RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PBXIP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042613

Ensembl transcript IDs: ENSMUST00000038942.10, ENSMUST00000130858.8, ENSMUST00000145753.2, ENSMUST00000146630.8

Found 206 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACACTGCGGAGAATGACCTGGCTTGAGGCCACCCCACCTGGACTGTaGGACAATTGGTGGCTGGACTCAAGGCTAGGCTCCTTGGGGAAG +
Preference number: 1 (lower is better)
Translates to: TLRRMTWLEATPPGL*DNWWLDSRLGSLGK
Trigger: CTTCCCCAAGGAGCCTAGCCTTGAGTCCAGCCACCAATTGTCTCACAGTCCAGGTGGGGTGGCCTCAAGCCAGGTCATTCTCCGCAGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR CCA 90 bp TGTTCCTTGCATTTAGGGACCACCTCAAGTGACAGAGCCCCGCCATaGTGGGACAGCTCAGGTGGGGAGGTGAAAGCCGCAAGAGGCATG +
Preference number: 1 (lower is better)
Translates to: CSLHLGTTSSDRAPP*WDSSGGEVKAARGM
Trigger: CATGCCTCTTGCGGCTTTCACCTCCCCACCTGAGCTGTCCCACCATGGCGGGGCTCTGTCACTTGAGGTGGTCCCTAAATGCAAGGAACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR TCA 90 bp TCCAGACCCAGCACCCCAACATGCCAGCCTACCTGCCTCCGGCCTTaGGCTTTCACCCAGCCACCAAGGTCACCACATCTGTATAAACAG +
Preference number: 1 (lower is better)
Translates to: SRPSTPTCQPTCLRP*AFTQPPRSPHLYKQ
Trigger: CTGTTTATACAGATGTGGTGACCTTGGTGGCTGGGTGAAAGCTCAAGGCCGGAGGCAGGTAGGCTGGCATGTTGGGGTGCTGGGTCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR TCA 90 bp CTGAGGATAAGAACACCACACCACACTGCGGAGAATGACCTGGCTTaGGGCCACCCCACCTGGACTGTGAGACAATTGGTGGCTGGACTC +
Preference number: 1 (lower is better)
Translates to: LRIRTPHHTAENDLA*GHPTWTVRQLVAGL
Trigger: GAGTCCAGCCACCAATTGTCTCACAGTCCAGGTGGGGTGGCCTCAAGCCAGGTCATTCTCCGCAGTGTGGTGTGGTGTTCTTATCCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR CCA 90 bp CTGGAGACTGAAGTTGCAGACATTTGTGAGCTACCATGTGGGTGCTaGGAATCAAACCTGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCA +
Preference number: 1 (lower is better)
Translates to: LETEVADICELPCGC*ESNLGLLEEQPVPS
Trigger: TGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGTTTGATTCCCAGCACCCACATGGTAGCTCACAAATGTCTGCAACTTCAGTCTCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR TCA 90 bp TCACCATTGCCCAGTAAGCTTACAGTCCTTAATCCCCTCCTTAATTaGCCTGACCTGTGTGGTCACTGCCCCCTAGAGTCCCTGGGAGAG +
Preference number: 1 (lower is better)
Translates to: SPLPSKLTVLNPLLN*PDLCGHCPLESLGE
Trigger: CTCTCCCAGGGACTCTAGGGGGCAGTGACCACACAGGTCAGGTCAATTAAGGAGGGGATTAAGGACTGTAAGCTTACTGGGCAATGGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR GCA 90 bp CCAGCAGGCCCCTACATGTCACTTAGTACCCAGGGCCTTTATCTTTaGATATGTCTGCTTAGACAGTTCAGCAGCGCCAACTATGGCCTT +
Preference number: 1 (lower is better)
Translates to: PAGPYMSLSTQGLYL*ICLLRQFSSANYGL
Trigger: AAGGCCATAGTTGGCGCTGCTGAACTGTCTAAGCAGACATATGCAAAGATAAAGGCCCTGGGTACTAAGTGACATGTAGGGGCCTGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR GCA 90 bp TTGTTTTTGCGTGTATGTTTGTGTACCGTGTGTGTGTGTGCCTGGTaGCTACAGGGCCAGAAGAGAACATCAGATCCCTGGAGACTGAAG +
Preference number: 1 (lower is better)
Translates to: LFLRVCLCTVCVCAW*LQGQKRTSDPWRLK
Trigger: CTTCAGTCTCCAGGGATCTGATGTTCTCTTCTGGCCCTGTAGGCACCAGGCACACACACACACGGTACACAAACATACACGCAAAAACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR TCA 90 bp AGAGGAACTCTGAGACTCCAAAATTTATTATCCAACATGAGCTCTTaGCATGGAAACCAGAGGCCAGAGAGCCCTGTACCAACACCATCT +
Preference number: 1 (lower is better)
Translates to: RGTLRLQNLLSNMSS*HGNQRPESPVPTPS
Trigger: AGATGGTGTTGGTACAGGGCTCTCTGGCCTCTGGTTTCCATGTCAAGAGCTCATGTTGGATAATAAATTTTGGAGTCTCAGAGTTCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR GCA 90 bp TGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCAGCCAGGGTGATAGGCTCTaGTGTGGACCCAGGATAGCC +
Preference number: 2 (lower is better)
Translates to: WGFWKSSLCPQRLSHPSSQGDRL*CGPRIA
Trigger: GGCTATCCTGGGTCCACAGCAGAGCCTATCACCCTG...GCTGGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR GCA 90 bp ACCTGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCTGGCTCCCTCACCTCTaGAGACCCAGGTTAGCGTGT +
Preference number: 2 (lower is better)
Translates to: TWGFWKSSLCPQRLSHPSWLPHL*RPRLAC
Trigger: ACACGCTAACCTGGGTCTGCAGAGGTGAGGGAGCCA...GGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR CCA 90 bp GGCTGGCCTCAAACTCAGAAATCAGCCTGCCTCTGCCTCCCAAGGGCTGGGATTAGGGTGTCTGGGGTGTaGGGTGGTGACCAGGGGCAG +
Preference number: 2 (lower is better)
Translates to: GWPQTQKSACLCLPRAGIRVSGV*GGDQGQ
Trigger: CTGCCCCTGGTCACCACCCCACACCCCAGACACCCT...AATCCCAGCCCTTGGGAGGCAGAGGCAGGCTGATTTCTGAGTTTGAGGCCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR CCA 90 bp GGTGAAAGCCGCAAGAGGCATGGTGAGGACTCCTCAGGCTTAGGGATAGCTGTCCCAGGCATCTTGAGCTaGGTGCATGCCAAGGCCGGC +
Preference number: 2 (lower is better)
Translates to: GESRKRHGEDSSGLGIAVPGILS*VHAKAG
Trigger: GCCGGCCTTGGCATGCACCCAGCTCAAGATGCCTGG...GACAGCTATCCCTAAGCCTGAGGAGTCCTCACCATGCCTCTTGCGGCTTTCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR TCA 90 bp CCCCCTAGAGTCCCTGGGAGAGTTCCAGAGCTAGAAGCCCAGTGTGCTACCAATGAGAATGACCTGGCTTaGGGCCACCCCACCTGGACT +
Preference number: 2 (lower is better)
Translates to: PPRVPGRVPELEAQCATNENDLA*GHPTWT
Trigger: AGTCCAGGTGGGGTGGCCTCAAGCCAGGTCATTCTC...ATTGGTAGCACACTGGGCTTCTAGCTCTGGAACTCTCCCAGGGACTCTAGGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR GCA 90 bp CAGCTCAGGTGGGGAGGTGAAAGCCGCAAGAGGCATGGTGAGGACTCCTCAGGCCAGTGCAGGGCCAAGTaGGTTGCTCTCTTCTGTGAA +
Preference number: 2 (lower is better)
Translates to: QLRWGGESRKRHGEDSSGQCRAK*VALFCE
Trigger: TTCACAGAAGAGAGCAACGCACTTGGCCCTGCACTG...GCCTGAGGAGTCCTCACCATGCCTCTTGCGGCTTTCACCTCCCCACCTGAGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR GCA 90 bp TACCTGCCTCCGGCCTTGAGCTTTCACCCAGCCACCAAGGTCACCACATCTGTATGGAAGAGCAGCCTGTaGCCTCAGCGGCTGAGCCAT +
Preference number: 2 (lower is better)
Translates to: YLPPALSFHPATKVTTSVWKSSL*PQRLSH
Trigger: ATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCA...TACAGATGTGGTGACCTTGGTGGCTGGGTGAAAGCTCAAGGCCGGAGGCAGGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR CCA 90 bp AGAGTCCCTGGGAGAGTTCCAGAGCTAGAAGCCCAGTGTGCTACCAATGGCGTACTGCGGAGAATGACCTaGCTTGAGGCCACCCCACCT +
Preference number: 2 (lower is better)
Translates to: RVPGRVPELEAQCATNGVLRRMT*LEATPP
Trigger: AGGTGGGGTGGCCTCAAGCCAGGTCATTCTCCGCAG...TACGCCATTGGTAGCACACTGGGCTTCTAGCTCTGGAACTCTCCCAGGGACTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR CCA 90 bp TACCTGCCTCCGGCCTTGAGCTTTCACCCAGCCACCAAGGTCACCACATCTGTACAAACCTGGGGCTTCTaGAAGAGCAGCCTGTGCCCT +
Preference number: 2 (lower is better)
Translates to: YLPPALSFHPATKVTTSVQTWGF*KSSLCP
Trigger: AGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGTTTG...TACAGATGTGGTGACCTTGGTGGCTGGGTGAAAGCTCAAGGCCGGAGGCAGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR TCA 90 bp TACCTGCCTCCGGCCTTGAGCTTTCACCCAGCCACCAAGGTCACCACATCTGTAAACCTGCCTTCCTTCTaGGGGACACTGGTCCAGAGA +
Preference number: 2 (lower is better)
Translates to: YLPPALSFHPATKVTTSVNLPSF*GTLVQR
Trigger: TCTCTGGACCAGTGTCCCTCAGAAGGAAGGCAGGTT...TACAGATGTGGTGACCTTGGTGGCTGGGTGAAAGCTCAAGGCCGGAGGCAGGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR GCA 90 bp ACCTGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCCAGAAACAGAATGTCTaGTTCCTTGCTTCACTGACT +
Preference number: 2 (lower is better)
Translates to: TWGFWKSSLCPQRLSHPSQKQNV*FLASLT
Trigger: AGTCAGTGAAGCAAGGAAGCAGACATTCTGTTTCTG...GGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR GCA 90 bp TACCTGCCTCCGGCCTTGAGCTTTCACCCAGCCACCAAGGTCACCACATCTGTATGTGTGTGTGCCTGGTaGCTACAGGGCCAGAAGAGA +
Preference number: 2 (lower is better)
Translates to: YLPPALSFHPATKVTTSVCVCAW*LQGQKR
Trigger: TCTCTTCTGGCCCTGTAGGCACCAGGCACACACACA...TACAGATGTGGTGACCTTGGTGGCTGGGTGAAAGCTCAAGGCCGGAGGCAGGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR GCA 90 bp CCCCCTAGAGTCCCTGGGAGAGTTCCAGAGCTAGAAGCCCAGTGTGCTACCAATGCAGTGCCTAGATTGTaGCTAAACACCAGCGTGGTG +
Preference number: 2 (lower is better)
Translates to: PPRVPGRVPELEAQCATNAVPRL*LNTSVV
Trigger: CACCACGCTGGTGTTTAGGCACAATCTAGGCACTGC...ATTGGTAGCACACTGGGCTTCTAGCTCTGGAACTCTCCCAGGGACTCTAGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR GCA 90 bp TGGGAATCAAACCTGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGGAATGTCTGCTTCCTTaGTTCACTGACTCCATTCCC +
Preference number: 2 (lower is better)
Translates to: WESNLGLLEEQPVPSAAEECLLP*FTDSIP
Trigger: GGGAATGGAGTCAGTGAAGCAAGGAAGCAGACATTC...CTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGTTTGATTCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR GCA 90 bp CAGAGAGCCCTGTACCAACACCATCTAGGAAACCAAGGCAGGCCTGTGAATCCCACTCAGAAATCAGCCTaGCTCTGCCTCCCAAGGGCT +
