTAGGAGTTTGCAGTAAAACAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
3UTR CAA 72 bp CCTGTCATGACCCAACAAGAGTTTCATGCCAGGAATTaGATGACAAACAGCTCTCACTCCAAACAGAGTGAG +
Preference number: 4 (lower is better)
Translates to: PVMTQQEFHARN*MTNSSHSKQSE
Trigger: CTCACTCTGTTTGGAGTGAGAGCTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGACAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS-3UTR TCA 90 bp CATGCCTGTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGCACCAGATCAAAATATaGGTGGAGTTCCCTGTCCAA +
Preference number: 4 (lower is better)
Translates to: HACHDPTRVSCQEFDDKQHQIKI*VEFPVQ
Trigger: TTGGACAGGGAACTCCACTCATATTTTGATCTGGTG...CTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGACAGGCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR TCA 90 bp CATGCCTGTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGGTCCTTGATACGGTATaGCACTTTTCCATTACTGCC +
Preference number: 4 (lower is better)
Translates to: HACHDPTRVSCQEFDDKQVLDTV*HFSITA
Trigger: GGCAGTAATGGAAAAGTGTCATACCGTATCAAGGAC...CTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGACAGGCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR GCA 90 bp CATGCCTGTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGATGACAAACAGCACCAGGTGGATATCTaGCTTCTGAATGTGTTTCTG +
Preference number: 4 (lower is better)
Translates to: HACHDPTRVSCQEFDDKQHQVDI*LLNVFL
Trigger: CAGAAACACATTCAGAAGGCAGATATCCACCTGGTG...CTGTTTGTCATCAAATTCCTGGCATGAAACTCTTGTTGGGTCATGACAGGCATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 90 bp CCTGTGCTTCTGAAGCTGAGGCCCCACTGGTGGCTAGGTCTAGACTaGGGGTCCTCCCGCACACCGAGAGCCTCCGCAAAGCCGCGGACG +
Preference number: 5 (lower is better)
Translates to: PVLLKLRPHWWLGLD*GSSRTPRASAKPRT
Trigger: CGTCCGCGGCTTTGCGGAGGCTCTCGGTGTGCGGGAGGACCCTCAGTCTAGACCTAGCCACCAGTGGGGCCTCAGCTTCAGAAGCACAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS GCA 90 bp CCAGCAGAGAGCTCATCTCCGAGACGAAAGTGCTGGCCAGGCGCGTaGCTGTTGGGCTCAGCTCGGGTCCCGGTCCAACTGTCTTGCCGA +
Preference number: 5 (lower is better)
Translates to: PAESSSPRRKCWPGA*LLGSARVPVQLSCR
Trigger: TCGGCAAGACAGTTGGACCGGGACCCGAGCTGAGCCCAACAGGCACGCGCCTGGCCAGCACTTTCGTCTCGGAGATGAGCTCTCTGCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS-3UTR CAA 90 bp AGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGCCAGGCGCGTGCCTGTaGGGCTCAGCTCGGGTCCCG +
Preference number: 5 (lower is better)
Translates to: RDWDWADASSFYPVLVRAPGACL*GSARVP
Trigger: CGGGACCCGAGCTGAGCCCAACAGGCACGCGCCTGG...CGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS GCA 90 bp GCCCCAACAACATTTCCAGCAGAGAGCTCATCTCCGAGACGAAAGTaGTGGCCAGGCGCGTGCCTGTTGGGCTCAGCTCGGGTCCCGGTC +
Preference number: 5 (lower is better)
Translates to: APTTFPAESSSPRRK*WPGACLLGSARVPV
Trigger: GACCGGGACCCGAGCTGAGCCCAACAGGCACGCGCCTGGCCAGCACTTTCGTCTCGGAGATGAGCTCTCTGCTGGAAATGTTGTTGGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS TCA 90 bp TCCTCCTCCGGGCTCGGGGGCCCTTCTTCCAGGTCAGGTTCTGCTTaGCCACTAGGCTTGAGGCCTACAAGGCCCTCTGTGTCTGGGATG +
Preference number: 5 (lower is better)
Translates to: SSSGLGGPSSRSGSA*PLGLRPTRPSVSGM
Trigger: CATCCCAGACACAGAGGGCCTTGTAGGCCTCAAGCCTAGTGGTCAAGCAGAACCTGACCTGGAAGAAGGGCCCCCGAGCCCGGAGGAGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp AGAGCTCATCTCCGAGACGAAAGTGCTGGCCAGGCGCGTGCCTGTTaGGCTCAGCTCGGGTCCCGGTCCAACTGTCTTGCCGAATGTCTG +
Preference number: 5 (lower is better)
Translates to: RAHLRDESAGQARAC*AQLGSRSNCLAECL
Trigger: CAGACATTCGGCAAGACAGTTGGACCGGGACCCGAGCTGAGCCCAACAGGCACGCGCCTGGCCAGCACTTTCGTCTCGGAGATGAGCTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS TCA 90 bp CTTCCTGCCGACATAGCTTCTCCCGATCCAGCCGGCTGGAAGTGCTaGGCAGGCCGTCCTCAGAGTTCATCTGAACCGGCAGTGCCTGAG +
Preference number: 5 (lower is better)
Translates to: LPADIASPDPAGWKC*AGRPQSSSEPAVPE
Trigger: CTCAGGCACTGCCGGTTCAGATGAACTCTGAGGACGGCCTGCTCAGCACTTCCAGCCGGCTGGATCGGGAGAAGCTATGTCGGCAGGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 90 bp GAGAGCCTCCGCAAAGCCGCGGACGCAGCTTCCACTGGTACCGTGTaGTGCCCCAACAACATTTCCAGCAGAGAGCTCATCTCCGAGACG +
Preference number: 5 (lower is better)
Translates to: ESLRKAADAASTGTV*CPNNISSRELISET
Trigger: CGTCTCGGAGATGAGCTCTCTGCTGGAAATGTTGTTGGGGCAGCACACGGTACCAGTGGAAGCTGCGTCCGCGGCTTTGCGGAGGCTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS CCA 90 bp CCAACAACATTTCCAGCAGAGAGCTCATCTCCGAGACGAAAGTGCTaGCCAGGCGCGTGCCTGTTGGGCTCAGCTCGGGTCCCGGTCCAA +
Preference number: 5 (lower is better)
Translates to: PTTFPAESSSPRRKC*PGACLLGSARVPVQ
Trigger: TTGGACCGGGACCCGAGCTGAGCCCAACAGGCACGCGCCTGGCCAGCACTTTCGTCTCGGAGATGAGCTCTCTGCTGGAAATGTTGTTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS GCA 90 bp GGAAGTGCTGAGCAGGCCGTCCTCAGAGTTCATCTGAACCGGCAGTaGCTGAGGCAGCTGCAGAATCTGGAAGGCATCTCCTGCCTTCCC +
Preference number: 5 (lower is better)
Translates to: GSAEQAVLRVHLNRQ*LRQLQNLEGISCLP
Trigger: GGGAAGGCAGGAGATGCCTTCCAGATTCTGCAGCTGCCTCAGGCACTGCCGGTTCAGATGAACTCTGAGGACGGCCTGCTCAGCACTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 90 bp GCCCCTGTGGCAAGCACGTCAAATGACACCAGACAGGGATCTTCCTaGCGACATAGCTTCTCCCGATCCAGCCGGCTGGAAGTGCTGAGC +
Preference number: 5 (lower is better)
Translates to: APVASTSNDTRQGSS*RHSFSRSSRLEVLS
Trigger: GCTCAGCACTTCCAGCCGGCTGGATCGGGAGAAGCTATGTCGGCAGGAAGATCCCTGTCTGGTGTCATTTGACGTGCTTGCCACAGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp TCTGTGGGGCCTCCTCCTTGTCTTGGTCTCCAGTCGCCCTCGCTATaGGGCTACCAGGCACCTTCAGAGGCCTTAAGAGTGGTTGGCGTA +
Preference number: 5 (lower is better)
Translates to: SVGPPPCLGLQSPSL*GYQAPSEALRVVGV
Trigger: TACGCCAACCACTCTTAAGGCCTCTGAAGGTGCCTGGTAGCCCCATAGCGAGGGCGACTGGAGACCAAGACAAGGAGGAGGCCCCACAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp CCCCTGCTGCTGCCGCCGGGCTTGGCCAAGTATTTATTTCCTCGGTaGTTTGGTTTGGGCTGGAATTGGCCCTGGTGCAGCAAGGACAGC +
Preference number: 5 (lower is better)
Translates to: PLLLPPGLAKYLFPR*FGLGWNWPWCSKDS
Trigger: GCTGTCCTTGCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCACCGAGGAAATAAATACTTGGCCAAGCCCGGCGGCAGCAGCAGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 90 bp AGCCTCCGCAAAGCCGCGGACGCAGCTTCCACTGGTACCGTGTGCTaGCCCAACAACATTTCCAGCAGAGAGCTCATCTCCGAGACGAAA +
Preference number: 5 (lower is better)
Translates to: SLRKAADAASTGTVC*PNNISSRELISETK
Trigger: TTTCGTCTCGGAGATGAGCTCTCTGCTGGAAATGTTGTTGGGGCAGCACACGGTACCAGTGGAAGCTGCGTCCGCGGCTTTGCGGAGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS CCA 90 bp TCCTGCAGTACCTCCTGGCTCTCTGCCAGTTCTCCCTGGTTGCCTTaGTTACGCAGGGTCCTGTATAGGGTTGGTGTGAGGTGGAAGGGG +
Preference number: 5 (lower is better)
Translates to: SCSTSWLSASSPWLP*LRRVLYRVGVRWKG
Trigger: CCCCTTCCACCTCACACCAACCCTATACAGGACCCTGCGTAACCAAGGCAACCAGGGAGAACTGGCAGAGAGCCAGGAGGTACTGCAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp CTCGCTATGGGGCTACCAGGCACCTTCAGAGGCCTTAAGAGTGGTTaGCGTACAGCAGGTGGGGACTCAGGAAGGTTTAGGTTCTCCCGG +
Preference number: 5 (lower is better)
Translates to: LAMGLPGTFRGLKSG*RTAGGDSGRFRFSR
Trigger: CCGGGAGAACCTAAACCTTCCTGAGTCCCCACCTGCTGTACGCCAACCACTCTTAAGGCCTCTGAAGGTGCCTGGTAGCCCCATAGCGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp GCTGCTGCCGCCGGGCTTGGCCAAGTATTTATTTCCTCGGTGGTTTaGTTTGGGCTGGAATTGGCCCTGGTGCAGCAAGGACAGCAGCTG +
