RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCBP4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023495

Ensembl transcript IDs: ENSMUST00000024260.14, ENSMUST00000185507.7, ENSMUST00000185779.7, ENSMUST00000185874.7, ENSMUST00000188396.2, ENSMUST00000189099.2, ENSMUST00000190428.7, ENSMUST00000190430.2, ENSMUST00000213156.2, ENSMUST00000213201.2, ENSMUST00000213752.2, ENSMUST00000214252.2, ENSMUST00000215656.2, ENSMUST00000216379.2

Found 336 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTGCCGGCGGTCCTaGCTGCCCCTGCCGGTGCCTCAGCCGGCCGGCCTCAGTAGGGGG +
Preference number: 1 (lower is better)
Translates to: LLGQEGCGGSPCRRS*LPLPVPQPAGLSRG
Trigger: CCCCCTACTGAGGCCGGCCGGCTGAGGCACCGGCAGGGGCAGGCAGGACCGCCGGCAGGGGCTGCCTCCACATCCTTCCTGCCCAAGGAG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213156.2
ENSMUST00000213752.2
3UTR GCA 90 bp CCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTaGCGGCGGTCCTGCCTGCCCCTGCCGGTGCCTCAGCCGGCCGGC +
Preference number: 1 (lower is better)
Translates to: PWWSLLGQEGCGGSP*RRSCLPLPVPQPAG
Trigger: GCCGGCCGGCTGAGGCACCGGCAGGGGCAGGCAGGACCGCCGGCAGGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
3UTR TCA 90 bp GGCCCAGGCAGTGATGAGGTACTGAGCCAGGGCGATGGAGACCGGTaGGCCAGTGATGGTCACATGCCGCTCCCCAGCACCCTCCGCTTG +
Preference number: 1 (lower is better)
Translates to: GPGSDEVLSQGDGDR*ASDGHMPLPSTLRL
Trigger: CAAGCGGAGGGTGCTGGGGAGCGGCATGTGACCATCACTGGCTCACCGGTCTCCATCGCCCTGGCTCAGTACCTCATCACTGCCTGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
3UTR GCA 90 bp GGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTaGCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGGTGGCCCAGG +
Preference number: 1 (lower is better)
Translates to: GGEFLPFSFLAPIGR*HLGSVGRQARRWPR
Trigger: CCTGGGCCACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
3UTR GCA 90 bp GGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTaGCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGGTGGCCCTGG +
Preference number: 1 (lower is better)
Translates to: GGEFLPFSFLAPIGR*HLGSVGRQARRWPW
Trigger: CCAGGGCCACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000213752.2
3UTR CCA 90 bp GGTGCATCCATGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTaGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTGCCGG +
Preference number: 1 (lower is better)
Translates to: GASMRLALLALETPW*SLLGQEGCGGSPCR
Trigger: CCGGCAGGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
3UTR CCA 90 bp ATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTaGCAGTGTAGGCCGCCAAGCCCGGCGGTGGCCCTGGGGAAGCAG +
Preference number: 1 (lower is better)
Translates to: ISAVQLSCSHWPLPS*QCRPPSPAVALGKQ
Trigger: CTGCTTCCCCAGGGCCACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213752.2
3UTR TCA 90 bp GGGCAGGGTAGGGGGTGCATCCATGCGTCTGGCATTACTGGCGCTTaGGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGG +
Preference number: 1 (lower is better)
Translates to: GQGRGCIHASGITGA*DPMVESPWAGRMWR
Trigger: CCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGCACCCCCTACCCTGCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
3UTR GCA 90 bp ATGCCGCTCCCCAGCACCCTCCGCTTGGTTCCCGATCTTAATATGTaGCCCCGACATCTGCCGGATCTCGCTGATCTTGCTGCCCTGGCG +
Preference number: 1 (lower is better)
Translates to: MPLPSTLRLVPDLNM*PRHLPDLADLAALA
Trigger: CGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACATATTAAGATCGGGAACCAAGCGGAGGGTGCTGGGGAGCGGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
3UTR GCA 90 bp CCGGCCGGCCTCAGTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTaGTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGC +
Preference number: 1 (lower is better)
Translates to: PAGLSRGRISAVQLS*SHWPLPSWQCRPPS
Trigger: GCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTACTGAGGCCGGCCGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
3UTR CCA 90 bp ATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTaGCAGTGTAGGCCGCCAAGCCCGGCGGTGGCCCAGGCAGTGATG +
Preference number: 1 (lower is better)
Translates to: ISAVQLSCSHWPLPS*QCRPPSPAVAQAVM
Trigger: CATCACTGCCTGGGCCACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
3UTR CCA 90 bp CCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATaGGGCAGGGTAGGGGGTGCATCCATGCGTCTGGCATTACTGGCG +
Preference number: 1 (lower is better)
Translates to: PWARNCPLSEEDLQR*GRVGGASMRLALLA
Trigger: CGCCAGTAATGCCAGACGCATGGATGCACCCCCTACCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
3UTR CCA 90 bp CTCAGTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTaGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGGTG +
Preference number: 1 (lower is better)
Translates to: LSRGRISAVQLSCSH*PLPSWQCRPPSPAV
Trigger: CACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTACTGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
3UTR GCA 90 bp GCACCCTCCGCTTGGTTCCCGATCTTAATATGTGCCCCCGACATCTaGCGGATCTCGCTGATCTTGCTGCCCTGGCGTCCGATCACACAG +
Preference number: 1 (lower is better)
Translates to: APSAWFPILICAPDI*RISLILLPWRPITQ
Trigger: CTGTGTGATCGGACGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACATATTAAGATCGGGAACCAAGCGGAGGGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
3UTR TCA 90 bp ACAAAGATAAGACAGGATATGCAGAATGGATACAGAAGTAGTAAATaGGGCAACATAGATGTCTTAGGTAGAATACCTAAAGGAAAGGAG +
Preference number: 1 (lower is better)
Translates to: TKIRQDMQNGYRSSK*GNIDVLGRIPKGKE
Trigger: CTCCTTTCCTTTAGGTATTCTACCTAAGACATCTATGTTGCCTCATTTACTACTTCTGTATCCATTCTGCATATCCTGTCTTATCTTTGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
3UTR-3UTR GCA 90 bp GGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGGTGGCCCAGGCAGTGTGGAGGCAGCCCCTaGCGGCGGTCCTGCCTGCCC +
Preference number: 2 (lower is better)
Translates to: GRCHLGSVGRQARRWPRQCGGSP*RRSCLP
Trigger: GGGCAGGCAGGACCGCCGGCAGGGGCTGCCTCCACA...CTGCCTGGGCCACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
3UTR-3UTR TCA 90 bp TGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGGTGAGACCGGTGAGCCAGTaGTGGTCACATGCCGCTCCC +
Preference number: 2 (lower is better)
Translates to: CSHWPLPSWQCRPPSPAVRPVSQ*WSHAAP
Trigger: GGGAGCGGCATGTGACCATCACTGGCTCACCGGTCT...CACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
3UTR-3UTR GCA 90 bp GGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGTAGGTGTGGAGGCAGCCCCTaGCGGCGGTCCTGCCTGCCC +
Preference number: 2 (lower is better)
Translates to: GQKLSPLRGGSPKMGQGRCGGSP*RRSCLP
Trigger: GGGCAGGCAGGACCGCCGGCAGGGGCTGCCTCCACA...CCTACCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
3UTR-3UTR GCA 90 bp CAGTGTAGGCCGCCAAGCCCGGCGGTGGCCCTGGGGAAGCAGGTGGTAGAGCCATGTGCCCCCGACATCTaGCGGATCTCGCTGATCTTG +
Preference number: 2 (lower is better)
Translates to: QCRPPSPAVALGKQVVEPCAPDI*RISLIL
Trigger: CAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACA...TGGCTCTACCACCTGCTTCCCCAGGGCCACCGCCGGGCTTGGCGGCCTACACTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000213752.2
3UTR-3UTR CCA 90 bp CTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTGGGCAGGAAGGATGTaGAGGCAGCCCCTGCCGGCG +
Preference number: 2 (lower is better)
Translates to: LETPWWSLLGQEGCGGSPWAGRM*RQPLPA
Trigger: CGCCGGCAGGGGCTGCCTCCACATCCTTCCTGCCCA...GGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
3UTR-3UTR CCA 90 bp CAGTGTAGGCCGCCAAGCCCGGCGGTGGCCCTGGGGAAGCAGGTGGTAGAGCCACTGATCTTGCTGCCCTaGCGTCCGATCACACAGCCA +
Preference number: 2 (lower is better)
Translates to: QCRPPSPAVALGKQVVEPLILLP*RPITQP
Trigger: TGGCTGTGTGATCGGACGCCAGGGCAGCAAGATCAG...TGGCTCTACCACCTGCTTCCCCAGGGCCACCGCCGGGCTTGGCGGCCTACACTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213752.2
3UTR-3UTR GCA 90 bp GCATCCATGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTTGTGGAGGCAGCCCCTaGCGGCGGTCCTGCCTGCCC +
Preference number: 2 (lower is better)
Translates to: ASMRLALLALETPWWSLLCGGSP*RRSCLP
Trigger: GGGCAGGCAGGACCGCCGGCAGGGGCTGCCTCCACA...AAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
3UTR-3UTR CCA 90 bp TGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCATGGGCAGGAAGGATGTaGAGGCAGCCCCTGCCGGCG +
Preference number: 2 (lower is better)
Translates to: CPGAAILLEPWARNCPLSWAGRM*RQPLPA
Trigger: CGCCGGCAGGGGCTGCCTCCACATCCTTCCTGCCCA...TGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
3UTR-3UTR GCA 90 bp CCCTGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCGGGCAGGGTAGGGGGTaGATCCATGCGTCTGGCATT +
Preference number: 2 (lower is better)
Translates to: PCPGAAILLEPWARNCPLGQGRG*IHASGI
Trigger: AATGCCAGACGCATGGATGCACCCCCTACCCTGCCC...GAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCAGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
3UTR-3UTR TCA 90 bp AGCCGGCCGGCCTCAGTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCTCTGCCGGATCTCGCTaGTCTTGCTGCCCTGGCGTC +
Preference number: 2 (lower is better)
Translates to: SRPASVGGEFLPFSFLAPSAGSR*SCCPGV
Trigger: GACGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGA...GGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTACTGAGGCCGGCCGGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
3UTR-3UTR GCA 90 bp AGCCGGCCGGCCTCAGTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCCCAGTGATGGTCACATaGCGCTCCCCAGCACCCTCC +
Preference number: 2 (lower is better)
Translates to: SRPASVGGEFLPFSFLAPPVMVT*RSPAPS
Trigger: GGAGGGTGCTGGGGAGCGGCATGTGACCATCACTGG...GGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTACTGAGGCCGGCCGGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
3UTR-3UTR CCA 90 bp GCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCTGGGCAGGAAGGATGTaGAGGCAGCCCCTGCCGGCG +
Preference number: 2 (lower is better)
Translates to: AILLEPWARNCPLSEEDLWAGRM*RQPLPA
Trigger: CGCCGGCAGGGGCTGCCTCCACATCCTTCCTGCCCA...GAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
3UTR-3UTR CCA 90 bp ACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGTGGGCAGGAAGGATGTaGAGGCAGCCCCTGCCGGCG +
Preference number: 2 (lower is better)
Translates to: TPRTLGQKLSPLRGGSPKWAGRM*RQPLPA
Trigger: CGCCGGCAGGGGCTGCCTCCACATCCTTCCTGCCCA...CTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
3UTR-3UTR TCA 90 bp CGCCCCTCACTCTCCTCCAATTCCCACTGGGACAGCAGGATGAAGCCCAAAGGGGGCATTACTGGCGCTTaGGACCCCATGGTGGAGTCT +
Preference number: 2 (lower is better)
Translates to: RPSLSSNSHWDSRMKPKGGITGA*DPMVES
Trigger: AGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCC...CCCTTTGGGCTTCATCCTGCTGTCCCAGTGGGAATTGGAGGAGAGTGAGGGGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
3UTR-3UTR TCA 90 bp CCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGCATTACTGGCGCTTaGGACCCCATGGTGGAGTCT +
Preference number: 2 (lower is better)
Translates to: PWGCHTPRTLGQKLSPLRGITGA*DPMVES
Trigger: AGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCC...TCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
3UTR-3UTR TCA 90 bp GCCTCAGTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCAGACCGGTGAGCCAGTaGTGGTCACATGCCGCTCCC +
Preference number: 2 (lower is better)
Translates to: ASVGGEFLPFSFLAPIGRRPVSQ*WSHAAP
Trigger: GGGAGCGGCATGTGACCATCACTGGCTCACCGGTCT...GCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTACTGAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
3UTR-3UTR TCA 90 bp ATGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGGCATTACTGGCGCTTaGGACCCCATGGTGGAGTCT +
Preference number: 2 (lower is better)
Translates to: MRLALLALETPWWSLLGQGITGA*DPMVES
Trigger: AGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCC...CTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
3UTR-3UTR TCA 90 bp GGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGTAGGGGCATTACTGGCGCTTaGGACCCCATGGTGGAGTCT +
Preference number: 2 (lower is better)
Translates to: GQKLSPLRGGSPKMGQGRGITGA*DPMVES
Trigger: AGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCC...CCTACCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
3UTR-3UTR TCA 90 bp GCCGGCCTCAGTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGGGCGATGGAGACCGGTaGGCCAGTGATGGTCACATG +
Preference number: 2 (lower is better)
Translates to: AGLSRGRISAVQLSCSHWGDGDR*ASDGHM
Trigger: CATGTGACCATCACTGGCTCACCGGTCTCCATCGCC...CCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTACTGAGGCCGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
3UTR-3UTR GCA 90 bp AGCCAGTCTATTCCAGTCAAAAGGGTATCAGTAGAAGCAGCAGGATCTACAGGGTGTGGAGGCAGCCCCTaGCGGCGGTCCTGCCTGCCC +
Preference number: 2 (lower is better)
Translates to: SQSIPVKRVSVEAAGSTGCGGSP*RRSCLP
Trigger: GGGCAGGCAGGACCGCCGGCAGGGGCTGCCTCCACA...CCCTGTAGATCCTGCTGCTTCTACTGATACCCTTTTGACTGGAATAGACTGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
3UTR-3UTR GCA 90 bp CTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCCCCGATCTTAATATGTaGCCCCGACATCTGCCGGAT +
Preference number: 2 (lower is better)
Translates to: LETPWWSLLGQEGCGGSPPDLNM*PRHLPD
Trigger: ATCCGGCAGATGTCGGGGGCACATATTAAGATCGGG...GGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAG
59% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
3UTR-3UTR CCA 90 bp CGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAACTGATCTTGCTGCCCTaGCGTCCGATCACACAGCCA +
Preference number: 2 (lower is better)
Translates to: RLALLALETPWWSLLGQELILLP*RPITQP
Trigger: TGGCTGTGTGATCGGACGCCAGGGCAGCAAGATCAG...TTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
3UTR-3UTR CCA 90 bp GAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCATGGCCGCTGCCATCTTaGCAGTGTAGGCCGCCAAGC +
Preference number: 2 (lower is better)
Translates to: ENFCRSAFLLPLAAAILAWPLPS*QCRPPS
Trigger: GCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCA...TGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
3UTR-3UTR CCA 90 bp CCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCCAGCACCCTCCGCTTaGTTCCCGATCTTAATATGT +
Preference number: 2 (lower is better)
Translates to: PFSFLAPIGRCHLGSVGRPAPSA*FPILIC
Trigger: ACATATTAAGATCGGGAACCAAGCGGAGGGTGCTGG...GCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
3UTR-3UTR GCA 90 bp GCATCCATGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTCCCGATCTTAATATGTaGCCCCGACATCTGCCGGAT +