Preference number: 2 (lower is better)
Translates to: QRALYQHHLGNQGRPVNPTQKSA*LCLPRA
Trigger: AGCCCTTGGGAGGCAGAGGCAGGCTGATTTCTGAGT...GGGATTCACAGGCCTGCCTTGGTTTCCTAGATGGTGTTGGTACAGGGCTCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR TCA 90 bp AGCCCCGCCATGGTGGGACAGCTCAGGTGGGGAGGTGAAAGCCGCAAGAGGCATAAAATGACAGCTCTCTaGCTTCAGAATAAGAGTCCT +
Preference number: 2 (lower is better)
Translates to: SPAMVGQLRWGGESRKRHKMTAL*LQNKSP
Trigger: AGGACTCTTATTCTGAAGTCAGAGAGCTGTCATTTT...ATGCCTCTTGCGGCTTTCACCTCCCCACCTGAGCTGTCCCACCATGGCGGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR TCA 90 bp TGTGTGTGCCTGGTGCCTACAGGGCCAGAAGAGAACATCAGATCCCTGGAGACTGCTTCCTTGCTTCACTaGCTCCATTCCCTTCAGCTC +
Preference number: 2 (lower is better)
Translates to: CVCLVPTGPEENIRSLETASLLH*LHSLQL
Trigger: GAGCTGAAGGGAATGGAGTCAGTGAAGCAAGGAAGC...AGTCTCCAGGGATCTGATGTTCTCTTCTGGCCCTGTAGGCACCAGGCACACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR CCA 90 bp TGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCAGCCTGTTTAAACATTTGTaGAATGAGCCACCCTTTCTA +
Preference number: 2 (lower is better)
Translates to: WGFWKSSLCPQRLSHPSSLFKHL*NEPPFL
Trigger: TAGAAAGGGTGGCTCATTCCACAAATGTTTAAACAG...GCTGGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR CAA 90 bp TGCCTACAGGGCCAGAAGAGAACATCAGATCCCTGGAGACTGAAGTaGCAGACATTTGTGAGCTACCATGTGGGTGCTGGGAATCAAACC +
Preference number: 2 (lower is better)
Translates to: CLQGQKRTSDPWRLK*QTFVSYHVGAGNQT
Trigger: GGTTTGATTCCCAGCACCCACATGGTAGCTCACAAATGTCTGCAACTTCAGTCTCCAGGGATCTGATGTTCTCTTCTGGCCCTGTAGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR TCA 90 bp GAATGTCTGCTTCCTTGCTTCACTGACTCCATTCCCTTCAGCTCTCTTTCTGAGCGTTGCTCTCTTCTGTaGAGGTCATTCAAGGGCACC +
Preference number: 2 (lower is better)
Translates to: ECLLPCFTDSIPFSSLSERCSLL*RSFKGT
Trigger: GGTGCCCTTGAATGACCTTCACAGAAGAGAGCAACG...CTCAGAAAGAGAGCTGAAGGGAATGGAGTCAGTGAAGCAAGGAAGCAGACATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR GCA 72 bp GGGAATCAAACCTGGGGCTTCTGGAAGAGCAGCCTGTaGCCTCAGCGGCTGAGCCATCCCTCCAGCACCACA +
Preference number: 3 (lower is better)
Translates to: GNQTWGFWKSSL*PQRLSHPSSTT
Trigger: TGTGGTGCTGGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGTTTGATTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR TCA 72 bp AGCACCCCAACATGCCAGCCTACCTGCCTCCGGCCTTaGGCTTTCACCCAGCCACCAAGGTCACCACATCTG +
Preference number: 3 (lower is better)
Translates to: STPTCQPTCLRP*AFTQPPRSPHL
Trigger: CAGATGTGGTGACCTTGGTGGCTGGGTGAAAGCTCAAGGCCGGAGGCAGGTAGGCTGGCATGTTGGGGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR CCA 72 bp CATTTAGGGACCACCTCAAGTGACAGAGCCCCGCCATaGTGGGACAGCTCAGGTGGGGAGGTGAAAGCCGCA +
Preference number: 3 (lower is better)
Translates to: HLGTTSSDRAPP*WDSSGGEVKAA
Trigger: TGCGGCTTTCACCTCCCCACCTGAGCTGTCCCACCATGGCGGGGCTCTGTCACTTGAGGTGGTCCCTAAATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR TCA 72 bp GTACCAGTGCAGGGCCAAGTGCGTTGCTCTCTTCTGTaGAGGTCATTCAAGGGCACCAACGAGCCAGGAGGG +
Preference number: 3 (lower is better)
Translates to: VPVQGQVRCSLL*RSFKGTNEPGG
Trigger: CCCTCCTGGCTCGTTGGTGCCCTTGAATGACCTTCACAGAAGAGAGCAACGCACTTGGCCCTGCACTGGTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR TCA 72 bp TGCAAGGTGTTCCTTGCATTTAGGGACCACCTCAAGTaGCAGAGCCCCGCCATGGTGGGACAGCTCAGGTGG +
Preference number: 3 (lower is better)
Translates to: CKVFLAFRDHLK*QSPAMVGQLRW
Trigger: CCACCTGAGCTGTCCCACCATGGCGGGGCTCTGTCACTTGAGGTGGTCCCTAAATGCAAGGAACACCTTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR TCA 72 bp AGAATGACCTGGCTTGAGGCCACCCCACCTGGACTGTaGGACAATTGGTGGCTGGACTCAAGGCTAGGCTCC +
Preference number: 3 (lower is better)
Translates to: RMTWLEATPPGL*DNWWLDSRLGS
Trigger: GGAGCCTAGCCTTGAGTCCAGCCACCAATTGTCTCACAGTCCAGGTGGGGTGGCCTCAAGCCAGGTCATTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR CCA 72 bp TTTGTGAGCTACCATGTGGGTGCTGGGAATCAAACCTaGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGG +
Preference number: 3 (lower is better)
Translates to: FVSYHVGAGNQT*GFWKSSLCPQR
Trigger: CCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGTTTGATTCCCAGCACCCACATGGTAGCTCACAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR TCA 72 bp AGAACACCACACCACACTGCGGAGAATGACCTGGCTTaGGGCCACCCCACCTGGACTGTGAGACAATTGGTG +
Preference number: 3 (lower is better)
Translates to: RTPHHTAENDLA*GHPTWTVRQLV
Trigger: CACCAATTGTCTCACAGTCCAGGTGGGGTGGCCTCAAGCCAGGTCATTCTCCGCAGTGTGGTGTGGTGTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR TCA 72 bp TCTGAGGATAAGAACACCACACCACACTGCGGAGAATaGCCTGGCTTGAGGCCACCCCACCTGGACTGTGAG +
Preference number: 3 (lower is better)
Translates to: SEDKNTTPHCGE*PGLRPPHLDCE
Trigger: CTCACAGTCCAGGTGGGGTGGCCTCAAGCCAGGTCATTCTCCGCAGTGTGGTGTGGTGTTCTTATCCTCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR CAA 90 bp CCCCCTAGAGTCCCTGGGAGAGTTCCAGAGCTAGAAGCCCAGTGTGCTACCAATTGGACTGTGAGACAATaGGTGGCTGGACTCAAGGCT +
Preference number: 3 (lower is better)
Translates to: PPRVPGRVPELEAQCATNWTVRQ*VAGLKA
Trigger: AGCCTTGAGTCCAGCCACCAATTGTCTCACAGTCCA...ATTGGTAGCACACTGGGCTTCTAGCTCTGGAACTCTCCCAGGGACTCTAGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR GCA 72 bp GAATGGATGGGAAGGCCGAGTGCAGTGCCTAGATTGTaGCTAAACACCAGCGTGGTGACTGCAAGGTGTTCC +
Preference number: 3 (lower is better)
Translates to: EWMGRPSAVPRL*LNTSVVTARCS
Trigger: GGAACACCTTGCAGTCACCACGCTGGTGTTTAGGCACAATCTAGGCACTGCACTCGGCCTTCCCATCCATTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR TCA 72 bp CCCAGTAAGCTTACAGTCCTTAATCCCCTCCTTAATTaGCCTGACCTGTGTGGTCACTGCCCCCTAGAGTCC +
Preference number: 3 (lower is better)
Translates to: PSKLTVLNPLLN*PDLCGHCPLES
Trigger: GGACTCTAGGGGGCAGTGACCACACAGGTCAGGTCAATTAAGGAGGGGATTAAGGACTGTAAGCTTACTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR CCA 72 bp GAAGTTGCAGACATTTGTGAGCTACCATGTGGGTGCTaGGAATCAAACCTGGGGCTTCTGGAAGAGCAGCCT +
Preference number: 3 (lower is better)
Translates to: EVADICELPCGC*ESNLGLLEEQP
Trigger: AGGCTGCTCTTCCAGAAGCCCCAGGTTTGATTCCCAGCACCCACATGGTAGCTCACAAATGTCTGCAACTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR CCA 72 bp TTGCGTGTATGTTTGTGTACCGTGTGTGTGTGTGCCTaGTGCCTACAGGGCCAGAAGAGAACATCAGATCCC +
Preference number: 3 (lower is better)
Translates to: LRVCLCTVCVCA*CLQGQKRTSDP
Trigger: GGGATCTGATGTTCTCTTCTGGCCCTGTAGGCACCAGGCACACACACACACGGTACACAAACATACACGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR GCA 72 bp CTCCCAAGGGCTGGGATTAAAGGCGTGCATCACCATTaGCCAGTAAGCTTACAGTCCTTAATCCCCTCCTTA +
Preference number: 3 (lower is better)
Translates to: LPRAGIKGVHHH*PVSLQSLIPSL
Trigger: TAAGGAGGGGATTAAGGACTGTAAGCTTACTGGGCAATGGTGATGCACGCCTTTAATCCCAGCCCTTGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR GCA 72 bp ACTGAAGTTGCAGACATTTGTGAGCTACCATGTGGGTaGTGGGAATCAAACCTGGGGCTTCTGGAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: TEVADICELPCG*WESNLGLLEEQ
Trigger: CTGCTCTTCCAGAAGCCCCAGGTTTGATTCCCAGCACCCACATGGTAGCTCACAAATGTCTGCAACTTCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR CAA 90 bp GAATGTCTGCTTCCTTGCTTCACTGACTCCATTCCCTTCAGCTCTCTTTCTGAGAGTGCAGTGCCTAGATaGTGCCTAAACACCAGCGTG +
Preference number: 3 (lower is better)
Translates to: ECLLPCFTDSIPFSSLSESAVPR*CLNTSV
Trigger: CACGCTGGTGTTTAGGCACAATCTAGGCACTGCACT...CTCAGAAAGAGAGCTGAAGGGAATGGAGTCAGTGAAGCAAGGAAGCAGACATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR CAA 90 bp CAGAGAGCCCTGTACCAACACCATCTAGGAAACCAAGGCAGGCCTGTGAATCCCAAAAGGGATCGATTCTaGTGTGGCAGAAACAGAATG +
Preference number: 3 (lower is better)
Translates to: QRALYQHHLGNQGRPVNPKRDRF*CGRNRM
Trigger: CATTCTGTTTCTGCCACACAAGAATCGATCCCTTTT...GGGATTCACAGGCCTGCCTTGGTTTCCTAGATGGTGTTGGTACAGGGCTCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR CCA 72 bp CCTCCAGCACCACACAGCAGACTGTTTAAACATTTGTaGAATGAGCCACCCTTTCTACCTGTCTTGTCTAGC +
Preference number: 3 (lower is better)
Translates to: PPAPHSRLFKHL*NEPPFLPVLSS
Trigger: GCTAGACAAGACAGGTAGAAAGGGTGGCTCATTCCACAAATGTTTAAACAGTCTGCTGTGTGGTGCTGGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR-3UTR CAA 90 bp TACATGTCACTTAGTACCCAGGGCCTTTATCTTTGCATATGTCTGCTTAGACAGATAACTCCAGGCATCTaGAGCTGGGTGCATGCCAAG +
Preference number: 3 (lower is better)
Translates to: YMSLSTQGLYLCICLLRQITPGI*SWVHAK
Trigger: CTTGGCATGCACCCAGCTCAAGATGCCTGGAGTTAT...CTGTCTAAGCAGACATATGCAAAGATAAAGGCCCTGGGTACTAAGTGACATGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR TCA 72 bp CTGAGACTCCAAAATTTATTATCCAACATGAGCTCTTaGCATGGAAACCAGAGGCCAGAGAGCCCTGTACCA +