Preference number: 5 (lower is better)
Translates to: AAAAGLGQVFISSVV*FGLELALVQQGQQL
Trigger: CAGCTGCTGTCCTTGCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCACCGAGGAAATAAATACTTGGCCAAGCCCGGCGGCAGCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp TTCTGCTTGACCACTAGGCTTGAGGCCTACAAGGCCCTCTGTGTCTaGGATGGTACCCCTGCTGCTGCCGCCGGGCTTGGCCAAGTATTT +
Preference number: 5 (lower is better)
Translates to: FCLTTRLEAYKALCV*DGTPAAAAGLGQVF
Trigger: AAATACTTGGCCAAGCCCGGCGGCAGCAGCAGGGGTACCATCCCAGACACAGAGGGCCTTGTAGGCCTCAAGCCTAGTGGTCAAGCAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp GTTGGGCTCAGCTCGGGTCCCGGTCCAACTGTCTTGCCGAATGTCTaGAAGGTTCTCGGTTCCTCTGACGTTGTAGCATCGGGGGAAGAC +
Preference number: 5 (lower is better)
Translates to: VGLSSGPGPTVLPNV*KVLGSSDVVASGED
Trigger: GTCTTCCCCCGATGCTACAACGTCAGAGGAACCGAGAACCTTCCAGACATTCGGCAAGACAGTTGGACCGGGACCCGAGCTGAGCCCAAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS-3UTR CAA 90 bp TCTGCCCTAGTCAGTTGCTTGGTAGTCCTGGACTCCTGCTTCCTCTGTGAGGAAGGCCTCCTCCTTGTCTaGGTCTCCAGTCGCCCTCGC +
Preference number: 5 (lower is better)
Translates to: SALVSCLVVLDSCFLCEEGLLLV*VSSRPR
Trigger: GCGAGGGCGACTGGAGACCAAGACAAGGAGGAGGCC...TTCCTCACAGAGGAAGCAGGAGTCCAGGACTACCAAGCAACTGACTAGGGCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp GTTTTCCCTTTATTAGTAGGTCAGAAGGCATTGCCTGGCTCTTCCAAGAGCCCACCAGGCGCGTGCCTGTaGGGCTCAGCTCGGGTCCCG +
Preference number: 5 (lower is better)
Translates to: VFPLLVGQKALPGSSKSPPGACL*GSARVP
Trigger: CGGGACCCGAGCTGAGCCCAACAGGCACGCGCCTGG...TGGGCTCTTGGAAGAGCCAGGCAATGCCTTCTGACCTACTAATAAAGGGAAAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS CCA 90 bp GGCCCTCTGTGTCTGGGATGGTACCCCTGCTGCTGCCGCCGGGCTTaGCCAAGTATTTATTTCCTCGGTGGTTTGGTTTGGGCTGGAATT +
Preference number: 5 (lower is better)
Translates to: GPLCLGWYPCCCRRA*PSIYFLGGLVWAGI
Trigger: AATTCCAGCCCAAACCAAACCACCGAGGAAATAAATACTTGGCCAAGCCCGGCGGCAGCAGCAGGGGTACCATCCCAGACACAGAGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp TATTCCCTGAGATCCTCAAGACCCGAGTGCCCTAACATTTCCCAGGGGACCCAGCCTCGGTGGTTTGGTTaGGGCTGGAATTGGCCCTGG +
Preference number: 5 (lower is better)
Translates to: YSLRSSRPECPNISQGTQPRWFG*GWNWPW
Trigger: CCAGGGCCAATTCCAGCCCAAACCAAACCACCGAGG...CTGGGTCCCCTGGGAAATGTTAGGGCACTCGGGTCTTGAGGATCTCAGGGAATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 90 bp AAGGAGGGGCTGCCCTGGTCCTCTACCACTATCCCCAGGTCCCACTaGCTCCCGATGAGGCTGCTGGCATTGGTGACATTAATGAATAGC +
Preference number: 5 (lower is better)
Translates to: KEGLPWSSTTIPRSH*LPMRLLALVTLMNS
Trigger: GCTATTCATTAATGTCACCAATGCCAGCAGCCTCATCGGGAGTCAGTGGGACCTGGGGATAGTGGTAGAGGACCAGGGCAGCCCCTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 90 bp ATCGGGGGAAGACAAGTTGTCTCGGTAATTGGTGGTGAGGGGCAATaGCAATCTCGCCATCCAGGCTGGGTCAGGCGGACTCAGCTTGTC +
Preference number: 5 (lower is better)
Translates to: IGGRQVVSVIGGEGQ*QSRHPGWVRRTQLV
Trigger: GACAAGCTGAGTCCGCCTGACCCAGCCTGGATGGCGAGATTGTCATTGCCCCTCACCACCAATTACCGAGACAACTTGTCTTCCCCCGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 90 bp CCACACCGAGATGCTGGATGCGAGCTGGGGTTGCCCTCTGTCCTCTaGTATCACCTGGAACTCAAAGCCTGCCATCTGTTCATAGTCCAG +
Preference number: 5 (lower is better)
Translates to: PHRDAGCELGLPSVL*YHLELKACHLFIVQ
Trigger: CTGGACTATGAACAGATGGCAGGCTTTGAGTTCCAGGTGATAGCAGAGGACAGAGGGCAACCCCAGCTCGCATCCAGCATCTCGGTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 90 bp TGGTCCACACTGGTGACAAACACGACCTTCAATGAAACTTGGGTCTaGAAGGAGGGGCTGCCCTGGTCCTCTACCACTATCCCCAGGTCC +
Preference number: 5 (lower is better)
Translates to: WSTLVTNTTFNETWV*KEGLPWSSTTIPRS
Trigger: GGACCTGGGGATAGTGGTAGAGGACCAGGGCAGCCCCTCCTTGCAGACCCAAGTTTCATTGAAGGTCGTGTTTGTCACCAGTGTGGACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp AAGGCATCTCCTGCCTTCCCACGCCTCTCCTCCACTCTTAGTTCTTaGGACAGTTTCCCTATCACCGTGCCAGACGGCACTTCCTCTGTC +
Preference number: 5 (lower is better)
Translates to: KASPAFPRLSSTLSS*DSFPITVPDGTSSV
Trigger: GACAGAGGAAGTGCCGTCTGGCACGGTGATAGGGAAACTGTCCCAAGAACTAAGAGTGGAGGAGAGGCGTGGGAAGGCAGGAGATGCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp CCTGCTGGATCCATGCCACTGGGATTCTCAATGGGCAACAGAAGGTaGCCCGTGGAGGCATTTACAAGCACCGAAAGGGTGGCTTTGCCT +
Preference number: 5 (lower is better)
Translates to: PAGSMPLGFSMGNRR*PVEAFTSTERVALP
Trigger: AGGCAAAGCCACCCTTTCGGTGCTTGTAAATGCCTCCACGGGCCACCTTCTGTTGCCCATTGAGAATCCCAGTGGCATGGATCCAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp TTGAAGGTGTCCTGCAGTACCTCCTGGCTCTCTGCCAGTTCTCCCTaGTTGCCTTGGTTACGCAGGGTCCTGTATAGGGTTGGTGTGAGG +
Preference number: 5 (lower is better)
Translates to: LKVSCSTSWLSASSP*LPWLRRVLYRVGVR
Trigger: CCTCACACCAACCCTATACAGGACCCTGCGTAACCAAGGCAACCAGGGAGAACTGGCAGAGAGCCAGGAGGTACTGCAGGACACCTTCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp GGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGACTGGGGTCCTTGGTCTaGGGCAAACACAGTGAGAGT +
Preference number: 5 (lower is better)
Translates to: GLGLGRCELLLPCACKSGLGSLV*GKHSES
Trigger: ACTCTCACTGTGTTTGCCCAAGACCAAGGACCCCAG...TCCGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 90 bp GAGTCCCAGCCTGCCTCCATCAGTGTCTCCTTGCTGGTATCCTTGTaGGATGGCCTGACTTCATCAGTCTCATTCTCGTGGGCCCTAAGC +
Preference number: 5 (lower is better)
Translates to: ESQPASISVSLLVSL*DGLTSSVSFSWALS
Trigger: GCTTAGGGCCCACGAGAATGAGACTGATGAAGTCAGGCCATCTCACAAGGATACCAGCAAGGAGACACTGATGGAGGCAGGCTGGGACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp CTTAGGTGGTCCACACTGGTGACAAACACGACCTTCAATGAAACTTaGGTCTGCAAGGAGGGGCTGCCCTGGTCCTCTACCACTATCCCC +
Preference number: 5 (lower is better)
Translates to: LRWSTLVTNTTFNET*VCKEGLPWSSTTIP
Trigger: GGGGATAGTGGTAGAGGACCAGGGCAGCCCCTCCTTGCAGACCCAAGTTTCATTGAAGGTCGTGTTTGTCACCAGTGTGGACCACCTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp CTGTCCTGCAGATGGACACGAACAGGGCTAAGAGCAATCCAAAGATaGCCAGCAGTACAGCCAGGCAGATCAAAGCCAGTGCTGGTGTGC +
Preference number: 5 (lower is better)
Translates to: LSCRWTRTGLRAIQR*PAVQPGRSKPVLVC
Trigger: GCACACCAGCACTGGCTTTGATCTGCCTGGCTGTACTGCTGGCCATCTTTGGATTGCTCTTAGCCCTGTTCGTGTCCATCTGCAGGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp CCGGGCTTGGCCAAGTATTTATTTCCTCGGTGGTTTGGTTTGGGCTaGAATTGGCCCTGGTGCAGCAAGGACAGCAGCTGGGAGATTTGC +
Preference number: 5 (lower is better)
Translates to: PGLAKYLFPRWFGLG*NWPWCSKDSSWEIC
Trigger: GCAAATCTCCCAGCTGCTGTCCTTGCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCACCGAGGAAATAAATACTTGGCCAAGCCCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp TATTCCCTGAGATCCTCAAGACCCGAGTGCCCTAACATTTCCCAGGGGACCCAGAGTTCCTGCTCGTCTTaGGGAAACTGTGGCTGGTGG +
Preference number: 5 (lower is better)
Translates to: YSLRSSRPECPNISQGTQSSCSS*GNCGWW
Trigger: CCACCAGCCACAGTTTCCCAAAGACGAGCAGGAACT...CTGGGTCCCCTGGGAAATGTTAGGGCACTCGGGTCTTGAGGATCTCAGGGAATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp AGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGGTTAGGACCCGTGTCTaGGTCAAGAGCTCTGTCCAA +
Preference number: 5 (lower is better)
Translates to: RDWDWADASSFYPVLVRAVRTRV*VKSSVQ
