Pregenerated sensors for PCBD2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021496

Ensembl transcript IDs: ENSMUST00000021958.6

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	ACCACTGTGCATCTGAAGACATGGCCGCCCTGCTCGCGCCCGGGCTaGGCAGCGCCGCCAGCCACCGCCCCGCGCTACGCGCTCCCACCG	+
Preference number: 5 (lower is better) Translates to: TTVHLKTWPPCSRPG*AAPPATAPRYALPP Trigger: CGGTGGGAGCGCGTAGCGCGGGGCGGTGGCTGGCGGCGCTGCGCAGCCCGGGCGCGAGCAGGGCGGCCATGTCTTCAGATGCACAGTGGT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021958.6
CDS GCA 90 bp	TCTCCTCTGCCGTCAACCACTGTGCATCTGAAGACATGGCCGCCCTaGTCGCGCCCGGGCTGCGCAGCGCCGCCAGCCACCGCCCCGCGC	+
Preference number: 5 (lower is better) Translates to: SPLPSTTVHLKTWPP*SRPGCAAPPATAPR Trigger: GCGCGGGGCGGTGGCTGGCGGCGCTGCGCAGCCCGGGCGCGAGCAGGGCGGCCATGTCTTCAGATGCACAGTGGTTGACGGCAGAGGAGA 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021958.6
CDS GCA 72 bp	CATCTGAAGACATGGCCGCCCTGCTCGCGCCCGGGCTaGGCAGCGCCGCCAGCCACCGCCCCGCGCTACGCG	+
Preference number: 6 (lower is better) Translates to: HLKTWPPCSRPG*AAPPATAPRYA Trigger: CGCGTAGCGCGGGGCGGTGGCTGGCGGCGCTGCGCAGCCCGGGCGCGAGCAGGGCGGCCATGTCTTCAGATG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021958.6
CDS GCA 72 bp	CCGTCAACCACTGTGCATCTGAAGACATGGCCGCCCTaGTCGCGCCCGGGCTGCGCAGCGCCGCCAGCCACC	+
Preference number: 6 (lower is better) Translates to: PSTTVHLKTWPP*SRPGCAAPPAT Trigger: GGTGGCTGGCGGCGCTGCGCAGCCCGGGCGCGAGCAGGGCGGCCATGTCTTCAGATGCACAGTGGTTGACGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021958.6
CDS CCA 72 bp	TCTCCTCTGCCGTCAACCACTGTGCATCTGAAGACATaGCCGCCCTGCTCGCGCCCGGGCTGCGCAGCGCCG	+
Preference number: 6 (lower is better) Translates to: SPLPSTTVHLKT*PPCSRPGCAAP Trigger: CGGCGCTGCGCAGCCCGGGCGCGAGCAGGGCGGCCATGTCTTCAGATGCACAGTGGTTGACGGCAGAGGAGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021958.6

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