Preference number: 3 (lower is better)
Translates to: LRLQNLLSNMSS*HGNQRPESPVP
Trigger: TGGTACAGGGCTCTCTGGCCTCTGGTTTCCATGTCAAGAGCTCATGTTGGATAATAAATTTTGGAGTCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp ACCTGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCAGGGCCAGGCCCTCCTaGCGGGCACAGTCGGCCACA +
Preference number: 4 (lower is better)
Translates to: TWGFWKSSLCPQRLSHPSRARPS*RAQSAT
Trigger: TGTGGCCGACTGTGCCCGGCAGGAGGGCCTGGCCCT...GGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp ACCTGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCGAGGCCAGCTCCTGCTaGCGCACAGGGGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: TWGFWKSSLCPQRLSHPSEASSC*RTGASS
Trigger: GGAGCTGGCCCCTGTGCGGCAGCAGGAGCTGGCCTC...GGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp TGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCAGCACAGAGGCCAGCTCCTaGTGCCGCACAGGGGCCAGC +
Preference number: 4 (lower is better)
Translates to: WGFWKSSLCPQRLSHPSSTEASS*CRTGAS
Trigger: GCTGGCCCCTGTGCGGCAGCAGGAGCTGGCCTCTGT...GCTGGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR TCA 90 bp TGGGAATCAAACCTGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGTCAGCCAGGCCAGGGTaGGCTGGGGCTCCCCGGCCA +
Preference number: 4 (lower is better)
Translates to: WESNLGLLEEQPVPSAAESARPG*AGAPRP
Trigger: TGGCCGGGGAGCCCCAGCTCACCCTGGCCTGGCTGA...CTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGTTTGATTCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR TCA 90 bp ACCTGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCCAGTGCTCAGCCTTCTaGTCCCTCTGCCCACCGCGC +
Preference number: 4 (lower is better)
Translates to: TWGFWKSSLCPQRLSHPSQCSAF*SLCPPR
Trigger: GCGCGGTGGGCAGAGGGATCAGAAGGCTGAGCACTG...GGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp TGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCAGCAGCTGTTTGGTCAGCTaGCCGGCCCAGGGCAGCCGA +
Preference number: 4 (lower is better)
Translates to: WGFWKSSLCPQRLSHPSSSCLVS*PAQGSR
Trigger: TCGGCTGCCCTGGGCCGGGCAGCTGACCAAACAGCT...GCTGGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp TGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCAGCCCCTCGCCCTTGGCCTaGTCCTCCACATCTACGGGT +
Preference number: 4 (lower is better)
Translates to: WGFWKSSLCPQRLSHPSSPSPLA*SSTSTG
Trigger: ACCCGTAGATGTGGAGGACCAGGCCAAGGGCGAGGG...GCTGGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp ACCTGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCTCCCACCCCACTCCCTaGGACTCTGGGTGTGAGGCT +
Preference number: 4 (lower is better)
Translates to: TWGFWKSSLCPQRLSHPSSHPTP*DSGCEA
Trigger: AGCCTCACACCCAGAGTCCCAGGGAGTGGGGTGGGA...GGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR TCA 90 bp GGCTGGCCTCAAACTCAGAAATCAGCCTGCCTCTGCCTCCCAAGGGCTGGGATTTACCACGGGCTGGGATaGGCTGGGCTCCCGGCCCCT +
Preference number: 4 (lower is better)
Translates to: GWPQTQKSACLCLPRAGIYHGLG*AGLPAP
Trigger: AGGGGCCGGGAGCCCAGCTCATCCCAGCCCGTGGTA...AATCCCAGCCCTTGGGAGGCAGAGGCAGGCTGATTTCTGAGTTTGAGGCCAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp CAGCTCAGGTGGGGAGGTGAAAGCCGCAAGAGGCATGGTGAGGACTCCTCAGGCCCTGGTGGGAGGTCTTaGCCTGCTGCAGGGCTTCCC +
Preference number: 4 (lower is better)
Translates to: QLRWGGESRKRHGEDSSGPGGRS*PAAGLP
Trigger: GGGAAGCCCTGCAGCAGGGCAAGACCTCCCACCAGG...GCCTGAGGAGTCCTCACCATGCCTCTTGCGGCTTTCACCTCCCCACCTGAGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp CAGCTCAGGTGGGGAGGTGAAAGCCGCAAGAGGCATGGTGAGGACTCCTCAGGCTGCGGATGGCGGCTGTaGTCTTCCCTGGGCCCCACA +
Preference number: 4 (lower is better)
Translates to: QLRWGGESRKRHGEDSSGCGWRL*SSLGPT
Trigger: TGTGGGGCCCAGGGAAGAGCACAGCCGCCATCCGCA...GCCTGAGGAGTCCTCACCATGCCTCTTGCGGCTTTCACCTCCCCACCTGAGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp ACCTGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCCGGGCCCTTAGCTGCTaGAGTTCTGATTCTAGGGCC +
Preference number: 4 (lower is better)
Translates to: TWGFWKSSLCPQRLSHPSRALSC*SSDSRA
Trigger: GGCCCTAGAATCAGAACTGCAGCAGCTAAGGGCCCG...GGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp ACCTGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCGGCCTTGCCATCCTGTaGATCTCCACCCCAGTTGAG +
Preference number: 4 (lower is better)
Translates to: TWGFWKSSLCPQRLSHPSGLAIL*ISTPVE
Trigger: CTCAACTGGGGTGGAGATCCACAGGATGGCAAGGCC...GGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp CCCCCTAGAGTCCCTGGGAGAGTTCCAGAGCTAGAAGCCCAGTGTGCTACCAATCAGGCCAGGGTGAGCTaGGGCTCCCCGGCCAGCATC +
Preference number: 4 (lower is better)
Translates to: PPRVPGRVPELEAQCATNQARVS*GSPASI
Trigger: GATGCTGGCCGGGGAGCCCCAGCTCACCCTGGCCTG...ATTGGTAGCACACTGGGCTTCTAGCTCTGGAACTCTCCCAGGGACTCTAGGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp GGCTGGCCTCAAACTCAGAAATCAGCCTGCCTCTGCCTCCCAAGGGCTGGGATTTGGGAGGTCTTGCCCTaGTGCAGGGCTTCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: GWPQTQKSACLCLPRAGIWEVLP*CRASRS
Trigger: GCTCCGGGAAGCCCTGCAGCAGGGCAAGACCTCCCA...AATCCCAGCCCTTGGGAGGCAGAGGCAGGCTGATTTCTGAGTTTGAGGCCAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp TGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCAGCATTCTGGGTCCATCCTaGGTTCTGGGCCCAGAGTCT +
Preference number: 4 (lower is better)
Translates to: WGFWKSSLCPQRLSHPSSILGPS*VLGPES
Trigger: AGACTCTGGGCCCAGAACCCAGGATGGACCCAGAAT...GCTGGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp TGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCAGCAGCAGCCGGATATCCTaGTTCTCCTTGGCCAGCTTG +
Preference number: 4 (lower is better)
Translates to: WGFWKSSLCPQRLSHPSSSSRIS*FSLASL
Trigger: CAAGCTGGCCAAGGAGAACCAGGATATCCGGCTGCT...GCTGGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR TCA 90 bp ACCTGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCTCCAAAGTAAGCAGGTaGGAGGGGCAGCTGTTTGGT +
Preference number: 4 (lower is better)
Translates to: TWGFWKSSLCPQRLSHPSSKVSR*EGQLFG
Trigger: ACCAAACAGCTGCCCCTCTCACCTGCTTACTTTGGA...GGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp AGCCCCGCCATGGTGGGACAGCTCAGGTGGGGAGGTGAAAGCCGCAAGAGGCATTCCTGCGAATCTTCCTaGACCACTGTGTCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: SPAMVGQLRWGGESRKRHSCESS*TTVSPG
Trigger: CCCTGGAGACACAGTGGTCCAGGAAGATTCGCAGGA...ATGCCTCTTGCGGCTTTCACCTCCCCACCTGAGCTGTCCCACCATGGCGGGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp CAGCTCAGGTGGGGAGGTGAAAGCCGCAAGAGGCATGGTGAGGACTCCTCAGGCGGCTCCTGCCCCTTGTaGCCTTGTTCTTTAGTGGCC +
Preference number: 4 (lower is better)
Translates to: QLRWGGESRKRHGEDSSGGSCPL*PCSLVA
Trigger: GGCCACTAAAGAACAAGGCCACAAGGGGCAGGAGCC...GCCTGAGGAGTCCTCACCATGCCTCTTGCGGCTTTCACCTCCCCACCTGAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp GGTGAAAGCCGCAAGAGGCATGGTGAGGACTCCTCAGGCTTAGGGATAGCTGTCAGAGGGGCAGCTGTTTaGTCAGCTGCCCGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: GESRKRHGEDSSGLGIAVRGAAV*SAARPR
Trigger: CCTGGGCCGGGCAGCTGACCAAACAGCTGCCCCTCT...GACAGCTATCCCTAAGCCTGAGGAGTCCTCACCATGCCTCTTGCGGCTTTCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR CAA 72 bp CAGCACCCCAACATGCCAGCCTACCTGCCTCCGGCCTaGAGCTTTCACCCAGCCACCAAGGTCACCACATCT +
Preference number: 4 (lower is better)
Translates to: QHPNMPAYLPPA*SFHPATKVTTS
Trigger: AGATGTGGTGACCTTGGTGGCTGGGTGAAAGCTCAAGGCCGGAGGCAGGTAGGCTGGCATGTTGGGGTGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR TCA 90 bp GCCCTGTACCAACACCATCTAGGAAACCAAGGCAGGCCTGTGAATCCCCATCTCACAGTCGGCCACACCTaGACAGCCCTGAGGGGGTCG +
Preference number: 4 (lower is better)
Translates to: ALYQHHLGNQGRPVNPHLTVGHT*TALRGS
Trigger: CGACCCCCTCAGGGCTGTTCAGGTGTGGCCGACTGT...GAGATGGGGATTCACAGGCCTGCCTTGGTTTCCTAGATGGTGTTGGTACAGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp GGCTGGCCTCAAACTCAGAAATCAGCCTGCCTCTGCCTCCCAAGGGCTGGGATTAGCTGCCACTGTCTCTaGAGCTCCTGCCTTAGGGCC +
Preference number: 4 (lower is better)
Translates to: GWPQTQKSACLCLPRAGISCHCL*SSCLRA
Trigger: GGCCCTAAGGCAGGAGCTGCAGAGACAGTGGCAGCT...AATCCCAGCCCTTGGGAGGCAGAGGCAGGCTGATTTCTGAGTTTGAGGCCAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp GGTGAAAGCCGCAAGAGGCATGGTGAGGACTCCTCAGGCTTAGGGATAGCTGTCCAGGTCCTGTGTGTCTaGTCCGAGGCTCGTCGCCAC +
Preference number: 4 (lower is better)
Translates to: GESRKRHGEDSSGLGIAVQVLCV*SEARRH
Trigger: GTGGCGACGAGCCTCGGACCAGACACACAGGACCTG...GACAGCTATCCCTAAGCCTGAGGAGTCCTCACCATGCCTCTTGCGGCTTTCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp GGCTGGCCTCAAACTCAGAAATCAGCCTGCCTCTGCCTCCCAAGGGCTGGGATTCCATGCTCTGCAGGCTaGGGACACTGTCTGGTGGGA +
Preference number: 4 (lower is better)