Trigger: TTGGACAGAGCTCTTGACCAAGACACGGGTCCTAAC...CGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp TATTCCCTGAGATCCTCAAGACCCGAGTGCCCTAACATTTCCCAGGGGACCCAGGAAGTGGCCCAGCTCTaGATTCAGCCAACAGTGGAC +
Preference number: 5 (lower is better)
Translates to: YSLRSSRPECPNISQGTQEVAQL*IQPTVD
Trigger: GTCCACTGTTGGCTGAATCAAGAGCTGGGCCACTTC...CTGGGTCCCCTGGGAAATGTTAGGGCACTCGGGTCTTGAGGATCTCAGGGAATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 90 bp GAACTCCGGGCTCATGAGCAGAATCCCTTAGGTGGTCCACACTGGTaGCAAACACGACCTTCAATGAAACTTGGGTCTGCAAGGAGGGGC +
Preference number: 5 (lower is better)
Translates to: ELRAHEQNPLGGPHW*QTRPSMKLGSARRG
Trigger: GCCCCTCCTTGCAGACCCAAGTTTCATTGAAGGTCGTGTTTGTCACCAGTGTGGACCACCTAAGGGATTCTGCTCATGAGCCCGGAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 90 bp GCATTCCTCTGCCTGGGATGGTTAAAGAGAAAGTTGAAGGTGTCCTaGAGTACCTCCTGGCTCTCTGCCAGTTCTCCCTGGTTGCCTTGG +
Preference number: 5 (lower is better)
Translates to: AFLCLGWLKRKLKVS*STSWLSASSPWLPW
Trigger: CCAAGGCAACCAGGGAGAACTGGCAGAGAGCCAGGAGGTACTGCAGGACACCTTCAACTTTCTCTTTAACCATCCCAGGCAGAGGAATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 90 bp GGTGGGGACTCAGGAAGGTTTAGGTTCTCCCGGGAGGCATTCCTCTaGCTGGGATGGTTAAAGAGAAAGTTGAAGGTGTCCTGCAGTACC +
Preference number: 5 (lower is better)
Translates to: GGDSGRFRFSREAFL*LGWLKRKLKVSCST
Trigger: GGTACTGCAGGACACCTTCAACTTTCTCTTTAACCATCCCAGGCAGAGGAATGCCTCCCGGGAGAACCTAAACCTTCCTGAGTCCCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp CTGGGATGGTTAAAGAGAAAGTTGAAGGTGTCCTGCAGTACCTCCTaGCTCTCTGCCAGTTCTCCCTGGTTGCCTTGGTTACGCAGGGTC +
Preference number: 5 (lower is better)
Translates to: LGWLKRKLKVSCSTS*LSASSPWLPWLRRV
Trigger: GACCCTGCGTAACCAAGGCAACCAGGGAGAACTGGCAGAGAGCCAGGAGGTACTGCAGGACACCTTCAACTTTCTCTTTAACCATCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp AAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTTGCTTGGTAGTCTCCCCATTGGGTCCTaGGTCGGGATCTGTAGCAGT +
Preference number: 5 (lower is better)
Translates to: KLSHADHYKVCPSQLLGSLPIGS*VGICSS
Trigger: ACTGCTACAGATCCCGACCAAGGACCCAATGGGGAG...ACTACCAAGCAACTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp CTGTTCCTCCTGAGGGCCACCTCTTTATGTGTTTTACTGCAAACTCCTAGGAGTTGTGGGGCCTCCTCCTaGTCTTGGTCTCCAGTCGCC +
Preference number: 5 (lower is better)
Translates to: LFLLRATSLCVLLQTPRSCGASS*SWSPVA
Trigger: GGCGACTGGAGACCAAGACAAGGAGGAGGCCCCACA...ACTCCTAGGAGTTTGCAGTAAAACACATAAAGAGGTGGCCCTCAGGAGGAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 90 bp AAGAGCTCTGTCCAAGGGGATTCGTGTGTGCAGAGAGGCACTCTCTaGGATTTCCAGTTCCTGCTCGTCTTTGGGAAACTGTGGCTGGTG +
Preference number: 5 (lower is better)
Translates to: KSSVQGDSCVQRGTL*DFQFLLVFGKLWLV
Trigger: CACCAGCCACAGTTTCCCAAAGACGAGCAGGAACTGGAAATCTCAGAGAGTGCCTCTCTGCACACACGAATCCCCTTGGACAGAGCTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 90 bp CCATTACTGCCCAAGTCAGCATCATGCGCTTTGAGCGTGATGAGGTaGAGAGAGGGTGGGTTATTTTCCCAAGTGGAGACCTCGTACCGG +
Preference number: 5 (lower is better)
Translates to: PLLPKSASCALSVMR*REGGLFSQVETSYR
Trigger: CCGGTACGAGGTCTCCACTTGGGAAAATAACCCACCCTCTCTTCACCTCATCACGCTCAAAGCGCATGATGCTGACTTGGGCAGTAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 90 bp TATTTATTTCCTCGGTGGTTTGGTTTGGGCTGGAATTGGCCCTGGTaGAGCAAGGACAGCAGCTGGGAGATTTGCTGGACAGGAGGAGAG +
Preference number: 5 (lower is better)
Translates to: YLFPRWFGLGWNWPW*SKDSSWEICWTGGE
Trigger: CTCTCCTCCTGTCCAGCAAATCTCCCAGCTGCTGTCCTTGCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCACCGAGGAAATAAATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp TGTCTAGCACCTGAATCTCCACATGAATTAGAGCAGACGCCCCTGTaGCAAGCACGTCAAATGACACCAGACAGGGATCTTCCTGCCGAC +
Preference number: 5 (lower is better)
Translates to: CLAPESPHELEQTPL*QARQMTPDRDLPAD
Trigger: GTCGGCAGGAAGATCCCTGTCTGGTGTCATTTGACGTGCTTGCCACAGGGGCGTCTGCTCTAATTCATGTGGAGATTCAGGTGCTAGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp GTGGTATACCAGTACCTGCTGGATCCATGCCACTGGGATTCTCAATaGGCAACAGAAGGTGGCCCGTGGAGGCATTTACAAGCACCGAAA +
Preference number: 5 (lower is better)
Translates to: VVYQYLLDPCHWDSQ*ATEGGPWRHLQAPK
Trigger: TTTCGGTGCTTGTAAATGCCTCCACGGGCCACCTTCTGTTGCCCATTGAGAATCCCAGTGGCATGGATCCAGCAGGTACTGGTATACCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp CTGTTGTCCGTAAAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGACAAGCTCTGCATGTTaGGTCTCATCAGGGCCCACA +
Preference number: 5 (lower is better)
Translates to: LLSVKLSHADHYKVCPSQTSSAC*VSSGPT
Trigger: TGTGGGCCCTGATGAGACCAAACATGCAGAGCTTGT...CTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTTTACGGACAACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp AAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTTGCTTGGTAGTCTGTCCAGTGTGGCATaGGTGAGCAGCATGTACGTG +
Preference number: 5 (lower is better)
Translates to: KLSHADHYKVCPSQLLGSLSSVA*VSSMYV
Trigger: CACGTACATGCTGCTCACCAATGCCACACTGGACAG...ACTACCAAGCAACTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp CTGTTCCTCCTGAGGGCCACCTCTTTATGTGTTTTACTGCAAACTCCTAGGAGTGGATGCGAGCTGGGGTaGCCCTCTGTCCTCTGCTAT +
Preference number: 5 (lower is better)
Translates to: LFLLRATSLCVLLQTPRSGCELG*PSVLCY
Trigger: ATAGCAGAGGACAGAGGGCAACCCCAGCTCGCATCC...ACTCCTAGGAGTTTGCAGTAAAACACATAAAGAGGTGGCCCTCAGGAGGAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 90 bp GCCCAGCTCTTGATTCAGCCAACAGTGGACGAGACCGTTGTTTCCTaGGTCCAAGTCATTCGCACTGACAAGGGCAATGAAGCTATCCCT +
Preference number: 5 (lower is better)
Translates to: AQLLIQPTVDETVVS*VQVIRTDKGNEAIP
Trigger: AGGGATAGCTTCATTGCCCTTGTCAGTGCGAATGACTTGGACTCAGGAAACAACGGTCTCGTCCACTGTTGGCTGAATCAAGAGCTGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 90 bp CGGTCCAACTGTCTTGCCGAATGTCTGGAAGGTTCTCGGTTCCTCTaGCGTTGTAGCATCGGGGGAAGACAAGTTGTCTCGGTAATTGGT +
Preference number: 5 (lower is better)
Translates to: RSNCLAECLEGSRFL*RCSIGGRQVVSVIG
Trigger: ACCAATTACCGAGACAACTTGTCTTCCCCCGATGCTACAACGTCAGAGGAACCGAGAACCTTCCAGACATTCGGCAAGACAGTTGGACCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS GCA 90 bp TGGCATCTATGCCAAAGGTGTTCATCACCTCTGGGGACACATGCTTaGCAAAGAAGAACTCTACCTCCCCATTGGGTCCTTGGTCGGGAT +
Preference number: 5 (lower is better)
Translates to: WHLCQRCSSPLGTHA*QRRTLPPHWVLGRD
Trigger: ATCCCGACCAAGGACCCAATGGGGAGGTAGAGTTCTTCTTTGGCAAGCATGTGTCCCCAGAGGTGATGAACACCTTTGGCATAGATGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 90 bp GTCTTGGCATCTATGCCAAAGGTGTTCATCACCTCTGGGGACACATaGTTGCCAAAGAAGAACTCTACCTCCCCATTGGGTCCTTGGTCG +
Preference number: 5 (lower is better)
Translates to: VLASMPKVFITSGDT*LPKKNSTSPLGPWS
Trigger: CGACCAAGGACCCAATGGGGAGGTAGAGTTCTTCTTTGGCAAGCATGTGTCCCCAGAGGTGATGAACACCTTTGGCATAGATGCCAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp AAGTATTTATTTCCTCGGTGGTTTGGTTTGGGCTGGAATTGGCCCTaGTGCAGCAAGGACAGCAGCTGGGAGATTTGCTGGACAGGAGGA +
Preference number: 5 (lower is better)
Translates to: KYLFPRWFGLGWNWP*CSKDSSWEICWTGG
Trigger: TCCTCCTGTCCAGCAAATCTCCCAGCTGCTGTCCTTGCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCACCGAGGAAATAAATACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp TTGGCCAAGTATTTATTTCCTCGGTGGTTTGGTTTGGGCTGGAATTaGCCCTGGTGCAGCAAGGACAGCAGCTGGGAGATTTGCTGGACA +