Preference number: 2 (lower is better)
Translates to: ASMRLALLALETPWWSLLPDLNM*PRHLPD
Trigger: ATCCGGCAGATGTCGGGGGCACATATTAAGATCGGG...AAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
3UTR-3UTR CCA 90 bp ACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGCTTGAGACCCCATGGTaGAGTCTCCTTGGGCAGGAA +
Preference number: 2 (lower is better)
Translates to: TPRTLGQKLSPLRGGSPKLETPW*SLLGQE
Trigger: TTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAG...CTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
3UTR-3UTR GCA 90 bp GGGAGGGAGGGCAGAAACCACAGGCAGACACAAGACAAGTTAAGGGGAAAAATAGGAGCACCAGAGAACTaGTCCAGAGCACAGGAGGTG +
Preference number: 2 (lower is better)
Translates to: GREGRNHRQTQDKLRGKIGAPEN*SRAQEV
Trigger: CACCTCCTGTGCTCTGGAGCAGTTCTCTGGTGCTCC...TATTTTTCCCCTTAACTTGTCTTGTGTCTGCCTGTGGTTTCTGCCCTCCCTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
3UTR-3UTR CCA 90 bp GAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTAGTTGGAGAGGGAGATaGCATAAGGTGTGCCCAGCA +
Preference number: 2 (lower is better)
Translates to: EFLPFSFLAPIGRCHLGSSWRGR*HKVCPA
Trigger: TGCTGGGCACACCTTATGCCATCTCCCTCTCCAACT...ACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213752.2
3UTR TCA 72 bp CCAAGCCCGGCGGTGGCCCAGGCAGTGATGAGGTACTaGGCCAGGGCGATGGAGACCGGTGAGCCAGTGATG +
Preference number: 3 (lower is better)
Translates to: PSPAVAQAVMRY*ARAMETGEPVM
Trigger: CATCACTGGCTCACCGGTCTCCATCGCCCTGGCTCAGTACCTCATCACTGCCTGGGCCACCGCCGGGCTTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
3UTR GCA 72 bp AGGGCGATGGAGACCGGTGAGCCAGTGATGGTCACATaGCGCTCCCCAGCACCCTCCGCTTGGTTCCCGATC +
Preference number: 3 (lower is better)
Translates to: RAMETGEPVMVT*RSPAPSAWFPI
Trigger: GATCGGGAACCAAGCGGAGGGTGCTGGGGAGCGGCATGTGACCATCACTGGCTCACCGGTCTCCATCGCCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
3UTR CCA 72 bp GGCCCTGGCCGCCCCTCACTCTCCTCCAATTCCCACTaGGACAGCAGGATGAAGCCCAAAGGGATGGAGGGG +
Preference number: 3 (lower is better)
Translates to: GPGRPSLSSNSH*DSRMKPKGMEG
Trigger: CCCCTCCATCCCTTTGGGCTTCATCCTGCTGTCCCAGTGGGAATTGGAGGAGAGTGAGGGGCGGCCAGGGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
3UTR CCA 72 bp GTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTaGCAGTGTAGGCCGCCAAGCCCGGCGGTGGCCCAG +
Preference number: 3 (lower is better)
Translates to: VQLSCSHWPLPS*QCRPPSPAVAQ
Trigger: CTGGGCCACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
3UTR CCA 72 bp GTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTaGCAGTGTAGGCCGCCAAGCCCGGCGGTGGCCCTG +
Preference number: 3 (lower is better)
Translates to: VQLSCSHWPLPS*QCRPPSPAVAL
Trigger: CAGGGCCACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213752.2
3UTR-3UTR CAA 90 bp CTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCCGGATCTCGCTGATCTaGCTGCCCTGGCGTCCGATC +
Preference number: 3 (lower is better)
Translates to: LALETPWWSLLGQEGCGGRISLI*LPWRPI
Trigger: GATCGGACGCCAGGGCAGCAAGATCAGCGAGATCCG...GCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
3UTR TCA 72 bp AGTGATGAGGTACTGAGCCAGGGCGATGGAGACCGGTaGGCCAGTGATGGTCACATGCCGCTCCCCAGCACC +
Preference number: 3 (lower is better)
Translates to: SDEVLSQGDGDR*ASDGHMPLPST
Trigger: GGTGCTGGGGAGCGGCATGTGACCATCACTGGCTCACCGGTCTCCATCGCCCTGGCTCAGTACCTCATCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
3UTR GCA 72 bp TTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTaGCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGG +
Preference number: 3 (lower is better)
Translates to: FLPFSFLAPIGR*HLGSVGRQARR
Trigger: CCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
3UTR-3UTR CAA 90 bp CTGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCCATGGTGGAGTCTCCTaGGGCAGGAAGGATGTGGAG +
Preference number: 3 (lower is better)
Translates to: LPWGCHTPRTLGQKLSPLHGGVS*GRKDVE
Trigger: CTCCACATCCTTCCTGCCCAAGGAGACTCCACCATG...GAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
3UTR TCA 72 bp AGGGGGTGCATCCATGCGTCTGGCATTACTGGCGCTTaGGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGG +
Preference number: 3 (lower is better)
Translates to: RGCIHASGITGA*DPMVESPWAGR
Trigger: CCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGCACCCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
3UTR TCA 72 bp GACAGCAGGATGAAGCCCAAAGGGATGGAGGGGACATaGGTAACCCCTCCCACAGCAGGGCTCCAGAGAGCC +
Preference number: 3 (lower is better)
Translates to: DSRMKPKGMEGT*VTPPTAGLQRA
Trigger: GGCTCTCTGGAGCCCTGCTGTGGGAGGGGTTACTCATGTCCCCTCCATCCCTTTGGGCTTCATCCTGCTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
3UTR TCA 72 bp GACTTGGCCGTCTCTAGACAGGCAGTGATGAGGTACTaGGCCAGGGCGATGGAGACCGGTGAGCCAGTGATG +
Preference number: 3 (lower is better)
Translates to: DLAVSRQAVMRY*ARAMETGEPVM
Trigger: CATCACTGGCTCACCGGTCTCCATCGCCCTGGCTCAGTACCTCATCACTGCCTGTCTAGAGACGGCCAAGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213752.2
3UTR GCA 72 bp GCTTGGTTCCCGATCTTAATATGTGCCCCCGACATCTaGCGGATCTCGCTGATCTTGCTGCCCTGGCGTCCG +
Preference number: 3 (lower is better)
Translates to: AWFPILICAPDI*RISLILLPWRP
Trigger: CGGACGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACATATTAAGATCGGGAACCAAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
3UTR CCA 72 bp TCCATGCGTCTGGCATTACTGGCGCTTGAGACCCCATaGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGC +
Preference number: 3 (lower is better)
Translates to: SMRLALLALETP*WSLLGQEGCGG
Trigger: GCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCATGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
3UTR GCA 72 bp CCCAGCACCCTCCGCTTGGTTCCCGATCTTAATATGTaGCCCCGACATCTGCCGGATCTCGCTGATCTTGCT +
Preference number: 3 (lower is better)
Translates to: PSTLRLVPDLNM*PRHLPDLADLA
Trigger: AGCAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACATATTAAGATCGGGAACCAAGCGGAGGGTGCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
3UTR CCA 72 bp AGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATaGGGCAGGGTAGGGGGTGCATCCATGCGTCTGGCA +
Preference number: 3 (lower is better)
Translates to: RNCPLSEEDLQR*GRVGGASMRLA
Trigger: TGCCAGACGCATGGATGCACCCCCTACCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
3UTR CCA 72 bp GGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTaGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGC +
Preference number: 3 (lower is better)
Translates to: GRISAVQLSCSH*PLPSWQCRPPS
Trigger: GCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
3UTR GCA 72 bp CTCAGTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTaGTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGG +
Preference number: 3 (lower is better)
Translates to: LSRGRISAVQLS*SHWPLPSWQCR
Trigger: CCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTACTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
3UTR TCA 72 bp AGACAGGATATGCAGAATGGATACAGAAGTAGTAAATaGGGCAACATAGATGTCTTAGGTAGAATACCTAAA +
Preference number: 3 (lower is better)
Translates to: RQDMQNGYRSSK*GNIDVLGRIPK
Trigger: TTTAGGTATTCTACCTAAGACATCTATGTTGCCTCATTTACTACTTCTGTATCCATTCTGCATATCCTGTCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR TCA 90 bp GGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGGTGGCCCAGGCAGGCTGCTGGAGCTTGGTaGCCTCTGCAGGGGTCACTG +
Preference number: 4 (lower is better)
Translates to: GRCHLGSVGRQARRWPRQAAGAW*PLQGSL
Trigger: CAGTGACCCCTGCAGAGGTCACCAAGCTCCAGCAGC...CTGCCTGGGCCACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
CDS-3UTR CCA 90 bp GGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGGTGGCCCAGGCAGGCAAAGGGAACGGCGTaGCCTGAGAGCTGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: GRCHLGSVGRQARRWPRQAKGTA*PESCWS
Trigger: GCTCCAGCAGCTCTCAGGCCACGCCGTTCCCTTTGC...CTGCCTGGGCCACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
CDS-3UTR TCA 90 bp AAGCCCGGCGGTGGCCCAGGCAGTGATGAGGTACTGAGCCAGGGCGATGGAGACGGCGCACACACAGGATaGTGGCGTCAGGCACCCCGG +
Preference number: 4 (lower is better)
Translates to: KPGGGPGSDEVLSQGDGDGAHTG*WRQAPR
Trigger: CCGGGGTGCCTGACGCCATCATCCTGTGTGTGCGCC...GTCTCCATCGCCCTGGCTCAGTACCTCATCACTGCCTGGGCCACCGCCGGGCTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
CDS-3UTR TCA 90 bp CCCGGCGGTGGCCCAGGCAGTGATGAGGTACTGAGCCAGGGCGATGGAGACCGGGCTGCTGGAGCTTGGTaGCCTCTGCAGGGGTCACTG +
Preference number: 4 (lower is better)
Translates to: PGGGPGSDEVLSQGDGDRAAGAW*PLQGSL
Trigger: CAGTGACCCCTGCAGAGGTCACCAAGCTCCAGCAGC...CCGGTCTCCATCGCCCTGGCTCAGTACCTCATCACTGCCTGGGCCACCGCCGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
CDS-3UTR CCA 90 bp GGCCCCTGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCGTGGCGAGAAAGGGGTaGGCAGGTCTGCGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: GPCPGAAILLEPWARNCPVARKG*AGLRGL
Trigger: CAGCCCCCGCAGACCTGCCCACCCCTTTCTCGCCAC...GGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCAGGGGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
CDS-3UTR CCA 90 bp GGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGGTGGCCCAGGCAGGGACTGGCACCACACTaGGTGATGCAAAGGGAACGG +
Preference number: 4 (lower is better)
Translates to: GRCHLGSVGRQARRWPRQGLAPH*VMQRER
Trigger: CCGTTCCCTTTGCATCACCCAGTGTGGTGCCAGTCC...CTGCCTGGGCCACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185507.7
CDS-3UTR TCA 90 bp TCCAGAGCACAGGAGGTGCTCCCTTCCACCCCAACCTGTGCTCCCCGCTGCCCAGGGAACGGCGTGGCCTaGGAGCTGCTGGAGCTTGGT +
Preference number: 4 (lower is better)
Translates to: SRAQEVLPSTPTCAPRCPGNGVA*ELLELG
Trigger: ACCAAGCTCCAGCAGCTCTCAGGCCACGCCGTTCCC...TGGGCAGCGGGGAGCACAGGTTGGGGTGGAAGGGAGCACCTCCTGTGCTCTGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CCA 90 bp CCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGCGCCAAGCCCGGCGGTaGCCCTGGGGAAGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: PGPETVPSQRRISKDGAGRQARR*PWGSRW
Trigger: CCACCTGCTTCCCCAGGGCCACCGCCGGGCTTGGCG...CCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
CDS-3UTR CCA 90 bp AAGCCCGGCGGTGGCCCAGGCAGTGATGAGGTACTGAGCCAGGGCGATGGAGACCCTGCCACCTGCACCTaGGCTCCTGTAGTCTCTCGG +
Preference number: 4 (lower is better)
Translates to: KPGGGPGSDEVLSQGDGDPATCT*APVVSR
Trigger: CCGAGAGACTACAGGAGCCCAGGTGCAGGTGGCAGG...GTCTCCATCGCCCTGGCTCAGTACCTCATCACTGCCTGGGCCACCGCCGGGCTT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
CDS-3UTR CCA 90 bp GGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGGTGGCCCAGGCAGTGTGGCTCCTTTGGGTaGGGACTCCAGAATAACAGC +
Preference number: 4 (lower is better)
Translates to: GRCHLGSVGRQARRWPRQCGSFG*GLQNNS
Trigger: GCTGTTATTCTGGAGTCCCCACCCAAAGGAGCCACA...CTGCCTGGGCCACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
CDS-3UTR CCA 90 bp GGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGGTGGCCCAGGCAGGATGATACGGGATTGTaGCTCCTTTGGGTGGGGACT +
Preference number: 4 (lower is better)
Translates to: GRCHLGSVGRQARRWPRQDDTGL*LLWVGT
Trigger: AGTCCCCACCCAAAGGAGCCACAATCCCGTATCATC...CTGCCTGGGCCACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
CDS-3UTR TCA 90 bp ACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTGCCGGGCACCCCGGACACAGTaGCAGCACGCTCTGTGGAAT +
Preference number: 4 (lower is better)
Translates to: TPWWSLLGQEGCGGSPCRAPRTQ*QHALWN
Trigger: ATTCCACAGAGCGTGCTGTCACTGTGTCCGGGGTGC...CCGGCAGGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp ATGCCGCTCCCCAGCACCCTCCGCTTGGTTCCCGATCTTAATATGTGCCCCCGAGGCGCACACACAGGATaGTGGCGTCAGGCACCCCGG +
Preference number: 4 (lower is better)
Translates to: MPLPSTLRLVPDLNMCPRGAHTG*WRQAPR
Trigger: CCGGGGTGCCTGACGCCATCATCCTGTGTGTGCGCC...TCGGGGGCACATATTAAGATCGGGAACCAAGCGGAGGGTGCTGGGGAGCGGCAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000185507.7
CDS-3UTR TCA 90 bp GGCCCCTGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCTGGCACCACACTGGGTaGTGCAAAGGGAACGGCGTG +
Preference number: 4 (lower is better)
Translates to: GPCPGAAILLEPWARNCPWHHTG*CKGNGV
Trigger: CACGCCGTTCCCTTTGCATCACCCAGTGTGGTGCCA...GGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCAGGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp ACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTGCCGGTGGCACCACACTGGGTaGTGCAAAGGGAACGGCGTG +
Preference number: 4 (lower is better)
Translates to: TPWWSLLGQEGCGGSPCRWHHTG*CKGNGV
Trigger: CACGCCGTTCCCTTTGCATCACCCAGTGTGGTGCCA...CCGGCAGGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp CCCGGCGGTGGCCCAGGCAGTGATGAGGTACTGAGCCAGGGCGATGGAGACCGGAACCAGAAACTCCTGTaGGCTGGTCTGTGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: PGGGPGSDEVLSQGDGDRNQKLL*AGLCAG
Trigger: CCCAGCACACAGACCAGCTCACAGGAGTTTCTGGTT...CCGGTCTCCATCGCCCTGGCTCAGTACCTCATCACTGCCTGGGCCACCGCCGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185507.7
CDS-3UTR TCA 90 bp GAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTGCTCTGCCGGATCTCGCTaGTCTTGCTGCCCTGGCGTC +
Preference number: 4 (lower is better)
Translates to: ETPWWSLLGQEGCGGSPCSAGSR*SCCPGV
Trigger: GACGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGA...GCAGGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp GGCCCCTGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCGCAGTGATGAGGTACTaGGCCAGGGCGATGGAGACC +
Preference number: 4 (lower is better)
Translates to: GPCPGAAILLEPWARNCPAVMRY*ARAMET
Trigger: GGTCTCCATCGCCCTGGCTCAGTACCTCATCACTGC...GGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCAGGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR GCA 90 bp GGCCCCTGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCGCGTGGCCTGAGAGCTaGTGGAGCTTGGTGACCTCT +
Preference number: 4 (lower is better)
Translates to: GPCPGAAILLEPWARNCPAWPES*WSLVTS
Trigger: AGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCACGC...GGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCAGGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR GCA 90 bp TGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGGTGTGTGCCCCCGACATCTaGCGGATCTCGCTGATCTTG +
Preference number: 4 (lower is better)
Translates to: CSHWPLPSWQCRPPSPAVCAPDI*RISLIL
Trigger: CAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACA...CACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000213201.2
CDS-3UTR CCA 90 bp TCTTGGCAGTGTAGGCCGCCAAGCCCGGCGGTGGCCCTGGGGAAGCAGGTGGTATGGCCTGAGAGCTGCTaGAGCTTGGTGACCTCTGCA +
