Pregenerated sensors for PCBP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056851Ensembl transcript IDs: ENSMUST00000077037.13, ENSMUST00000078404.15, ENSMUST00000108838.5, ENSMUST00000229061.2, ENSMUST00000229102.2, ENSMUST00000229219.2, ENSMUST00000229854.2, ENSMUST00000229958.2, ENSMUST00000230114.2, ENSMUST00000230539.2, ENSMUST00000230577.2, ENSMUST00000230728.2, ENSMUST00000231085.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTaGAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCCT | + |
|
Preference number: 1 (lower is better) Translates to: PWLWARRLTACDGSG*RTGVLLVPTVILVP Trigger: AGGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR TCA 90 bp | TTCTCTGCCCAAACCCTGGCTTTGGGCCAGACGACTAACAGCATGTaGTGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGT | + |
|
Preference number: 1 (lower is better) Translates to: FSAQTLALGQTTNSM*WLRLKNWGAVSPHC Trigger: ACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTTTGGGCAGAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR TCA 90 bp | TTGCACTTGGGAGGAGGGAAAGAAACTAAGGCTGGGTCATCCCTCTaGGGTTTCTCAGGTGGCAATGTAACTCATTTCTTTGTTCCTGTT | + |
|
Preference number: 1 (lower is better) Translates to: LHLGGGKETKAGSSL*GFSGGNVTHFFVPV Trigger: AACAGGAACAAAGAAATGAGTTACATTGCCACCTGAGAAACCTCAGAGGGATGACCCAGCCTTAGTTTCTTTCCCTCCTCCCAAGTGCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR TCA 90 bp | AATAGAAAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCGCTGGGTCATCCCTCTaGGGTTTCTCAGGTGGCAAT | + |
|
Preference number: 2 (lower is better) Translates to: NRKARLVSILSIPEHWRGAGSSL*GFSGGN Trigger: ATTGCCACCTGAGAAACCTCAGAGGGATGACCCAGC...GCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTCTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR CCA 90 bp | TATGCGCCACATAATCAACAGATAGATGGGGCTTTCTTAGCCTTAAGCCAGGCTTCCCCACTGTTATCTTaGTGCCTGGTAGGGGTGGGG | + |
|
Preference number: 2 (lower is better) Translates to: YAPHNQQIDGAFLALSQASPLLS*CLVGVG Trigger: CCCCACCCCTACCAGGCACCAAGATAACAGTGGGGA...AGCCTGGCTTAAGGCTAAGAAAGCCCCATCTATCTGTTGATTATGTGGCGCATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR CCA 90 bp | AATAGAAAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCTCTCTGCCCAAACCCTaGCTTTGGGCCAGACGACTA | + |
|
Preference number: 2 (lower is better) Translates to: NRKARLVSILSIPEHWRGSLPKP*LWARRL Trigger: TAGTCGTCTGGCCCAAAGCCAGGGTTTGGGCAGAGA...GCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTCTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR TCA 90 bp | AATAGAAAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCTGTGATGGCTCAGGCTaGAGAACTGGGGTGCTGTTA | + |
|
Preference number: 2 (lower is better) Translates to: NRKARLVSILSIPEHWRGCDGSG*RTGVLL Trigger: TAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACA...GCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTCTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR TCA 90 bp | TATGCGCCACATAATCAACAGATAGATGGGGCTTTCTTAGCCTTAAGCCAGGCTGCTGGGTCATCCCTCTaGGGTTTCTCAGGTGGCAAT | + |
|
Preference number: 2 (lower is better) Translates to: YAPHNQQIDGAFLALSQAAGSSL*GFSGGN Trigger: ATTGCCACCTGAGAAACCTCAGAGGGATGACCCAGC...AGCCTGGCTTAAGGCTAAGAAAGCCCCATCTATCTGTTGATTATGTGGCGCATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR GCA 90 bp | TATGCGCCACATAATCAACAGATAGATGGGGCTTTCTTAGCCTTAAGCCAGGCTCCACTGTTATCTTGGTaGCTGGTAGGGGTGGGGACT | + |
|
Preference number: 2 (lower is better) Translates to: YAPHNQQIDGAFLALSQAPLLSW*LVGVGT Trigger: AGTCCCCACCCCTACCAGGCACCAAGATAACAGTGG...AGCCTGGCTTAAGGCTAAGAAAGCCCCATCTATCTGTTGATTATGTGGCGCATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR TCA 90 bp | TATGCGCCACATAATCAACAGATAGATGGGGCTTTCTTAGCCTTAAGCCAGGCTTGTGATGGCTCAGGCTaGAGAACTGGGGTGCTGTTA | + |