Preference number: 5 (lower is better)
Translates to: LAKYLFPRWFGLGWN*PWCSKDSSWEICWT
Trigger: TGTCCAGCAAATCTCCCAGCTGCTGTCCTTGCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCACCGAGGAAATAAATACTTGGCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp TTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCCTGCCGATAGAGGGAGACACTTTGCCATaGAAATTCCGCTGTCGTCTT +
Preference number: 5 (lower is better)
Translates to: FTHHPLGPQFTDPSLPIEGDTLP*KFRCRL
Trigger: AAGACGACAGCGGAATTTCAATGGCAAAGTGTCTCC...CTCTATCGGCAGGCTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp TTTCTAGTTCTAGTTCACACACCATCCTCTGGGGCCTCAATTCACAGACCCAAGCAGGTCAGGTTCTGCTaGACCACTAGGCTTGAGGCC +
Preference number: 5 (lower is better)
Translates to: FLVLVHTPSSGASIHRPKQVRFC*TTRLEA
Trigger: GGCCTCAAGCCTAGTGGTCAAGCAGAACCTGACCTG...CTTGGGTCTGTGAATTGAGGCCCCAGAGGATGGTGTGTGAACTAGAACTAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 90 bp TACGTGTTGCCGTTAGTCCTTTTCAGTCTGAAGTGGCCCAGCTCTTaGTTCAGCCAACAGTGGACGAGACCGTTGTTTCCTGAGTCCAAG +
Preference number: 5 (lower is better)
Translates to: YVLPLVLFSLKWPSS*FSQQWTRPLFPESK
Trigger: CTTGGACTCAGGAAACAACGGTCTCGTCCACTGTTGGCTGAATCAAGAGCTGGGCCACTTCAGACTGAAAAGGACTAACGGCAACACGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp CAAGTCAGCATCATGCGCTTTGAGCGTGATGAGGTGAAGAGAGGGTaGGTTATTTTCCCAAGTGGAGACCTCGTACCGGCTCTTCTCAAA +
Preference number: 5 (lower is better)
Translates to: QVSIMRFERDEVKRG*VIFPSGDLVPALLK
Trigger: TTTGAGAAGAGCCGGTACGAGGTCTCCACTTGGGAAAATAACCCACCCTCTCTTCACCTCATCACGCTCAAAGCGCATGATGCTGACTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp TTCGGAACTGAGTGTCTTCTGTCTGCAAGTCTTCATCTCAGGGACTTTTCCTCTTGGCCTGGGATGGAATaGGGACCCAAATCCCTTGCC +
Preference number: 5 (lower is better)
Translates to: FGTECLLSASLHLRDFSSWPGME*GPKSLA
Trigger: GGCAAGGGATTTGGGTCCCAATTCCATCCCAGGCCA...AGAGGAAAAGTCCCTGAGATGAAGACTTGCAGACAGAAGACACTCAGTTCCGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp AGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTACCCTGTGCTTGTAAGAGCGAGCATCATTCCCACTTaGAATGCTGTAGAAGAGTTC +
Preference number: 5 (lower is better)
Translates to: RDWDWADASSFYPVLVRASIIPT*NAVEEF
Trigger: GAACTCTTCTACAGCATTCAAAGTGGGAATGATGCT...CGCTCTTACAAGCACAGGGTAAAAGGAGCTCGCATCTGCCCAGTCCCAGTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 90 bp TTTCCAGTTCCTGCTCGTCTTTGGGAAACTGTGGCTGGTGGTCATTaGTGTCTAGCACCTGAATCTCCACATGAATTAGAGCAGACGCCC +
Preference number: 5 (lower is better)
Translates to: FPVPARLWETVAGGH*CLAPESPHELEQTP
Trigger: GGGCGTCTGCTCTAATTCATGTGGAGATTCAGGTGCTAGACATCAATGACCACCAGCCACAGTTTCCCAAAGACGAGCAGGAACTGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 90 bp CAGCTTCTCGACAGTTGTAGGCCCTATTATCCTTTCTCTCTGTCCTaGAGATGGACACGAACAGGGCTAAGAGCAATCCAAAGATGGCCA +
Preference number: 5 (lower is better)
Translates to: QLLDSCRPYYPFSLS*RWTRTGLRAIQRWP
Trigger: TGGCCATCTTTGGATTGCTCTTAGCCCTGTTCGTGTCCATCTGCAGGACAGAGAGAAAGGATAATAGGGCCTACAACTGTCGAGAAGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 90 bp GACACATGCTTGCCAAAGAAGAACTCTACCTCCCCATTGGGTCCTTaGTCGGGATCTGTAGCAGTCAGGTTTATGAGAAGAGTACCAGGA +
Preference number: 5 (lower is better)
Translates to: DTCLPKKNSTSPLGP*SGSVAVRFMRRVPG
Trigger: TCCTGGTACTCTTCTCATAAACCTGACTGCTACAGATCCCGACCAAGGACCCAATGGGGAGGTAGAGTTCTTCTTTGGCAAGCATGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp TCTGCCCTAGTCAGTTGCTTGGTAGTCCTGGACTCCTGCTTCCTCTGTGAGGAAATGAGGCTGCTGGCATaGGTGACATTAATGAATAGC +
Preference number: 5 (lower is better)
Translates to: SALVSCLVVLDSCFLCEEMRLLA*VTLMNS
Trigger: GCTATTCATTAATGTCACCAATGCCAGCAGCCTCAT...TTCCTCACAGAGGAAGCAGGAGTCCAGGACTACCAAGCAACTGACTAGGGCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp CTGTTGTCCGTAAAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTGGTTAAAGAGAAAGTaGAAGGTGTCCTGCAGTACC +
Preference number: 5 (lower is better)
Translates to: LLSVKLSHADHYKVCPSQWLKRK*KVSCST
Trigger: GGTACTGCAGGACACCTTCAACTTTCTCTTTAACCA...CTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTTTACGGACAACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp GTGTTTTACTGCAAACTCCTAGGAGTGAAACAAGCTGTCCCTGTTGTCCGTAAATGGTTTGGGCTGGAATaGGCCCTGGTGCAGCAAGGA +
Preference number: 5 (lower is better)
Translates to: VFYCKLLGVKQAVPVVRKWFGLE*ALVQQG
Trigger: TCCTTGCTGCACCAGGGCCAATTCCAGCCCAAACCA...TTTACGGACAACAGGGACAGCTTGTTTCACTCCTAGGAGTTTGCAGTAAAACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp GTTTTCCCTTTATTAGTAGGTCAGAAGGCATTGCCTGGCTCTTCCAAGAGCCCAATGATCTGGCCTGTCTaGGCATCTATGCCAAAGGTG +
Preference number: 5 (lower is better)
Translates to: VFPLLVGQKALPGSSKSPMIWPV*ASMPKV
Trigger: CACCTTTGGCATAGATGCCAAGACAGGCCAGATCAT...TGGGCTCTTGGAAGAGCCAGGCAATGCCTTCTGACCTACTAATAAAGGGAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp GTGTTTTACTGCAAACTCCTAGGAGTGAAACAAGCTGTCCCTGTTGTCCGTAAATTCTCCCTGGTTGCCTaGGTTACGCAGGGTCCTGTA +
Preference number: 5 (lower is better)
Translates to: VFYCKLLGVKQAVPVVRKFSLVA*VTQGPV
Trigger: TACAGGACCCTGCGTAACCAAGGCAACCAGGGAGAA...TTTACGGACAACAGGGACAGCTTGTTTCACTCCTAGGAGTTTGCAGTAAAACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp TTCGGAACTGAGTGTCTTCTGTCTGCAAGTCTTCATCTCAGGGACTTTTCCTCTTCTGGGGCATTATCATaGGCATCCAAGAGGCTAACC +
Preference number: 5 (lower is better)
Translates to: FGTECLLSASLHLRDFSSSGALS*ASKRLT
Trigger: GGTTAGCCTCTTGGATGCCAATGATAATGCCCCAGA...AGAGGAAAAGTCCCTGAGATGAAGACTTGCAGACAGAAGACACTCAGTTCCGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp CTGTTCCTCCTGAGGGCCACCTCTTTATGTGTTTTACTGCAAACTCCTAGGAGTCCTCTAGGAGACACTTaGCCATTGAAATTCCGCTGT +
Preference number: 5 (lower is better)
Translates to: LFLLRATSLCVLLQTPRSPLGDT*PLKFRC
Trigger: ACAGCGGAATTTCAATGGCAAAGTGTCTCCTAGAGG...ACTCCTAGGAGTTTGCAGTAAAACACATAAAGAGGTGGCCCTCAGGAGGAACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp TTCGGAACTGAGTGTCTTCTGTCTGCAAGTCTTCATCTCAGGGACTTTTCCTCTTATTTCCTCGGTGGTTaGGTTTGGGCTGGAATTGGC +
Preference number: 5 (lower is better)
Translates to: FGTECLLSASLHLRDFSSYFLGG*VWAGIG
Trigger: GCCAATTCCAGCCCAAACCAAACCACCGAGGAAATA...AGAGGAAAAGTCCCTGAGATGAAGACTTGCAGACAGAAGACACTCAGTTCCGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp AAGTCTTCATCTCAGGGACTTTTCCTCTTCCGTTCCTTTGTTTGCAATCCAGTGTTGGAGTCCAGGACATaGACCTTGACCACGCTGATT +
Preference number: 5 (lower is better)
Translates to: KSSSQGLFLFRSFVCNPVLESRT*TLTTLI
Trigger: AATCAGCGTGGTCAAGGTCAATGTCCTGGACTCCAA...CACTGGATTGCAAACAAAGGAACGGAAGAGGAAAAGTCCCTGAGATGAAGACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp CTGTTGTCCGTAAAGCTCAGCCACGCAGACCATTACAAGGTCTGCCCTAGTCAGTTGACATCCAGAACTTaGATAAGAACTTTGCAATGG +
Preference number: 5 (lower is better)
Translates to: LLSVKLSHADHYKVCPSQLTSRT*IRTLQW
Trigger: CCATTGCAAAGTTCTTATCAAAGTTCTGGATGTCAA...CTGACTAGGGCAGACCTTGTAATGGTCTGCGTGGCTGAGCTTTACGGACAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 90 bp TGCTATCACCTGGAACTCAAAGCCTGCCATCTGTTCATAGTCCAGTaGCCTCTGAGCAGTGACTTCTCCTGTTTCAAAGTCAATAATGAC +
Preference number: 5 (lower is better)
Translates to: CYHLELKACHLFIVQ*PLSSDFSCFKVNND