Translates to: GWPQTQKSACLCLPRAGIPCSAG*GHCLVG
Trigger: TCCCACCAGACAGTGTCCCCAGCCTGCAGAGCATGG...AATCCCAGCCCTTGGGAGGCAGAGGCAGGCTGATTTCTGAGTTTGAGGCCAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR TCA 90 bp TGGGAATCAAACCTGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCAGGAAACACATGTTaGGGGAGATGCCCAGCTCTC +
Preference number: 4 (lower is better)
Translates to: WESNLGLLEEQPVPSAAEPGNTC*GRCPAL
Trigger: GAGAGCTGGGCATCTCCCTCAACATGTGTTTCCTGG...CTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGTTTGATTCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp TACCTGCCTCCGGCCTTGAGCTTTCACCCAGCCACCAAGGTCACCACATCTGTACTGGGGTCTGGCTCCTaGCCCTTGTGGCCTTGTTCT +
Preference number: 4 (lower is better)
Translates to: YLPPALSFHPATKVTTSVLGSGS*PLWPCS
Trigger: AGAACAAGGCCACAAGGGGCAGGAGCCAGACCCCAG...TACAGATGTGGTGACCTTGGTGGCTGGGTGAAAGCTCAAGGCCGGAGGCAGGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp AGAGTCCCTGGGAGAGTTCCAGAGCTAGAAGCCCAGTGTGCTACCAATGGCGTACTCTGCAGGTCCCAGTaGACAGACCCCAGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: RVPGRVPELEAQCATNGVLCRSQ*TDPSSC
Trigger: GCAGCTGCTGGGGTCTGTGCACTGGGACCTGCAGAG...TACGCCATTGGTAGCACACTGGGCTTCTAGCTCTGGAACTCTCCCAGGGACTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp GGCTGGCCTCAAACTCAGAAATCAGCCTGCCTCTGCCTCCCAAGGGCTGGGATTTGGGGTCCTGTCGCTTaGTGTCCTTTCTGCTCCCAG +
Preference number: 4 (lower is better)
Translates to: GWPQTQKSACLCLPRAGIWGPVA*CPFCSQ
Trigger: CTGGGAGCAGAAAGGACAGCAAGCGACAGGACCCCA...AATCCCAGCCCTTGGGAGGCAGAGGCAGGCTGATTTCTGAGTTTGAGGCCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp CCCCCTAGAGTCCCTGGGAGAGTTCCAGAGCTAGAAGCCCAGTGTGCTACCAATCCTCCTCCAGCCCTTTaGGCTGGTGCAACAGGCTCT +
Preference number: 4 (lower is better)
Translates to: PPRVPGRVPELEAQCATNPPPAL*AGATGS
Trigger: AGAGCCTGTTGCACCAGCCCAAAGGGCTGGAGGAGG...ATTGGTAGCACACTGGGCTTCTAGCTCTGGAACTCTCCCAGGGACTCTAGGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR TCA 90 bp GGCTGGCCTCAAACTCAGAAATCAGCCTGCCTCTGCCTCCCAAGGGCTGGGATTCACCCAGCTATTATCTaGGTCTGGGCAGGAGGCCAT +
Preference number: 4 (lower is better)
Translates to: GWPQTQKSACLCLPRAGIHPAII*VWAGGH
Trigger: ATGGCCTCCTGCCCAGACTCAGATAATAGCTGGGTG...AATCCCAGCCCTTGGGAGGCAGAGGCAGGCTGATTTCTGAGTTTGAGGCCAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR TCA 90 bp CAGCTCAGGTGGGGAGGTGAAAGCCGCAAGAGGCATGGTGAGGACTCCTCAGGCCTTCTCCTTCTTTCGTaGCCTCTTCTTCAGGGCCTT +
Preference number: 4 (lower is better)
Translates to: QLRWGGESRKRHGEDSSGLLLLS*PLLQGL
Trigger: AAGGCCCTGAAGAAGAGGTCACGAAAGAAGGAGAAG...GCCTGAGGAGTCCTCACCATGCCTCTTGCGGCTTTCACCTCCCCACCTGAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp GGCTGGCCTCAAACTCAGAAATCAGCCTGCCTCTGCCTCCCAAGGGCTGGGATTGCCACAGGAGTCTCCTaGGAATCTTCCTGGACCACT +
Preference number: 4 (lower is better)
Translates to: GWPQTQKSACLCLPRAGIATGVS*ESSWTT
Trigger: AGTGGTCCAGGAAGATTCGCAGGAGACTCCTGTGGC...AATCCCAGCCCTTGGGAGGCAGAGGCAGGCTGATTTCTGAGTTTGAGGCCAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp CAGAGAGCCCTGTACCAACACCATCTAGGAAACCAAGGCAGGCCTGTGAATCCCCCAGCAGAAACCCCATaGTCTGCAGGCTGGGGACAC +
Preference number: 4 (lower is better)
Translates to: QRALYQHHLGNQGRPVNPPAETP*SAGWGH
Trigger: GTGTCCCCAGCCTGCAGAGCATGGGGTTTCTGCTGG...GGGATTCACAGGCCTGCCTTGGTTTCCTAGATGGTGTTGGTACAGGGCTCTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp TGTGTGTGCCTGGTGCCTACAGGGCCAGAAGAGAACATCAGATCCCTGGAGACTTGTCTCTGCAGCTCCTaGCTTAGGGCCTTGGCCTCC +
Preference number: 4 (lower is better)
Translates to: CVCLVPTGPEENIRSLETCLCSS*LRALAS
Trigger: GGAGGCCAAGGCCCTAAGGCAGGAGCTGCAGAGACA...AGTCTCCAGGGATCTGATGTTCTCTTCTGGCCCTGTAGGCACCAGGCACACACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp GCCCTGTACCAACACCATCTAGGAAACCAAGGCAGGCCTGTGAATCCCCATCTCACAGACCCCAGCAGCTaGCACTGTCTCTGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: ALYQHHLGNQGRPVNPHLTDPSS*HCLCSS
Trigger: GGAGCTGCAGAGACAGTGGCAGCTGCTGGGGTCTGT...GAGATGGGGATTCACAGGCCTGCCTTGGTTTCCTAGATGGTGTTGGTACAGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp GGTGAAAGCCGCAAGAGGCATGGTGAGGACTCCTCAGGCTTAGGGATAGCTGTCGCCTGTCTGTTTCAGTaGCACCTCCTCCAGGCTGTC +
Preference number: 4 (lower is better)
Translates to: GESRKRHGEDSSGLGIAVACLFQ*HLLQAV
Trigger: GACAGCCTGGAGGAGGTGGCACTGAAACAGACAGGC...GACAGCTATCCCTAAGCCTGAGGAGTCCTCACCATGCCTCTTGCGGCTTTCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp GGTGAAAGCCGCAAGAGGCATGGTGAGGACTCCTCAGGCTTAGGGATAGCTGTCTCTGATTCTAGGGCCTaGTGGGAGGTCTTGCCCTGC +
Preference number: 4 (lower is better)
Translates to: GESRKRHGEDSSGLGIAVSDSRA*WEVLPC
Trigger: GCAGGGCAAGACCTCCCACCAGGCCCTAGAATCAGA...GACAGCTATCCCTAAGCCTGAGGAGTCCTCACCATGCCTCTTGCGGCTTTCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR TCA 90 bp GGCTGGCCTCAAACTCAGAAATCAGCCTGCCTCTGCCTCCCAAGGGCTGGGATTGAAGCCGGTCATGCCTaGAGATGCCATCTTCTCCAA +
Preference number: 4 (lower is better)
Translates to: GWPQTQKSACLCLPRAGIEAGHA*RCHLLQ
Trigger: TTGGAGAAGATGGCATCTTCAGGCATGACCGGCTTC...AATCCCAGCCCTTGGGAGGCAGAGGCAGGCTGATTTCTGAGTTTGAGGCCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp GGTGAAAGCCGCAAGAGGCATGGTGAGGACTCCTCAGGCTTAGGGATAGCTGTCAGAAACCCCATGCTCTaGAGGCTGGGGACACTGTCT +
Preference number: 4 (lower is better)
Translates to: GESRKRHGEDSSGLGIAVRNPML*RLGTLS
Trigger: AGACAGTGTCCCCAGCCTGCAGAGCATGGGGTTTCT...GACAGCTATCCCTAAGCCTGAGGAGTCCTCACCATGCCTCTTGCGGCTTTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp GAATGTCTGCTTCCTTGCTTCACTGACTCCATTCCCTTCAGCTCTCTTTCTGAGACGGGTACCACGGGCTaGGATGAGCTGGGCTCCCGG +
Preference number: 4 (lower is better)
Translates to: ECLLPCFTDSIPFSSLSETGTTG*DELGSR
Trigger: CCGGGAGCCCAGCTCATCCCAGCCCGTGGTACCCGT...CTCAGAAAGAGAGCTGAAGGGAATGGAGTCAGTGAAGCAAGGAAGCAGACATTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp TGGGAATCAAACCTGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGTATCCTGGTTCTCCTTaGCCAGCTTGTCCAGCAGAA +
Preference number: 4 (lower is better)
Translates to: WESNLGLLEEQPVPSAAEYPGSP*PACPAE
Trigger: TTCTGCTGGACAAGCTGGCCAAGGAGAACCAGGATA...CTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGTTTGATTCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp GGTGAAAGCCGCAAGAGGCATGGTGAGGACTCCTCAGGCTTAGGGATAGCTGTCAGTCGGGCCCTTAGCTaGTGCAGTTCTGATTCTAGG +
Preference number: 4 (lower is better)
Translates to: GESRKRHGEDSSGLGIAVSRALS*CSSDSR
Trigger: CCTAGAATCAGAACTGCAGCAGCTAAGGGCCCGACT...GACAGCTATCCCTAAGCCTGAGGAGTCCTCACCATGCCTCTTGCGGCTTTCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp TGTGTGTGCCTGGTGCCTACAGGGCCAGAAGAGAACATCAGATCCCTGGAGACTTGTCGTCGTCACTGCTaGAGCAGCGATGCTCTTTCC +
Preference number: 4 (lower is better)
Translates to: CVCLVPTGPEENIRSLETCRRHC*SSDALS
Trigger: GGAAAGAGCATCGCTGCTCCAGCAGTGACGACGACA...AGTCTCCAGGGATCTGATGTTCTCTTCTGGCCCTGTAGGCACCAGGCACACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp AGAGTCCCTGGGAGAGTTCCAGAGCTAGAAGCCCAGTGTGCTACCAATGGCGTAGCCTCCGCCTCAAGCTaGTTATGCTGCTCCAATAAG +
Preference number: 4 (lower is better)
Translates to: RVPGRVPELEAQCATNGVASASS*LCCSNK
Trigger: CTTATTGGAGCAGCATAAGCAGCTTGAGGCGGAGGC...TACGCCATTGGTAGCACACTGGGCTTCTAGCTCTGGAACTCTCCCAGGGACTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp CAGAGAGCCCTGTACCAACACCATCTAGGAAACCAAGGCAGGCCTGTGAATCCCAAGCGAAGCCGGTCATaGCTGAAGATGCCATCTTCT +
Preference number: 4 (lower is better)
Translates to: QRALYQHHLGNQGRPVNPKRSRS*LKMPSS
Trigger: AGAAGATGGCATCTTCAGGCATGACCGGCTTCGCTT...GGGATTCACAGGCCTGCCTTGGTTTCCTAGATGGTGTTGGTACAGGGCTCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp CCCCCTAGAGTCCCTGGGAGAGTTCCAGAGCTAGAAGCCCAGTGTGCTACCAATAAACTGCTCTGGGACTaGAGGGTAAGTTCTGTGGAT +
Preference number: 4 (lower is better)
Translates to: PPRVPGRVPELEAQCATNKLLWD*RVSSVD
Trigger: ATCCACAGAACTTACCCTCCAGTCCCAGAGCAGTTT...ATTGGTAGCACACTGGGCTTCTAGCTCTGGAACTCTCCCAGGGACTCTAGGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp GAATGTCTGCTTCCTTGCTTCACTGACTCCATTCCCTTCAGCTCTCTTTCTGAGGCTGCTCCAATAAGCTaGGGTCTGGCTCCTGCCCCT +
Preference number: 4 (lower is better)
Translates to: ECLLPCFTDSIPFSSLSEAAPIS*GLAPAP
Trigger: AGGGGCAGGAGCCAGACCCCAGCTTATTGGAGCAGC...CTCAGAAAGAGAGCTGAAGGGAATGGAGTCAGTGAAGCAAGGAAGCAGACATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR CAA 72 bp GGCCAGAAGAGAACATCAGATCCCTGGAGACTGAAGTaGCAGACATTTGTGAGCTACCATGTGGGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: GQKRTSDPWRLK*QTFVSYHVGAG