Preference number: 4 (lower is better)
Translates to: SWQCRPPSPAVALGKQVVWPESC*SLVTSA
Trigger: TGCAGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCA...TACCACCTGCTTCCCCAGGGCCACCGCCGGGCTTGGCGGCCTACACTGCCAAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp GAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTGCGCAAAGGGAACGGCGTaGCCTGAGAGCTGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: ETPWWSLLGQEGCGGSPCAKGTA*PESCWS
Trigger: GCTCCAGCAGCTCTCAGGCCACGCCGTTCCCTTTGC...GCAGGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp TTGGGTTGCCCTCCCCCGGACAAGCCCAGCCAGTCTATTCCAGTCAAAAGGGTACGCCAAGCCCGGCGGTaGCCCTGGGGAAGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: LGCPPPDKPSQSIPVKRVRQARR*PWGSRW
Trigger: CCACCTGCTTCCCCAGGGCCACCGCCGGGCTTGGCG...TACCCTTTTGACTGGAATAGACTGGCTGGGCTTGTCCGGGGGAGGGCAACCCAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
3UTR CAA 72 bp GCCACACCTACAGGCAGGCAGAGCCCTCTCTTTGGGTaGCCCTCCCCCGGACAAGCCCAGCCAGTCTATTCC +
Preference number: 4 (lower is better)
Translates to: ATPTGRQSPLFG*PSPGQAQPVYS
Trigger: GGAATAGACTGGCTGGGCTTGTCCGGGGGAGGGCAACCCAAAGAGAGGGCTCTGCCTGCCTGTAGGTGTGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR TCA 90 bp CTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGTGGCGCACACACAGGATaGTGGCGTCAGGCACCCCGG +
Preference number: 4 (lower is better)
Translates to: LGQKLSPLRGGSPKMGQGGAHTG*WRQAPR
Trigger: CCGGGGTGCCTGACGCCATCATCCTGTGTGTGCGCC...ACCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp ACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGCGCACACACAGGATaGTGGCGTCAGGCACCCCGG +
Preference number: 4 (lower is better)
Translates to: TLGQKLSPLRGGSPKMGQGAHTG*WRQAPR
Trigger: CCGGGGTGCCTGACGCCATCATCCTGTGTGTGCGCC...CTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp CCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGGAACGGCGTGGCCTaGGAGCTGCTGGAGCTTGGT +
Preference number: 4 (lower is better)
Translates to: PWGCHTPRTLGQKLSPLRGNGVA*ELLELG
Trigger: ACCAAGCTCCAGCAGCTCTCAGGCCACGCCGTTCCC...TCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp TTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTGGGAACGGCGTGGCCTaGGAGCTGCTGGAGCTTGGT +
Preference number: 4 (lower is better)
Translates to: LRPHGGVSLGRKDVEAAPGNGVA*ELLELG
Trigger: ACCAAGCTCCAGCAGCTCTCAGGCCACGCCGTTCCC...AGGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp CGCTCCCCAGCACCCTCCGCTTGGTTCCCGATCTTAATATGTGCCCCCGACATCGGGAACGGCGTGGCCTaGGAGCTGCTGGAGCTTGGT +
Preference number: 4 (lower is better)
Translates to: RSPAPSAWFPILICAPDIGNGVA*ELLELG
Trigger: ACCAAGCTCCAGCAGCTCTCAGGCCACGCCGTTCCC...GATGTCGGGGGCACATATTAAGATCGGGAACCAAGCGGAGGGTGCTGGGGAGCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp GCCCAAAGGGATGGAGGGGACATGAGTAACCCCTCCCACAGCAGGGCTCCAGAGAGACCGGTGAGCCAGTaGTGGTCACATGCCGCTCCC +
Preference number: 4 (lower is better)
Translates to: AQRDGGDMSNPSHSRAPERPVSQ*WSHAAP
Trigger: GGGAGCGGCATGTGACCATCACTGGCTCACCGGTCT...CTCTGGAGCCCTGCTGTGGGAGGGGTTACTCATGTCCCCTCCATCCCTTTGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR GCA 90 bp TCCAGAGCACAGGAGGTGCTCCCTTCCACCCCAACCTGTGCTCCCCGCTGCCCAGTGAGCTGGTCTGTGTaGTGGGATCCAGTCCTGGCA +
Preference number: 4 (lower is better)
Translates to: SRAQEVLPSTPTCAPRCPVSWSV*WDPVLA
Trigger: TGCCAGGACTGGATCCCAGCACACAGACCAGCTCAC...TGGGCAGCGGGGAGCACAGGTTGGGGTGGAAGGGAGCACCTCCTGTGCTCTGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR GCA 90 bp CTGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCCCAGTGATGGTCACATaGCGCTCCCCAGCACCCTCC +
Preference number: 4 (lower is better)
Translates to: LPWGCHTPRTLGQKLSPLPVMVT*RSPAPS
Trigger: GGAGGGTGCTGGGGAGCGGCATGTGACCATCACTGG...GAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR GCA 90 bp GAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTGCGCTCCCATTGGCCGCTaGCATCTTGGCAGTGTAGGC +
Preference number: 4 (lower is better)
Translates to: ETPWWSLLGQEGCGGSPCAPIGR*HLGSVG
Trigger: GCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGC...GCAGGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp TCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGACGCTCTGTGGAATTTaGGAGCAGGTCCCCTGCCAC +
Preference number: 4 (lower is better)
Translates to: SCSHWPLPSWQCRPPSPATLCGI*EQVPCH
Trigger: GTGGCAGGGGACCTGCTCCCAAATTCCACAGAGCGT...CGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
CDS-3UTR CCA 90 bp GCCAGGGCGATGGAGACCGGTGAGCCAGTGATGGTCACATGCCGCTCCCCAGCATGGCCTGAGAGCTGCTaGAGCTTGGTGACCTCTGCA +
Preference number: 4 (lower is better)
Translates to: ARAMETGEPVMVTCRSPAWPESC*SLVTSA
Trigger: TGCAGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCA...TGCTGGGGAGCGGCATGTGACCATCACTGGCTCACCGGTCTCCATCGCCCTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp TCCAGAGCACAGGAGGTGCTCCCTTCCACCCCAACCTGTGCTCCCCGCTGCCCAAGCTGGTCTGTGTGCTaGGATCCAGTCCTGGCACCA +
Preference number: 4 (lower is better)
Translates to: SRAQEVLPSTPTCAPRCPSWSVC*DPVLAP
Trigger: TGGTGCCAGGACTGGATCCCAGCACACAGACCAGCT...TGGGCAGCGGGGAGCACAGGTTGGGGTGGAAGGGAGCACCTCCTGTGCTCTGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CCA 90 bp TCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGCTGATCTTGCTGCCCTaGCGTCCGATCACACAGCCA +
Preference number: 4 (lower is better)
Translates to: SCSHWPLPSWQCRPPSPALILLP*RPITQP
Trigger: TGGCTGTGTGATCGGACGCCAGGGCAGCAAGATCAG...CGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213201.2
CDS-3UTR CCA 90 bp CTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGAGTGGCGAGAAAGGGGTaGGCAGGTCTGCGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: LALLALETPWWSLLGQEGVARKG*AGLRGL
Trigger: CAGCCCCCGCAGACCTGCCCACCCCTTTCTCGCCAC...TCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
CDS-3UTR CCA 90 bp GCCCAAAGGGATGGAGGGGACATGAGTAACCCCTCCCACAGCAGGGCTCCAGAGTGGCCGCTGCCATCTTaGCAGTGTAGGCCGCCAAGC +
Preference number: 4 (lower is better)
Translates to: AQRDGGDMSNPSHSRAPEWPLPS*QCRPPS
Trigger: GCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCA...CTCTGGAGCCCTGCTGTGGGAGGGGTTACTCATGTCCCCTCCATCCCTTTGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR TCA 90 bp CCCTGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCAGGGAGAGGCTCGGATaGTACGGGATTGTGGCTCCT +
Preference number: 4 (lower is better)
Translates to: PCPGAAILLEPWARNCPLRERLG*YGIVAP
Trigger: AGGAGCCACAATCCCGTATCATCCGAGCCTCTCCCT...GAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp TCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGGTCACTGCTCCATACTaGCCCTGGACAGAGAAACCC +
Preference number: 4 (lower is better)
Translates to: SCSHWPLPSWQCRPPSPAVTAPY*PWTEKP
Trigger: GGGTTTCTCTGTCCAGGGTCAGTATGGAGCAGTGAC...CGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp GAGAGCCCCTGGCCATTCTCTGCATCCAAGCATAGGTCTGTAGAGGTGGGGCCCGCTGCTGGAGCTTGGTaGCCTCTGCAGGGGTCACTG +
Preference number: 4 (lower is better)
Translates to: ESPWPFSASKHRSVEVGPAAGAW*PLQGSL
Trigger: CAGTGACCCCTGCAGAGGTCACCAAGCTCCAGCAGC...GGGCCCCACCTCTACAGACCTATGCTTGGATGCAGAGAATGGCCAGGGGCTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp ATATGTGCCCCCGACATCTGCCGGATCTCGCTGATCTTGCTGCCCTGGCGTCCGTGGCACCACACTGGGTaGTGCAAAGGGAACGGCGTG +
Preference number: 4 (lower is better)
Translates to: ICAPDICRISLILLPWRPWHHTG*CKGNGV
Trigger: CACGCCGTTCCCTTTGCATCACCCAGTGTGGTGCCA...CGGACGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACATAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp CCAGAGAACTGCTCCAGAGCACAGGAGGTGCTCCCTTCCACCCCAACCTGTGCTTCTGCCGGATCTCGCTaGTCTTGCTGCCCTGGCGTC +
Preference number: 4 (lower is better)
Translates to: PENCSRAQEVLPSTPTCASAGSR*SCCPGV
Trigger: GACGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGA...AGCACAGGTTGGGGTGGAAGGGAGCACCTCCTGTGCTCTGGAGCAGTTCTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR TCA 90 bp ACCAGAGAACTGCTCCAGAGCACAGGAGGTGCTCCCTTCCACCCCAACCTGTGCAGACCGGTGAGCCAGTaGTGGTCACATGCCGCTCCC +
Preference number: 4 (lower is better)
Translates to: TRELLQSTGGAPFHPNLCRPVSQ*WSHAAP
Trigger: GGGAGCGGCATGTGACCATCACTGGCTCACCGGTCT...GCACAGGTTGGGGTGGAAGGGAGCACCTCCTGTGCTCTGGAGCAGTTCTCTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR GCA 90 bp TCCAGAGCACAGGAGGTGCTCCCTTCCACCCCAACCTGTGCTCCCCGCTGCCCAGAGCTTGGTGACCTCTaGAGGGGTCACTGCTCCATA +
Preference number: 4 (lower is better)
Translates to: SRAQEVLPSTPTCAPRCPELGDL*RGHCSI
Trigger: TATGGAGCAGTGACCCCTGCAGAGGTCACCAAGCTC...TGGGCAGCGGGGAGCACAGGTTGGGGTGGAAGGGAGCACCTCCTGTGCTCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR GCA 90 bp GAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTGCTGTGCCCCCGACATCTaGCGGATCTCGCTGATCTTG +
Preference number: 4 (lower is better)
Translates to: ETPWWSLLGQEGCGGSPCCAPDI*RISLIL
Trigger: CAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACA...GCAGGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR GCA 90 bp TGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGCCAGTGATGGTCACATaGCGCTCCCCAGCACCCTCC +
Preference number: 4 (lower is better)
Translates to: CVWHYWRLRPHGGVSLGRPVMVT*RSPAPS
Trigger: GGAGGGTGCTGGGGAGCGGCATGTGACCATCACTGG...CCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR GCA 90 bp GGCAGGGTAGGGGGTGCATCCATGCGTCTGGCATTACTGGCGCTTGAGACCCCAAGATGGCATAAGGTGTaGCCAGCAGGCCTGGGGGAG +
Preference number: 4 (lower is better)
Translates to: GRVGGASMRLALLALETPRWHKV*PAGLGE
Trigger: CTCCCCCAGGCCTGCTGGGCACACCTTATGCCATCT...TGGGGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGCACCCCCTACCCTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
CDS-3UTR GCA 90 bp CTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCGCTCCCATTGGCCGCTaGCATCTTGGCAGTGTAGGC +
Preference number: 4 (lower is better)
Translates to: LETPWWSLLGQEGCGGSPAPIGR*HLGSVG
Trigger: GCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGC...GGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp CCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCCTGCCACCTGCACCTaGGCTCCTGTAGTCTCTCGG +
Preference number: 4 (lower is better)
Translates to: PFSFLAPIGRCHLGSVGRPATCT*APVVSR
Trigger: CCGAGAGACTACAGGAGCCCAGGTGCAGGTGGCAGG...GCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
CDS-3UTR CCA 90 bp CCCTGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCACGCTCTGTGGAATTTaGGAGCAGGTCCCCTGCCAC +
Preference number: 4 (lower is better)
Translates to: PCPGAAILLEPWARNCPLTLCGI*EQVPCH
Trigger: GTGGCAGGGGACCTGCTCCCAAATTCCACAGAGCGT...GAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp CTCCAAAGATGGGGCAGGGTAGGGGGTGCATCCATGCGTCTGGCATTACTGGCGGCAAAGGGAACGGCGTaGCCTGAGAGCTGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: LQRWGRVGGASMRLALLAAKGTA*PESCWS
Trigger: GCTCCAGCAGCTCTCAGGCCACGCCGTTCCCTTTGC...CGCCAGTAATGCCAGACGCATGGATGCACCCCCTACCCTGCCCCATCTTTGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp CCAGAGAACTGCTCCAGAGCACAGGAGGTGCTCCCTTCCACCCCAACCTGTGCTGCAAAGGGAACGGCGTaGCCTGAGAGCTGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: PENCSRAQEVLPSTPTCAAKGTA*PESCWS
Trigger: GCTCCAGCAGCTCTCAGGCCACGCCGTTCCCTTTGC...AGCACAGGTTGGGGTGGAAGGGAGCACCTCCTGTGCTCTGGAGCAGTTCTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CCA 90 bp CCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCGCAAAGGGAACGGCGTaGCCTGAGAGCTGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: PFSFLAPIGRCHLGSVGRAKGTA*PESCWS
Trigger: GCTCCAGCAGCTCTCAGGCCACGCCGTTCCCTTTGC...GCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp GAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTGCGTCCTGGCACCACACTaGGTGATGCAAAGGGAACGG +
Preference number: 4 (lower is better)
Translates to: ETPWWSLLGQEGCGGSPCVLAPH*VMQRER
Trigger: CCGTTCCCTTTGCATCACCCAGTGTGGTGCCAGGAC...GCAGGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp CGCCCCTCACTCTCCTCCAATTCCCACTGGGACAGCAGGATGAAGCCCAAAGGGAGCCCTCCGAGATGGTaGTCCGGGCACTGCTCTGTT +
Preference number: 4 (lower is better)
Translates to: RPSLSSNSHWDSRMKPKGSPPRW*SGHCSV
Trigger: AACAGAGCAGTGCCCGGATCACCATCTCGGAGGGCT...CCCTTTGGGCTTCATCCTGCTGTCCCAGTGGGAATTGGAGGAGAGTGAGGGGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR TCA 90 bp CCAAAGATGGGGCAGGGTAGGGGGTGCATCCATGCGTCTGGCATTACTGGCGCTACTGGCTGGCAGGGATaGCAAGGCGCAAGGTCACTG +
Preference number: 4 (lower is better)
Translates to: PKMGQGRGCIHASGITGATGWQG*QGARSL
Trigger: CAGTGACCTTGCGCCTTGTCATCCCTGCCAGCCAGT...AGCGCCAGTAATGCCAGACGCATGGATGCACCCCCTACCCTGCCCCATCTTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR TCA 90 bp CGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCAGGGAGAGGCTCGGATaGTACGGGATTGTGGCTCCT +
Preference number: 4 (lower is better)
Translates to: RLRPHGGVSLGRKDVEAARERLG*YGIVAP
Trigger: AGGAGCCACAATCCCGTATCATCCGAGCCTCTCCCT...GGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp CTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGTGCTGCTGGAGCTTGGTaGCCTCTGCAGGGGTCACTG +
Preference number: 4 (lower is better)
Translates to: LGQKLSPLRGGSPKMGQGAAGAW*PLQGSL
Trigger: CAGTGACCCCTGCAGAGGTCACCAAGCTCCAGCAGC...ACCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp GGTGCATCCATGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCAGACCGGTGAGCCAGTaGTGGTCACATGCCGCTCCC +
Preference number: 4 (lower is better)
Translates to: GASMRLALLALETPWWSLRPVSQ*WSHAAP
Trigger: GGGAGCGGCATGTGACCATCACTGGCTCACCGGTCT...GAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp GTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGAGACCGGTGAGCCAGTaGTGGTCACATGCCGCTCCC +
Preference number: 4 (lower is better)
Translates to: VWHYWRLRPHGGVSLGRKRPVSQ*WSHAAP
Trigger: GGGAGCGGCATGTGACCATCACTGGCTCACCGGTCT...CTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp TGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGCAGTGATGAGGTACTaGGCCAGGGCGATGGAGACC +
Preference number: 4 (lower is better)
Translates to: CPGAAILLEPWARNCPLSAVMRY*ARAMET
Trigger: GGTCTCCATCGCCCTGGCTCAGTACCTCATCACTGC...TGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR GCA 90 bp CCCTGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCGAGCTTGGTGACCTCTaGAGGGGTCACTGCTCCATA +
Preference number: 4 (lower is better)
Translates to: PCPGAAILLEPWARNCPLELGDL*RGHCSI