Trigger: GTCATTATTGACTTTGAAACAGGAGAAGTCACTGCTCAGAGGTCACTGGACTATGAACAGATGGCAGGCTTTGAGTTCCAGGTGATAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp TTCGGAACTGAGTGTCTTCTGTCTGCAAGTCTTCATCTCAGGGACTTTTCCTCTCACTTCCTCTGTCACTaGGAATTTCACCATGACAGT +
Preference number: 5 (lower is better)
Translates to: FGTECLLSASLHLRDFSSHFLCH*EFHHDS
Trigger: ACTGTCATGGTGAAATTCCAAGTGACAGAGGAAGTG...AGAGGAAAAGTCCCTGAGATGAAGACTTGCAGACAGAAGACACTCAGTTCCGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS-3UTR CAA 90 bp GTGTTTTACTGCAAACTCCTAGGAGTGAAACAAGCTGTCCCTGTTGTCCGTAAAGCAAACACTGGACTATaGTCATTGGAGTCCAGGACA +
Preference number: 5 (lower is better)
Translates to: VFYCKLLGVKQAVPVVRKANTGL*SLESRT
Trigger: TGTCCTGGACTCCAATGACAATAGTCCAGTGTTTGC...TTTACGGACAACAGGGACAGCTTGTTTCACTCCTAGGAGTTTGCAGTAAAACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp GACGCTGGTGGGCTCTGTGGGGCCTCCTCCTTGTCTTaGTCTCCAGTCGCCCTCGCTATGGGGCTACCAGGC +
Preference number: 6 (lower is better)
Translates to: DAGGLCGASSLS*SPVALAMGLPG
Trigger: GCCTGGTAGCCCCATAGCGAGGGCGACTGGAGACCAAGACAAGGAGGAGGCCCCACAGAGCCCACCAGCGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp CTCCGAGACGAAAGTGCTGGCCAGGCGCGTGCCTGTTaGGCTCAGCTCGGGTCCCGGTCCAACTGTCTTGCC +
Preference number: 6 (lower is better)
Translates to: LRDESAGQARAC*AQLGSRSNCLA
Trigger: GGCAAGACAGTTGGACCGGGACCCGAGCTGAGCCCAACAGGCACGCGCCTGGCCAGCACTTTCGTCTCGGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS CAA 72 bp GGACGCTGGTGGGCTCTGTGGGGCCTCCTCCTTGTCTaGGTCTCCAGTCGCCCTCGCTATGGGGCTACCAGG +
Preference number: 6 (lower is better)
Translates to: GRWWALWGLLLV*VSSRPRYGATR
Trigger: CCTGGTAGCCCCATAGCGAGGGCGACTGGAGACCAAGACAAGGAGGAGGCCCCACAGAGCCCACCAGCGTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 72 bp AGCTCATCTCCGAGACGAAAGTGCTGGCCAGGCGCGTaGCTGTTGGGCTCAGCTCGGGTCCCGGTCCAACTG +
Preference number: 6 (lower is better)
Translates to: SSSPRRKCWPGA*LLGSARVPVQL
Trigger: CAGTTGGACCGGGACCCGAGCTGAGCCCAACAGGCACGCGCCTGGCCAGCACTTTCGTCTCGGAGATGAGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS CCA 72 bp ACCACTAGGCTTGAGGCCTACAAGGCCCTCTGTGTCTaGGATGGTACCCCTGCTGCTGCCGCCGGGCTTGGC +
Preference number: 6 (lower is better)
Translates to: TTRLEAYKALCV*DGTPAAAAGLG
Trigger: GCCAAGCCCGGCGGCAGCAGCAGGGGTACCATCCCAGACACAGAGGGCCTTGTAGGCCTCAAGCCTAGTGGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 72 bp TCTCCGAGACGAAAGTGCTGGCCAGGCGCGTGCCTGTaGGGCTCAGCTCGGGTCCCGGTCCAACTGTCTTGC +
Preference number: 6 (lower is better)
Translates to: SPRRKCWPGACL*GSARVPVQLSC
Trigger: GCAAGACAGTTGGACCGGGACCCGAGCTGAGCCCAACAGGCACGCGCCTGGCCAGCACTTTCGTCTCGGAGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS CAA 90 bp GAGAGCTCATCTCCGAGACGAAAGTGCTGGCCAGGCGCGTGCCTGTaGGGCTCAGCTCGGGTCCCGGTCCAACTGTCTTGCCGAATGTCT +
Preference number: 6 (lower is better)
Translates to: ESSSPRRKCWPGACL*GSARVPVQLSCRMS
Trigger: AGACATTCGGCAAGACAGTTGGACCGGGACCCGAGCTGAGCCCAACAGGCACGCGCCTGGCCAGCACTTTCGTCTCGGAGATGAGCTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS TCA 72 bp GGGCTCGGGGGCCCTTCTTCCAGGTCAGGTTCTGCTTaGCCACTAGGCTTGAGGCCTACAAGGCCCTCTGTG +
Preference number: 6 (lower is better)
Translates to: GLGGPSSRSGSA*PLGLRPTRPSV
Trigger: CACAGAGGGCCTTGTAGGCCTCAAGCCTAGTGGTCAAGCAGAACCTGACCTGGAAGAAGGGCCCCCGAGCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp TTTCCAGCAGAGAGCTCATCTCCGAGACGAAAGTGCTaGCCAGGCGCGTGCCTGTTGGGCTCAGCTCGGGTC +
Preference number: 6 (lower is better)
Translates to: FPAESSSPRRKC*PGACLLGSARV
Trigger: GACCCGAGCTGAGCCCAACAGGCACGCGCCTGGCCAGCACTTTCGTCTCGGAGATGAGCTCTCTGCTGGAAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS CCA 72 bp CGAGAGCCTCCGCAAAGCCGCGGACGCAGCTTCCACTaGTACCGTGTGCTGCCCCAACAACATTTCCAGCAG +
Preference number: 6 (lower is better)
Translates to: REPPQSRGRSFH*YRVLPQQHFQQ
Trigger: CTGCTGGAAATGTTGTTGGGGCAGCACACGGTACCAGTGGAAGCTGCGTCCGCGGCTTTGCGGAGGCTCTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS GCA 72 bp ACATTTCCAGCAGAGAGCTCATCTCCGAGACGAAAGTaGTGGCCAGGCGCGTGCCTGTTGGGCTCAGCTCGG +
Preference number: 6 (lower is better)
Translates to: TFPAESSSPRRK*WPGACLLGSAR
Trigger: CCGAGCTGAGCCCAACAGGCACGCGCCTGGCCAGCACTTTCGTCTCGGAGATGAGCTCTCTGCTGGAAATGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS CCA 72 bp GGCTGGAATTGGCCCTGGTGCAGCAAGGACAGCAGCTaGGAGATTTGCTGGACAGGAGGAGAGTCCCCAGCA +
Preference number: 6 (lower is better)
Translates to: GWNWPWCSKDSS*EICWTGGESPA
Trigger: TGCTGGGGACTCTCCTCCTGTCCAGCAAATCTCCCAGCTGCTGTCCTTGCTGCACCAGGGCCAATTCCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 90 bp AGGCGCGTGCCTGTTGGGCTCAGCTCGGGTCCCGGTCCAACTGTCTaGCCGAATGTCTGGAAGGTTCTCGGTTCCTCTGACGTTGTAGCA +
Preference number: 6 (lower is better)
Translates to: RRVPVGLSSGPGPTV*PNVWKVLGSSDVVA
Trigger: TGCTACAACGTCAGAGGAACCGAGAACCTTCCAGACATTCGGCAAGACAGTTGGACCGGGACCCGAGCTGAGCCCAACAGGCACGCGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS TCA 72 bp GACATAGCTTCTCCCGATCCAGCCGGCTGGAAGTGCTaGGCAGGCCGTCCTCAGAGTTCATCTGAACCGGCA +
Preference number: 6 (lower is better)
Translates to: DIASPDPAGWKC*AGRPQSSSEPA
Trigger: TGCCGGTTCAGATGAACTCTGAGGACGGCCTGCTCAGCACTTCCAGCCGGCTGGATCGGGAGAAGCTATGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 72 bp GAGCAGGCCGTCCTCAGAGTTCATCTGAACCGGCAGTaGCTGAGGCAGCTGCAGAATCTGGAAGGCATCTCC +
Preference number: 6 (lower is better)
Translates to: EQAVLRVHLNRQ*LRQLQNLEGIS
Trigger: GGAGATGCCTTCCAGATTCTGCAGCTGCCTCAGGCACTGCCGGTTCAGATGAACTCTGAGGACGGCCTGCTC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 72 bp GGCATCCAAGAGGCTAACCCACACCGAGATGCTGGATaGGAGCTGGGGTTGCCCTCTGTCCTCTGCTATCAC +
Preference number: 6 (lower is better)
Translates to: GIQEANPHRDAG*ELGLPSVLCYH
Trigger: GTGATAGCAGAGGACAGAGGGCAACCCCAGCTCGCATCCAGCATCTCGGTGTGGGTTAGCCTCTTGGATGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 72 bp GGCCTACAAGGCCCTCTGTGTCTGGGATGGTACCCCTaGTGCTGCCGCCGGGCTTGGCCAAGTATTTATTTC +
Preference number: 6 (lower is better)
Translates to: GLQGPLCLGWYP*CCRRAWPSIYF
Trigger: GAAATAAATACTTGGCCAAGCCCGGCGGCAGCAGCAGGGGTACCATCCCAGACACAGAGGGCCTTGTAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 72 bp CTGTTGGGCTCAGCTCGGGTCCCGGTCCAACTGTCTTaGCGAATGTCTGGAAGGTTCTCGGTTCCTCTGACG +
Preference number: 6 (lower is better)
Translates to: LLGSARVPVQLS*RMSGRFSVPLT
Trigger: CGTCAGAGGAACCGAGAACCTTCCAGACATTCGGCAAGACAGTTGGACCGGGACCCGAGCTGAGCCCAACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS GCA 72 bp CGCAAAGCCGCGGACGCAGCTTCCACTGGTACCGTGTaGTGCCCCAACAACATTTCCAGCAGAGAGCTCATC +
Preference number: 6 (lower is better)
Translates to: RKAADAASTGTV*CPNNISSRELI
Trigger: GATGAGCTCTCTGCTGGAAATGTTGTTGGGGCAGCACACGGTACCAGTGGAAGCTGCGTCCGCGGCTTTGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS CCA 72 bp CCTCCTCCTTGTCTTGGTCTCCAGTCGCCCTCGCTATaGGGCTACCAGGCACCTTCAGAGGCCTTAAGAGTG +
Preference number: 6 (lower is better)
Translates to: PPPCLGLQSPSL*GYQAPSEALRV
Trigger: CACTCTTAAGGCCTCTGAAGGTGCCTGGTAGCCCCATAGCGAGGGCGACTGGAGACCAAGACAAGGAGGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 72 bp CCTGTTGGGCTCAGCTCGGGTCCCGGTCCAACTGTCTaGCCGAATGTCTGGAAGGTTCTCGGTTCCTCTGAC +