|
Preference number: 2 (lower is better) Translates to: YAPHNQQIDGAFLALSQACDGSG*RTGVLL Trigger: TAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACA...AGCCTGGCTTAAGGCTAAGAAAGCCCCATCTATCTGTTGATTATGTGGCGCATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR GCA 90 bp | AATAGAAAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCGCCCAGCTCCATAAATaGACCAGCTGCTCTACAATC | + |
|
Preference number: 2 (lower is better) Translates to: NRKARLVSILSIPEHWRGAQLHK*TSCSTI Trigger: GATTGTAGAGCAGCTGGTGCATTTATGGAGCTGGGC...GCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTCTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR TCA 90 bp | AATAGAAAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCATGGATCATGGGTGGTaGACAGCAGGATTATGGATG | + |
|
Preference number: 2 (lower is better) Translates to: NRKARLVSILSIPEHWRGMDHGW*TAGLWM Trigger: CATCCATAATCCTGCTGTTCACCACCCATGATCCAT...GCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTCTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR TCA 90 bp | TATGCGCCACATAATCAACAGATAGATGGGGCTTTCTTAGCCTTAAGCCAGGCTACGACTAACAGCATGTaGTGGCTCAGGCTGAAGAAC | + |
|
Preference number: 2 (lower is better) Translates to: YAPHNQQIDGAFLALSQATTNSM*WLRLKN Trigger: GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGT...AGCCTGGCTTAAGGCTAAGAAAGCCCCATCTATCTGTTGATTATGTGGCGCATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR TCA 90 bp | TATGCGCCACATAATCAACAGATAGATGGGGCTTTCTTAGCCTTAAGCCAGGCTTATACTGTCTATCCCTaGACACTGGAGGGGCAGGTA | + |
|
Preference number: 2 (lower is better) Translates to: YAPHNQQIDGAFLALSQAYTVYP*TLEGQV Trigger: TACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATA...AGCCTGGCTTAAGGCTAAGAAAGCCCCATCTATCTGTTGATTATGTGGCGCATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR CCA 90 bp | TATGCGCCACATAATCAACAGATAGATGGGGCTTTCTTAGCCTTAAGCCAGGCTTTACCGAATAAGTTCTaGGGACACTGGCAGCTGTGG | + |
|
Preference number: 2 (lower is better) Translates to: YAPHNQQIDGAFLALSQALPNKF*GHWQLW Trigger: CCACAGCTGCCAGTGTCCCCAGAACTTATTCGGTAA...AGCCTGGCTTAAGGCTAAGAAAGCCCCATCTATCTGTTGATTATGTGGCGCATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR TCA 90 bp | AGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTATGGATCATGGGTGGTaGACAGCAGGATTATGGATG | + |
|
Preference number: 2 (lower is better) Translates to: RTRGSHSQVYYPYYPRVPMDHGW*TAGLWM Trigger: CATCCATAATCCTGCTGTTCACCACCCATGATCCAT...AGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR TCA 90 bp | AATAGAAAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCCCCTGTGAACAACCTTaGAATATAACCACTCCATGC | + |
|
Preference number: 2 (lower is better) Translates to: NRKARLVSILSIPEHWRGPCEQP*NITTPC Trigger: GCATGGAGTGGTTATATTTCAAGGTTGTTCACAGGG...GCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTCTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR GCA 90 bp | AATAGAAAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCACTGTTTACACATTTTaGACTTGGGAGGAGGGAAAG | + |
|
Preference number: 2 (lower is better) Translates to: NRKARLVSILSIPEHWRGTVYTF*TWEEGK Trigger: CTTTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGT...GCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTCTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR CCA 90 bp | TATGCGCCACATAATCAACAGATAGATGGGGCTTTCTTAGCCTTAAGCCAGGCTCCACGTAAGTCACTGTaGCATCCAGTTTCTATTCAC | + |
|
Preference number: 2 (lower is better) Translates to: YAPHNQQIDGAFLALSQAPRKSL*HPVSIH Trigger: GTGAATAGAAACTGGATGCCACAGTGACTTACGTGG...AGCCTGGCTTAAGGCTAAGAAAGCCCCATCTATCTGTTGATTATGTGGCGCATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR TCA 90 bp | TATAAAAATAACATCAGACAGGAACAACACCCACGTAAGTCACTGTGGCATCCAATGGATCATGGGTGGTaGACAGCAGGATTATGGATG | + |