Trigger: CCCAGCACCCACATGGTAGCTCACAAATGTCTGCAACTTCAGTCTCCAGGGATCTGATGTTCTCTTCTGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp AGAGTCCCTGGGAGAGTTCCAGAGCTAGAAGCCCAGTGTGCTACCAATGGCGTATCCCAGCTAATTCTTTaGCATCTGCCTTGGAGGAGT +
Preference number: 4 (lower is better)
Translates to: RVPGRVPELEAQCATNGVSQLIL*HLPWRS
Trigger: ACTCCTCCAAGGCAGATGGCAAAGAATTAGCTGGGA...TACGCCATTGGTAGCACACTGGGCTTCTAGCTCTGGAACTCTCCCAGGGACTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR GCA 90 bp TCTGAGGGACACTGGTCCAGAGAGACAGGGAATATAATTGTCTTTCTAAACCAGTCCCGCAAGCCCCTCTaGAGGTCCCAGTGCACAGAC +
Preference number: 4 (lower is better)
Translates to: SEGHWSRETGNIIVFLNQSRKPL*RSQCTD
Trigger: GTCTGTGCACTGGGACCTGCAGAGGGGCTTGCGGGA...CTGGTTTAGAAAGACAATTATATTCCCTGTCTCTCTGGACCAGTGTCCCTCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp CCCCCTAGAGTCCCTGGGAGAGTTCCAGAGCTAGAAGCCCAGTGTGCTACCAATACAGCAGTTTCTCTCTaGGAACTTTCCGTCTGGAAA +
Preference number: 4 (lower is better)
Translates to: PPRVPGRVPELEAQCATNTAVSL*ELSVWK
Trigger: TTTCCAGACGGAAAGTTCCCAGAGAGAAACTGCTGT...ATTGGTAGCACACTGGGCTTCTAGCTCTGGAACTCTCCCAGGGACTCTAGGGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp TCTGAGGGACACTGGTCCAGAGAGACAGGGAATATAATTGTCTTTCTAAACCAGGGCTCCCTCAGATTCTaGGTCCATCCTGGGTTCTGG +
Preference number: 4 (lower is better)
Translates to: SEGHWSRETGNIIVFLNQGSLRF*VHPGFW
Trigger: CCAGAACCCAGGATGGACCCAGAATCTGAGGGAGCC...CTGGTTTAGAAAGACAATTATATTCCCTGTCTCTCTGGACCAGTGTCCCTCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR CAA 72 bp TTTAGCAAAAGTGGTACCAGTGCAGGGCCAAGTGCGTaGCTCTCTTCTGTGAAGGTCATTCAAGGGCACCAA +
Preference number: 4 (lower is better)
Translates to: FSKSGTSAGPSA*LSSVKVIQGHQ
Trigger: TTGGTGCCCTTGAATGACCTTCACAGAAGAGAGCAACGCACTTGGCCCTGCACTGGTACCACTTTTGCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR TCA 90 bp TACATGTCACTTAGTACCCAGGGCCTTTATCTTTGCATATGTCTGCTTAGACAGCATCCACAAAATCTCTaGAGCGAAGCCGGTCATGCC +
Preference number: 4 (lower is better)
Translates to: YMSLSTQGLYLCICLLRQHPQNL*SEAGHA
Trigger: GGCATGACCGGCTTCGCTTCAGAGATTTTGTGGATG...CTGTCTAAGCAGACATATGCAAAGATAAAGGCCCTGGGTACTAAGTGACATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR CAA 72 bp ATCCCTCCAGCACCACACAGCAGACTGTTTAAACATTaGTGGAATGAGCCACCCTTTCTACCTGTCTTGTCT +
Preference number: 4 (lower is better)
Translates to: IPPAPHSRLFKH*WNEPPFLPVLS
Trigger: AGACAAGACAGGTAGAAAGGGTGGCTCATTCCACAAATGTTTAAACAGTCTGCTGTGTGGTGCTGGAGGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR CAA 72 bp TCTGAGACTCCAAAATTTATTATCCAACATGAGCTCTaGACATGGAAACCAGAGGCCAGAGAGCCCTGTACC +
Preference number: 4 (lower is better)
Translates to: SETPKFIIQHEL*TWKPEAREPCT
Trigger: GGTACAGGGCTCTCTGGCCTCTGGTTTCCATGTCAAGAGCTCATGTTGGATAATAAATTTTGGAGTCTCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp TCTGAGGGACACTGGTCCAGAGAGACAGGGAATATAATTGTCTTTCTAAACCAGTGGGAACTTTCCGTCTaGAAAAGCTTCTCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: SEGHWSRETGNIIVFLNQWELSV*KSFSSP
Trigger: TGGAGAAGAGAAGCTTTTCCAGACGGAAAGTTCCCA...CTGGTTTAGAAAGACAATTATATTCCCTGTCTCTCTGGACCAGTGTCCCTCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CCA 90 bp TCTGAGGGACACTGGTCCAGAGAGACAGGGAATATAATTGTCTTTCTAAACCAGTGCCTTTCTACAGAATaGGAGTTCCCATCTTTCCTA +
Preference number: 4 (lower is better)
Translates to: SEGHWSRETGNIIVFLNQCLSTE*EFPSFL
Trigger: TAGGAAAGATGGGAACTCCCATTCTGTAGAAAGGCA...CTGGTTTAGAAAGACAATTATATTCCCTGTCTCTCTGGACCAGTGTCCCTCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
3UTR CAA 72 bp AAACATTTGTGGAATGAGCCACCCTTTCTACCTGTCTaGTCTAGCACGGAAATTAAACAAGCCACTGCACTT +
Preference number: 4 (lower is better)
Translates to: KHLWNEPPFLPV*SSTEIKQATAL
Trigger: AAGTGCAGTGGCTTGTTTAATTTCCGTGCTAGACAAGACAGGTAGAAAGGGTGGCTCATTCCACAAATGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS TCA 90 bp ACCAAAGAGGGCCAGGCCCTCCTGCCGGGCACAGTCGGCCACACCTaGACAGCCCTGAGGGGGTCGGTACTTGCGCCTCAGCAGCTCCTC +
Preference number: 5 (lower is better)
Translates to: TKEGQALLPGTVGHT*TALRGSVLAPQQLL
Trigger: GAGGAGCTGCTGAGGCGCAAGTACCGACCCCCTCAGGGCTGTTCAGGTGTGGCCGACTGTGCCCGGCAGGAGGGCCTGGCCCTCTTTGGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS TCA 90 bp CCGCGCCACTTCTCCTTCCCACCCCACTCCCTGGGACTCTGGGTGTaGGGCTTCTTCTGGTGCCAGGCCTCCGAGTCATTGGGGGACCTG +
Preference number: 5 (lower is better)
Translates to: PRHFSFPPHSLGLWV*GFFWCQASESLGDL
Trigger: CAGGTCCCCCAATGACTCGGAGGCCTGGCACCAGAAGAAGCCTCACACCCAGAGTCCCAGGGAGTGGGGTGGGAAGGAGAAGTGGCGCGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 90 bp CTCCAGCGCCCAGTGTGCTCCCGGCCCTCATCCCTCCAGCTCCTTTaGCTCTCCTGGCCAGACTCCTCCTTCCTCGGCTTCCAGTGCTCA +
Preference number: 5 (lower is better)
Translates to: LQRPVCSRPSSLQLL*LSWPDSSFLGFQCS
Trigger: TGAGCACTGGAAGCCGAGGAAGGAGGAGTCTGGCCAGGAGAGGCAAAGGAGCTGGAGGGATGAGGGCCGGGAGCACACTGGGCGCTGGAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 90 bp GGCAGCCGAGACAAGTATTCTCTCAGCACAGAGGCCAGCTCCTGCTaGCGCACAGGGGCCAGCTCCACACCAAAGAGGGCCAGGCCCTCC +
Preference number: 5 (lower is better)
Translates to: GSRDKYSLSTEASSC*RTGASSTPKRARPS
Trigger: GGAGGGCCTGGCCCTCTTTGGTGTGGAGCTGGCCCCTGTGCGGCAGCAGGAGCTGGCCTCTGTGCTGAGAGAATACTTGTCTCGGCTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 90 bp CAGGGCAGCCGAGACAAGTATTCTCTCAGCACAGAGGCCAGCTCCTaGTGCCGCACAGGGGCCAGCTCCACACCAAAGAGGGCCAGGCCC +
Preference number: 5 (lower is better)
Translates to: QGSRDKYSLSTEASS*CRTGASSTPKRARP
Trigger: GGGCCTGGCCCTCTTTGGTGTGGAGCTGGCCCCTGTGCGGCAGCAGGAGCTGGCCTCTGTGCTGAGAGAATACTTGTCTCGGCTGCCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 90 bp TGGCCTGGTCCTCCACATCTACGGGTACCACGGGCTGGGATGAGCTaGGCTCCCGGCCCCTCCGTCTCCGCAGACCCTCCACATCTACAT +
Preference number: 5 (lower is better)
Translates to: WPGPPHLRVPRAGMS*APGPSVSADPPHLH
Trigger: ATGTAGATGTGGAGGGTCTGCGGAGACGGAGGGGCCGGGAGCCCAGCTCATCCCAGCCCGTGGTACCCGTAGATGTGGAGGACCAGGCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
CDS GCA 90 bp AGCTGCTGCAGTTCTGATTCTAGGGCCTGGTGGGAGGTCTTGCCCTaGTGCAGGGCTTCCCGGAGCCGGGCATTCTCCTCCTCCAGCCCT +
Preference number: 5 (lower is better)
Translates to: SCCSSDSRAWWEVLP*CRASRSRAFSSSSP
Trigger: AGGGCTGGAGGAGGAGAATGCCCGGCTCCGGGAAGCCCTGCAGCAGGGCAAGACCTCCCACCAGGCCCTAGAATCAGAACTGCAGCAGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 90 bp TGGAGTCGGGCCCTTAGCTGCTGCAGTTCTGATTCTAGGGCCTGGTaGGAGGTCTTGCCCTGCTGCAGGGCTTCCCGGAGCCGGGCATTC +
Preference number: 5 (lower is better)
Translates to: WSRALSCCSSDSRAW*EVLPCCRASRSRAF
Trigger: GAATGCCCGGCTCCGGGAAGCCCTGCAGCAGGGCAAGACCTCCCACCAGGCCCTAGAATCAGAACTGCAGCAGCTAAGGGCCCGACTCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 90 bp TGCTGCAGTTCTGATTCTAGGGCCTGGTGGGAGGTCTTGCCCTGCTaGAGGGCTTCCCGGAGCCGGGCATTCTCCTCCTCCAGCCCTTTG +
Preference number: 5 (lower is better)
Translates to: CCSSDSRAWWEVLPC*RASRSRAFSSSSPL
Trigger: CAAAGGGCTGGAGGAGGAGAATGCCCGGCTCCGGGAAGCCCTGCAGCAGGGCAAGACCTCCCACCAGGCCCTAGAATCAGAACTGCAGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 90 bp CCCTTAGCTGCTGCAGTTCTGATTCTAGGGCCTGGTGGGAGGTCTTaGCCTGCTGCAGGGCTTCCCGGAGCCGGGCATTCTCCTCCTCCA +
Preference number: 5 (lower is better)
Translates to: PLAAAVLILGPGGRS*PAAGLPGAGHSPPP
Trigger: TGGAGGAGGAGAATGCCCGGCTCCGGGAAGCCCTGCAGCAGGGCAAGACCTCCCACCAGGCCCTAGAATCAGAACTGCAGCAGCTAAGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 90 bp CTCTGCAGGTCCCAGTGCACAGACCCCAGCAGCTGCCACTGTCTCTaGAGCTCCTGCCTTAGGGCCTTGGCCTCCGCCTCAAGCTGCTTA +
Preference number: 5 (lower is better)
Translates to: LCRSQCTDPSSCHCL*SSCLRALASASSCL
Trigger: TAAGCAGCTTGAGGCGGAGGCCAAGGCCCTAAGGCAGGAGCTGCAGAGACAGTGGCAGCTGCTGGGGTCTGTGCACTGGGACCTGCAGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 90 bp TTGAGGGAGATGCCCAGCTCTCCACCTATACCCTCGCCCTTGGCCTaGTCCTCCACATCTACGGGTACCACGGGCTGGGATGAGCTGGGC +
Preference number: 5 (lower is better)
Translates to: LREMPSSPPIPSPLA*SSTSTGTTGWDELG
Trigger: GCCCAGCTCATCCCAGCCCGTGGTACCCGTAGATGTGGAGGACCAGGCCAAGGGCGAGGGTATAGGTGGAGAGCTGGGCATCTCCCTCAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
CDS-3UTR CAA 90 bp ACCTGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGCCATCCCTCCTTCCTAGGGTGTACCTaGGGGTCCTGTCGCTTGCTG +
Preference number: 5 (lower is better)
Translates to: TWGFWKSSLCPQRLSHPSFLGCT*GSCRLL
Trigger: CAGCAAGCGACAGGACCCCAAGGTACACCCTAGGAA...GGAGGGATGGCTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 90 bp CCCCGGACACAGTTAGCCTCTAGCCCTTGGAGTCGGGCCCTTAGCTaGTGCAGTTCTGATTCTAGGGCCTGGTGGGAGGTCTTGCCCTGC +
Preference number: 5 (lower is better)
Translates to: PRTQLASSPWSRALS*CSSDSRAWWEVLPC