Trigger: TATGGAGCAGTGACCCCTGCAGAGGTCACCAAGCTC...GAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR GCA 90 bp AGCCGGCCGGCCTCAGTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCGCGTGGCCTGAGAGCTaGTGGAGCTTGGTGACCTCT +
Preference number: 4 (lower is better)
Translates to: SRPASVGGEFLPFSFLAPAWPES*WSLVTS
Trigger: AGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCACGC...GGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTACTGAGGCCGGCCGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR GCA 90 bp CGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCTGTGCCCCCGACATCTaGCGGATCTCGCTGATCTTG +
Preference number: 4 (lower is better)
Translates to: RLRPHGGVSLGRKDVEAACAPDI*RISLIL
Trigger: CAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACA...GGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR GCA 90 bp ACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGCCAGTGATGGTCACATaGCGCTCCCCAGCACCCTCC +
Preference number: 4 (lower is better)
Translates to: TLGQKLSPLRGGSPKMGQPVMVT*RSPAPS
Trigger: GGAGGGTGCTGGGGAGCGGCATGTGACCATCACTGG...CTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR GCA 90 bp TTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTAGATGGCATAAGGTGTaGCCAGCAGGCCTGGGGGAG +
Preference number: 4 (lower is better)
Translates to: LRPHGGVSLGRKDVEAAPRWHKV*PAGLGE
Trigger: CTCCCCCAGGCCTGCTGGGCACACCTTATGCCATCT...AGGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
CDS-3UTR CCA 90 bp GGTGCATCCATGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCCTGCCACCTGCACCTaGGCTCCTGTAGTCTCTCGG +
Preference number: 4 (lower is better)
Translates to: GASMRLALLALETPWWSLPATCT*APVVSR
Trigger: CCGAGAGACTACAGGAGCCCAGGTGCAGGTGGCAGG...GAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp CTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGACCTGCCACCTGCACCTaGGCTCCTGTAGTCTCTCGG +
Preference number: 4 (lower is better)
Translates to: LALLALETPWWSLLGQEGPATCT*APVVSR
Trigger: CCGAGAGACTACAGGAGCCCAGGTGCAGGTGGCAGG...TCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp GCCAGGGCGATGGAGACCGGTGAGCCAGTGATGGTCACATGCCGCTCCCCAGCAGATGATACGGGATTGTaGCTCCTTTGGGTGGGGACT +
Preference number: 4 (lower is better)
Translates to: ARAMETGEPVMVTCRSPADDTGL*LLWVGT
Trigger: AGTCCCCACCCAAAGGAGCCACAATCCCGTATCATC...TGCTGGGGAGCGGCATGTGACCATCACTGGCTCACCGGTCTCCATCGCCCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp CCCTGGCCATTCTCTGCATCCAAGCATAGGTCTGTAGAGGTGGGGCCCCTGCCCTGGCCTGAGAGCTGCTaGAGCTTGGTGACCTCTGCA +
Preference number: 4 (lower is better)
Translates to: PWPFSASKHRSVEVGPLPWPESC*SLVTSA
Trigger: TGCAGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCA...GGGCAGGGGCCCCACCTCTACAGACCTATGCTTGGATGCAGAGAATGGCCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp CTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCGTCCTGGCACCACACTaGGTGATGCAAAGGGAACGG +
Preference number: 4 (lower is better)
Translates to: LALETPWWSLLGQEGCGGVLAPH*VMQRER
Trigger: CCGTTCCCTTTGCATCACCCAGTGTGGTGCCAGGAC...GCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp ATGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGTGGCCGCTGCCATCTTaGCAGTGTAGGCCGCCAAGC +
Preference number: 4 (lower is better)
Translates to: MRLALLALETPWWSLLGQWPLPS*QCRPPS
Trigger: GCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCA...CTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp CTGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCCTCCCTTCTTCCCAATaGTGCTGCCCACTTCCTTCC +
Preference number: 4 (lower is better)
Translates to: LPWGCHTPRTLGQKLSPLLPSSQ*CCPLPS
Trigger: GGAAGGAAGTGGGCAGCATCATTGGGAAGAAGGGAG...GAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR TCA 90 bp CTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGTGCACCCCGGACACAGTaGCAGCACGCTCTGTGGAAT +
Preference number: 4 (lower is better)
Translates to: LGQKLSPLRGGSPKMGQGAPRTQ*QHALWN
Trigger: ATTCCACAGAGCGTGCTGTCACTGTGTCCGGGGTGC...ACCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp GTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAGCACCCCGGACACAGTaGCAGCACGCTCTGTGGAAT +
Preference number: 4 (lower is better)
Translates to: VQLSCSHWPLPSWQCRPPAPRTQ*QHALWN
Trigger: ATTCCACAGAGCGTGCTGTCACTGTGTCCGGGGTGC...TGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
CDS-3UTR TCA 90 bp CTGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCGTCACTGCTCCATACTaGCCCTGGACAGAGAAACCC +
Preference number: 4 (lower is better)
Translates to: LPWGCHTPRTLGQKLSPLVTAPY*PWTEKP
Trigger: GGGTTTCTCTGTCCAGGGTCAGTATGGAGCAGTGAC...GAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp TCCGCTTGGTTCCCGATCTTAATATGTGCCCCCGACATCTGCCGGATCTCGCTGGCTGCTGGAGCTTGGTaGCCTCTGCAGGGGTCACTG +
Preference number: 4 (lower is better)
Translates to: SAWFPILICAPDICRISLAAGAW*PLQGSL
Trigger: CAGTGACCCCTGCAGAGGTCACCAAGCTCCAGCAGC...CAGCGAGATCCGGCAGATGTCGGGGGCACATATTAAGATCGGGAACCAAGCGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp ACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGGGGAACGGCGTGGCCTaGGAGCTGCTGGAGCTTGGT +
Preference number: 4 (lower is better)
Translates to: TPRTLGQKLSPLRGGSPKGNGVA*ELLELG
Trigger: ACCAAGCTCCAGCAGCTCTCAGGCCACGCCGTTCCC...CTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp GGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGGGGAACGGCGTGGCCTaGGAGCTGCTGGAGCTTGGT +
Preference number: 4 (lower is better)
Translates to: GRISAVQLSCSHWPLPSWGNGVA*ELLELG
Trigger: ACCAAGCTCCAGCAGCTCTCAGGCCACGCCGTTCCC...CCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp GGTGCATCCATGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCTGGCACCACACTGGGTaGTGCAAAGGGAACGGCGTG +
Preference number: 4 (lower is better)
Translates to: GASMRLALLALETPWWSLWHHTG*CKGNGV
Trigger: CACGCCGTTCCCTTTGCATCACCCAGTGTGGTGCCA...GAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp GTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCATGGCACCACACTGGGTaGTGCAAAGGGAACGGCGTG +
Preference number: 4 (lower is better)
Translates to: VQLSCSHWPLPSWQCRPPWHHTG*CKGNGV
Trigger: CACGCCGTTCCCTTTGCATCACCCAGTGTGGTGCCA...TGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp CTGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAACCAGAAACTCCTGTaGGCTGGTCTGTGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: LPWGCHTPRTLGQKLSPLNQKLL*AGLCAG
Trigger: CCCAGCACACAGACCAGCTCACAGGAGTTTCTGGTT...GAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp TGGGGCAGGGTAGGGGGTGCATCCATGCGTCTGGCATTACTGGCGCTTGAGACCAACCAGAAACTCCTGTaGGCTGGTCTGTGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: WGRVGGASMRLALLALETNQKLL*AGLCAG
Trigger: CCCAGCACACAGACCAGCTCACAGGAGTTTCTGGTT...GGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGCACCCCCTACCCTGCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp GCATCCATGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTTCTGCCGGATCTCGCTaGTCTTGCTGCCCTGGCGTC +
Preference number: 4 (lower is better)
Translates to: ASMRLALLALETPWWSLLSAGSR*SCCPGV
Trigger: GACGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGA...AAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp GTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGGCGATGGAGACCGGTaGGCCAGTGATGGTCACATG +
Preference number: 4 (lower is better)
Translates to: VWHYWRLRPHGGVSLGRKGDGDR*ASDGHM
Trigger: CATGTGACCATCACTGGCTCACCGGTCTCCATCGCC...CTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp TGGGGCAGGGTAGGGGGTGCATCCATGCGTCTGGCATTACTGGCGCTTGAGACCTCTGCCGGATCTCGCTaGTCTTGCTGCCATCATTGG +
Preference number: 4 (lower is better)
Translates to: WGRVGGASMRLALLALETSAGSR*SCCHHW
Trigger: CCAATGATGGCAGCAAGATCAGCGAGATCCGGCAGA...GGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGCACCCCCTACCCTGCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000188396.2
CDS-3UTR GCA 90 bp CTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGAGCTTGGTGACCTCTaGAGGGGTCACTGCTCCATA +
Preference number: 4 (lower is better)
Translates to: LSCSHWPLPSWQCRPPSPELGDL*RGHCSI
Trigger: TATGGAGCAGTGACCCCTGCAGAGGTCACCAAGCTC...CGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR GCA 90 bp CGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCGAGCTTGGTGACCTCTaGAGGGGTCACTGCTCCATA +
Preference number: 4 (lower is better)
Translates to: RLRPHGGVSLGRKDVEAAELGDL*RGHCSI
Trigger: TATGGAGCAGTGACCCCTGCAGAGGTCACCAAGCTC...GGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR GCA 90 bp CTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGAGCGTGGCCTGAGAGCTaGTGGAGCTTGGTGACCTCT +
Preference number: 4 (lower is better)
Translates to: LALLALETPWWSLLGQEGAWPES*WSLVTS
Trigger: AGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCACGC...TCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR GCA 90 bp GGTGCATCCATGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCGCGTGGCCTGAGAGCTaGTGGAGCTTGGTGACCTCT +
Preference number: 4 (lower is better)
Translates to: GASMRLALLALETPWWSLAWPES*WSLVTS
Trigger: AGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCACGC...GAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR GCA 90 bp GCACCCTCCGCTTGGTTCCCGATCTTAATATGTGCCCCCGACATCTGCCGGATCGCGTGGCCTGAGAGCTaGTGGAGCTTGGTGACCTCT +
Preference number: 4 (lower is better)
Translates to: APSAWFPILICAPDICRIAWPES*WSLVTS
Trigger: AGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCACGC...GATCCGGCAGATGTCGGGGGCACATATTAAGATCGGGAACCAAGCGGAGGGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
CDS-3UTR GCA 90 bp CCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGGTGAGCTGGTCTGTGTaGTGGGATCCAGTCCTGGCA +
Preference number: 4 (lower is better)
Translates to: PGPETVPSQRRISKDGAGVSWSV*WDPVLA
Trigger: TGCCAGGACTGGATCCCAGCACACAGACCAGCTCAC...CCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp CCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAATCATGGAGACCGCGTaGAAGACGGCAGCCGTAGAG +
Preference number: 4 (lower is better)
Translates to: PWGCHTPRTLGQKLSPLRIMETA*KTAAVE
Trigger: CTCTACGGCTGCCGTCTTCCACGCGGTCTCCATGAT...TCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR CCA 90 bp AGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCACGCTCTGTGGAATTTaGGAGCAGGTCCCCTGCCAC +
Preference number: 4 (lower is better)
Translates to: SFLAPIGRCHLGSVGRQATLCGI*EQVPCH
Trigger: GTGGCAGGGGACCTGCTCCCAAATTCCACAGAGCGT...GGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
CDS-3UTR CCA 90 bp TGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGGTGATAACAGCACAGATCTaGCGCACACACAGGATGATG +
Preference number: 4 (lower is better)
Translates to: CSHWPLPSWQCRPPSPAVITAQI*RTHRMM
Trigger: CATCATCCTGTGTGTGCGCCAGATCTGTGCTGTTAT...CACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
CDS-3UTR CCA 90 bp GAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTGCGATGATACGGGATTGTaGCTCCTTTGGGTGGGGACT +
Preference number: 4 (lower is better)
Translates to: ETPWWSLLGQEGCGGSPCDDTGL*LLWVGT
Trigger: AGTCCCCACCCAAAGGAGCCACAATCCCGTATCATC...GCAGGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp TCCGCTTGGTTCCCGATCTTAATATGTGCCCCCGACATCTGCCGGATCTCGCTGGCAAAGGGAACGGCGTaGCCTGAGAGCTGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: SAWFPILICAPDICRISLAKGTA*PESCWS
Trigger: GCTCCAGCAGCTCTCAGGCCACGCCGTTCCCTTTGC...CAGCGAGATCCGGCAGATGTCGGGGGCACATATTAAGATCGGGAACCAAGCGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp CGCCCCTCACTCTCCTCCAATTCCCACTGGGACAGCAGGATGAAGCCCAAAGGGGTCCTGGCACCACACTaGGTGATGCAAAGGGAACGG +
Preference number: 4 (lower is better)
Translates to: RPSLSSNSHWDSRMKPKGVLAPH*VMQRER
Trigger: CCGTTCCCTTTGCATCACCCAGTGTGGTGCCAGGAC...CCCTTTGGGCTTCATCCTGCTGTCCCAGTGGGAATTGGAGGAGAGTGAGGGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR CCA 90 bp CCAAAGATGGGGCAGGGTAGGGGGTGCATCCATGCGTCTGGCATTACTGGCGCTAGCTGGTCTGTGTGCTaGGATCCAGTCCTGGCACCA +
Preference number: 4 (lower is better)
Translates to: PKMGQGRGCIHASGITGASWSVC*DPVLAP
Trigger: TGGTGCCAGGACTGGATCCCAGCACACAGACCAGCT...AGCGCCAGTAATGCCAGACGCATGGATGCACCCCCTACCCTGCCCCATCTTTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp GACATCTGCCGGATCTCGCTGATCTTGCTGCCCTGGCGTCCGATCACACAGCCAAGCTGGTCTGTGTGCTaGGATCCAGTCCTGGCACCA +
Preference number: 4 (lower is better)
Translates to: DICRISLILLPWRPITQPSWSVC*DPVLAP
Trigger: TGGTGCCAGGACTGGATCCCAGCACACAGACCAGCT...TGGCTGTGTGATCGGACGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGATGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp ACCAGAGAACTGCTCCAGAGCACAGGAGGTGCTCCCTTCCACCCCAACCTGTGCCTGATCTTGCTGCCCTaGCGTCCGATCACACAGCCA +
Preference number: 4 (lower is better)
Translates to: TRELLQSTGGAPFHPNLCLILLP*RPITQP
Trigger: TGGCTGTGTGATCGGACGCCAGGGCAGCAAGATCAG...GCACAGGTTGGGGTGGAAGGGAGCACCTCCTGTGCTCTGGAGCAGTTCTCTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CCA 90 bp CTCCAAAGATGGGGCAGGGTAGGGGGTGCATCCATGCGTCTGGCATTACTGGCGCTGATCTTGCTGCCCTaGCGTCCGATCACACAGCCA +
Preference number: 4 (lower is better)
Translates to: LQRWGRVGGASMRLALLALILLP*RPITQP
Trigger: TGGCTGTGTGATCGGACGCCAGGGCAGCAAGATCAG...CGCCAGTAATGCCAGACGCATGGATGCACCCCCTACCCTGCCCCATCTTTGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp GCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCTGGCCGCTGCCATCTTaGCAGTGTAGGCCGCCAAGC +
Preference number: 4 (lower is better)
Translates to: AILLEPWARNCPLSEEDLWPLPS*QCRPPS
Trigger: GCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCA...GAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp CCCTGGCCATTCTCTGCATCCAAGCATAGGTCTGTAGAGGTGGGGCCCCTGCCCCTTTCTTGCTCCCATTaGCCGCTGCCATCTTGGCAG +
Preference number: 4 (lower is better)
Translates to: PWPFSASKHRSVEVGPLPLSCSH*PLPSWQ
Trigger: CTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAG...GGGCAGGGGCCCCACCTCTACAGACCTATGCTTGGATGCAGAGAATGGCCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp GCCTCAGTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCGCACCCCGGACACAGTaGCAGCACGCTCTGTGGAAT +
Preference number: 4 (lower is better)
Translates to: ASVGGEFLPFSFLAPIGRAPRTQ*QHALWN
Trigger: ATTCCACAGAGCGTGCTGTCACTGTGTCCGGGGTGC...GCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTACTGAGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