Preference number: 6 (lower is better)
Translates to: PVGLSSGPGPTV*PNVWKVLGSSD
Trigger: GTCAGAGGAACCGAGAACCTTCCAGACATTCGGCAAGACAGTTGGACCGGGACCCGAGCTGAGCCCAACAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS CAA 90 bp GGCAATGACAATCTCGCCATCCAGGCTGGGTCAGGCGGACTCAGCTaGTCCAGGGCTAGACCTGTATTAGGGTCCAACAGGCTCGACAGC +
Preference number: 6 (lower is better)
Translates to: GNDNLAIQAGSGGLS*SRARPVLGSNRLDS
Trigger: GCTGTCGAGCCTGTTGGACCCTAATACAGGTCTAGCCCTGGACAAGCTGAGTCCGCCTGACCCAGCCTGGATGGCGAGATTGTCATTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 90 bp AAGGTGTCCTGCAGTACCTCCTGGCTCTCTGCCAGTTCTCCCTGGTaGCCTTGGTTACGCAGGGTCCTGTATAGGGTTGGTGTGAGGTGG +
Preference number: 6 (lower is better)
Translates to: KVSCSTSWLSASSPW*PWLRRVLYRVGVRW
Trigger: CCACCTCACACCAACCCTATACAGGACCCTGCGTAACCAAGGCAACCAGGGAGAACTGGCAGAGAGCCAGGAGGTACTGCAGGACACCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 90 bp TGCTGCTGCCGCCGGGCTTGGCCAAGTATTTATTTCCTCGGTGGTTaGGTTTGGGCTGGAATTGGCCCTGGTGCAGCAAGGACAGCAGCT +
Preference number: 6 (lower is better)
Translates to: CCCRRAWPSIYFLGG*VWAGIGPGAARTAA
Trigger: AGCTGCTGTCCTTGCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCACCGAGGAAATAAATACTTGGCCAAGCCCGGCGGCAGCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 90 bp AGGCCCTCTGTGTCTGGGATGGTACCCCTGCTGCTGCCGCCGGGCTaGGCCAAGTATTTATTTCCTCGGTGGTTTGGTTTGGGCTGGAAT +
Preference number: 6 (lower is better)
Translates to: RPSVSGMVPLLLPPG*AKYLFPRWFGLGWN
Trigger: ATTCCAGCCCAAACCAAACCACCGAGGAAATAAATACTTGGCCAAGCCCGGCGGCAGCAGCAGGGGTACCATCCCAGACACAGAGGGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 72 bp CTGCCCTGGTCCTCTACCACTATCCCCAGGTCCCACTaGCTCCCGATGAGGCTGCTGGCATTGGTGACATTA +
Preference number: 6 (lower is better)
Translates to: LPWSSTTIPRSH*LPMRLLALVTL
Trigger: TAATGTCACCAATGCCAGCAGCCTCATCGGGAGTCAGTGGGACCTGGGGATAGTGGTAGAGGACCAGGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 72 bp CGACCTTCAATGAAACTTGGGTCTGCAAGGAGGGGCTaGCCTGGTCCTCTACCACTATCCCCAGGTCCCACT +
Preference number: 6 (lower is better)
Translates to: RPSMKLGSARRG*PGPLPLSPGPT
Trigger: AGTGGGACCTGGGGATAGTGGTAGAGGACCAGGGCAGCCCCTCCTTGCAGACCCAAGTTTCATTGAAGGTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 72 bp GCAGTACCTCCTGGCTCTCTGCCAGTTCTCCCTGGTTaGCTTGGTTACGCAGGGTCCTGTATAGGGTTGGTG +
Preference number: 6 (lower is better)
Translates to: AVPPGSLPVLPG*LGYAGSCIGLV
Trigger: CACCAACCCTATACAGGACCCTGCGTAACCAAGGCAACCAGGGAGAACTGGCAGAGAGCCAGGAGGTACTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 72 bp AAAGCCGCGGACGCAGCTTCCACTGGTACCGTGTGCTaGCCCAACAACATTTCCAGCAGAGAGCTCATCTCC +
Preference number: 6 (lower is better)
Translates to: KAADAASTGTVC*PNNISSRELIS
Trigger: GGAGATGAGCTCTCTGCTGGAAATGTTGTTGGGGCAGCACACGGTACCAGTGGAAGCTGCGTCCGCGGCTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS CCA 72 bp CCTGCCTTCCCACGCCTCTCCTCCACTCTTAGTTCTTaGGACAGTTTCCCTATCACCGTGCCAGACGGCACT +
Preference number: 6 (lower is better)
Translates to: PAFPRLSSTLSS*DSFPITVPDGT
Trigger: AGTGCCGTCTGGCACGGTGATAGGGAAACTGTCCCAAGAACTAAGAGTGGAGGAGAGGCGTGGGAAGGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp CTATCCCTGGGAAGATCTTCTGACACCAGCGACGTCTaGGAGGCCCACGTGATGAGGATGCTTGGGGCATTG +
Preference number: 6 (lower is better)
Translates to: LSLGRSSDTSDV*EAHVMRMLGAL
Trigger: CAATGCCCCAAGCATCCTCATCACGTGGGCCTCCCAGACGTCGCTGGTGTCAGAAGATCTTCCCAGGGATAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp ACCTCCTGGCTCTCTGCCAGTTCTCCCTGGTTGCCTTaGTTACGCAGGGTCCTGTATAGGGTTGGTGTGAGG +
Preference number: 6 (lower is better)
Translates to: TSWLSASSPWLP*LRRVLYRVGVR
Trigger: CCTCACACCAACCCTATACAGGACCCTGCGTAACCAAGGCAACCAGGGAGAACTGGCAGAGAGCCAGGAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp GGGCTACCAGGCACCTTCAGAGGCCTTAAGAGTGGTTaGCGTACAGCAGGTGGGGACTCAGGAAGGTTTAGG +
Preference number: 6 (lower is better)
Translates to: GLPGTFRGLKSG*RTAGGDSGRFR
Trigger: CCTAAACCTTCCTGAGTCCCCACCTGCTGTACGCCAACCACTCTTAAGGCCTCTGAAGGTGCCTGGTAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp CTGCCGCCGGGCTTGGCCAAGTATTTATTTCCTCGGTaGTTTGGTTTGGGCTGGAATTGGCCCTGGTGCAGC +
Preference number: 6 (lower is better)
Translates to: LPPGLAKYLFPR*FGLGWNWPWCS
Trigger: GCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCACCGAGGAAATAAATACTTGGCCAAGCCCGGCGGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 72 bp AATCTCGCCATCCAGGCTGGGTCAGGCGGACTCAGCTaGTCCAGGGCTAGACCTGTATTAGGGTCCAACAGG +
Preference number: 6 (lower is better)
Translates to: NLAIQAGSGGLS*SRARPVLGSNR
Trigger: CCTGTTGGACCCTAATACAGGTCTAGCCCTGGACAAGCTGAGTCCGCCTGACCCAGCCTGGATGGCGAGATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 90 bp ATCCAAGAGGCTAACCCACACCGAGATGCTGGATGCGAGCTGGGGTaGCCCTCTGTCCTCTGCTATCACCTGGAACTCAAAGCCTGCCAT +
Preference number: 6 (lower is better)
Translates to: IQEANPHRDAGCELG*PSVLCYHLELKACH
Trigger: ATGGCAGGCTTTGAGTTCCAGGTGATAGCAGAGGACAGAGGGCAACCCCAGCTCGCATCCAGCATCTCGGTGTGGGTTAGCCTCTTGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 72 bp GCAAGCACGTCAAATGACACCAGACAGGGATCTTCCTaGCGACATAGCTTCTCCCGATCCAGCCGGCTGGAA +
Preference number: 6 (lower is better)
Translates to: ASTSNDTRQGSS*RHSFSRSSRLE
Trigger: TTCCAGCCGGCTGGATCGGGAGAAGCTATGTCGGCAGGAAGATCCCTGTCTGGTGTCATTTGACGTGCTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 72 bp GATGCTGGATGCGAGCTGGGGTTGCCCTCTGTCCTCTaGTATCACCTGGAACTCAAAGCCTGCCATCTGTTC +
Preference number: 6 (lower is better)
Translates to: DAGCELGLPSVL*YHLELKACHLF
Trigger: GAACAGATGGCAGGCTTTGAGTTCCAGGTGATAGCAGAGGACAGAGGGCAACCCCAGCTCGCATCCAGCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp TCCTGCAGTACCTCCTGGCTCTCTGCCAGTTCTCCCTaGTTGCCTTGGTTACGCAGGGTCCTGTATAGGGTT +
Preference number: 6 (lower is better)
Translates to: SCSTSWLSASSP*LPWLRRVLYRV
Trigger: AACCCTATACAGGACCCTGCGTAACCAAGGCAACCAGGGAGAACTGGCAGAGAGCCAGGAGGTACTGCAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp TTTCCTCGGTGGTTTGGTTTGGGCTGGAATTGGCCCTaGTGCAGCAAGGACAGCAGCTGGGAGATTTGCTGG +
Preference number: 6 (lower is better)
Translates to: FPRWFGLGWNWP*CSKDSSWEICW
Trigger: CCAGCAAATCTCCCAGCTGCTGTCCTTGCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCACCGAGGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp TGTCTGGGATGGTACCCCTGCTGCTGCCGCCGGGCTTaGCCAAGTATTTATTTCCTCGGTGGTTTGGTTTGG +
Preference number: 6 (lower is better)
Translates to: CLGWYPCCCRRA*PSIYFLGGLVW
Trigger: CCAAACCAAACCACCGAGGAAATAAATACTTGGCCAAGCCCGGCGGCAGCAGCAGGGGTACCATCCCAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 72 bp TGCAGTACCTCCTGGCTCTCTGCCAGTTCTCCCTGGTaGCCTTGGTTACGCAGGGTCCTGTATAGGGTTGGT +
Preference number: 6 (lower is better)
Translates to: CSTSWLSASSPW*PWLRRVLYRVG
Trigger: ACCAACCCTATACAGGACCCTGCGTAACCAAGGCAACCAGGGAGAACTGGCAGAGAGCCAGGAGGTACTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 72 bp CGCCGGGCTTGGCCAAGTATTTATTTCCTCGGTGGTTaGGTTTGGGCTGGAATTGGCCCTGGTGCAGCAAGG +
Preference number: 6 (lower is better)
Translates to: RRAWPSIYFLGG*VWAGIGPGAAR
