Pregenerated sensors for PCBD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020098Ensembl transcript IDs: ENSMUST00000020298.8, ENSMUST00000218005.2
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGAACTCTACAGAAAAAGGGAGAGCTTATTCAAATTAGTGTAACATaGCAGAGCCCCAGTGAGGAGAGTGGCACAGAGAAAGGTCTCAGT | + |
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Preference number: 1 (lower is better) Translates to: GTLQKKGELIQISVT*QSPSEESGTEKGLS Trigger: ACTGAGACCTTTCTCTGTGCCACTCTCCTCACTGGGGCTCTGCCATGTTACACTAATTTGAATAAGCTCTCCCTTTTTCTGTAGAGTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| 3UTR TCA 90 bp | ACTAGAAAGGGTAGAAAAGGAACAAGAAGCAGCCTGGAACATTACTaGGGCTGGGAACTCTACAGAAAAAGGGAGAGCTTATTCAAATTA | + |
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Preference number: 1 (lower is better) Translates to: TRKGRKGTRSSLEHY*GWELYRKRESLFKL Trigger: TAATTTGAATAAGCTCTCCCTTTTTCTGTAGAGTTCCCAGCCTCAGTAATGTTCCAGGCTGCTTCTTGTTCCTTTTCTACCCTTTCTAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| 3UTR CAA 90 bp | GAGGTGGTGGTCACTGAAAGAGTCAGGGAGCAAGGGCCAGCCTCCTaGGTTCCCTTCCTAGGTTCCTCCTCCAGTCACTCCTTCCCCCAA | + |
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Preference number: 2 (lower is better) Translates to: EVVVTERVREQGPAS*VPFLGSSSSHSFPQ Trigger: TTGGGGGAAGGAGTGACTGGAGGAGGAACCTAGGAAGGGAACCAAGGAGGCTGGCCCTTGCTCCCTGACTCTTTCAGTGACCACCACCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| 3UTR-3UTR CAA 90 bp | GCCTGGAACATTACTGAGGCTGGGAACTCTACAGAAAAAGGGAGAGCTTATTCATCTCAGTCCCTGCTGTaGACATTGACATCCCTTCTG | + |
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Preference number: 3 (lower is better) Translates to: AWNITEAGNSTEKGRAYSSQSLL*TLTSLL Trigger: CAGAAGGGATGTCAATGTCAACAGCAGGGACTGAGA...TGAATAAGCTCTCCCTTTTTCTGTAGAGTTCCCAGCCTCAGTAATGTTCCAGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| 3UTR-3UTR CAA 90 bp | CAGAAAAAGGGAGAGCTTATTCAAATTAGTGTAACATGGCAGAGCCCCAGTGAGTCCCTGCTGTTGACATaGACATCCCTTCTGCATAGG | + |
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Preference number: 3 (lower is better) Translates to: QKKGELIQISVTWQSPSESLLLT*TSLLHR Trigger: CCTATGCAGAAGGGATGTCAATGTCAACAGCAGGGA...CTCACTGGGGCTCTGCCATGTTACACTAATTTGAATAAGCTCTCCCTTTTTCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| 3UTR TCA 72 bp | GGTAGAAAAGGAACAAGAAGCAGCCTGGAACATTACTaGGGCTGGGAACTCTACAGAAAAAGGGAGAGCTTA | + |
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Preference number: 3 (lower is better) Translates to: GRKGTRSSLEHY*GWELYRKRESL Trigger: TAAGCTCTCCCTTTTTCTGTAGAGTTCCCAGCCTCAGTAATGTTCCAGGCTGCTTCTTGTTCCTTTTCTACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| 3UTR CCA 72 bp | CAGAAAAAGGGAGAGCTTATTCAAATTAGTGTAACATaGCAGAGCCCCAGTGAGGAGAGTGGCACAGAGAAA | + |
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Preference number: 3 (lower is better) Translates to: QKKGELIQISVT*QSPSEESGTEK Trigger: TTTCTCTGTGCCACTCTCCTCACTGGGGCTCTGCCATGTTACACTAATTTGAATAAGCTCTCCCTTTTTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| 3UTR CCA 72 bp | GAACTAGAAAGGGTAGAAAAGGAACAAGAAGCAGCCTaGAACATTACTGAGGCTGGGAACTCTACAGAAAAA | + |