CDS-3UTR TCA 90 bp ATACCTAAAGGAAAGGAGGAGCTGAGGAGCACCAGAGAACTGCTCCAGAGCACAGGCGCACACACAGGATaGTGGCGTCAGGCACCCCGG +
Preference number: 4 (lower is better)
Translates to: IPKGKEELRSTRELLQSTGAHTG*WRQAPR
Trigger: CCGGGGTGCCTGACGCCATCATCCTGTGTGTGCGCC...TGTGCTCTGGAGCAGTTCTCTGGTGCTCCTCAGCTCCTCCTTTCCTTTAGGTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR TCA 90 bp TGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGTCACTGCTCCATACTaGCCCTGGACAGAGAAACCC +
Preference number: 4 (lower is better)
Translates to: CPGAAILLEPWARNCPLSVTAPY*PWTEKP
Trigger: GGGTTTCTCTGTCCAGGGTCAGTATGGAGCAGTGAC...TGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp GCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTTGGCACCACACTGGGTaGTGCAAAGGGAACGGCGTG +
Preference number: 4 (lower is better)
Translates to: ALLALETPWWSLLGQEGCWHHTG*CKGNGV
Trigger: CACGCCGTTCCCTTTGCATCACCCAGTGTGGTGCCA...ACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp AACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGCGATGGAGACCGGTaGGCCAGTGATGGTCACATG +
Preference number: 4 (lower is better)
Translates to: NPGPETVPSQRRISKDGAGDGDR*ASDGHM
Trigger: CATGTGACCATCACTGGCTCACCGGTCTCCATCGCC...TGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp GCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGCAGTGATGAGGTACTaGGCCAGGGCGATGGAGACC +
Preference number: 4 (lower is better)
Translates to: ALLALETPWWSLLGQEGCAVMRY*ARAMET
Trigger: GGTCTCCATCGCCCTGGCTCAGTACCTCATCACTGC...ACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR GCA 90 bp CCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGGAGGTCTGGAGACACTaGCACCATTTGCAGGAGCAG +
Preference number: 4 (lower is better)
Translates to: PGPETVPSQRRISKDGAGEVWRH*HHLQEQ
Trigger: CTGCTCCTGCAAATGGTGGCAGTGTCTCCAGACCTC...CCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR GCA 90 bp CGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAACTCTGCAGGGGTCACTaGTCCATACTGACCCTGGAC +
Preference number: 4 (lower is better)
Translates to: RLALLALETPWWSLLGQELCRGH*SILTLD
Trigger: GTCCAGGGTCAGTATGGAGCAGTGACCCCTGCAGAG...TTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR GCA 90 bp TGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGCTTGGTGACCTCTaGAGGGGTCACTGCTCCATA +
Preference number: 4 (lower is better)
Translates to: CPGAAILLEPWARNCPLSELGDL*RGHCSI
Trigger: TATGGAGCAGTGACCCCTGCAGAGGTCACCAAGCTC...TGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR GCA 90 bp AATATGTGCCCCCGACATCTGCCGGATCTCGCTGATCTTGCTGCCCTGGCGTCCGAGCTTGGTGACCTCTaGAGGGGTCACTGCTCCATA +
Preference number: 4 (lower is better)
Translates to: NMCPRHLPDLADLAALASELGDL*RGHCSI
Trigger: TATGGAGCAGTGACCCCTGCAGAGGTCACCAAGCTC...GGACGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACATATT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
CDS-3UTR GCA 90 bp TTAATATGTGCCCCCGACATCTGCCGGATCTCGCTGATCTTGCTGCCCTGGCGTGCGTGGCCTGAGAGCTaGTGGAGCTTGGTGACCTCT +
Preference number: 4 (lower is better)
Translates to: LICAPDICRISLILLPWRAWPES*WSLVTS
Trigger: AGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCACGC...ACGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACATATTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
CDS-3UTR GCA 90 bp GGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGTAGGGTGAGCTGGTCTGTGTaGTGGGATCCAGTCCTGGCA +
Preference number: 4 (lower is better)
Translates to: GQKLSPLRGGSPKMGQGRVSWSV*WDPVLA
Trigger: TGCCAGGACTGGATCCCAGCACACAGACCAGCTCAC...CCTACCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR GCA 90 bp GGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGTAGGTGTGCCCCCGACATCTaGCGGATCTCGCTGATCTTG +
Preference number: 4 (lower is better)
Translates to: GQKLSPLRGGSPKMGQGRCAPDI*RISLIL
Trigger: CAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACA...CCTACCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp TCCAGAGCACAGGAGGTGCTCCCTTCCACCCCAACCTGTGCTCCCCGCTGCCCAATAACAGCACAGATCTaGCGCACACACAGGATGATG +
Preference number: 4 (lower is better)
Translates to: SRAQEVLPSTPTCAPRCPITAQI*RTHRMM
Trigger: CATCATCCTGTGTGTGCGCCAGATCTGTGCTGTTAT...TGGGCAGCGGGGAGCACAGGTTGGGGTGGAAGGGAGCACCTCCTGTGCTCTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CCA 90 bp TGGGGCAGGGTAGGGGGTGCATCCATGCGTCTGGCATTACTGGCGCTTGAGACCTGTGGCTCCTTTGGGTaGGGACTCCAGAATAACAGC +
Preference number: 4 (lower is better)
Translates to: WGRVGGASMRLALLALETCGSFG*GLQNNS
Trigger: GCTGTTATTCTGGAGTCCCCACCCAAAGGAGCCACA...GGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGCACCCCCTACCCTGCCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp GTCACATGCCGCTCCCCAGCACCCTCCGCTTGGTTCCCGATCTTAATATGTGCCTGGCCTGAGAGCTGCTaGAGCTTGGTGACCTCTGCA +
Preference number: 4 (lower is better)
Translates to: VTCRSPAPSAWFPILICAWPESC*SLVTSA
Trigger: TGCAGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCA...GGCACATATTAAGATCGGGAACCAAGCGGAGGGTGCTGGGGAGCGGCATGTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp GTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGTCCTGGCACCACACTaGGTGATGCAAAGGGAACGG +
Preference number: 4 (lower is better)
Translates to: VWHYWRLRPHGGVSLGRKVLAPH*VMQRER
Trigger: CCGTTCCCTTTGCATCACCCAGTGTGGTGCCAGGAC...CTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp CTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCGAAACTCCTGTGAGCTaGTCTGTGTGCTGGGATCCA +
Preference number: 4 (lower is better)
Translates to: LETPWWSLLGQEGCGGSPETPVS*SVCWDP
Trigger: TGGATCCCAGCACACAGACCAGCTCACAGGAGTTTC...GGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp CCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGCTTTCTTGCTCCCATTaGCCGCTGCCATCTTGGCAG +
Preference number: 4 (lower is better)
Translates to: PGPETVPSQRRISKDGAGLSCSH*PLPSWQ
Trigger: CTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAG...CCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp CCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGCTTTCTTGCTCCCATTaGCCGCTGCCATCTTGGCAG +
Preference number: 4 (lower is better)
Translates to: PGAAILLEPWARNCPLSELSCSH*PLPSWQ
Trigger: CTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAG...CTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp CCTAAAGGAAAGGAGGAGCTGAGGAGCACCAGAGAACTGCTCCAGAGCACAGGAGCACCCCGGACACAGTaGCAGCACGCTCTGTGGAAT +
Preference number: 4 (lower is better)
Translates to: PKGKEELRSTRELLQSTGAPRTQ*QHALWN
Trigger: ATTCCACAGAGCGTGCTGTCACTGTGTCCGGGGTGC...TCCTGTGCTCTGGAGCAGTTCTCTGGTGCTCCTCAGCTCCTCCTTTCCTTTAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR TCA 90 bp GCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTAGGGAGAGGCTCGGATaGTACGGGATTGTGGCTCCT +
Preference number: 4 (lower is better)
Translates to: ALLALETPWWSLLGQEGCRERLG*YGIVAP
Trigger: AGGAGCCACAATCCCGTATCATCCGAGCCTCTCCCT...ACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp GGTGCATCCATGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCGTCACTGCTCCATACTaGCCCTGGACAGAGAAACCC +
Preference number: 4 (lower is better)
Translates to: GASMRLALLALETPWWSLVTAPY*PWTEKP
Trigger: GGGTTTCTCTGTCCAGGGTCAGTATGGAGCAGTGAC...GAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp TACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGAACCAGAAACTCCTGTaGGCTGGTCTGTGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: YWRLRPHGGVSLGRKDVENQKLL*AGLCAG
Trigger: CCCAGCACACAGACCAGCTCACAGGAGTTTCTGGTT...CTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp GAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTTCTGCCGGATCTCGCTaGTCTTGCTGCCCTGGCGTC +
Preference number: 4 (lower is better)
Translates to: EFLPFSFLAPIGRCHLGSSAGSR*SCCPGV
Trigger: GACGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGA...ACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213201.2
CDS-3UTR GCA 90 bp TGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGGACACTGCCACCATTTaGAGGAGCAGCACAAAGGTC +
Preference number: 4 (lower is better)
Translates to: CVWHYWRLRPHGGVSLGRDTATI*RSSTKV
Trigger: GACCTTTGTGCTGCTCCTGCAAATGGTGGCAGTGTC...CCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR GCA 90 bp AGCAGGGCTCCAGAGAGCCCCTGGCCATTCTCTGCATCCAAGCATAGGTCTGTACTCTGCAGGGGTCACTaGTCCATACTGACCCTGGAC +
Preference number: 4 (lower is better)
Translates to: SRAPESPWPFSASKHRSVLCRGH*SILTLD
Trigger: GTCCAGGGTCAGTATGGAGCAGTGACCCCTGCAGAG...TACAGACCTATGCTTGGATGCAGAGAATGGCCAGGGGCTCTCTGGAGCCCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR GCA 90 bp ACCCTCCGCTTGGTTCCCGATCTTAATATGTGCCCCCGACATCTGCCGGATCTCCTCTGCAGGGGTCACTaGTCCATACTGACCCTGGAC +
Preference number: 4 (lower is better)
Translates to: TLRLVPDLNMCPRHLPDLLCRGH*SILTLD
Trigger: GTCCAGGGTCAGTATGGAGCAGTGACCCCTGCAGAG...GAGATCCGGCAGATGTCGGGGGCACATATTAAGATCGGGAACCAAGCGGAGGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
CDS-3UTR GCA 90 bp GCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGTGAGCTGGTCTGTGTaGTGGGATCCAGTCCTGGCA +
Preference number: 4 (lower is better)
Translates to: ALLALETPWWSLLGQEGCVSWSV*WDPVLA
Trigger: TGCCAGGACTGGATCCCAGCACACAGACCAGCTCAC...ACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR GCA 90 bp GCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGTGAGCTGGTCTGTGTaGTGGGATCCAGTCCTGAGG +
Preference number: 4 (lower is better)
Translates to: ALLALETPWWSLLGQEGCVSWSV*WDPVLR
Trigger: CCTCAGGACTGGATCCCAGCACACAGACCAGCTCAC...ACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185507.7
CDS-3UTR CCA 90 bp TTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAACGCTCTGTGGAATTTaGGAGCAGGTCCCCTGCCAC +
Preference number: 4 (lower is better)
Translates to: LLALETPWWSLLGQEGCGTLCGI*EQVPCH
Trigger: GTGGCAGGGGACCTGCTCCCAAATTCCACAGAGCGT...TCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp CCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGTGTGGCTCCTTTGGGTaGGGACTCCAGAATAACAGC +
Preference number: 4 (lower is better)
Translates to: PGPETVPSQRRISKDGAGCGSFG*GLQNNS
Trigger: GCTGTTATTCTGGAGTCCCCACCCAAAGGAGCCACA...CCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp ACCAGAGAACTGCTCCAGAGCACAGGAGGTGCTCCCTTCCACCCCAACCTGTGCTGTGGCTCCTTTGGGTaGGGACTCCAGAATAACAGC +
Preference number: 4 (lower is better)
Translates to: TRELLQSTGGAPFHPNLCCGSFG*GLQNNS
Trigger: GCTGTTATTCTGGAGTCCCCACCCAAAGGAGCCACA...GCACAGGTTGGGGTGGAAGGGAGCACCTCCTGTGCTCTGGAGCAGTTCTCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CCA 90 bp AGCCGGCCGGCCTCAGTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCTGTGGCTCCTTTGGGTaGGGACTCCAGAATAACAGC +
Preference number: 4 (lower is better)
Translates to: SRPASVGGEFLPFSFLAPCGSFG*GLQNNS
Trigger: GCTGTTATTCTGGAGTCCCCACCCAAAGGAGCCACA...GGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTACTGAGGCCGGCCGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp AGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCTGTGGCTCCTTTGGGTaGGGACTCCAGAATAACAGC +
Preference number: 4 (lower is better)
Translates to: SFLAPIGRCHLGSVGRQACGSFG*GLQNNS
Trigger: GCTGTTATTCTGGAGTCCCCACCCAAAGGAGCCACA...GGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp GCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCAGCTGGTCTGTGTGCTaGGATCCAGTCCTGGCACCA +
Preference number: 4 (lower is better)
Translates to: AILLEPWARNCPLSEEDLSWSVC*DPVLAP
Trigger: TGGTGCCAGGACTGGATCCCAGCACACAGACCAGCT...GAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp TGGGGCAGGGTAGGGGGTGCATCCATGCGTCTGGCATTACTGGCGCTTGAGACCCCAGCACCCTCCGCTTaGTTCCCGATCTTAATATGT +
Preference number: 4 (lower is better)
Translates to: WGRVGGASMRLALLALETPAPSA*FPILIC
Trigger: ACATATTAAGATCGGGAACCAAGCGGAGGGTGCTGG...GGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGCACCCCCTACCCTGCCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp CTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCCCAGCACCCTCCGCTTaGTTCCCGATCTTAATATGT +
Preference number: 4 (lower is better)
Translates to: LETPWWSLLGQEGCGGSPPAPSA*FPILIC
Trigger: ACATATTAAGATCGGGAACCAAGCGGAGGGTGCTGG...GGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp CCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAAGTTGGAGAGGGAGATaGCATAAGGTGTGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: PWGCHTPRTLGQKLSPLRSWRGR*HKVCPA
Trigger: TGCTGGGCACACCTTATGCCATCTCCCTCTCCAACT...TCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
CDS-3UTR CCA 90 bp CCAAAGATGGGGCAGGGTAGGGGGTGCATCCATGCGTCTGGCATTACTGGCGCTAGTTGGAGAGGGAGATaGCATAAGGTGTGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: PKMGQGRGCIHASGITGASWRGR*HKVCPA
Trigger: TGCTGGGCACACCTTATGCCATCTCCCTCTCCAACT...AGCGCCAGTAATGCCAGACGCATGGATGCACCCCCTACCCTGCCCCATCTTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
CDS-3UTR TCA 90 bp TCAGTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCAGGGAGAGGCTCGGATaGTACGGGATTGTGGCTCCT +
Preference number: 4 (lower is better)
Translates to: SVGGEFLPFSFLAPIGRCRERLG*YGIVAP
Trigger: AGGAGCCACAATCCCGTATCATCCGAGCCTCTCCCT...GCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTACTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp GGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGAGGGAGAGGCTCGGATaGTACGGGATTGTGGCTCCT +
Preference number: 4 (lower is better)
Translates to: GRISAVQLSCSHWPLPSWRERLG*YGIVAP
Trigger: AGGAGCCACAATCCCGTATCATCCGAGCCTCTCCCT...CCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp GGACAAGCCCAGCCAGTCTATTCCAGTCAAAAGGGTATCAGTAGAAGCAGCAGGGCTGCTGGAGCTTGGTaGCCTCTGCAGGGGTCACTG +
Preference number: 4 (lower is better)
Translates to: GQAQPVYSSQKGISRSSRAAGAW*PLQGSL
Trigger: CAGTGACCCCTGCAGAGGTCACCAAGCTCCAGCAGC...CCTGCTGCTTCTACTGATACCCTTTTGACTGGAATAGACTGGCTGGGCTTGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR TCA 90 bp ATACCTAAAGGAAAGGAGGAGCTGAGGAGCACCAGAGAACTGCTCCAGAGCACAGCTGCTGGAGCTTGGTaGCCTCTGCAGGGGTCACTG +
Preference number: 4 (lower is better)
Translates to: IPKGKEELRSTRELLQSTAAGAW*PLQGSL
Trigger: CAGTGACCCCTGCAGAGGTCACCAAGCTCCAGCAGC...TGTGCTCTGGAGCAGTTCTCTGGTGCTCCTCAGCTCCTCCTTTCCTTTAGGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR TCA 90 bp ACCCTCCGCTTGGTTCCCGATCTTAATATGTGCCCCCGACATCTGCCGGATCTCAACCAGAAACTCCTGTaGGCTGGTCTGTGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: TLRLVPDLNMCPRHLPDLNQKLL*AGLCAG