|
Preference number: 2 (lower is better) Translates to: YKNNIRQEQHPRKSLWHPMDHGW*TAGLWM Trigger: CATCCATAATCCTGCTGTTCACCACCCATGATCCAT...TGGATGCCACAGTGACTTACGTGGGTGTTGTTCCTGTCTGATGTTATTTTTATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR TCA 90 bp | AATAGAAAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCGGTTTTCTTGGTGAATaGGTAGAGTGGTATAATACA | + |
|
Preference number: 2 (lower is better) Translates to: NRKARLVSILSIPEHWRGGFLGE*VEWYNT Trigger: TGTATTATACCACTCTACTCATTCACCAAGAAAACC...GCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTCTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR CCA 90 bp | TATGCGCCACATAATCAACAGATAGATGGGGCTTTCTTAGCCTTAAGCCAGGCTCTGAGGTTTCTCAGGTaGCAATGTAACTCATTTCTT | + |
|
Preference number: 2 (lower is better) Translates to: YAPHNQQIDGAFLALSQALRFLR*QCNSFL Trigger: AAGAAATGAGTTACATTGCCACCTGAGAAACCTCAG...AGCCTGGCTTAAGGCTAAGAAAGCCCCATCTATCTGTTGATTATGTGGCGCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR TCA 90 bp | TATGCGCCACATAATCAACAGATAGATGGGGCTTTCTTAGCCTTAAGCCAGGCTGGTTTTCTTGGTGAATaGGTAGAGTGGTATAATACA | + |
|
Preference number: 2 (lower is better) Translates to: YAPHNQQIDGAFLALSQAGFLGE*VEWYNT Trigger: TGTATTATACCACTCTACTCATTCACCAAGAAAACC...AGCCTGGCTTAAGGCTAAGAAAGCCCCATCTATCTGTTGATTATGTGGCGCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR TCA 72 bp | TGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTaGAGAACTGGGGTGCTGTTAGTCCCCACTGTTATC | + |
|
Preference number: 3 (lower is better) Translates to: WARRLTACDGSG*RTGVLLVPTVI Trigger: GATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR TCA 72 bp | CAAACCCTGGCTTTGGGCCAGACGACTAACAGCATGTaGTGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGT | + |
|
Preference number: 3 (lower is better) Translates to: QTLALGQTTNSM*WLRLKNWGAVS Trigger: ACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR CAA 90 bp | TATGCGCCACATAATCAACAGATAGATGGGGCTTTCTTAGCCTTAAGCCAGGCTGCCCAAACCCTGGCTTaGGGCCAGACGACTAACAGC | + |
|
Preference number: 3 (lower is better) Translates to: YAPHNQQIDGAFLALSQAAQTLA*GQTTNS Trigger: GCTGTTAGTCGTCTGGCCCAAAGCCAGGGTTTGGGC...AGCCTGGCTTAAGGCTAAGAAAGCCCCATCTATCTGTTGATTATGTGGCGCATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR CCA 72 bp | ACTCATTTCTTTGTTCCTGTTTCTCTGCCCAAACCCTaGCTTTGGGCCAGACGACTAACAGCATGTGATGGC | + |
|
Preference number: 3 (lower is better) Translates to: THFFVPVSLPKP*LWARRLTACDG Trigger: GCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTTTGGGCAGAGAAACAGGAACAAAGAAATGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR TCA 72 bp | TGGGGACTGTCATATTGTAACCCCTGTGAACAACCTTaGAATATAACCACTCCATGCAGGCCCAACTGTCGA | + |
|
Preference number: 3 (lower is better) Translates to: WGLSYCNPCEQP*NITTPCRPNCR Trigger: TCGACAGTTGGGCCTGCATGGAGTGGTTATATTTCAAGGTTGTTCACAGGGGTTACAATATGACAGTCCCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR CAA 90 bp | AATAGAAAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCTACTGTTTACACATTTaGCACTTGGGAGGAGGGAAA | + |
|
Preference number: 3 (lower is better) Translates to: NRKARLVSILSIPEHWRGYCLHI*HLGGGK Trigger: TTTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGTA...GCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTCTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| 3UTR-3UTR CAA 90 bp | AGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTAGTCCATTAATTCTATaGAAACTGAATCAGGGCTCT | + |
|