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Preference number: 3 (lower is better) Translates to: ELERVEKEQEAA*NITEAGNSTEK Trigger: TTTTTCTGTAGAGTTCCCAGCCTCAGTAATGTTCCAGGCTGCTTCTTGTTCCTTTTCTACCCTTTCTAGTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| CDS-3UTR CCA 90 bp | AGAGTCAGGGAGCAAGGGCCAGCCTCCTTGGTTCCCTTCCTAGGTTCCTCCTCCAGGTTTGGCAGCAGCTaGTCTCGCTCCTCGGCGCTC | + |
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Preference number: 4 (lower is better) Translates to: RVREQGPASLVPFLGSSSRFGSS*SRSSAL Trigger: GAGCGCCGAGGAGCGAGACCAGCTGCTGCCAAACCT...GGAGGAGGAACCTAGGAAGGGAACCAAGGAGGCTGGCCCTTGCTCCCTGACTCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| CDS-3UTR CCA 90 bp | AGGGAGCAAGGGCCAGCCTCCTTGGTTCCCTTCCTAGGTTCCTCCTCCAGTCACAACCACTCGGGATGGTaGTCCAGCTTTTCAGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: REQGPASLVPFLGSSSSHNHSGW*SSFSAC Trigger: GCAGGCTGAAAAGCTGGACCACCATCCCGAGTGGTT...GTGACTGGAGGAGGAACCTAGGAAGGGAACCAAGGAGGCTGGCCCTTGCTCCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020298.8 ENSMUST00000218005.2 |
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| 3UTR CAA 72 bp | GTCACTGAAAGAGTCAGGGAGCAAGGGCCAGCCTCCTaGGTTCCCTTCCTAGGTTCCTCCTCCAGTCACTCC | + |
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Preference number: 4 (lower is better) Translates to: VTERVREQGPAS*VPFLGSSSSHS Trigger: GGAGTGACTGGAGGAGGAACCTAGGAAGGGAACCAAGGAGGCTGGCCCTTGCTCCCTGACTCTTTCAGTGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| CDS-3UTR TCA 90 bp | AGGGAGCAAGGGCCAGCCTCCTTGGTTCCCTTCCTAGGTTCCTCCTCCAGTCACCGGCGACTTGTTCGATaGAGCTGGCCAGGTTTATAT | + |
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Preference number: 4 (lower is better) Translates to: REQGPASLVPFLGSSSSHRRLVR*SWPGLY Trigger: ATATAAACCTGGCCAGCTTCATCGAACAAGTCGCCG...GTGACTGGAGGAGGAACCTAGGAAGGGAACCAAGGAGGCTGGCCCTTGCTCCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020298.8 ENSMUST00000218005.2 |
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| 3UTR CAA 72 bp | GGAGAGTGGCACAGAGAAAGGTCTCAGTCCCTGCTGTaGACATTGACATCCCTTCTGCATAGGGAGGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: GEWHRERSQSLL*TLTSLLHREVV Trigger: CACCACCTCCCTATGCAGAAGGGATGTCAATGTCAACAGCAGGGACTGAGACCTTTCTCTGTGCCACTCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| CDS-3UTR CCA 90 bp | CTAGGTTCCTCCTCCAGTCACTCCTTCCCCCAAGCAAATAAGAGTCAGGGTAGAAACCACTCGGGATGGTaGTCCAGCTTTTCAGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: LGSSSSHSFPQANKSQGRNHSGW*SSFSAC Trigger: GCAGGCTGAAAAGCTGGACCACCATCCCGAGTGGTT...TCTACCCTGACTCTTATTTGCTTGGGGGAAGGAGTGACTGGAGGAGGAACCTAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020298.8 ENSMUST00000218005.2 |