Trigger: CCCAGCACACAGACCAGCTCACAGGAGTTTCTGGTT...GAGATCCGGCAGATGTCGGGGGCACATATTAAGATCGGGAACCAAGCGGAGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
CDS-3UTR GCA 90 bp CTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGTCCCGATCTTAATATGTaGCCCCGACATCTGCCGGAT +
Preference number: 4 (lower is better)
Translates to: LGQKLSPLRGGSPKMGQGPDLNM*PRHLPD
Trigger: ATCCGGCAGATGTCGGGGGCACATATTAAGATCGGG...ACCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp CTCACTCTCCTCCAATTCCCACTGGGACAGCAGGATGAAGCCCAAAGGGATGGATGGCCTGAGAGCTGCTaGAGCTTGGTGACCTCTGCA +
Preference number: 4 (lower is better)
Translates to: LTLLQFPLGQQDEAQRDGWPESC*SLVTSA
Trigger: TGCAGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCA...TCCATCCCTTTGGGCTTCATCCTGCTGTCCCAGTGGGAATTGGAGGAGAGTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR CCA 90 bp ACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGTGGCCTGAGAGCTGCTaGAGCTTGGTGACCTCTGCA +
Preference number: 4 (lower is better)
Translates to: TPRTLGQKLSPLRGGSPKWPESC*SLVTSA
Trigger: TGCAGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCA...CTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp CTCACTCTCCTCCAATTCCCACTGGGACAGCAGGATGAAGCCCAAAGGGATGGAAGCTGGTCTGTGTGCTaGGATCCAGTCCTGGCACCA +
Preference number: 4 (lower is better)
Translates to: LTLLQFPLGQQDEAQRDGSWSVC*DPVLAP
Trigger: TGGTGCCAGGACTGGATCCCAGCACACAGACCAGCT...TCCATCCCTTTGGGCTTCATCCTGCTGTCCCAGTGGGAATTGGAGGAGAGTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR CCA 90 bp ACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGAAACTCCTGTGAGCTaGTCTGTGTGCTGGGATCCA +
Preference number: 4 (lower is better)
Translates to: TLGQKLSPLRGGSPKMGQETPVS*SVCWDP
Trigger: TGGATCCCAGCACACAGACCAGCTCACAGGAGTTTC...CTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp CTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGTGAAACTCCTGTGAGCTaGTCTGTGTGCTGGGATCCA +
Preference number: 4 (lower is better)
Translates to: LGQKLSPLRGGSPKMGQGETPVS*SVCWDP
Trigger: TGGATCCCAGCACACAGACCAGCTCACAGGAGTTTC...ACCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp TCAGTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCGTCACTGCTCCATACTaGCCCTGGACAGAGAAACCC +
Preference number: 4 (lower is better)
Translates to: SVGGEFLPFSFLAPIGRCVTAPY*PWTEKP
Trigger: GGGTTTCTCTGTCCAGGGTCAGTATGGAGCAGTGAC...GCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTACTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp GTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATGTCACTGCTCCATACTaGCCCTGGACAGAGAAACCC +
Preference number: 4 (lower is better)
Translates to: VGGEFLPFSFLAPIGRCHVTAPY*PWTEKP
Trigger: GGGTTTCTCTGTCCAGGGTCAGTATGGAGCAGTGAC...ATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp AGAATACCTAAAGGAAAGGAGGAGCTGAGGAGCACCAGAGAACTGCTCCAGAGCTGGCACCACACTGGGTaGTGCAAAGGGAACGGCGTG +
Preference number: 4 (lower is better)
Translates to: RIPKGKEELRSTRELLQSWHHTG*CKGNGV
Trigger: CACGCCGTTCCCTTTGCATCACCCAGTGTGGTGCCA...GCTCTGGAGCAGTTCTCTGGTGCTCCTCAGCTCCTCCTTTCCTTTAGGTATTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR TCA 90 bp ATACCTAAAGGAAAGGAGGAGCTGAGGAGCACCAGAGAACTGCTCCAGAGCACAGCAGTGATGAGGTACTaGGCCAGGGCGATGGAGACC +
Preference number: 4 (lower is better)
Translates to: IPKGKEELRSTRELLQSTAVMRY*ARAMET
Trigger: GGTCTCCATCGCCCTGGCTCAGTACCTCATCACTGC...TGTGCTCTGGAGCAGTTCTCTGGTGCTCCTCAGCTCCTCCTTTCCTTTAGGTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR GCA 90 bp AGAATACCTAAAGGAAAGGAGGAGCTGAGGAGCACCAGAGAACTGCTCCAGAGCGCGTGGCCTGAGAGCTaGTGGAGCTTGGTGACCTCT +
Preference number: 4 (lower is better)
Translates to: RIPKGKEELRSTRELLQSAWPES*WSLVTS
Trigger: AGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCACGC...GCTCTGGAGCAGTTCTCTGGTGCTCCTCAGCTCCTCCTTTCCTTTAGGTATTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR GCA 90 bp GCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCCCGATCTTAATATGTaGCCCCGACATCTGCCGGAT +
Preference number: 4 (lower is better)
Translates to: AILLEPWARNCPLSEEDLPDLNM*PRHLPD
Trigger: ATCCGGCAGATGTCGGGGGCACATATTAAGATCGGG...GAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR GCA 90 bp GGGAGGGAGGGCAGAAACCACAGGCAGACACAAGACAAGTTAAGGGGAAAAATACCAGTGATGGTCACATaGCGCTCCCCAGCACCCTCC +
Preference number: 4 (lower is better)
Translates to: GREGRNHRQTQDKLRGKIPVMVT*RSPAPS
Trigger: GGAGGGTGCTGGGGAGCGGCATGTGACCATCACTGG...TATTTTTCCCCTTAACTTGTCTTGTGTCTGCCTGTGGTTTCTGCCCTCCCTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CCA 90 bp GCATCCATGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGATGATACGGGATTGTaGCTCCTTTGGGTGGGGACT +
Preference number: 4 (lower is better)
Translates to: ASMRLALLALETPWWSLLDDTGL*LLWVGT
Trigger: AGTCCCCACCCAAAGGAGCCACAATCCCGTATCATC...AAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR TCA 90 bp ACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGTCTCTCGGATCTCCTTaGTTTTGGTGCCTGCCTTCC +
Preference number: 4 (lower is better)
Translates to: TPRTLGQKLSPLRGGSPKSLGSP*FWCLPS
Trigger: GGAAGGCAGGCACCAAAATCAAGGAGATCCGAGAGA...CTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp AGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTCTCTCGGATCTCCTTaGTTTTGGTGCCTGCCTTCC +
Preference number: 4 (lower is better)
Translates to: RGRISAVQLSCSHWPLPSSLGSP*FWCLPS
Trigger: GGAAGGCAGGCACCAAAATCAAGGAGATCCGAGAGA...AGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
CDS-3UTR GCA 90 bp GAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGAGCTTGGTGACCTCTaGAGGGGTCACTGCTCCATA +
Preference number: 4 (lower is better)
Translates to: ENFCRSAFLLPLAAAILAELGDL*RGHCSI
Trigger: TATGGAGCAGTGACCCCTGCAGAGGTCACCAAGCTC...TGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR GCA 90 bp GGACAAGCCCAGCCAGTCTATTCCAGTCAAAAGGGTATCAGTAGAAGCAGCAGGGTGAGCTGGTCTGTGTaGTGGGATCCAGTCCTGGCA +
Preference number: 4 (lower is better)
Translates to: GQAQPVYSSQKGISRSSRVSWSV*WDPVLA
Trigger: TGCCAGGACTGGATCCCAGCACACAGACCAGCTCAC...CCTGCTGCTTCTACTGATACCCTTTTGACTGGAATAGACTGGCTGGGCTTGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR GCA 90 bp AGAATACCTAAAGGAAAGGAGGAGCTGAGGAGCACCAGAGAACTGCTCCAGAGCTGTGCCCCCGACATCTaGCGGATCTCGCTGATCTTG +
Preference number: 4 (lower is better)
Translates to: RIPKGKEELRSTRELLQSCAPDI*RISLIL
Trigger: CAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACA...GCTCTGGAGCAGTTCTCTGGTGCTCCTCAGCTCCTCCTTTCCTTTAGGTATTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR GCA 90 bp CATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCACCCGATCTTAATATGTaGCCCCGACATCTGCCGGAT +
Preference number: 4 (lower is better)
Translates to: HTPRTLGQKLSPLRGGSPPDLNM*PRHLPD
Trigger: ATCCGGCAGATGTCGGGGGCACATATTAAGATCGGG...TGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp CTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGTATAACAGCACAGATCTaGCGCACACACAGGATGATG +
Preference number: 4 (lower is better)
Translates to: LGQKLSPLRGGSPKMGQGITAQI*RTHRMM
Trigger: CATCATCCTGTGTGTGCGCCAGATCTGTGCTGTTAT...ACCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp CCTAAAGGAAAGGAGGAGCTGAGGAGCACCAGAGAACTGCTCCAGAGCACAGGAGATGATACGGGATTGTaGCTCCTTTGGGTGGGGACT +
Preference number: 4 (lower is better)
Translates to: PKGKEELRSTRELLQSTGDDTGL*LLWVGT
Trigger: AGTCCCCACCCAAAGGAGCCACAATCCCGTATCATC...TCCTGTGCTCTGGAGCAGTTCTCTGGTGCTCCTCAGCTCCTCCTTTCCTTTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CCA 90 bp AGAATACCTAAAGGAAAGGAGGAGCTGAGGAGCACCAGAGAACTGCTCCAGAGCTGGCCTGAGAGCTGCTaGAGCTTGGTGACCTCTGCA +
Preference number: 4 (lower is better)
Translates to: RIPKGKEELRSTRELLQSWPESC*SLVTSA
Trigger: TGCAGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCA...GCTCTGGAGCAGTTCTCTGGTGCTCCTCAGCTCCTCCTTTCCTTTAGGTATTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CCA 90 bp TCAGTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCGAAACTCCTGTGAGCTaGTCTGTGTGCTGGGATCCA +
Preference number: 4 (lower is better)
Translates to: SVGGEFLPFSFLAPIGRCETPVS*SVCWDP
Trigger: TGGATCCCAGCACACAGACCAGCTCACAGGAGTTTC...GCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTACTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp TTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTAGCCAATCAGATCATTaGGAACCAGAAACTCCTGTG +
Preference number: 4 (lower is better)
Translates to: LRPHGGVSLGRKDVEAAPSQSDH*EPETPV
Trigger: CACAGGAGTTTCTGGTTCCCAATGATCTGATTGGCT...AGGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp GGACAAGCCCAGCCAGTCTATTCCAGTCAAAAGGGTATCAGTAGAAGCAGCAGGCTGATCTTGCTGCCCTaGCGTCCGATCACACAGCCA +
Preference number: 4 (lower is better)
Translates to: GQAQPVYSSQKGISRSSRLILLP*RPITQP
Trigger: TGGCTGTGTGATCGGACGCCAGGGCAGCAAGATCAG...CCTGCTGCTTCTACTGATACCCTTTTGACTGGAATAGACTGGCTGGGCTTGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR CCA 90 bp ATGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGTCTTGCTGCCATCATTaGGAACCAGAAACTCCTGTG +
Preference number: 4 (lower is better)
Translates to: MRLALLALETPWWSLLGQSCCHH*EPETPV
Trigger: CACAGGAGTTTCTGGTTCCCAATGATGGCAGCAAGA...CTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188396.2
CDS-3UTR TCA 90 bp AGAATACCTAAAGGAAAGGAGGAGCTGAGGAGCACCAGAGAACTGCTCCAGAGCAACCAGAAACTCCTGTaGGCTGGTCTGTGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: RIPKGKEELRSTRELLQSNQKLL*AGLCAG
Trigger: CCCAGCACACAGACCAGCTCACAGGAGTTTCTGGTT...GCTCTGGAGCAGTTCTCTGGTGCTCCTCAGCTCCTCCTTTCCTTTAGGTATTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CCA 90 bp GCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTATAACAGCACAGATCTaGCGCACACACAGGATGATG +
Preference number: 4 (lower is better)
Translates to: ALLALETPWWSLLGQEGCITAQI*RTHRMM
Trigger: CATCATCCTGTGTGTGCGCCAGATCTGTGCTGTTAT...ACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp AATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGGATGATACGGGATTGTaGCTCCTTTGGGTGGGGACT +
Preference number: 4 (lower is better)
Translates to: NFCRSAFLLPLAAAILAVDDTGL*LLWVGT
Trigger: AGTCCCCACCCAAAGGAGCCACAATCCCGTATCATC...CACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp TCTATTCCAGTCAAAAGGGTATCAGTAGAAGCAGCAGGATCTACAGGGGATGAGGCAAAGGGAACGGCGTaGCCTGAGAGCTGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: SIPVKRVSVEAAGSTGDEAKGTA*PESCWS
Trigger: GCTCCAGCAGCTCTCAGGCCACGCCGTTCCCTTTGC...CTCATCCCCTGTAGATCCTGCTGCTTCTACTGATACCCTTTTGACTGGAATAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR CCA 90 bp GGGAGGGAGGGCAGAAACCACAGGCAGACACAAGACAAGTTAAGGGGAAAAATAGTCCTGGCACCACACTaGGTGATGCAAAGGGAACGG +
Preference number: 4 (lower is better)
Translates to: GREGRNHRQTQDKLRGKIVLAPH*VMQRER
Trigger: CCGTTCCCTTTGCATCACCCAGTGTGGTGCCAGGAC...TATTTTTCCCCTTAACTTGTCTTGTGTCTGCCTGTGGTTTCTGCCCTCCCTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CCA 90 bp GAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGAAACTCCTGTGAGCTaGTCTGTGTGCTGGGATCCA +
Preference number: 4 (lower is better)
Translates to: ENFCRSAFLLPLAAAILAETPVS*SVCWDP
Trigger: TGGATCCCAGCACACAGACCAGCTCACAGGAGTTTC...TGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
CDS-3UTR CCA 90 bp CGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAAGCCAATCAGATCATTaGGAACCAGAAACTCCTGTG +
Preference number: 4 (lower is better)
Translates to: RLALLALETPWWSLLGQESQSDH*EPETPV
Trigger: CACAGGAGTTTCTGGTTCCCAATGATCTGATTGGCT...TTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR CCA 90 bp CATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCACCAGCACCCTCCGCTTaGTTCCCGATCTTAATATGT +
Preference number: 4 (lower is better)
Translates to: HTPRTLGQKLSPLRGGSPPAPSA*FPILIC
Trigger: ACATATTAAGATCGGGAACCAAGCGGAGGGTGCTGG...TGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR TCA 90 bp GGGAGGGAGGGCAGAAACCACAGGCAGACACAAGACAAGTTAAGGGGAAAAATAGTCACTGCTCCATACTaGCCCTGGACAGAGAAACCC +
Preference number: 4 (lower is better)
Translates to: GREGRNHRQTQDKLRGKIVTAPY*PWTEKP
Trigger: GGGTTTCTCTGTCCAGGGTCAGTATGGAGCAGTGAC...TATTTTTCCCCTTAACTTGTCTTGTGTCTGCCTGTGGTTTCTGCCCTCCCTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR TCA 90 bp TCTATTCCAGTCAAAAGGGTATCAGTAGAAGCAGCAGGATCTACAGGGGATGAGGGCGATGGAGACCGGTaGGCCAGTGATGGTCACATG +
Preference number: 4 (lower is better)
Translates to: SIPVKRVSVEAAGSTGDEGDGDR*ASDGHM
Trigger: CATGTGACCATCACTGGCTCACCGGTCTCCATCGCC...CTCATCCCCTGTAGATCCTGCTGCTTCTACTGATACCCTTTTGACTGGAATAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR CCA 90 bp TTGCCCTCCCCCGGACAAGCCCAGCCAGTCTATTCCAGTCAAAAGGGTATCAGTATAACAGCACAGATCTaGCGCACACACAGGATGATG +
Preference number: 4 (lower is better)
Translates to: LPSPGQAQPVYSSQKGISITAQI*RTHRMM
Trigger: CATCATCCTGTGTGTGCGCCAGATCTGTGCTGTTAT...ACTGATACCCTTTTGACTGGAATAGACTGGCTGGGCTTGTCCGGGGGAGGGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR CCA 90 bp AGAATACCTAAAGGAAAGGAGGAGCTGAGGAGCACCAGAGAACTGCTCCAGAGCGAAACTCCTGTGAGCTaGTCTGTGTGCTGGGATCCA +
Preference number: 4 (lower is better)
Translates to: RIPKGKEELRSTRELLQSETPVS*SVCWDP
Trigger: TGGATCCCAGCACACAGACCAGCTCACAGGAGTTTC...GCTCTGGAGCAGTTCTCTGGTGCTCCTCAGCTCCTCCTTTCCTTTAGGTATTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR TCA 90 bp GGCAGAAACCACAGGCAGACACAAGACAAGTTAAGGGGAAAAATAAGAGAGAAGAGGGAGAGGCTCGGATaGTACGGGATTGTGGCTCCT +
Preference number: 4 (lower is better)
Translates to: GRNHRQTQDKLRGKIREKRERLG*YGIVAP
Trigger: AGGAGCCACAATCCCGTATCATCCGAGCCTCTCCCT...CTTCTCTCTTATTTTTCCCCTTAACTTGTCTTGTGTCTGCCTGTGGTTTCTGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR TCA 90 bp CAGAAACCACAGGCAGACACAAGACAAGTTAAGGGGAAAAATAAGAGAGAAGATGGCGATGGAGACCGGTaGGCCAGTGATGGTCACATG +
Preference number: 4 (lower is better)
Translates to: QKPQADTRQVKGKNKREDGDGDR*ASDGHM
Trigger: CATGTGACCATCACTGGCTCACCGGTCTCCATCGCC...ATCTTCTCTCTTATTTTTCCCCTTAACTTGTCTTGTGTCTGCCTGTGGTTTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CCA 90 bp AGAATACCTAAAGGAAAGGAGGAGCTGAGGAGCACCAGAGAACTGCTCCAGAGCAGCCAATCAGATCATTaGGAACCAGAAACTCCTGTG +
Preference number: 4 (lower is better)
Translates to: RIPKGKEELRSTRELLQSSQSDH*EPETPV