Preference number: 3 (lower is better) Translates to: RTRGSHSQVYYPYYPRVPSPLIL*KLNQGS Trigger: AGAGCCCTGATTCAGTTTCAATAGAATTAATGGACT...AGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| CDS-3UTR TCA 90 bp | TATGCGCCACATAATCAACAGATAGATGGGGCTTTCTTAGCCTTAAGCCAGGCTCCTCCAGGTCAGGGTTaGGGCACATGGACGGGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: YAPHNQQIDGAFLALSQAPPGQG*GTWTGW Trigger: CCACCCCGTCCATGTGCCTCAACCCTGACCTGGAGG...AGCCTGGCTTAAGGCTAAGAAAGCCCCATCTATCTGTTGATTATGTGGCGCATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 |
||
| CDS-3UTR TCA 90 bp | AGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTCCTCCAGGTCAGGGTTaGGGCACATGGACGGGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: RTRGSHSQVYYPYYPRVPPPGQG*GTWTGW Trigger: CCACCCCGTCCATGTGCCTCAACCCTGACCTGGAGG...AGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 |
||
| CDS-3UTR CCA 90 bp | AGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGGCACATGGACGGGGTaGTGTGGGGAAAGCTCGCAC | + |
|
Preference number: 4 (lower is better) Translates to: RTRGSHSQVYYPYYPRVPGTWTG*CGESSH Trigger: GTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCC...AGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 |
||
| CDS-3UTR GCA 90 bp | TATGCGCCACATAATCAACAGATAGATGGGGCTTTCTTAGCCTTAAGCCAGGCTCACTGTCGCTGCCTGTaGTGTACCTGTCCTGACCAC | + |
|
Preference number: 4 (lower is better) Translates to: YAPHNQQIDGAFLALSQAHCRCL*CTCPDH Trigger: GTGGTCAGGACAGGTACAGCACAGGCAGCGACAGTG...AGCCTGGCTTAAGGCTAAGAAAGCCCCATCTATCTGTTGATTATGTGGCGCATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 |
||
| CDS-3UTR GCA 90 bp | AGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTCACTGTCGCTGCCTGTaGTGTACCTGTCCTGACCAC | + |
|
Preference number: 4 (lower is better) Translates to: RTRGSHSQVYYPYYPRVPHCRCL*CTCPDH Trigger: GTGGTCAGGACAGGTACAGCACAGGCAGCGACAGTG...AGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 |
||
| CDS-3UTR CCA 90 bp | TATAAAAATAACATCAGACAGGAACAACACCCACGTAAGTCACTGTGGCATCCAGGCACATGGACGGGGTaGTGTGGGGAAAGCTCGCAC | + |
|
Preference number: 4 (lower is better) Translates to: YKNNIRQEQHPRKSLWHPGTWTG*CGESSH Trigger: GTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCC...TGGATGCCACAGTGACTTACGTGGGTGTTGTTCCTGTCTGATGTTATTTTTATA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 |
||
| CDS-3UTR GCA 90 bp | AATAGAAAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCCCTGTCCTGACCACCTaGAAAGATGACTGGAGAACT | + |
|
Preference number: 4 (lower is better) Translates to: NRKARLVSILSIPEHWRGPVLTT*KDDWRT Trigger: AGTTCTCCAGTCATCTTTGCAGGTGGTCAGGACAGG...GCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTCTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 |
||
| CDS-3UTR GCA 90 bp | AATAGAAAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGATGCATCCAAACCTaGACTGAATCCGGTGTTGCC | + |
|
Preference number: 4 (lower is better) Translates to: NRKARLVSILSIPEHWRGRCIQT*TESGVA Trigger: GGCAACACCGGATTCAGTGCAGGTTTGGATGCATCT...GCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTCTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108838.5 |
||
| CDS-3UTR GCA 90 bp | AGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTCCTGTCCTGACCACCTaGAAAGATGACTGGAGAACT | + |
|
Preference number: 4 (lower is better) Translates to: RTRGSHSQVYYPYYPRVPPVLTT*KDDWRT Trigger: AGTTCTCCAGTCATCTTTGCAGGTGGTCAGGACAGG...AGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 |
||
| CDS-3UTR GCA 90 bp | TATGCGCCACATAATCAACAGATAGATGGGGCTTTCTTAGCCTTAAGCCAGGCTAGATGCATCCAAACCTaGCCAATAGCCTTTCACCTC | + |
|
Preference number: 4 (lower is better) Translates to: YAPHNQQIDGAFLALSQARCIQT*PIAFHL Trigger: GAGGTGAAAGGCTATTGGGCAGGTTTGGATGCATCT...AGCCTGGCTTAAGGCTAAGAAAGCCCCATCTATCTGTTGATTATGTGGCGCATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 |
||
| CDS-3UTR CCA 90 bp | AGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTCAGCTTGGTCAAATCTaGCTGTGGAATGGCATACTG | + |
|