Trigger: GCAGGGCAAGACCTCCCACCAGGCCCTAGAATCAGAACTGCAGCAGCTAAGGGCCCGACTCCAAGGGCTAGAGGCTAACTGTGTCCGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS TCA 90 bp AAGCCGGTCATGCCTGAAGATGCCATCTTCTCCAAAGTAAGCAGGTaGGAGGGGCAGCTGTTTGGTCAGCTGCCCGGCCCAGGGCAGCCG +
Preference number: 5 (lower is better)
Translates to: KPVMPEDAIFSKVSR*EGQLFGQLPGPGQP
Trigger: CGGCTGCCCTGGGCCGGGCAGCTGACCAAACAGCTGCCCCTCTCACCTGCTTACTTTGGAGAAGATGGCATCTTCAGGCATGACCGGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 90 bp CCTGTTCCCCAGAGTCTCTACCAGTTCAGTCTCCGGCCCGGTTTCTaGAAAGACCTGCAACTCGGCTTCCTCCATGGGCCCAGTCTCGGG +
Preference number: 5 (lower is better)
Translates to: PVPQSLYQFSLRPGF*KDLQLGFLHGPSLG
Trigger: CCCGAGACTGGGCCCATGGAGGAAGCCGAGTTGCAGGTCTTTCCAGAAACCGGGCCGGAGACTGAACTGGTAGAGACTCTGGGGAACAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 90 bp AGAGTCTCTACCAGTTCAGTCTCCGGCCCGGTTTCTGGAAAGACCTaGAACTCGGCTTCCTCCATGGGCCCAGTCTCGGGCTCCAGCAGT +
Preference number: 5 (lower is better)
Translates to: RVSTSSVSGPVSGKT*NSASSMGPVSGSSS
Trigger: ACTGCTGGAGCCCGAGACTGGGCCCATGGAGGAAGCCGAGTTGCAGGTCTTTCCAGAAACCGGGCCGGAGACTGAACTGGTAGAGACTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
CDS GCA 90 bp TCCTGGTTCTCCTTGGCCAGCTTGTCCAGCAGAAACCCCATGCTCTaGAGGCTGGGGACACTGTCTGGTGGGACACTTGAAGCCTGCAGG +
Preference number: 5 (lower is better)
Translates to: SWFSLASLSSRNPML*RLGTLSGGTLEACR
Trigger: CCTGCAGGCTTCAAGTGTCCCACCAGACAGTGTCCCCAGCCTGCAGAGCATGGGGTTTCTGCTGGACAAGCTGGCCAAGGAGAACCAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CAA 90 bp GGCTGGCCTCAAACTCAGAAATCAGCCTGCCTCTGCCTCCCAAGGGCTGGGATTTCTTTGCCATCTGCCTaGGAGGAGTCCCGAAGGGCC +
Preference number: 5 (lower is better)
Translates to: GWPQTQKSACLCLPRAGISLPSA*EESRRA
Trigger: GGCCCTTCGGGACTCCTCCAAGGCAGATGGCAAAGA...AATCCCAGCCCTTGGGAGGCAGAGGCAGGCTGATTTCTGAGTTTGAGGCCAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CAA 90 bp GGCTGGCCTCAAACTCAGAAATCAGCCTGCCTCTGCCTCCCAAGGGCTGGGATTCCTATACCCTCGCCCTaGGCCTGGTCCTCCACATCT +
Preference number: 5 (lower is better)
Translates to: GWPQTQKSACLCLPRAGIPIPSP*AWSSTS
Trigger: AGATGTGGAGGACCAGGCCAAGGGCGAGGGTATAGG...AATCCCAGCCCTTGGGAGGCAGAGGCAGGCTGATTTCTGAGTTTGAGGCCAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 90 bp AGACACACCCCATCTACACCCCGGACACAGTTAGCCTCTAGCCCTTaGAGTCGGGCCCTTAGCTGCTGCAGTTCTGATTCTAGGGCCTGG +
Preference number: 5 (lower is better)
Translates to: RHTPSTPRTQLASSP*SRALSCCSSDSRAW
Trigger: CCAGGCCCTAGAATCAGAACTGCAGCAGCTAAGGGCCCGACTCCAAGGGCTAGAGGCTAACTGTGTCCGGGGTGTAGATGGGGTGTGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 90 bp AGTGGTGCGGATGGCGGCTGTGCTCTTCCCTGGGCCCCACAACTCTaGGGTTCCAGGAGTGCTTCTCCTTCTTTCGTGACCTCTTCTTCA +
Preference number: 5 (lower is better)
Translates to: SGADGGCALPWAPQL*GSRSASPSFVTSSS
Trigger: TGAAGAAGAGGTCACGAAAGAAGGAGAAGCACTCCTGGAACCCCAGAGTTGTGGGGCCCAGGGAAGAGCACAGCCGCCATCCGCACCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CAA 90 bp TGGGAATCAAACCTGGGGCTTCTGGAAGAGCAGCCTGTGCCCTCAGCGGCTGAGTTCTCCTTGGCCAGCTaGTCCAGCAGAAACCCCATG +
Preference number: 5 (lower is better)
Translates to: WESNLGLLEEQPVPSAAEFSLAS*SSRNPM
Trigger: CATGGGGTTTCTGCTGGACAAGCTGGCCAAGGAGAA...CTCAGCCGCTGAGGGCACAGGCTGCTCTTCCAGAAGCCCCAGGTTTGATTCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CAA 90 bp TGTGTGTGCCTGGTGCCTACAGGGCCAGAAGAGAACATCAGATCCCTGGAGACTTCCTCCTCCAGCCCTTaGGGCTGGTGCAACAGGCTC +
Preference number: 5 (lower is better)
Translates to: CVCLVPTGPEENIRSLETSSSSP*GWCNRL
Trigger: GAGCCTGTTGCACCAGCCCAAAGGGCTGGAGGAGGA...AGTCTCCAGGGATCTGATGTTCTCTTCTGGCCCTGTAGGCACCAGGCACACACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CAA 90 bp CAGAGAGCCCTGTACCAACACCATCTAGGAAACCAAGGCAGGCCTGTGAATCCCCAGGCCTCCGAGTCATaGGGGGACCTGCCAGTGTTG +
Preference number: 5 (lower is better)
Translates to: QRALYQHHLGNQGRPVNPQASES*GDLPVL
Trigger: CAACACTGGCAGGTCCCCCAATGACTCGGAGGCCTG...GGGATTCACAGGCCTGCCTTGGTTTCCTAGATGGTGTTGGTACAGGGCTCTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS TCA 90 bp TCTTCTGGTGCCAGGCCTCCGAGTCATTGGGGGACCTGCCAGTGTTaGTACCCTGATTCTCGAGGTCCTGCAGTGTCTGGGCCAACATGT +
Preference number: 5 (lower is better)
Translates to: SSGARPPSHWGTCQC*YPDSRGPAVSGPTC
Trigger: ACATGTTGGCCCAGACACTGCAGGACCTCGAGAATCAGGGTATCAACACTGGCAGGTCCCCCAATGACTCGGAGGCCTGGCACCAGAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 90 bp TCCGTCTCCGCAGACCCTCCACATCTACATCAGTGTCGTCGTCACTaGTGGAGCAGCGATGCTCTTTCCAAACTGCTCTGGGACTGGAGG +
Preference number: 5 (lower is better)
Translates to: SVSADPPHLHQCRRH*WSSDALSKLLWDWR
Trigger: CCTCCAGTCCCAGAGCAGTTTGGAAAGAGCATCGCTGCTCCAGCAGTGACGACGACACTGATGTAGATGTGGAGGGTCTGCGGAGACGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
CDS-3UTR CAA 90 bp GCCCTGTACCAACACCATCTAGGAAACCAAGGCAGGCCTGTGAATCCCCATCTCATCCCTCCAGCTCCTTaGCCTCTCCTGGCCAGACTC +
Preference number: 5 (lower is better)
Translates to: ALYQHHLGNQGRPVNPHLIPPAP*PLLARL
Trigger: GAGTCTGGCCAGGAGAGGCAAAGGAGCTGGAGGGAT...GAGATGGGGATTCACAGGCCTGCCTTGGTTTCCTAGATGGTGTTGGTACAGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CAA 90 bp TACCTGCCTCCGGCCTTGAGCTTTCACCCAGCCACCAAGGTCACCACATCTGTACTCTTCTTCAGGGCCTaGTCCCCAAAGAAGTGGCCG +
Preference number: 5 (lower is better)
Translates to: YLPPALSFHPATKVTTSVLFFRA*SPKKWP
Trigger: CGGCCACTTCTTTGGGGACAAGGCCCTGAAGAAGAG...TACAGATGTGGTGACCTTGGTGGCTGGGTGAAAGCTCAAGGCCGGAGGCAGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 90 bp TGCAGGCTGGGGACACTGTCTGGTGGGACACTTGAAGCCTGCAGGTaGTCTATCTCATCCTGCCTGTTCCCCAGAGTCTCTACCAGTTCA +
Preference number: 5 (lower is better)
Translates to: CRLGTLSGGTLEACR*SISSCLFPRVSTSS
Trigger: TGAACTGGTAGAGACTCTGGGGAACAGGCAGGATGAGATAGAGCACCTGCAGGCTTCAAGTGTCCCACCAGACAGTGTCCCCAGCCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 90 bp TGCTTATGCTGCTCCAATAAGCTGGGGTCTGGCTCCTGCCCCTTGTaGCCTTGTTCTTTAGTGGCCTTGCCATCCTGTGGATCTCCACCC +
Preference number: 5 (lower is better)
Translates to: CLCCSNKLGSGSCPL*PCSLVALPSCGSPP
Trigger: GGGTGGAGATCCACAGGATGGCAAGGCCACTAAAGAACAAGGCCACAAGGGGCAGGAGCCAGACCCCAGCTTATTGGAGCAGCATAAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 90 bp AGATGCCATCTTCTCCAAAGTAAGCAGGTGAGAGGGGCAGCTGTTTaGTCAGCTGCCCGGCCCAGGGCAGCCGAGACAAGTATTCTCTCA +
Preference number: 5 (lower is better)
Translates to: RCHLLQSKQVRGAAV*SAARPRAAETSILS
Trigger: TGAGAGAATACTTGTCTCGGCTGCCCTGGGCCGGGCAGCTGACCAAACAGCTGCCCCTCTCACCTGCTTACTTTGGAGAAGATGGCATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CAA 90 bp GGTGAAAGCCGCAAGAGGCATGGTGAGGACTCCTCAGGCTTAGGGATAGCTGTCTGTCTGGTGGGACACTaGAAGCCTGCAGGTGCTCTA +
Preference number: 5 (lower is better)
Translates to: GESRKRHGEDSSGLGIAVCLVGH*KPAGAL
Trigger: TAGAGCACCTGCAGGCTTCAAGTGTCCCACCAGACA...GACAGCTATCCCTAAGCCTGAGGAGTCCTCACCATGCCTCTTGCGGCTTTCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CAA 90 bp GAATGTCTGCTTCCTTGCTTCACTGACTCCATTCCCTTCAGCTCTCTTTCTGAGGCCTGGTGGGAGGTCTaGCCCTGCTGCAGGGCTTCC +
Preference number: 5 (lower is better)
Translates to: ECLLPCFTDSIPFSSLSEAWWEV*PCCRAS
Trigger: GGAAGCCCTGCAGCAGGGCAAGACCTCCCACCAGGC...CTCAGAAAGAGAGCTGAAGGGAATGGAGTCAGTGAAGCAAGGAAGCAGACATTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 90 bp CGTCACTGCTGGAGCAGCGATGCTCTTTCCAAACTGCTCTGGGACTaGAGGGTAAGTTCTGTGGATGGATCTCACTCTCCAGGTCCTGTG +
Preference number: 5 (lower is better)
Translates to: RHCWSSDALSKLLWD*RVSSVDGSHSPGPV
Trigger: CACAGGACCTGGAGAGTGAGATCCATCCACAGAACTTACCCTCCAGTCCCAGAGCAGTTTGGAAAGAGCATCGCTGCTCCAGCAGTGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
ENSMUST00000145753.2
CDS-3UTR CAA 90 bp GCCCTGTACCAACACCATCTAGGAAACCAAGGCAGGCCTGTGAATCCCCATCTCCCCAGGAAACACATGTaGAGGGAGATGCCCAGCTCT +
Preference number: 5 (lower is better)
Translates to: ALYQHHLGNQGRPVNPHLPRKHM*REMPSS
Trigger: AGAGCTGGGCATCTCCCTCAACATGTGTTTCCTGGG...GAGATGGGGATTCACAGGCCTGCCTTGGTTTCCTAGATGGTGTTGGTACAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CAA 90 bp CCCCCTAGAGTCCCTGGGAGAGTTCCAGAGCTAGAAGCCCAGTGTGCTACCAATATATCCTGGTTCTCCTaGGCCAGCTTGTCCAGCAGA +
Preference number: 5 (lower is better)
Translates to: PPRVPGRVPELEAQCATNISWFS*ASLSSR
Trigger: TCTGCTGGACAAGCTGGCCAAGGAGAACCAGGATAT...ATTGGTAGCACACTGGGCTTCTAGCTCTGGAACTCTCCCAGGGACTCTAGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CAA 90 bp AGAGTCCCTGGGAGAGTTCCAGAGCTAGAAGCCCAGTGTGCTACCAATGGCGTAGGATCTCCACCCCAGTaGAGACACACCCCATCTACA +
Preference number: 5 (lower is better)
Translates to: RVPGRVPELEAQCATNGVGSPPQ*RHTPST