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| 3UTR CAA 72 bp | TGGCACAGAGAAAGGTCTCAGTCCCTGCTGTTGACATaGACATCCCTTCTGCATAGGGAGGTGGTGGTCACT | + |
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Preference number: 4 (lower is better) Translates to: WHRERSQSLLLT*TSLLHREVVVT Trigger: AGTGACCACCACCTCCCTATGCAGAAGGGATGTCAATGTCAACAGCAGGGACTGAGACCTTTCTCTGTGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| CDS-3UTR TCA 90 bp | CCCTTCCTAGGTTCCTCCTCCAGTCACTCCTTCCCCCAAGCAAATAAGAGTCAGCGGCGACTTGTTCGATaGAGCTGGCCAGGTTTATAT | + |
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Preference number: 4 (lower is better) Translates to: PFLGSSSSHSFPQANKSQRRLVR*SWPGLY Trigger: ATATAAACCTGGCCAGCTTCATCGAACAAGTCGCCG...CTGACTCTTATTTGCTTGGGGGAAGGAGTGACTGGAGGAGGAACCTAGGAAGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020298.8 ENSMUST00000218005.2 |
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| CDS-3UTR GCA 90 bp | CCCTTCCTAGGTTCCTCCTCCAGTCACTCCTTCCCCCAAGCAAATAAGAGTCAGTCCAGCTTTTCAGCCTaGAGGGCTACTCTTGTCATG | + |
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Preference number: 4 (lower is better) Translates to: PFLGSSSSHSFPQANKSQSSFSA*RATLVM Trigger: CATGACAAGAGTAGCCCTGCAGGCTGAAAAGCTGGA...CTGACTCTTATTTGCTTGGGGGAAGGAGTGACTGGAGGAGGAACCTAGGAAGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020298.8 ENSMUST00000218005.2 |
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| CDS-3UTR GCA 90 bp | TTGGTTCCCTTCCTAGGTTCCTCCTCCAGTCACTCCTTCCCCCAAGCAAATAAGTCCAGCTTTTCAGCCTaGAGGGCTACTCTTGTCATG | + |
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Preference number: 4 (lower is better) Translates to: LVPFLGSSSSHSFPQANKSSFSA*RATLVM Trigger: CATGACAAGAGTAGCCCTGCAGGCTGAAAAGCTGGA...CTTATTTGCTTGGGGGAAGGAGTGACTGGAGGAGGAACCTAGGAAGGGAACCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020298.8 ENSMUST00000218005.2 |
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| CDS-3UTR CCA 90 bp | GAGCTTGTTTTATTAGTAGGATCTGAATTGGGCTTTTATGTCATGCTTTATCACCACAGCCCTCAGGTTTaGCAGCAGCTGGTCTCGCTC | + |
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Preference number: 4 (lower is better) Translates to: ELVLLVGSELGFYVMLYHHSPQV*QQLVSL Trigger: GAGCGAGACCAGCTGCTGCCAAACCTGAGGGCTGTG...GTGATAAAGCATGACATAAAAGCCCAATTCAGATCCTACTAATAAAACAAGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| CDS-3UTR CAA 90 bp | CAGGGAGCAAGGGCCAGCCTCCTTGGTTCCCTTCCTAGGTTCCTCCTCCAGTCACCACAGCCCTCAGGTTaGGCAGCAGCTGGTCTCGCT | + |
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Preference number: 5 (lower is better) Translates to: QGARASLLGSLPRFLLQSPQPSG*AAAGLA Trigger: AGCGAGACCAGCTGCTGCCAAACCTGAGGGCTGTGG...TGACTGGAGGAGGAACCTAGGAAGGGAACCAAGGAGGCTGGCCCTTGCTCCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| CDS CCA 90 bp | AGCATCTCGGCCTTCTACTTCATTCCACCCCACAGCCCTCAGGTTTaGCAGCAGCTGGTCTCGCTCCTCGGCGCTCAGCCTGTGTGCCTT | + |