Trigger: CCTTGCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCACCGAGGAAATAAATACTTGGCCAAGCCCGGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 72 bp GTGTCTGGGATGGTACCCCTGCTGCTGCCGCCGGGCTaGGCCAAGTATTTATTTCCTCGGTGGTTTGGTTTG +
Preference number: 6 (lower is better)
Translates to: VSGMVPLLLPPG*AKYLFPRWFGL
Trigger: CAAACCAAACCACCGAGGAAATAAATACTTGGCCAAGCCCGGCGGCAGCAGCAGGGGTACCATCCCAGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 90 bp TTCTCCCGGGAGGCATTCCTCTGCCTGGGATGGTTAAAGAGAAAGTaGAAGGTGTCCTGCAGTACCTCCTGGCTCTCTGCCAGTTCTCCC +
Preference number: 6 (lower is better)
Translates to: FSREAFLCLGWLKRK*KVSCSTSWLSASSP
Trigger: GGGAGAACTGGCAGAGAGCCAGGAGGTACTGCAGGACACCTTCAACTTTCTCTTTAACCATCCCAGGCAGAGGAATGCCTCCCGGGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 72 bp AAAGCCAGTGCTGGTGTGCTCAGAACTCCGGGCTCATaGGCAGAATCCCTTAGGTGGTCCACACTGGTGACA +
Preference number: 6 (lower is better)
Translates to: KASAGVLRTPGS*AESLRWSTLVT
Trigger: TGTCACCAGTGTGGACCACCTAAGGGATTCTGCTCATGAGCCCGGAGTTCTGAGCACACCAGCACTGGCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 72 bp AGACAAGTTGTCTCGGTAATTGGTGGTGAGGGGCAATaGCAATCTCGCCATCCAGGCTGGGTCAGGCGGACT +
Preference number: 6 (lower is better)
Translates to: RQVVSVIGGEGQ*QSRHPGWVRRT
Trigger: AGTCCGCCTGACCCAGCCTGGATGGCGAGATTGTCATTGCCCCTCACCACCAATTACCGAGACAACTTGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 72 bp CATCGGGGGAAGACAAGTTGTCTCGGTAATTGGTGGTaGGGGGCAATGACAATCTCGCCATCCAGGCTGGGT +
Preference number: 6 (lower is better)
Translates to: HRGKTSCLGNWW*GAMTISPSRLG
Trigger: ACCCAGCCTGGATGGCGAGATTGTCATTGCCCCTCACCACCAATTACCGAGACAACTTGTCTTCCCCCGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp TCCATGCCACTGGGATTCTCAATGGGCAACAGAAGGTaGCCCGTGGAGGCATTTACAAGCACCGAAAGGGTG +
Preference number: 6 (lower is better)
Translates to: SMPLGFSMGNRR*PVEAFTSTERV
Trigger: CACCCTTTCGGTGCTTGTAAATGCCTCCACGGGCCACCTTCTGTTGCCCATTGAGAATCCCAGTGGCATGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp TTGGTGGTATACCAGTACCTGCTGGATCCATGCCACTaGGATTCTCAATGGGCAACAGAAGGTGGCCCGTGG +
Preference number: 6 (lower is better)
Translates to: LVVYQYLLDPCH*DSQWATEGGPW
Trigger: CCACGGGCCACCTTCTGTTGCCCATTGAGAATCCCAGTGGCATGGATCCAGCAGGTACTGGTATACCACCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp TCCACACTGGTGACAAACACGACCTTCAATGAAACTTaGGTCTGCAAGGAGGGGCTGCCCTGGTCCTCTACC +
Preference number: 6 (lower is better)
Translates to: STLVTNTTFNET*VCKEGLPWSST
Trigger: GGTAGAGGACCAGGGCAGCCCCTCCTTGCAGACCCAAGTTTCATTGAAGGTCGTGTTTGTCACCAGTGTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp GCCGGGCTTGGCCAAGTATTTATTTCCTCGGTGGTTTaGTTTGGGCTGGAATTGGCCCTGGTGCAGCAAGGA +
Preference number: 6 (lower is better)
Translates to: AGLGQVFISSVV*FGLELALVQQG
Trigger: TCCTTGCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCACCGAGGAAATAAATACTTGGCCAAGCCCGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 72 bp CCCTATCACCGTGCCAGACGGCACTTCCTCTGTCACTaGGAATTTCACCATGACAGTGGCCACCTCCTGACA +
Preference number: 6 (lower is better)
Translates to: PYHRARRHFLCH*EFHHDSGHLLT
Trigger: TGTCAGGAGGTGGCCACTGTCATGGTGAAATTCCAAGTGACAGAGGAAGTGCCGTCTGGCACGGTGATAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 72 bp AATGTGTTTCTGGGGCCTCTTGGGCTGGTGGCGGTATaGCGACTCAGCTTCTCGACAGTTGTAGGCCCTATT +
Preference number: 6 (lower is better)
Translates to: NVFLGPLGLVAV*RLSFSTVVGPI
Trigger: AATAGGGCCTACAACTGTCGAGAAGCTGAGTCGTCATACCGCCACCAGCCCAAGAGGCCCCAGAAACACATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 72 bp TGCCTGGGATGGTTAAAGAGAAAGTTGAAGGTGTCCTaGAGTACCTCCTGGCTCTCTGCCAGTTCTCCCTGG +
Preference number: 6 (lower is better)
Translates to: CLGWLKRKLKVS*STSWLSASSPW
Trigger: CCAGGGAGAACTGGCAGAGAGCCAGGAGGTACTGCAGGACACCTTCAACTTTCTCTTTAACCATCCCAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp CAGTACCTGCTGGATCCATGCCACTGGGATTCTCAATaGGCAACAGAAGGTGGCCCGTGGAGGCATTTACAA +
Preference number: 6 (lower is better)
Translates to: QYLLDPCHWDSQ*ATEGGPWRHLQ
Trigger: TTGTAAATGCCTCCACGGGCCACCTTCTGTTGCCCATTGAGAATCCCAGTGGCATGGATCCAGCAGGTACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp GCCAAGTATTTATTTCCTCGGTGGTTTGGTTTGGGCTaGAATTGGCCCTGGTGCAGCAAGGACAGCAGCTGG +
Preference number: 6 (lower is better)
Translates to: AKYLFPRWFGLG*NWPWCSKDSSW
Trigger: CCAGCTGCTGTCCTTGCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCACCGAGGAAATAAATACTTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 72 bp CTGTCCAGTGTGGCATTGGTGAGCAGCATGTACGTGTaGCCGTTAGTCCTTTTCAGTCTGAAGTGGCCCAGC +
Preference number: 6 (lower is better)
Translates to: LSSVALVSSMYV*PLVLFSLKWPS
Trigger: GCTGGGCCACTTCAGACTGAAAAGGACTAACGGCAACACGTACATGCTGCTCACCAATGCCACACTGGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 72 bp GAGGCATTCCTCTGCCTGGGATGGTTAAAGAGAAAGTaGAAGGTGTCCTGCAGTACCTCCTGGCTCTCTGCC +
Preference number: 6 (lower is better)
Translates to: EAFLCLGWLKRK*KVSCSTSWLSA
Trigger: GGCAGAGAGCCAGGAGGTACTGCAGGACACCTTCAACTTTCTCTTTAACCATCCCAGGCAGAGGAATGCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 90 bp CTTGGCCAAGTATTTATTTCCTCGGTGGTTTGGTTTGGGCTGGAATaGGCCCTGGTGCAGCAAGGACAGCAGCTGGGAGATTTGCTGGAC +
Preference number: 6 (lower is better)
Translates to: LGQVFISSVVWFGLE*ALVQQGQQLGDLLD
Trigger: GTCCAGCAAATCTCCCAGCTGCTGTCCTTGCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCACCGAGGAAATAAATACTTGGCCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 72 bp GTCCAAGGGGATTCGTGTGTGCAGAGAGGCACTCTCTaGGATTTCCAGTTCCTGCTCGTCTTTGGGAAACTG +
Preference number: 6 (lower is better)
Translates to: VQGDSCVQRGTL*DFQFLLVFGKL
Trigger: CAGTTTCCCAAAGACGAGCAGGAACTGGAAATCTCAGAGAGTGCCTCTCTGCACACACGAATCCCCTTGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 72 bp CCCAAGTCAGCATCATGCGCTTTGAGCGTGATGAGGTaGAGAGAGGGTGGGTTATTTTCCCAAGTGGAGACC +
Preference number: 6 (lower is better)
Translates to: PKSASCALSVMR*REGGLFSQVET
Trigger: GGTCTCCACTTGGGAAAATAACCCACCCTCTCTTCACCTCATCACGCTCAAAGCGCATGATGCTGACTTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 72 bp CCTGCCTCCATCAGTGTCTCCTTGCTGGTATCCTTGTaGGATGGCCTGACTTCATCAGTCTCATTCTCGTGG +
Preference number: 6 (lower is better)
Translates to: PASISVSLLVSL*DGLTSSVSFSW
Trigger: CCACGAGAATGAGACTGATGAAGTCAGGCCATCTCACAAGGATACCAGCAAGGAGACACTGATGGAGGCAGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 72 bp TGTCTTGCCGAATGTCTGGAAGGTTCTCGGTTCCTCTaGCGTTGTAGCATCGGGGGAAGACAAGTTGTCTCG +
Preference number: 6 (lower is better)
Translates to: CLAECLEGSRFL*RCSIGGRQVVS
Trigger: CGAGACAACTTGTCTTCCCCCGATGCTACAACGTCAGAGGAACCGAGAACCTTCCAGACATTCGGCAAGACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025311.8
ENSMUST00000194012.2
CDS CCA 72 bp ATCATGCGCTTTGAGCGTGATGAGGTGAAGAGAGGGTaGGTTATTTTCCCAAGTGGAGACCTCGTACCGGCT +
Preference number: 6 (lower is better)
Translates to: IMRFERDEVKRG*VIFPSGDLVPA
Trigger: AGCCGGTACGAGGTCTCCACTTGGGAAAATAACCCACCCTCTCTTCACCTCATCACGCTCAAAGCGCATGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp CTCCATCAGTGTCTCCTTGCTGGTATCCTTGTGAGATaGCCTGACTTCATCAGTCTCATTCTCGTGGGCCCT +
