Pregenerated sensors for PCBP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051695

Ensembl transcript IDs: ENSMUST00000053015.7

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 72 bp	AGCCACACTGGGTGGCGGGCACGACCAGCCGAAGTGTaGCCGGGGGCCTGCTGGCCGCCGTACTGTTGGTCA	+
Preference number: 6 (lower is better) Translates to: SHTGWRARPAEV*PGACWPPYCWS Trigger: TGACCAACAGTACGGCGGCCAGCAGGCCCCCGGTCACACTTCGGCTGGTCGTGCCCGCCACCCAGTGTGGCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053015.7
CDS GCA 72 bp	ACCAGGCAGATCTGCTTCACACACTCGGTGACGGACTaGGGCACGCCGGCGATAGTGATAGCCCGCTCGGTC	+
Preference number: 6 (lower is better) Translates to: TRQICFTHSVTD*GTPAIVIARSV Trigger: GACCGAGCGGGCTATCACTATCGCCGGCGTGCCGCAGTCCGTCACCGAGTGTGTGAAGCAGATCTGCCTGGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053015.7
CDS CAA 90 bp	TCCTCCAGCTTGTCGATGATCATGGCGAAGGCCTTAAAGATGGCATaGGTAGGCCCAGTCAGCGTGATGATCCTCTCCGGGCAGTTCCCC	+
Preference number: 6 (lower is better) Translates to: SSSLSMIMAKALKMA*VGPVSVMILSGQFP Trigger: GGGGAACTGCCCGGAGAGGATCATCACGCTGACTGGGCCTACCAATGCCATCTTTAAGGCCTTCGCCATGATCATCGACAAGCTGGAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053015.7
CDS CAA 72 bp	TTGTCGATGATCATGGCGAAGGCCTTAAAGATGGCATaGGTAGGCCCAGTCAGCGTGATGATCCTCTCCGGG	+
Preference number: 6 (lower is better) Translates to: LSMIMAKALKMA*VGPVSVMILSG Trigger: CCCGGAGAGGATCATCACGCTGACTGGGCCTACCAATGCCATCTTTAAGGCCTTCGCCATGATCATCGACAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053015.7
CDS CAA 72 bp	CTGTTGGTCATGGAGCTGTTGATATCTTCCTCCAGCTaGTCGATGATCATGGCGAAGGCCTTAAAGATGGCA	+
Preference number: 6 (lower is better) Translates to: LLVMELLISSSS*SMIMAKALKMA Trigger: TGCCATCTTTAAGGCCTTCGCCATGATCATCGACAAGCTGGAGGAAGATATCAACAGCTCCATGACCAACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053015.7

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