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Preference number: 5 (lower is better) Translates to: SISAFYFIPPHSPQV*QQLVSLLGAQPVCL Trigger: AAGGCACACAGGCTGAGCGCCGAGGAGCGAGACCAGCTGCTGCCAAACCTGAGGGCTGTGGGGTGGAATGAAGTAGAAGGCCGAGATGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| CDS-3UTR CAA 90 bp | GTCAGGGAGCAAGGGCCAGCCTCCTTGGTTCCCTTCCTAGGTTCCTCCTCCAGTCATAGACACGGCGACTaGTTCGATGAAGCTGGCCAG | + |
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Preference number: 5 (lower is better) Translates to: VREQGPASLVPFLGSSSSHRHGD*FDEAGQ Trigger: CTGGCCAGCTTCATCGAACAAGTCGCCGTGTCTATG...ACTGGAGGAGGAACCTAGGAAGGGAACCAAGGAGGCTGGCCCTTGCTCCCTGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020298.8 ENSMUST00000218005.2 |
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| CDS-3UTR CAA 90 bp | CAAGGGCCAGCCTCCTTGGTTCCCTTCCTAGGTTCCTCCTCCAGTCACTCCTTCCATAGACACGGCGACTaGTTCGATGAAGCTGGCCAG | + |
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Preference number: 5 (lower is better) Translates to: QGPASLVPFLGSSSSHSFHRHGD*FDEAGQ Trigger: CTGGCCAGCTTCATCGAACAAGTCGCCGTGTCTATG...GAAGGAGTGACTGGAGGAGGAACCTAGGAAGGGAACCAAGGAGGCTGGCCCTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020298.8 ENSMUST00000218005.2 |
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| CDS-3UTR CAA 90 bp | GAGCAAGGGCCAGCCTCCTTGGTTCCCTTCCTAGGTTCCTCCTCCAGTCACTCCGTGATATGGACCTTGTaGTACACGTTAAACCACTCG | + |
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Preference number: 5 (lower is better) Translates to: EQGPASLVPFLGSSSSHSVIWTL*YTLNHS Trigger: CGAGTGGTTTAACGTGTACAACAAGGTCCATATCAC...GGAGTGACTGGAGGAGGAACCTAGGAAGGGAACCAAGGAGGCTGGCCCTTGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020298.8 ENSMUST00000218005.2 |
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| CDS-3UTR CAA 90 bp | AGGGCCAGCCTCCTTGGTTCCCTTCCTAGGTTCCTCCTCCAGTCACTCCTTCCCAAGGTGATATGGACCTaGTTGTACACGTTAAACCAC | + |
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Preference number: 5 (lower is better) Translates to: RASLLGSLPRFLLQSLLPKVIWT*LYTLNH Trigger: GTGGTTTAACGTGTACAACAAGGTCCATATCACCTT...GGGAAGGAGTGACTGGAGGAGGAACCTAGGAAGGGAACCAAGGAGGCTGGCCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020298.8 ENSMUST00000218005.2 |
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| CDS-3UTR CAA 90 bp | GTCACTGAAAGAGTCAGGGAGCAAGGGCCAGCCTCCTTGGTTCCCTTCCTAGGTAAGGTGATATGGACCTaGTTGTACACGTTAAACCAC | + |
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Preference number: 5 (lower is better) Translates to: VTERVREQGPASLVPFLGKVIWT*LYTLNH Trigger: GTGGTTTAACGTGTACAACAAGGTCCATATCACCTT...ACCTAGGAAGGGAACCAAGGAGGCTGGCCCTTGCTCCCTGACTCTTTCAGTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| CDS GCA 90 bp | TTGTACACGTTAAACCACTCGGGATGGTGGTCCAGCTTTTCAGCCTaGAGGGCTACTCTTGTCATGAAGCCAAAAGCCCTGTTGAAGTCT | + |