Trigger: CACAGGAGTTTCTGGTTCCCAATGATCTGATTGGCT...GCTCTGGAGCAGTTCTCTGGTGCTCCTCAGCTCCTCCTTTCCTTTAGGTATTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR GCA 90 bp GGCAGAAACCACAGGCAGACACAAGACAAGTTAAGGGGAAAAATAAGAGAGAAGCCCGATCTTAATATGTaGCCCCGACATCTGCCGGAT +
Preference number: 4 (lower is better)
Translates to: GRNHRQTQDKLRGKIREKPDLNM*PRHLPD
Trigger: ATCCGGCAGATGTCGGGGGCACATATTAAGATCGGG...CTTCTCTCTTATTTTTCCCCTTAACTTGTCTTGTGTCTGCCTGTGGTTTCTGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CCA 90 bp CAGAAACCACAGGCAGACACAAGACAAGTTAAGGGGAAAAATAAGAGAGAAGATCCAGCACCCTCCGCTTaGTTCCCGATCTTAATATGT +
Preference number: 4 (lower is better)
Translates to: QKPQADTRQVKGKNKREDPAPSA*FPILIC
Trigger: ACATATTAAGATCGGGAACCAAGCGGAGGGTGCTGG...ATCTTCTCTCTTATTTTTCCCCTTAACTTGTCTTGTGTCTGCCTGTGGTTTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CAA 90 bp CCCGGCGGTGGCCCAGGCAGTGATGAGGTACTGAGCCAGGGCGATGGAGACCGGCGGATCTCGCTGATCTaGCTGCCCTGGCGTCCGATC +
Preference number: 5 (lower is better)
Translates to: PGGGPGSDEVLSQGDGDRRISLI*LPWRPI
Trigger: GATCGGACGCCAGGGCAGCAAGATCAGCGAGATCCG...CCGGTCTCCATCGCCCTGGCTCAGTACCTCATCACTGCCTGGGCCACCGCCGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213201.2
CDS-3UTR CAA 90 bp TCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGGAGAGCTGCTGGAGCTaGGTGACCTCTGCAGGGGTC +
Preference number: 5 (lower is better)
Translates to: SCSHWPLPSWQCRPPSPAESCWS*VTSAGV
Trigger: GACCCCTGCAGAGGTCACCAAGCTCCAGCAGCTCTC...CGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp ACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTGCCGGTGCCGTTCAGCTTTCTaGCTCCCATTGGCCGCTGCC +
Preference number: 5 (lower is better)
Translates to: TPWWSLLGQEGCGGSPCRCRSAF*LPLAAA
Trigger: GGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCA...CCGGCAGGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
CDS TCA 90 bp TCACCAGGCAGTGATGAGGTACTGAGCCAGGGCGATGGAGACCGGTaGGCCAGTGATGGTCACATGCCGCTCCCCAGCACCCTCCGCTTG +
Preference number: 5 (lower is better)
Translates to: SPGSDEVLSQGDGDR*ASDGHMPLPSTLRL
Trigger: CAAGCGGAGGGTGCTGGGGAGCGGCATGTGACCATCACTGGCTCACCGGTCTCCATCGCCCTGGCTCAGTACCTCATCACTGCCTGGTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CAA 90 bp CGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCGAGAGCTGCTGGAGCTaGGTGACCTCTGCAGGGGTC +
Preference number: 5 (lower is better)
Translates to: RLRPHGGVSLGRKDVEAAESCWS*VTSAGV
Trigger: GACCCCTGCAGAGGTCACCAAGCTCCAGCAGCTCTC...GGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS CCA 90 bp GGATCCAGTCCTGGCACCACACTGGGTGATGCAAAGGGAACGGCGTaGCCTGAGAGCTGCTGGAGCTTGGTGACCTCTGCAGGGGTCACT +
Preference number: 5 (lower is better)
Translates to: GSSPGTTLGDAKGTA*PESCWSLVTSAGVT
Trigger: AGTGACCCCTGCAGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCACGCCGTTCCCTTTGCATCACCCAGTGTGGTGCCAGGACTGGATCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000190428.7
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS CCA 90 bp GGGAGAAGGACTGGCACCACACTGGGTGATGCAAAGGGAACGGCGTaGCCTGAGAGCTGCTGGAGCTTGGTGACCTCTGCAGGGGTCACT +
Preference number: 5 (lower is better)
Translates to: GRRTGTTLGDAKGTA*PESCWSLVTSAGVT
Trigger: AGTGACCCCTGCAGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCACGCCGTTCCCTTTGCATCACCCAGTGTGGTGCCAGTCCTTCTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185507.7
CDS-3UTR CAA 90 bp TCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGCGACAGAGAAACCCTGGTaGGCCGAGAGGAGGACAGTA +
Preference number: 5 (lower is better)
Translates to: SCSHWPLPSWQCRPPSPATEKPW*AERRTV
Trigger: TACTGTCCTCCTCTCGGCCAACCAGGGTTTCTCTGT...CGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp TGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGGAGAGCTGCTGGAGCTaGGTGACCTCTGCAGGGGTC +
Preference number: 5 (lower is better)
Translates to: CVWHYWRLRPHGGVSLGRESCWS*VTSAGV
Trigger: GACCCCTGCAGAGGTCACCAAGCTCCAGCAGCTCTC...CCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp ACCAGAGAACTGCTCCAGAGCACAGGAGGTGCTCCCTTCCACCCCAACCTGTGCGAGAGCTGCTGGAGCTaGGTGACCTCTGCAGGGGTC +
Preference number: 5 (lower is better)
Translates to: TRELLQSTGGAPFHPNLCESCWS*VTSAGV
Trigger: GACCCCTGCAGAGGTCACCAAGCTCCAGCAGCTCTC...GCACAGGTTGGGGTGGAAGGGAGCACCTCCTGTGCTCTGGAGCAGTTCTCTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CAA 90 bp CTGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCTGCCGTTCAGCTTTCTaGCTCCCATTGGCCGCTGCC +
Preference number: 5 (lower is better)
Translates to: LPWGCHTPRTLGQKLSPLCRSAF*LPLAAA
Trigger: GGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCA...GAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
CDS TCA 90 bp CCCTGGTTGGCCGAGAGGAGGACAGTACCTAGGGAGAGGCTCGGATaGTACGGGATTGTGGCTCCTTTGGGTGGGGACTCTCGGATCTCC +
Preference number: 5 (lower is better)
Translates to: PWLAERRTVPRERLG*YGIVAPLGGDSRIS
Trigger: GGAGATCCGAGAGTCCCCACCCAAAGGAGCCACAATCCCGTATCATCCGAGCCTCTCCCTAGGTACTGTCCTCCTCTCGGCCAACCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214252.2
CDS CCA 90 bp AGCCAATCAGCTGGCACCACACTGGGTGATGCAAAGGGAACGGCGTaGCCTGAGAGCTGCTGGAGCTTGGTGACCTCTGCAGGGGTCACT +
Preference number: 5 (lower is better)
Translates to: SQSAGTTLGDAKGTA*PESCWSLVTSAGVT
Trigger: AGTGACCCCTGCAGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCACGCCGTTCCCTTTGCATCACCCAGTGTGGTGCCAGCTGATTGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213201.2
CDS-3UTR CAA 90 bp GCCAGGGCGATGGAGACCGGTGAGCCAGTGATGGTCACATGCCGCTCCCCAGCAGTCTCTCGGATCTCCTaGATTTTGGTGCCTGCCTTC +
Preference number: 5 (lower is better)
Translates to: ARAMETGEPVMVTCRSPAVSRIS*ILVPAF
Trigger: GAAGGCAGGCACCAAAATCAAGGAGATCCGAGAGAC...TGCTGGGGAGCGGCATGTGACCATCACTGGCTCACCGGTCTCCATCGCCCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
CDS-3UTR CAA 90 bp CTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGAGAGAGCTGCTGGAGCTaGGTGACCTCTGCAGGGGTC +
Preference number: 5 (lower is better)
Translates to: LALLALETPWWSLLGQEGESCWS*VTSAGV
Trigger: GACCCCTGCAGAGGTCACCAAGCTCCAGCAGCTCTC...TCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp ATGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAGAGCTGCTGGAGCTaGGTGACCTCTGCAGGGGTC +
Preference number: 5 (lower is better)
Translates to: MRLALLALETPWWSLLGQESCWS*VTSAGV
Trigger: GACCCCTGCAGAGGTCACCAAGCTCCAGCAGCTCTC...CTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp GCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCAGGAAGGGCACAGGCTaGAGGCCGATGAAGTTGGAG +
Preference number: 5 (lower is better)
Translates to: ALETPWWSLLGQEGCGGSRKGTG*RPMKLE
Trigger: CTCCAACTTCATCGGCCTCAAGCCTGTGCCCTTCCT...GCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
CDS-3UTR CAA 90 bp CGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCGCTTTCTTGCTCCCATaGGCCGCTGCCATCTTGGCA +
Preference number: 5 (lower is better)
Translates to: RLRPHGGVSLGRKDVEAAAFLLP*AAAILA
Trigger: TGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGC...GGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CAA 90 bp CTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCGGGATTGTGGCTCCTTaGGGTGGGGACTCCAGAATA +
Preference number: 5 (lower is better)
Translates to: LALETPWWSLLGQEGCGGGIVAP*GGDSRI
Trigger: TATTCTGGAGTCCCCACCCAAAGGAGCCACAATCCC...GCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp CTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAAGCCCGGGGATTGTGGCTCCTTaGGGTGGGGACTCCAGAATA +
Preference number: 5 (lower is better)
Translates to: LSCSHWPLPSWQCRPPSPGIVAP*GGDSRI
Trigger: TATTCTGGAGTCCCCACCCAAAGGAGCCACAATCCC...CGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp TGCCGCTCCCCAGCACCCTCCGCTTGGTTCCCGATCTTAATATGTGCCCCCGACGGGATTGTGGCTCCTTaGGGTGGGGACTCCAGAATA +
Preference number: 5 (lower is better)
Translates to: CRSPAPSAWFPILICAPDGIVAP*GGDSRI
Trigger: TATTCTGGAGTCCCCACCCAAAGGAGCCACAATCCC...GTCGGGGGCACATATTAAGATCGGGAACCAAGCGGAGGGTGCTGGGGAGCGGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp TGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCATCGGATGATACGGGATaGTGGCTCCTTTGGGTGGGG +
Preference number: 5 (lower is better)
Translates to: CPGAAILLEPWARNCPLSSDDTG*WLLWVG
Trigger: CCCCACCCAAAGGAGCCACAATCCCGTATCATCCGA...TGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR CAA 90 bp CTCCGCTTGGTTCCCGATCTTAATATGTGCCCCCGACATCTGCCGGATCTCGCTGAGAGCTGCTGGAGCTaGGTGACCTCTGCAGGGGTC +
Preference number: 5 (lower is better)
Translates to: LRLVPDLNMCPRHLPDLAESCWS*VTSAGV
Trigger: GACCCCTGCAGAGGTCACCAAGCTCCAGCAGCTCTC...AGCGAGATCCGGCAGATGTCGGGGGCACATATTAAGATCGGGAACCAAGCGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp GCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTCGGATCTCGCTGATCTaGCTGCCCTGGCGTCCGATC +
Preference number: 5 (lower is better)
Translates to: ALLALETPWWSLLGQEGCRISLI*LPWRPI
Trigger: GATCGGACGCCAGGGCAGCAAGATCAGCGAGATCCG...ACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR CAA 90 bp GCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCGGATCTCGCTGATCTaGCTGCCCTGGCGTCCGATC +
Preference number: 5 (lower is better)
Translates to: AILLEPWARNCPLSEEDLRISLI*LPWRPI
Trigger: GATCGGACGCCAGGGCAGCAAGATCAGCGAGATCCG...GAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR CAA 90 bp CTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCCCCAGCACCCTCCGCTaGGTTCCCGATCTTAATATG +
Preference number: 5 (lower is better)
Translates to: LETPWWSLLGQEGCGGSPPSTLR*VPDLNM
Trigger: CATATTAAGATCGGGAACCAAGCGGAGGGTGCTGGG...GGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAG
60% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CAA 90 bp TACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGCCCCCAGAGGTAGACTaGGCCGTCTCTAGACAGGCA +
Preference number: 5 (lower is better)
Translates to: YWRLRPHGGVSLGRKDVEPPEVD*AVSRQA
Trigger: TGCCTGTCTAGAGACGGCCAAGTCTACCTCTGGGGG...CTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
CDS-3UTR CAA 90 bp CGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCGGATCTCCTTGATTTaGGTGCCTGCCTTCCCAATC +
Preference number: 5 (lower is better)
Translates to: RLRPHGGVSLGRKDVEAARISLI*VPAFPI
Trigger: GATTGGGAAGGCAGGCACCAAAATCAAGGAGATCCG...GGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000213156.2
CDS-3UTR CAA 90 bp CCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCGGGATTGTGGCTCCTTaGGGTGGGGACTCCAGAATA +
Preference number: 5 (lower is better)
Translates to: PFSFLAPIGRCHLGSVGRGIVAP*GGDSRI
Trigger: TATTCTGGAGTCCCCACCCAAAGGAGCCACAATCCC...GCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp GAGAGCCCCTGGCCATTCTCTGCATCCAAGCATAGGTCTGTAGAGGTGGGGCCCGGGATTGTGGCTCCTTaGGGTGGGGACTCCAGAATA +
Preference number: 5 (lower is better)
Translates to: ESPWPFSASKHRSVEVGPGIVAP*GGDSRI
Trigger: TATTCTGGAGTCCCCACCCAAAGGAGCCACAATCCC...GGGCCCCACCTCTACAGACCTATGCTTGGATGCAGAGAATGGCCAGGGGCTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR CAA 90 bp TACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGTCGGATGATACGGGATaGTGGCTCCTTTGGGTGGGG +
Preference number: 5 (lower is better)
Translates to: YWRLRPHGGVSLGRKDVESDDTG*WLLWVG
Trigger: CCCCACCCAAAGGAGCCACAATCCCGTATCATCCGA...CTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp TGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGACAGAGAAACCCTGGTaGGCCGAGAGGAGGACAGTA +
Preference number: 5 (lower is better)
Translates to: CVWHYWRLRPHGGVSLGRTEKPW*AERRTV
Trigger: TACTGTCCTCCTCTCGGCCAACCAGGGTTTCTCTGT...CCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp TGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCACCCAGCACCCTCCGCTaGGTTCCCGATCTTAATATG +
Preference number: 5 (lower is better)
Translates to: CPGAAILLEPWARNCPLSPSTLR*VPDLNM
Trigger: CATATTAAGATCGGGAACCAAGCGGAGGGTGCTGGG...TGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CAA 90 bp TTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGACCCCCAGAGGTAGACTaGGCCGTCTCTAGACAGGCA +
Preference number: 5 (lower is better)
Translates to: LLALETPWWSLLGQEGCGPPEVD*AVSRQA
Trigger: TGCCTGTCTAGAGACGGCCAAGTCTACCTCTGGGGG...TCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
CDS TCA 90 bp CCCTGGTTGGCCGAGAGGAGGACAGTACCTAGGGAGAGGCTCGGATaGTACGGGATTGTGGCTCCTTTGGGTGGGGACTCCAGAATAACA +
Preference number: 5 (lower is better)
Translates to: PWLAERRTVPRERLG*YGIVAPLGGDSRIT
Trigger: TGTTATTCTGGAGTCCCCACCCAAAGGAGCCACAATCCCGTATCATCCGAGCCTCTCCCTAGGTACTGTCCTCCTCTCGGCCAACCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000190428.7
ENSMUST00000213156.2
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS GCA 90 bp ATGCCGCTCCCCAGCACCCTCCGCTTGGTTCCCGATCTTAATATGTaGCCCCGACATCTGCCGGATCTCGCTGATCTTGCTGCCATCATT +
Preference number: 5 (lower is better)
Translates to: MPLPSTLRLVPDLNM*PRHLPDLADLAAII
Trigger: AATGATGGCAGCAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACATATTAAGATCGGGAACCAAGCGGAGGGTGCTGGGGAGCGGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188396.2
CDS CCA 90 bp ATTGTGGCTCCTTTGGGTGGGGACTCCAGAATAACAGCACAGATCTaGCGCACACACAGGATGATGGCGTCAGGCACCCCGGACACAGTG +
Preference number: 5 (lower is better)
Translates to: IVAPLGGDSRITAQI*RTHRMMASGTPDTV
Trigger: CACTGTGTCCGGGGTGCCTGACGCCATCATCCTGTGTGTGCGCCAGATCTGTGCTGTTATTCTGGAGTCCCCACCCAAAGGAGCCACAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000185779.7
ENSMUST00000190428.7
ENSMUST00000213156.2
ENSMUST00000213201.2
ENSMUST00000215656.2
CDS-3UTR CAA 90 bp CCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGCGGATCTCCTTGATTTaGGTGCCTGCCTTCCCAATC +
Preference number: 5 (lower is better)
Translates to: PGAAILLEPWARNCPLSERISLI*VPAFPI
Trigger: GATTGGGAAGGCAGGCACCAAAATCAAGGAGATCCG...CTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR CAA 90 bp TTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGGATGTGGAGGCAGCCCCTGTCTCTCGGATCTCCTaGATTTTGGTGCCTGCCTTC +
Preference number: 5 (lower is better)
Translates to: LRPHGGVSLGRKDVEAAPVSRIS*ILVPAF
Trigger: GAAGGCAGGCACCAAAATCAAGGAGATCCGAGAGAC...AGGGGCTGCCTCCACATCCTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000213156.2
CDS-3UTR CAA 90 bp TTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATCTTGGCAGTGTAGGCCGCCAATCGGATGATACGGGATaGTGGCTCCTTTGGGTGGGG +
Preference number: 5 (lower is better)
Translates to: FSFLAPIGRCHLGSVGRQSDDTG*WLLWVG