Preference number: 6 (lower is better)
Translates to: LHQCLLAGILVR*PDFISLILVGP
Trigger: AGGGCCCACGAGAATGAGACTGATGAAGTCAGGCCATCTCACAAGGATACCAGCAAGGAGACACTGATGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 72 bp CTGTCCAACTCCTTCACCACCACAAGCTCTGCATGTTaGGTCTCATCAGGGCCCACAATAACATCCAGGGCA +
Preference number: 6 (lower is better)
Translates to: LSNSFTTTSSAC*VSSGPTITSRA
Trigger: TGCCCTGGATGTTATTGTGGGCCCTGATGAGACCAAACATGCAGAGCTTGTGGTGGTGAAGGAGTTGGACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 90 bp TTGGCATCTATGCCAAAGGTGTTCATCACCTCTGGGGACACATGCTaGCCAAAGAAGAACTCTACCTCCCCATTGGGTCCTTGGTCGGGA +
Preference number: 6 (lower is better)
Translates to: LASMPKVFITSGDTC*PKKNSTSPLGPWSG
Trigger: TCCCGACCAAGGACCCAATGGGGAGGTAGAGTTCTTCTTTGGCAAGCATGTGTCCCCAGAGGTGATGAACACCTTTGGCATAGATGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 90 bp GGACACATGCTTGCCAAAGAAGAACTCTACCTCCCCATTGGGTCCTaGGTCGGGATCTGTAGCAGTCAGGTTTATGAGAAGAGTACCAGG +
Preference number: 6 (lower is better)
Translates to: GHMLAKEELYLPIGS*VGICSSQVYEKSTR
Trigger: CCTGGTACTCTTCTCATAAACCTGACTGCTACAGATCCCGACCAAGGACCCAATGGGGAGGTAGAGTTCTTCTTTGGCAAGCATGTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 90 bp ACCTCTGGGGACACATGCTTGCCAAAGAAGAACTCTACCTCCCCATaGGGTCCTTGGTCGGGATCTGTAGCAGTCAGGTTTATGAGAAGA +
Preference number: 6 (lower is better)
Translates to: TSGDTCLPKKNSTSP*GPWSGSVAVRFMRR
Trigger: TCTTCTCATAAACCTGACTGCTACAGATCCCGACCAAGGACCCAATGGGGAGGTAGAGTTCTTCTTTGGCAAGCATGTGTCCCCAGAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 72 bp CCCATTGTCATAGGCGGTCAGCACCAGATCAAAATATaGGTGGAGTTCCCTGTCCAACTCCTTCACCACCAC +
Preference number: 6 (lower is better)
Translates to: PIVIGGQHQIKI*VEFPVQLLHHH
Trigger: GTGGTGGTGAAGGAGTTGGACAGGGAACTCCACTCATATTTTGATCTGGTGCTGACCGCCTATGACAATGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 72 bp CCGTTAGTCCTTTTCAGTCTGAAGTGGCCCAGCTCTTaGTTCAGCCAACAGTGGACGAGACCGTTGTTTCCT +
Preference number: 6 (lower is better)
Translates to: PLVLFSLKWPSS*FSQQWTRPLFP
Trigger: AGGAAACAACGGTCTCGTCCACTGTTGGCTGAATCAAGAGCTGGGCCACTTCAGACTGAAAAGGACTAACGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 72 bp TCTTGGGCAAACACAGTGAGAGTATATATGGGCCACTaGTCTCTGTCCAGTGTGGCATTGGTGAGCAGCATG +
Preference number: 6 (lower is better)
Translates to: SWANTVRVYMGH*SLSSVALVSSM
Trigger: CATGCTGCTCACCAATGCCACACTGGACAGAGAGCAGTGGCCCATATATACTCTCACTGTGTTTGCCCAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 72 bp TCAGGAAGGTTTAGGTTCTCCCGGGAGGCATTCCTCTaGCTGGGATGGTTAAAGAGAAAGTTGAAGGTGTCC +
Preference number: 6 (lower is better)
Translates to: SGRFRFSREAFL*LGWLKRKLKVS
Trigger: GGACACCTTCAACTTTCTCTTTAACCATCCCAGGCAGAGGAATGCCTCCCGGGAGAACCTAAACCTTCCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp CCTGAATCTCCACATGAATTAGAGCAGACGCCCCTGTaGCAAGCACGTCAAATGACACCAGACAGGGATCTT +
Preference number: 6 (lower is better)
Translates to: PESPHELEQTPL*QARQMTPDRDL
Trigger: AAGATCCCTGTCTGGTGTCATTTGACGTGCTTGCCACAGGGGCGTCTGCTCTAATTCATGTGGAGATTCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp GCCACGATTGTTAACAAAAGGAAAGACCAGGGGCTGTaGGTAGCCTTTGGTGGTATACCAGTACCTGCTGGA +
Preference number: 6 (lower is better)
Translates to: ATIVNKRKDQGL*VAFGGIPVPAG
Trigger: TCCAGCAGGTACTGGTATACCACCAAAGGCTACCCACAGCCCCTGGTCTTTCCTTTTGTTAACAATCGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp TATTTATTTCCTCGGTGGTTTGGTTTGGGCTGGAATTaGCCCTGGTGCAGCAAGGACAGCAGCTGGGAGATT +
Preference number: 6 (lower is better)
Translates to: YLFPRWFGLGWN*PWCSKDSSWEI
Trigger: AATCTCCCAGCTGCTGTCCTTGCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCACCGAGGAAATAAATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 72 bp GACACATGCTTGCCAAAGAAGAACTCTACCTCCCCATaGGGTCCTTGGTCGGGATCTGTAGCAGTCAGGTTT +
Preference number: 6 (lower is better)
Translates to: DTCLPKKNSTSP*GPWSGSVAVRF
Trigger: AAACCTGACTGCTACAGATCCCGACCAAGGACCCAATGGGGAGGTAGAGTTCTTCTTTGGCAAGCATGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 72 bp GCTCATGAGCAGAATCCCTTAGGTGGTCCACACTGGTaGCAAACACGACCTTCAATGAAACTTGGGTCTGCA +
Preference number: 6 (lower is better)
Translates to: AHEQNPLGGPHW*QTRPSMKLGSA
Trigger: TGCAGACCCAAGTTTCATTGAAGGTCGTGTTTGTCACCAGTGTGGACCACCTAAGGGATTCTGCTCATGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 72 bp CCACTCTTAGTTCTTGGGACAGTTTCCCTATCACCGTaGCAGACGGCACTTCCTCTGTCACTTGGAATTTCA +
Preference number: 6 (lower is better)
Translates to: PLLVLGTVSLSP*QTALPLSLGIS
Trigger: TGAAATTCCAAGTGACAGAGGAAGTGCCGTCTGGCACGGTGATAGGGAAACTGTCCCAAGAACTAAGAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS GCA 72 bp TCTATGCCAAAGGTGTTCATCACCTCTGGGGACACATaGTTGCCAAAGAAGAACTCTACCTCCCCATTGGGT +
Preference number: 6 (lower is better)
Translates to: SMPKVFITSGDT*LPKKNSTSPLG
Trigger: ACCCAATGGGGAGGTAGAGTTCTTCTTTGGCAAGCATGTGTCCCCAGAGGTGATGAACACCTTTGGCATAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp TTAAAGAGAAAGTTGAAGGTGTCCTGCAGTACCTCCTaGCTCTCTGCCAGTTCTCCCTGGTTGCCTTGGTTA +
Preference number: 6 (lower is better)
Translates to: LKRKLKVSCSTS*LSASSPWLPWL
Trigger: TAACCAAGGCAACCAGGGAGAACTGGCAGAGAGCCAGGAGGTACTGCAGGACACCTTCAACTTTCTCTTTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 72 bp CTTGCCAAAGAAGAACTCTACCTCCCCATTGGGTCCTaGGTCGGGATCTGTAGCAGTCAGGTTTATGAGAAG +
Preference number: 6 (lower is better)
Translates to: LAKEELYLPIGS*VGICSSQVYEK
Trigger: CTTCTCATAAACCTGACTGCTACAGATCCCGACCAAGGACCCAATGGGGAGGTAGAGTTCTTCTTTGGCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CAA 90 bp GAACTCTCAGCAAACACTGGACTATTGTCATTGGAGTCCAGGACATaGACCTTGACCACGCTGATTCCTGACTTAGGGGGATTCCCATTG +
Preference number: 6 (lower is better)
Translates to: ELSANTGLLSLESRT*TLTTLIPDLGGFPL
Trigger: CAATGGGAATCCCCCTAAGTCAGGAATCAGCGTGGTCAAGGTCAATGTCCTGGACTCCAATGACAATAGTCCAGTGTTTGCTGAGAGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 72 bp CCTGCTCGTCTTTGGGAAACTGTGGCTGGTGGTCATTaGTGTCTAGCACCTGAATCTCCACATGAATTAGAG +
Preference number: 6 (lower is better)
Translates to: PARLWETVAGGH*CLAPESPHELE
Trigger: CTCTAATTCATGTGGAGATTCAGGTGCTAGACATCAATGACCACCAGCCACAGTTTCCCAAAGACGAGCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp TTGCCAAAGAAGAACTCTACCTCCCCATTGGGTCCTTaGTCGGGATCTGTAGCAGTCAGGTTTATGAGAAGA +
Preference number: 6 (lower is better)
Translates to: LPKKNSTSPLGP*SGSVAVRFMRR
Trigger: TCTTCTCATAAACCTGACTGCTACAGATCCCGACCAAGGACCCAATGGGGAGGTAGAGTTCTTCTTTGGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS CCA 72 bp TGTAGGCCCTATTATCCTTTCTCTCTGTCCTGCAGATaGACACGAACAGGGCTAAGAGCAATCCAAAGATGG +
Preference number: 6 (lower is better)
Translates to: CRPYYPFSLSCR*TRTGLRAIQRW
Trigger: CCATCTTTGGATTGCTCTTAGCCCTGTTCGTGTCCATCTGCAGGACAGAGAGAAAGGATAATAGGGCCTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8
CDS TCA 72 bp GTGACTTCTCCTGTTTCAAAGTCAATAATGACTAAGTaGGAAACGGGGGAGTCCTTGATACGGTATGACACT +
Preference number: 6 (lower is better)
Translates to: VTSPVSKSIMTK*ETGESLIRYDT
Trigger: AGTGTCATACCGTATCAAGGACTCCCCCGTTTCTCACTTAGTCATTATTGACTTTGAAACAGGAGAAGTCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025311.8