Trigger: TGTAGATGGGGTGTGTCTCAACTGGGGTGGAGATCC...TACGCCATTGGTAGCACACTGGGCTTCTAGCTCTGGAACTCTCCCAGGGACTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS-3UTR CAA 90 bp CAGAGAGCCCTGTACCAACACCATCTAGGAAACCAAGGCAGGCCTGTGAATCCCTCTGGCTCCTGCCCCTaGTGGCCTTGTTCTTTAGTG +
Preference number: 5 (lower is better)
Translates to: QRALYQHHLGNQGRPVNPSGSCP*WPCSLV
Trigger: CACTAAAGAACAAGGCCACAAGGGGCAGGAGCCAGA...GGGATTCACAGGCCTGCCTTGGTTTCCTAGATGGTGTTGGTACAGGGCTCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 90 bp TCCCAGGAGGACAGGGCGTCAGGGCTGTTGTCTTTCCCCCAAGAATaGTTCTGCCTTTCTACAGAATGGGAGTTCCCATCTTTCCTAGGG +
Preference number: 5 (lower is better)
Translates to: SQEDRASGLLSFPQE*FCLSTEWEFPSFLG
Trigger: CCCTAGGAAAGATGGGAACTCCCATTCTGTAGAAAGGCAGAAGCATTCTTGGGGGAAAGACAACAGCCCTGACGCCCTGTCCTCCTGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 90 bp TGTCGTCGTCACTGCTGGAGCAGCGATGCTCTTTCCAAACTGCTCTaGGACTGGAGGGTAAGTTCTGTGGATGGATCTCACTCTCCAGGT +
Preference number: 5 (lower is better)
Translates to: CRRHCWSSDALSKLL*DWRVSSVDGSHSPG
Trigger: ACCTGGAGAGTGAGATCCATCCACAGAACTTACCCTCCAGTCCCAGAGCAGTTTGGAAAGAGCATCGCTGCTCCAGCAGTGACGACGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
ENSMUST00000145753.2
CDS-3UTR CAA 90 bp TCTGAGGGACACTGGTCCAGAGAGACAGGGAATATAATTGTCTTTCTAAACCAGGAGAGGGGCAGCTGTTaGGTCAGCTGCCCGGCCCAG +
Preference number: 5 (lower is better)
Translates to: SEGHWSRETGNIIVFLNQERGSC*VSCPAQ
Trigger: CTGGGCCGGGCAGCTGACCAAACAGCTGCCCCTCTC...CTGGTTTAGAAAGACAATTATATTCCCTGTCTCTCTGGACCAGTGTCCCTCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 90 bp GGGCTGTTGTCTTTCCCCCAAGAATGCTTCTGCCTTTCTACAGAATaGGAGTTCCCATCTTTCCTAGGGTGTACCTTGGGGTCCTGTCGC +
Preference number: 5 (lower is better)
Translates to: GLLSFPQECFCLSTE*EFPSFLGCTLGSCR
Trigger: GCGACAGGACCCCAAGGTACACCCTAGGAAAGATGGGAACTCCCATTCTGTAGAAAGGCAGAAGCATTCTTGGGGGAAAGACAACAGCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 90 bp GTCCTCAAAGTCATCCACTTCATCATCGTCGCCTGTCTGTTTCAGTaGCACCTCCTCCAGGCTGTCCTCCAAGGCATCCACAAAATCTCT +
Preference number: 5 (lower is better)
Translates to: VLKVIHFIIVACLFQ*HLLQAVLQGIHKIS
Trigger: AGAGATTTTGTGGATGCCTTGGAGGACAGCCTGGAGGAGGTGGCACTGAAACAGACAGGCGACGATGATGAAGTGGATGACTTTGAGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 90 bp TCCTTCTTTCGTGACCTCTTCTTCAGGGCCTTGTCCCCAAAGAAGTaGCCGAAGACAAAGTCCTCAAAGTCATCCACTTCATCATCGTCG +
Preference number: 5 (lower is better)
Translates to: SFFRDLFFRALSPKK*PKTKSSKSSTSSSS
Trigger: CGACGATGATGAAGTGGATGACTTTGAGGACTTTGTCTTCGGCCACTTCTTTGGGGACAAGGCCCTGAAGAAGAGGTCACGAAAGAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS TCA 72 bp GGCCAGGCCCTCCTGCCGGGCACAGTCGGCCACACCTaGACAGCCCTGAGGGGGTCGGTACTTGCGCCTCAG +
Preference number: 6 (lower is better)
Translates to: GQALLPGTVGHT*TALRGSVLAPQ
Trigger: CTGAGGCGCAAGTACCGACCCCCTCAGGGCTGTTCAGGTGTGGCCGACTGTGCCCGGCAGGAGGGCCTGGCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 72 bp CCTCCACATCTACGGGTACCACGGGCTGGGATGAGCTaGGCTCCCGGCCCCTCCGTCTCCGCAGACCCTCCA +
Preference number: 6 (lower is better)
Translates to: PPHLRVPRAGMS*APGPSVSADPP
Trigger: TGGAGGGTCTGCGGAGACGGAGGGGCCGGGAGCCCAGCTCATCCCAGCCCGTGGTACCCGTAGATGTGGAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
CDS CCA 72 bp TTGGCCTGGTCCTCCACATCTACGGGTACCACGGGCTaGGATGAGCTGGGCTCCCGGCCCCTCCGTCTCCGC +
Preference number: 6 (lower is better)
Translates to: LAWSSTSTGTTG*DELGSRPLRLR
Trigger: GCGGAGACGGAGGGGCCGGGAGCCCAGCTCATCCCAGCCCGTGGTACCCGTAGATGTGGAGGACCAGGCCAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
CDS CCA 72 bp CAACATGTGACCGAGTTCAGCCAGGCCAGGGTGAGCTaGGGCTCCCCGGCCAGCATCCCGCAAGCCCCTCTG +
Preference number: 6 (lower is better)
Translates to: QHVTEFSQARVS*GSPASIPQAPL
Trigger: CAGAGGGGCTTGCGGGATGCTGGCCGGGGAGCCCCAGCTCACCCTGGCCTGGCTGAACTCGGTCACATGTTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS TCA 72 bp TCCTGGACCACTGTGTCTCCAGGGGCCTCCGTCCCATaGCCATCGGCTCCCAGAGTGCCCTTGGCCGCAGAC +
Preference number: 6 (lower is better)
Translates to: SWTTVSPGASVP*PSAPRVPLAAD
Trigger: GTCTGCGGCCAAGGGCACTCTGGGAGCCGATGGTCATGGGACGGAGGCCCCTGGAGACACAGTGGTCCAGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
ENSMUST00000145753.2
ENSMUST00000146630.8
CDS GCA 72 bp TCCCAGTGCACAGACCCCAGCAGCTGCCACTGTCTCTaGAGCTCCTGCCTTAGGGCCTTGGCCTCCGCCTCA +
Preference number: 6 (lower is better)
Translates to: SQCTDPSSCHCL*SSCLRALASAS
Trigger: TGAGGCGGAGGCCAAGGCCCTAAGGCAGGAGCTGCAGAGACAGTGGCAGCTGCTGGGGTCTGTGCACTGGGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 72 bp CGGGCCCTTAGCTGCTGCAGTTCTGATTCTAGGGCCTaGTGGGAGGTCTTGCCCTGCTGCAGGGCTTCCCGG +
Preference number: 6 (lower is better)
Translates to: RALSCCSSDSRA*WEVLPCCRASR
Trigger: CCGGGAAGCCCTGCAGCAGGGCAAGACCTCCCACCAGGCCCTAGAATCAGAACTGCAGCAGCTAAGGGCCCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 72 bp GCTGCAGTTCTGATTCTAGGGCCTGGTGGGAGGTCTTaGCCTGCTGCAGGGCTTCCCGGAGCCGGGCATTCT +
Preference number: 6 (lower is better)
Translates to: AAVLILGPGGRS*PAAGLPGAGHS
Trigger: AGAATGCCCGGCTCCGGGAAGCCCTGCAGCAGGGCAAGACCTCCCACCAGGCCCTAGAATCAGAACTGCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 72 bp GCCCTTAGCTGCTGCAGTTCTGATTCTAGGGCCTGGTaGGAGGTCTTGCCCTGCTGCAGGGCTTCCCGGAGC +
Preference number: 6 (lower is better)
Translates to: ALSCCSSDSRAW*EVLPCCRASRS
Trigger: GCTCCGGGAAGCCCTGCAGCAGGGCAAGACCTCCCACCAGGCCCTAGAATCAGAACTGCAGCAGCTAAGGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 72 bp GGTGGTAGTGGTGCGGATGGCGGCTGTGCTCTTCCCTaGGCCCCACAACTCTGGGGTTCCAGGAGTGCTTCT +
Preference number: 6 (lower is better)
Translates to: GGSGADGGCALP*APQLWGSRSAS
Trigger: AGAAGCACTCCTGGAACCCCAGAGTTGTGGGGCCCAGGGAAGAGCACAGCCGCCATCCGCACCACTACCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CAA 72 bp AGGGAGATGCCCAGCTCTCCACCTATACCCTCGCCCTaGGCCTGGTCCTCCACATCTACGGGTACCACGGGC +
Preference number: 6 (lower is better)
Translates to: REMPSSPPIPSP*AWSSTSTGTTG
Trigger: GCCCGTGGTACCCGTAGATGTGGAGGACCAGGCCAAGGGCGAGGGTATAGGTGGAGAGCTGGGCATCTCCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
CDS CAA 90 bp AGGATCCCCAGGCCCAGAAGAACCAGGGCCCCCAGGAAACACATGTaGAGGGAGATGCCCAGCTCTCCACCTATACCCTCGCCCTTGGCC +
Preference number: 6 (lower is better)
Translates to: RIPRPRRTRAPRKHM*REMPSSPPIPSPLA
Trigger: GGCCAAGGGCGAGGGTATAGGTGGAGAGCTGGGCATCTCCCTCAACATGTGTTTCCTGGGGGCCCTGGTTCTTCTGGGCCTGGGGATCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
CDS GCA 72 bp ACCAGTTCAGTCTCCGGCCCGGTTTCTGGAAAGACCTaGAACTCGGCTTCCTCCATGGGCCCAGTCTCGGGC +
Preference number: 6 (lower is better)
Translates to: TSSVSGPVSGKT*NSASSMGPVSG
Trigger: GCCCGAGACTGGGCCCATGGAGGAAGCCGAGTTGCAGGTCTTTCCAGAAACCGGGCCGGAGACTGAACTGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
CDS GCA 72 bp TGCCTTAGGGCCTTGGCCTCCGCCTCAAGCTGCTTATaGTGCTCCAATAAGCTGGGGTCTGGCTCCTGCCCC +
Preference number: 6 (lower is better)
Translates to: CLRALASASSCL*CSNKLGSGSCP
Trigger: GGGGCAGGAGCCAGACCCCAGCTTATTGGAGCAGCATAAGCAGCTTGAGGCGGAGGCCAAGGCCCTAAGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 72 bp GGTGTACCTTGGGGTCCTGTCGCTTGCTGTCCTTTCTaGTCCCAGATTCGTCCGCCCGCAGTCTGTCCTCCC +
Preference number: 6 (lower is better)
Translates to: GVPWGPVACCPF*SQIRPPAVCPP
Trigger: GGGAGGACAGACTGCGGGCGGACGAATCTGGGAGCAGAAAGGACAGCAAGCGACAGGACCCCAAGGTACACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 72 bp ATGCCCAGCTCTCCACCTATACCCTCGCCCTTGGCCTaGTCCTCCACATCTACGGGTACCACGGGCTGGGAT +
Preference number: 6 (lower is better)
Translates to: MPSSPPIPSPLA*SSTSTGTTGWD
Trigger: ATCCCAGCCCGTGGTACCCGTAGATGTGGAGGACCAGGCCAAGGGCGAGGGTATAGGTGGAGAGCTGGGCAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
CDS CAA 90 bp CACATGTTGAGGGAGATGCCCAGCTCTCCACCTATACCCTCGCCCTaGGCCTGGTCCTCCACATCTACGGGTACCACGGGCTGGGATGAG +
Preference number: 6 (lower is better)
Translates to: HMLREMPSSPPIPSP*AWSSTSTGTTGWDE
Trigger: CTCATCCCAGCCCGTGGTACCCGTAGATGTGGAGGACCAGGCCAAGGGCGAGGGTATAGGTGGAGAGCTGGGCATCTCCCTCAACATGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
CDS GCA 72 bp GGTTCTCCTTGGCCAGCTTGTCCAGCAGAAACCCCATaGTCTGCAGGCTGGGGACACTGTCTGGTGGGACAC +
Preference number: 6 (lower is better)
Translates to: GSPWPACPAETP*SAGWGHCLVGH
Trigger: GTGTCCCACCAGACAGTGTCCCCAGCCTGCAGAGCATGGGGTTTCTGCTGGACAAGCTGGCCAAGGAGAACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 72 bp CTTAGGGCCTTGGCCTCCGCCTCAAGCTGCTTATGCTaGTCCAATAAGCTGGGGTCTGGCTCCTGCCCCTTG +
Preference number: 6 (lower is better)
Translates to: LRALASASSCLC*SNKLGSGSCPL