Preference number: 4 (lower is better) Translates to: RTRGSHSQVYYPYYPRVPQLGQI*LWNGIL Trigger: CAGTATGCCATTCCACAGCCAGATTTGACCAAGCTG...AGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| CDS-3UTR CCA 90 bp | TATAAAAATAACATCAGACAGGAACAACACCCACGTAAGTCACTGTGGCATCCACCAACTGGTGCAGCTTaGTCAAATCTGGCTGTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: YKNNIRQEQHPRKSLWHPPTGAA*SNLAVE Trigger: TTCCACAGCCAGATTTGACCAAGCTGCACCAGTTGG...TGGATGCCACAGTGACTTACGTGGGTGTTGTTCCTGTCTGATGTTATTTTTATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| CDS-3UTR CCA 90 bp | TATAAAAATAACATCAGACAGGAACAACACCCACGTAAGTCACTGTGGCATCCACAGCTTGGTCAAATCTaGCTGTGGAATGGCATACTG | + |
|
Preference number: 4 (lower is better) Translates to: YKNNIRQEQHPRKSLWHPQLGQI*LWNGIL Trigger: CAGTATGCCATTCCACAGCCAGATTTGACCAAGCTG...TGGATGCCACAGTGACTTACGTGGGTGTTGTTCCTGTCTGATGTTATTTTTATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| CDS TCA 90 bp | GGTGCAGCTTGGTCAACTCTAGAGGTGGTCCCTCCAGGTCAGGGTTaGGGCACATGGACGGGGTGGTGTGGGGAAAGCTCGCACTGTCGC | + |
|
Preference number: 5 (lower is better) Translates to: GAAWSTLEVVPPGQG*GTWTGWCGESSHCR Trigger: GCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCCTCAACCCTGACCTGGAGGGACCACCTCTAGAGTTGACCAAGCTGCACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000229219.2 |
||
| CDS GCA 90 bp | AAAGCTCGCACTGTCGCTGCCTGTGCTGTACCTGTCCTGACCACCTaGAAAGATGACTGGAGAACTGGAGGGCTTGGGCCGGTACGGGAT | + |
|
Preference number: 5 (lower is better) Translates to: KARTVAACAVPVLTT*KDDWRTGGLGPVRD Trigger: ATCCCGTACCGGCCCAAGCCCTCCAGTTCTCCAGTCATCTTTGCAGGTGGTCAGGACAGGTACAGCACAGGCAGCGACAGTGCGAGCTTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 12 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000229061.2 ENSMUST00000229102.2 ENSMUST00000229219.2 ENSMUST00000229854.2 ENSMUST00000229958.2 ENSMUST00000230114.2 ENSMUST00000230539.2 ENSMUST00000230577.2 ENSMUST00000230728.2 ENSMUST00000231085.2 |
||
| CDS-3UTR CAA 90 bp | AATAGAAAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCCCCTCCAGGTCAGGGTaGAGGCACATGGACGGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: NRKARLVSILSIPEHWRGPSRSG*RHMDGV Trigger: CACCCCGTCCATGTGCCTCAACCCTGACCTGGAGGG...GCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTCTATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 |
||
| CDS-3UTR CAA 90 bp | AGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTCCCTCCAGGTCAGGGTaGAGGCACATGGACGGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: RTRGSHSQVYYPYYPRVPPSRSG*RHMDGV Trigger: CACCCCGTCCATGTGCCTCAACCCTGACCTGGAGGG...AGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 |
||
| CDS-3UTR CAA 90 bp | TATGCGCCACATAATCAACAGATAGATGGGGCTTTCTTAGCCTTAAGCCAGGCTGCCAACTGGTGCAGCTaGGTCAAATCTGGCTGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: YAPHNQQIDGAFLALSQAANWCS*VKSGCG Trigger: TCCACAGCCAGATTTGACCAAGCTGCACCAGTTGGC...AGCCTGGCTTAAGGCTAAGAAAGCCCCATCTATCTGTTGATTATGTGGCGCATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| CDS-3UTR CAA 90 bp | AGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCAACTGGTGCAGCTaGGTCAAATCTGGCTGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: RTRGSHSQVYYPYYPRVPANWCS*VKSGCG Trigger: TCCACAGCCAGATTTGACCAAGCTGCACCAGTTGGC...AGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||
| CDS-3UTR CAA 90 bp | TATAAAAATAACATCAGACAGGAACAACACCCACGTAAGTCACTGTGGCATCCAGCCAACTGGTGCAGCTaGGTCAAATCTGGCTGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: YKNNIRQEQHPRKSLWHPANWCS*VKSGCG Trigger: TCCACAGCCAGATTTGACCAAGCTGCACCAGTTGGC...TGGATGCCACAGTGACTTACGTGGGTGTTGTTCCTGTCTGATGTTATTTTTATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000077037.13 ENSMUST00000078404.15 ENSMUST00000108838.5 |
||