Trigger: CCCCACCCAAAGGAGCCACAATCCCGTATCATCCGA...TTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp CTCCGCTTGGTTCCCGATCTTAATATGTGCCCCCGACATCTGCCGGATCTCGCTTCGGATGATACGGGATaGTGGCTCCTTTGGGTGGGG +
Preference number: 5 (lower is better)
Translates to: LRLVPDLNMCPRHLPDLASDDTG*WLLWVG
Trigger: CCCCACCCAAAGGAGCCACAATCCCGTATCATCCGA...AGCGAGATCCGGCAGATGTCGGGGGCACATATTAAGATCGGGAACCAAGCGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp GGTGCATCCATGCGTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCACAGAGAAACCCTGGTaGGCCGAGAGGAGGACAGTA +
Preference number: 5 (lower is better)
Translates to: GASMRLALLALETPWWSLTEKPW*AERRTV
Trigger: TACTGTCCTCCTCTCGGCCAACCAGGGTTTCTCTGT...GAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGACGCATGGATGCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp GCACCCTCCGCTTGGTTCCCGATCTTAATATGTGCCCCCGACATCTGCCGGATCACAGAGAAACCCTGGTaGGCCGAGAGGAGGACAGTA +
Preference number: 5 (lower is better)
Translates to: APSAWFPILICAPDICRITEKPW*AERRTV
Trigger: TACTGTCCTCCTCTCGGCCAACCAGGGTTTCTCTGT...GATCCGGCAGATGTCGGGGGCACATATTAAGATCGGGAACCAAGCGGAGGGTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp GTCTGGCATTACTGGCGCTTGAGACCCCATGGTGGAGTCTCCTTGGGCAGGAAGCCCAGCACCCTCCGCTaGGTTCCCGATCTTAATATG +
Preference number: 5 (lower is better)
Translates to: VWHYWRLRPHGGVSLGRKPSTLR*VPDLNM
Trigger: CATATTAAGATCGGGAACCAAGCGGAGGGTGCTGGG...CTTCCTGCCCAAGGAGACTCCACCATGGGGTCTCAAGCGCCAGTAATGCCAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CAA 90 bp GCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCGCTTTCTTGCTCCCATaGGCCGCTGCCATCTTGGCA +
Preference number: 5 (lower is better)
Translates to: AILLEPWARNCPLSEEDLAFLLP*AAAILA
Trigger: TGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGC...GAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CAA 90 bp CCCTGCCCTGGGGCTGCCATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCATCTTGCTGCCATCATaGGGAACCAGAAACTCCTGT +
Preference number: 5 (lower is better)
Translates to: PCPGAAILLEPWARNCPLILLPS*GTRNSC
Trigger: ACAGGAGTTTCTGGTTCCCAATGATGGCAGCAAGAT...GAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATGGCAGCCCCAGGGCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188396.2
CDS-3UTR CAA 90 bp GGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAGGGTAGGGTCTCTCGGATCTCCTaGATTTTGGTGCCTGCCTTC +
Preference number: 5 (lower is better)
Translates to: GQKLSPLRGGSPKMGQGRVSRIS*ILVPAF
Trigger: GAAGGCAGGCACCAAAATCAAGGAGATCCGAGAGAC...CCTACCCTGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000213156.2
CDS-3UTR CAA 90 bp GTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATTCGGATGATACGGGATaGTGGCTCCTTTGGGTGGGG +
Preference number: 5 (lower is better)
Translates to: VGGEFLPFSFLAPIGRCHSDDTG*WLLWVG
Trigger: CCCCACCCAAAGGAGCCACAATCCCGTATCATCCGA...ATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp ATACCTAAAGGAAAGGAGGAGCTGAGGAGCACCAGAGAACTGCTCCAGAGCACACGGATCTCGCTGATCTaGCTGCCCTGGCGTCCGATC +
Preference number: 5 (lower is better)
Translates to: IPKGKEELRSTRELLQSTRISLI*LPWRPI
Trigger: GATCGGACGCCAGGGCAGCAAGATCAGCGAGATCCG...TGTGCTCTGGAGCAGTTCTCTGGTGCTCCTCAGCTCCTCCTTTCCTTTAGGTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CAA 90 bp CATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAGGAAGGGCACAGGCTaGAGGCCGATGAAGTTGGAG +
Preference number: 5 (lower is better)
Translates to: HTPRTLGQKLSPLRGGSPRKGTG*RPMKLE
Trigger: CTCCAACTTCATCGGCCTCAAGCCTGTGCCCTTCCT...TGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
CDS-3UTR CAA 90 bp CATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAGCTTTCTTGCTCCCATaGGCCGCTGCCATCTTGGCA +
Preference number: 5 (lower is better)
Translates to: HTPRTLGQKLSPLRGGSPAFLLP*AAAILA
Trigger: TGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGC...TGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS GCA 90 bp GCACCCTCCGCTTGGTTCCCGATCTTAATATGTGCCCCCGACATCTaGCGGATCTCGCTGATCTTGCTGCCATCATTGGGAACCAGAAAC +
Preference number: 5 (lower is better)
Translates to: APSAWFPILICAPDI*RISLILLPSLGTRN
Trigger: GTTTCTGGTTCCCAATGATGGCAGCAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACATATTAAGATCGGGAACCAAGCGGAGGGTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000188396.2
CDS GCA 90 bp GACAAGGCGCAAGGTCACTGGAGGTCTGGAGACACTGCCACCATTTaGAGGAGCAGCACAAAGGTCCTGTTCCCGGATTCGCTTTACAGT +
Preference number: 5 (lower is better)
Translates to: DKAQGHWRSGDTATI*RSSTKVLFPDSLYS
Trigger: ACTGTAAAGCGAATCCGGGAACAGGACCTTTGTGCTGCTCCTGCAAATGGTGGCAGTGTCTCCAGACCTCCAGTGACCTTGCGCCTTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215656.2
CDS-3UTR CAA 90 bp AACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAAAGATGGGGCAAGACACTGCCACCATTaGCAGGAGCAGCACAAAGGT +
Preference number: 5 (lower is better)
Translates to: NPGPETVPSQRRISKDGARHCHH*QEQHKG
Trigger: ACCTTTGTGCTGCTCCTGCAAATGGTGGCAGTGTCT...TGCCCCATCTTTGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR CAA 90 bp TTGGGTTGCCCTCCCCCGGACAAGCCCAGCCAGTCTATTCCAGTCAAAAGGGTACGGATCTCCTTGATTTaGGTGCCTGCCTTCCCAATC +
Preference number: 5 (lower is better)
Translates to: LGCPPPDKPSQSIPVKRVRISLI*VPAFPI
Trigger: GATTGGGAAGGCAGGCACCAAAATCAAGGAGATCCG...TACCCTTTTGACTGGAATAGACTGGCTGGGCTTGTCCGGGGGAGGGCAACCCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR CAA 90 bp AGTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCAACAGAGAAACCCTGGTaGGCCGAGAGGAGGACAGTA +
Preference number: 5 (lower is better)
Translates to: SRGRISAVQLSCSHWPLPTEKPW*AERRTV
Trigger: TACTGTCCTCCTCTCGGCCAACCAGGGTTTCTCTGT...TGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp CATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCAACAGAGAAACCCTGGTaGGCCGAGAGGAGGACAGTA +
Preference number: 5 (lower is better)
Translates to: HTPRTLGQKLSPLRGGSPTEKPW*AERRTV
Trigger: TACTGTCCTCCTCTCGGCCAACCAGGGTTTCTCTGT...TGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000213156.2
CDS-3UTR CAA 90 bp CATACTCCTAGAACCCTGGGCCAGAAACTGTCCCCTCTCAGAGGAGGATCTCCACGGATCTCGCTGATCTaGCTGCCATCATTGGGAACC +
Preference number: 5 (lower is better)
Translates to: HTPRTLGQKLSPLRGGSPRISLI*LPSLGT
Trigger: GGTTCCCAATGATGGCAGCAAGATCAGCGAGATCCG...TGGAGATCCTCCTCTGAGAGGGGACAGTTTCTGGCCCAGGGTTCTAGGAGTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188396.2
CDS GCA 90 bp GACAAGGCGCAAGGTCACTGGAGGTCTGGAGACACTGCCACCATTTaGAGGAGCAGCACAAAGGTCCTCATCCAGCTTGAAGGCAATCAT +
Preference number: 5 (lower is better)
Translates to: DKAQGHWRSGDTATI*RSSTKVLIQLEGNH
Trigger: ATGATTGCCTTCAAGCTGGATGAGGACCTTTGTGCTGCTCCTGCAAATGGTGGCAGTGTCTCCAGACCTCCAGTGACCTTGCGCCTTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000024260.14
ENSMUST00000185779.7
ENSMUST00000185874.7
ENSMUST00000190430.2
ENSMUST00000214252.2
ENSMUST00000216379.2
CDS-3UTR CAA 90 bp GTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCATGTCTCTCGGATCTCCTaGATTTTGGTGCCTGCCTTC +
Preference number: 5 (lower is better)
Translates to: VGGEFLPFSFLAPIGRCHVSRIS*ILVPAF
Trigger: GAAGGCAGGCACCAAAATCAAGGAGATCCGAGAGAC...ATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000185507.7
ENSMUST00000213201.2
CDS-3UTR CAA 90 bp ATACCTAAAGGAAAGGAGGAGCTGAGGAGCACCAGAGAACTGCTCCAGAGCACATCGGATGATACGGGATaGTGGCTCCTTTGGGTGGGG +
Preference number: 5 (lower is better)
Translates to: IPKGKEELRSTRELLQSTSDDTG*WLLWVG
Trigger: CCCCACCCAAAGGAGCCACAATCCCGTATCATCCGA...TGTGCTCTGGAGCAGTTCTCTGGTGCTCCTCAGCTCCTCCTTTCCTTTAGGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CAA 90 bp AGAATACCTAAAGGAAAGGAGGAGCTGAGGAGCACCAGAGAACTGCTCCAGAGCGGGATTGTGGCTCCTTaGGGTGGGGACTCCAGAATA +
Preference number: 5 (lower is better)
Translates to: RIPKGKEELRSTRELLQSGIVAP*GGDSRI
Trigger: TATTCTGGAGTCCCCACCCAAAGGAGCCACAATCCC...GCTCTGGAGCAGTTCTCTGGTGCTCCTCAGCTCCTCCTTTCCTTTAGGTATTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CAA 90 bp GGACAAGCCCAGCCAGTCTATTCCAGTCAAAAGGGTATCAGTAGAAGCAGCAGGAGGTCCTCATCCAGCTaGAAGGCAATCATGGAGACC +
Preference number: 5 (lower is better)
Translates to: GQAQPVYSSQKGISRSSRRSSSS*KAIMET
Trigger: GGTCTCCATGATTGCCTTCAAGCTGGATGAGGACCT...CCTGCTGCTTCTACTGATACCCTTTTGACTGGAATAGACTGGCTGGGCTTGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024260.14
CDS-3UTR CAA 90 bp GGCAGAAACCACAGGCAGACACAAGACAAGTTAAGGGGAAAAATAAGAGAGAAGACAGAGAAACCCTGGTaGGCCGAGAGGAGGACAGTA +
Preference number: 5 (lower is better)
Translates to: GRNHRQTQDKLRGKIREKTEKPW*AERRTV
Trigger: TACTGTCCTCCTCTCGGCCAACCAGGGTTTCTCTGT...CTTCTCTCTTATTTTTCCCCTTAACTTGTCTTGTGTCTGCCTGTGGTTTCTGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS-3UTR CAA 90 bp AGTAGGGGGAGAATTTCTGCCGTTCAGCTTTCTTGCTCCCATTGGCCGCTGCCACAGAATTTAACATCATaGGGAACCAGAAACTCCTGT +
Preference number: 5 (lower is better)
Translates to: SRGRISAVQLSCSHWPLPQNLTS*GTRNSC
Trigger: ACAGGAGTTTCTGGTTCCCAATGATGTTAAATTCTG...TGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACGGCAGAAATTCTCCCCCTACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000213752.2
CDS-3UTR CAA 90 bp AGAAACCACAGGCAGACACAAGACAAGTTAAGGGGAAAAATAAGAGAGAAGATCCCCAGCACCCTCCGCTaGGTTCCCGATCTTAATATG +
Preference number: 5 (lower is better)
Translates to: RNHRQTQDKLRGKIREKIPSTLR*VPDLNM
Trigger: CATATTAAGATCGGGAACCAAGCGGAGGGTGCTGGG...GATCTTCTCTCTTATTTTTCCCCTTAACTTGTCTTGTGTCTGCCTGTGGTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000190428.7
CDS GCA 72 bp CTGGGTGATGCAAAGGGAACGGCGTGGCCTGAGAGCTaGTGGAGCTTGGTGACCTCTGCAGGGGTCACTGCT +
Preference number: 6 (lower is better)
Translates to: LGDAKGTAWPES*WSLVTSAGVTA
Trigger: AGCAGTGACCCCTGCAGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCACGCCGTTCCCTTTGCATCACCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000188396.2
ENSMUST00000190428.7
ENSMUST00000213156.2
ENSMUST00000213201.2
ENSMUST00000213752.2
ENSMUST00000214252.2
CDS CCA 72 bp CCTGGCACCACACTGGGTGATGCAAAGGGAACGGCGTaGCCTGAGAGCTGCTGGAGCTTGGTGACCTCTGCA +
Preference number: 6 (lower is better)
Translates to: PGTTLGDAKGTA*PESCWSLVTSA
Trigger: TGCAGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCACGCCGTTCCCTTTGCATCACCCAGTGTGGTGCCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000190428.7
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS CCA 72 bp GCTGGCACCACACTGGGTGATGCAAAGGGAACGGCGTaGCCTGAGAGCTGCTGGAGCTTGGTGACCTCTGCA +
Preference number: 6 (lower is better)
Translates to: AGTTLGDAKGTA*PESCWSLVTSA
Trigger: TGCAGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCACGCCGTTCCCTTTGCATCACCCAGTGTGGTGCCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213201.2
CDS TCA 72 bp GCCGAGAGGAGGACAGTACCTAGGGAGAGGCTCGGATaGTACGGGATTGTGGCTCCTTTGGGTGGGGACTCC +
Preference number: 6 (lower is better)
Translates to: AERRTVPRERLG*YGIVAPLGGDS
Trigger: GGAGTCCCCACCCAAAGGAGCCACAATCCCGTATCATCCGAGCCTCTCCCTAGGTACTGTCCTCCTCTCGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000185779.7
ENSMUST00000190428.7
ENSMUST00000213156.2
ENSMUST00000213201.2
ENSMUST00000213752.2
ENSMUST00000215656.2
CDS CCA 72 bp ACTGGCACCACACTGGGTGATGCAAAGGGAACGGCGTaGCCTGAGAGCTGCTGGAGCTTGGTGACCTCTGCA +
Preference number: 6 (lower is better)
Translates to: TGTTLGDAKGTA*PESCWSLVTSA
Trigger: TGCAGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCACGCCGTTCCCTTTGCATCACCCAGTGTGGTGCCAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185507.7
CDS TCA 72 bp GCCGAGAGGAGGACAGTACCTAGGGAGAGGCTCGGATaGTACGGGATTGTGGCTCCTTTGGGTGGGGACTCT +
Preference number: 6 (lower is better)
Translates to: AERRTVPRERLG*YGIVAPLGGDS
Trigger: AGAGTCCCCACCCAAAGGAGCCACAATCCCGTATCATCCGAGCCTCTCCCTAGGTACTGTCCTCCTCTCGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214252.2
CDS CCA 72 bp CCTTTGGGTGGGGACTCCAGAATAACAGCACAGATCTaGCGCACACACAGGATGATGGCGTCAGGCACCCCG +
Preference number: 6 (lower is better)
Translates to: PLGGDSRITAQI*RTHRMMASGTP
Trigger: CGGGGTGCCTGACGCCATCATCCTGTGTGTGCGCCAGATCTGTGCTGTTATTCTGGAGTCCCCACCCAAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000024260.14
ENSMUST00000185507.7
ENSMUST00000185779.7
ENSMUST00000190428.7
ENSMUST00000213156.2
ENSMUST00000213201.2
ENSMUST00000215656.2
CDS CAA 72 bp GGACAGTACCTAGGGAGAGGCTCGGATGATACGGGATaGTGGCTCCTTTGGGTGGGGACTCTCGGATCTCCT +
Preference number: 6 (lower is better)
Translates to: GQYLGRGSDDTG*WLLWVGTLGSP
Trigger: AGGAGATCCGAGAGTCCCCACCCAAAGGAGCCACAATCCCGTATCATCCGAGCCTCTCCCTAGGTACTGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214252.2
CDS GCA 72 bp CATTGGGAACCAGAAACTCCTGTGAGCTGGTCTGTGTaGTGGGATCCAGTCCTGGCACCACACTGGGTGATG +
Preference number: 6 (lower is better)
Translates to: HWEPETPVSWSV*WDPVLAPHWVM
Trigger: CATCACCCAGTGTGGTGCCAGGACTGGATCCCAGCACACAGACCAGCTCACAGGAGTTTCTGGTTCCCAATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000024260.14
ENSMUST00000188396.2
ENSMUST00000190428.7
ENSMUST00000213156.2
ENSMUST00000213752.2
CDS TCA 72 bp CTGCCTTCCCAATCAGTGATCCACACTCATCCAGCTTaGAGGCAATCATGGAGACCGCGTGGAAGACGGCAG +
Preference number: 6 (lower is better)
Translates to: LPSQSVIHTHPA*RQSWRPRGRRQ
Trigger: CTGCCGTCTTCCACGCGGTCTCCATGATTGCCTTCAAGCTGGATGAGTGTGGATCACTGATTGGGAAGGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189099.2
CDS TCA 72 bp TTGTGGCTCCTTTGGGTGGGGACTCTCGGATCTCCTTaGTTTTGGTGCCTGCCTTCCCAATCAGTGATCCAC +
Preference number: 6 (lower is better)
Translates to: LWLLWVGTLGSP*FWCLPSQSVIH
Trigger: GTGGATCACTGATTGGGAAGGCAGGCACCAAAATCAAGGAGATCCGAGAGTCCCCACCCAAAGGAGCCACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214252.2
CDS GCA 72 bp GCTTGGTTCCCGATCTTAATATGTGCCCCCGACATCTaGCGGATCTCGCTGATCTTGCTGCCATCATTGGGA +
Preference number: 6 (lower is better)
Translates to: AWFPILICAPDI*RISLILLPSLG
Trigger: TCCCAATGATGGCAGCAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACATATTAAGATCGGGAACCAAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000188396.2
CDS CAA 72 bp ATTGTGGCTCCTTTGGGTGGGGACTCTCGGATCTCCTaGATTTTGGTGCCTGCCTTCCCAATCAGTGATCCA +
Preference number: 6 (lower is better)
Translates to: IVAPLGGDSRIS*ILVPAFPISDP
Trigger: TGGATCACTGATTGGGAAGGCAGGCACCAAAATCAAGGAGATCCGAGAGTCCCCACCCAAAGGAGCCACAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214252.2