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Preference number: 5 (lower is better) Translates to: LYTLNHSGWWSSFSA*RATLVMKPKALLKS Trigger: AGACTTCAACAGGGCTTTTGGCTTCATGACAAGAGTAGCCCTGCAGGCTGAAAAGCTGGACCACCATCCCGAGTGGTTTAACGTGTACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| CDS CCA 90 bp | AAGCTGGCCAGGTTTATATCCCGTTCCGAAAGACCGGCACATTCATaGGTGCTCAAGGTGATATGGACCTTGTTGTACACGTTAAACCAC | + |
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Preference number: 5 (lower is better) Translates to: KLARFISRSERPAHS*VLKVIWTLLYTLNH Trigger: GTGGTTTAACGTGTACAACAAGGTCCATATCACCTTGAGCACCCATGAATGTGCCGGTCTTTCGGAACGGGATATAAACCTGGCCAGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020298.8 ENSMUST00000218005.2 |
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| CDS-3UTR CAA 90 bp | GTAGGATCTGAATTGGGCTTTTATGTCATGCTTTATCACAGCTACCTTGGAAAAAAGCCAAAAGCCCTGTaGAAGTCTTTAAAATGGAAC | + |
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Preference number: 5 (lower is better) Translates to: VGSELGFYVMLYHSYLGKKPKAL*KSLKWN Trigger: GTTCCATTTTAAAGACTTCAACAGGGCTTTTGGCTT...TTTTCCAAGGTAGCTGTGATAAAGCATGACATAAAAGCCCAATTCAGATCCTAC 39% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| CDS CCA 72 bp | GCCTTCTACTTCATTCCACCCCACAGCCCTCAGGTTTaGCAGCAGCTGGTCTCGCTCCTCGGCGCTCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: AFYFIPPHSPQV*QQLVSLLGAQP Trigger: AGGCTGAGCGCCGAGGAGCGAGACCAGCTGCTGCCAAACCTGAGGGCTGTGGGGTGGAATGAAGTAGAAGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| CDS GCA 72 bp | TTAAACCACTCGGGATGGTGGTCCAGCTTTTCAGCCTaGAGGGCTACTCTTGTCATGAAGCCAAAAGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: LNHSGWWSSFSA*RATLVMKPKAL Trigger: CAGGGCTTTTGGCTTCATGACAAGAGTAGCCCTGCAGGCTGAAAAGCTGGACCACCATCCCGAGTGGTTTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| CDS CCA 72 bp | AGGTTTATATCCCGTTCCGAAAGACCGGCACATTCATaGGTGCTCAAGGTGATATGGACCTTGTTGTACACG | + |
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Preference number: 6 (lower is better) Translates to: RFISRSERPAHS*VLKVIWTLLYT Trigger: CGTGTACAACAAGGTCCATATCACCTTGAGCACCCATGAATGTGCCGGTCTTTCGGAACGGGATATAAACCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020298.8 ENSMUST00000218005.2 |
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| CDS CAA 72 bp | CCAAAAGCCCTGTTGAAGTCTTTAAAATGGAACTGCTaGAAGATAGCATCTCGGCCTTCTACTTCATTCCAC | + |
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Preference number: 6 (lower is better) Translates to: PKALLKSLKWNC*KIASRPSTSFH Trigger: GTGGAATGAAGTAGAAGGCCGAGATGCTATCTTCAAGCAGTTCCATTTTAAAGACTTCAACAGGGCTTTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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| CDS GCA 72 bp | AAGCCAAAAGCCCTGTTGAAGTCTTTAAAATGGAACTaGTTGAAGATAGCATCTCGGCCTTCTACTTCATTC | + |
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Preference number: 6 (lower is better) Translates to: KPKALLKSLKWN*LKIASRPSTSF Trigger: GAATGAAGTAGAAGGCCGAGATGCTATCTTCAAGCAGTTCCATTTTAAAGACTTCAACAGGGCTTTTGGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020298.8 |
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