Trigger: CAAGGGGCAGGAGCCAGACCCCAGCTTATTGGAGCAGCATAAGCAGCTTGAGGCGGAGGCCAAGGCCCTAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 72 bp AGCTCCTGCCTTAGGGCCTTGGCCTCCGCCTCAAGCTaGTTATGCTGCTCCAATAAGCTGGGGTCTGGCTCC +
Preference number: 6 (lower is better)
Translates to: SSCLRALASASS*LCCSNKLGSGS
Trigger: GGAGCCAGACCCCAGCTTATTGGAGCAGCATAAGCAGCTTGAGGCGGAGGCCAAGGCCCTAAGGCAGGAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 72 bp CTGTGGATGGATCTCACTCTCCAGGTCCTGTGTGTCTaGTCCGAGGCTCGTCGCCACAGGAGTCTCCTGCGA +
Preference number: 6 (lower is better)
Translates to: LWMDLTLQVLCV*SEARRHRSLLR
Trigger: TCGCAGGAGACTCCTGTGGCGACGAGCCTCGGACCAGACACACAGGACCTGGAGAGTGAGATCCATCCACAG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
ENSMUST00000145753.2
ENSMUST00000146630.8
CDS CCA 72 bp CTTCTCCAAAGTAAGCAGGTGAGAGGGGCAGCTGTTTaGTCAGCTGCCCGGCCCAGGGCAGCCGAGACAAGT +
Preference number: 6 (lower is better)
Translates to: LLQSKQVRGAAV*SAARPRAAETS
Trigger: ACTTGTCTCGGCTGCCCTGGGCCGGGCAGCTGACCAAACAGCTGCCCCTCTCACCTGCTTACTTTGGAGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 72 bp CAGTTAGCCTCTAGCCCTTGGAGTCGGGCCCTTAGCTaGTGCAGTTCTGATTCTAGGGCCTGGTGGGAGGTC +
Preference number: 6 (lower is better)
Translates to: QLASSPWSRALS*CSSDSRAWWEV
Trigger: GACCTCCCACCAGGCCCTAGAATCAGAACTGCAGCAGCTAAGGGCCCGACTCCAAGGGCTAGAGGCTAACTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 72 bp CAGAGTCTCTACCAGTTCAGTCTCCGGCCCGGTTTCTaGAAAGACCTGCAACTCGGCTTCCTCCATGGGCCC +
Preference number: 6 (lower is better)
Translates to: QSLYQFSLRPGF*KDLQLGFLHGP
Trigger: GGGCCCATGGAGGAAGCCGAGTTGCAGGTCTTTCCAGAAACCGGGCCGGAGACTGAACTGGTAGAGACTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
CDS CAA 72 bp AGGCCCAGAAGAACCAGGGCCCCCAGGAAACACATGTaGAGGGAGATGCCCAGCTCTCCACCTATACCCTCG +
Preference number: 6 (lower is better)
Translates to: RPRRTRAPRKHM*REMPSSPPIPS
Trigger: CGAGGGTATAGGTGGAGAGCTGGGCATCTCCCTCAACATGTGTTTCCTGGGGGCCCTGGTTCTTCTGGGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
CDS CAA 72 bp AGCTGCCACTGTCTCTGCAGCTCCTGCCTTAGGGCCTaGGCCTCCGCCTCAAGCTGCTTATGCTGCTCCAAT +
Preference number: 6 (lower is better)
Translates to: SCHCLCSSCLRA*ASASSCLCCSN
Trigger: ATTGGAGCAGCATAAGCAGCTTGAGGCGGAGGCCAAGGCCCTAAGGCAGGAGCTGCAGAGACAGTGGCAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CAA 90 bp TTGCGCCTCAGCAGCTCCTCCCAGGAGGACAGGGCGTCAGGGCTGTaGTCTTTCCCCCAAGAATGCTTCTGCCTTTCTACAGAATGGGAG +
Preference number: 6 (lower is better)
Translates to: LRLSSSSQEDRASGL*SFPQECFCLSTEWE
Trigger: CTCCCATTCTGTAGAAAGGCAGAAGCATTCTTGGGGGAAAGACAACAGCCCTGACGCCCTGTCCTCCTGGGAGGAGCTGCTGAGGCGCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 72 bp AGGCTGGGGACACTGTCTGGTGGGACACTTGAAGCCTaGAGGTGCTCTATCTCATCCTGCCTGTTCCCCAGA +
Preference number: 6 (lower is better)
Translates to: RLGTLSGGTLEA*RCSISSCLFPR
Trigger: TCTGGGGAACAGGCAGGATGAGATAGAGCACCTGCAGGCTTCAAGTGTCCCACCAGACAGTGTCCCCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 72 bp TCCTTGGCCAGCTTGTCCAGCAGAAACCCCATGCTCTaGAGGCTGGGGACACTGTCTGGTGGGACACTTGAA +
Preference number: 6 (lower is better)
Translates to: SLASLSSRNPML*RLGTLSGGTLE
Trigger: TTCAAGTGTCCCACCAGACAGTGTCCCCAGCCTGCAGAGCATGGGGTTTCTGCTGGACAAGCTGGCCAAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 72 bp TCTTCCCTGGGCCCCACAACTCTGGGGTTCCAGGAGTaGTTCTCCTTCTTTCGTGACCTCTTCTTCAGGGCC +
Preference number: 6 (lower is better)
Translates to: SSLGPTTLGFQE*FSFFRDLFFRA
Trigger: GGCCCTGAAGAAGAGGTCACGAAAGAAGGAGAAGCACTCCTGGAACCCCAGAGTTGTGGGGCCCAGGGAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 72 bp CCTCCGCCTCAAGCTGCTTATGCTGCTCCAATAAGCTaGGGTCTGGCTCCTGCCCCTTGTGGCCTTGTTCTT +
Preference number: 6 (lower is better)
Translates to: PPPQAAYAAPIS*GLAPAPCGLVL
Trigger: AAGAACAAGGCCACAAGGGGCAGGAGCCAGACCCCAGCTTATTGGAGCAGCATAAGCAGCTTGAGGCGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CAA 72 bp TGCTCTGCAGGCTGGGGACACTGTCTGGTGGGACACTaGAAGCCTGCAGGTGCTCTATCTCATCCTGCCTGT +
Preference number: 6 (lower is better)
Translates to: CSAGWGHCLVGH*KPAGALSHPAC
Trigger: ACAGGCAGGATGAGATAGAGCACCTGCAGGCTTCAAGTGTCCCACCAGACAGTGTCCCCAGCCTGCAGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CAA 72 bp GGCTCCTGCCCCTTGTGGCCTTGTTCTTTAGTGGCCTaGCCATCCTGTGGATCTCCACCCCAGTTGAGACAC +
Preference number: 6 (lower is better)
Translates to: GSCPLWPCSLVA*PSCGSPPQLRH
Trigger: GTGTCTCAACTGGGGTGGAGATCCACAGGATGGCAAGGCCACTAAAGAACAAGGCCACAAGGGGCAGGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS TCA 72 bp TCCGAGTCATTGGGGGACCTGCCAGTGTTGATACCCTaGTTCTCGAGGTCCTGCAGTGTCTGGGCCAACATG +
Preference number: 6 (lower is better)
Translates to: SESLGDLPVLIP*FSRSCSVWANM
Trigger: CATGTTGGCCCAGACACTGCAGGACCTCGAGAATCAGGGTATCAACACTGGCAGGTCCCCCAATGACTCGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 72 bp CCATCTACACCCCGGACACAGTTAGCCTCTAGCCCTTaGAGTCGGGCCCTTAGCTGCTGCAGTTCTGATTCT +
Preference number: 6 (lower is better)
Translates to: PSTPRTQLASSP*SRALSCCSSDS
Trigger: AGAATCAGAACTGCAGCAGCTAAGGGCCCGACTCCAAGGGCTAGAGGCTAACTGTGTCCGGGGTGTAGATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 72 bp TGCTCCAATAAGCTGGGGTCTGGCTCCTGCCCCTTGTaGCCTTGTTCTTTAGTGGCCTTGCCATCCTGTGGA +
Preference number: 6 (lower is better)
Translates to: CSNKLGSGSCPL*PCSLVALPSCG
Trigger: TCCACAGGATGGCAAGGCCACTAAAGAACAAGGCCACAAGGGGCAGGAGCCAGACCCCAGCTTATTGGAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CAA 72 bp AGCAGCTCCTCCCAGGAGGACAGGGCGTCAGGGCTGTaGTCTTTCCCCCAAGAATGCTTCTGCCTTTCTACA +
Preference number: 6 (lower is better)
Translates to: SSSSQEDRASGL*SFPQECFCLST
Trigger: TGTAGAAAGGCAGAAGCATTCTTGGGGGAAAGACAACAGCCCTGACGCCCTGTCCTCCTGGGAGGAGCTGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 72 bp GGGACACTTGAAGCCTGCAGGTGCTCTATCTCATCCTaGCTGTTCCCCAGAGTCTCTACCAGTTCAGTCTCC +
Preference number: 6 (lower is better)
Translates to: GTLEACRCSISS*LFPRVSTSSVS
Trigger: GGAGACTGAACTGGTAGAGACTCTGGGGAACAGGCAGGATGAGATAGAGCACCTGCAGGCTTCAAGTGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 72 bp TGCTTATGCTGCTCCAATAAGCTGGGGTCTGGCTCCTaGCCCTTGTGGCCTTGTTCTTTAGTGGCCTTGCCA +
Preference number: 6 (lower is better)
Translates to: CLCCSNKLGSGS*PLWPCSLVALP
Trigger: TGGCAAGGCCACTAAAGAACAAGGCCACAAGGGGCAGGAGCCAGACCCCAGCTTATTGGAGCAGCATAAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 72 bp GACCCTCCACATCTACATCAGTGTCGTCGTCACTGCTaGAGCAGCGATGCTCTTTCCAAACTGCTCTGGGAC +
Preference number: 6 (lower is better)
Translates to: DPPHLHQCRRHC*SSDALSKLLWD
Trigger: GTCCCAGAGCAGTTTGGAAAGAGCATCGCTGCTCCAGCAGTGACGACGACACTGATGTAGATGTGGAGGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
ENSMUST00000145753.2
CDS CCA 72 bp CACTGCTGGAGCAGCGATGCTCTTTCCAAACTGCTCTaGGACTGGAGGGTAAGTTCTGTGGATGGATCTCAC +
Preference number: 6 (lower is better)
Translates to: HCWSSDALSKLL*DWRVSSVDGSH
Trigger: GTGAGATCCATCCACAGAACTTACCCTCCAGTCCCAGAGCAGTTTGGAAAGAGCATCGCTGCTCCAGCAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
ENSMUST00000145753.2
CDS CCA 72 bp CTTGTGGCCTTGTTCTTTAGTGGCCTTGCCATCCTGTaGATCTCCACCCCAGTTGAGACACACCCCATCTAC +
Preference number: 6 (lower is better)
Translates to: LVALFFSGLAIL*ISTPVETHPIY
Trigger: GTAGATGGGGTGTGTCTCAACTGGGGTGGAGATCCACAGGATGGCAAGGCCACTAAAGAACAAGGCCACAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CAA 72 bp ACAGAATGGGAGTTCCCATCTTTCCTAGGGTGTACCTaGGGGTCCTGTCGCTTGCTGTCCTTTCTGCTCCCA +
Preference number: 6 (lower is better)
Translates to: TEWEFPSFLGCT*GSCRLLSFLLP
Trigger: TGGGAGCAGAAAGGACAGCAAGCGACAGGACCCCAAGGTACACCCTAGGAAAGATGGGAACTCCCATTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CAA 90 bp TGCCTTTCTACAGAATGGGAGTTCCCATCTTTCCTAGGGTGTACCTaGGGGTCCTGTCGCTTGCTGTCCTTTCTGCTCCCAGATTCGTCC +
Preference number: 6 (lower is better)
Translates to: CLSTEWEFPSFLGCT*GSCRLLSFLLPDSS
Trigger: GGACGAATCTGGGAGCAGAAAGGACAGCAAGCGACAGGACCCCAAGGTACACCCTAGGAAAGATGGGAACTCCCATTCTGTAGAAAGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS GCA 72 bp GACAGGGCGTCAGGGCTGTTGTCTTTCCCCCAAGAATaGTTCTGCCTTTCTACAGAATGGGAGTTCCCATCT +
Preference number: 6 (lower is better)
Translates to: DRASGLLSFPQE*FCLSTEWEFPS
Trigger: AGATGGGAACTCCCATTCTGTAGAAAGGCAGAAGCATTCTTGGGGGAAAGACAACAGCCCTGACGCCCTGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CAA 90 bp TTCCAGGAGTGCTTCTCCTTCTTTCGTGACCTCTTCTTCAGGGCCTaGTCCCCAAAGAAGTGGCCGAAGACAAAGTCCTCAAAGTCATCC +
Preference number: 6 (lower is better)
Translates to: FQECFSFFRDLFFRA*SPKKWPKTKSSKSS
Trigger: GGATGACTTTGAGGACTTTGTCTTCGGCCACTTCTTTGGGGACAAGGCCCTGAAGAAGAGGTCACGAAAGAAGGAGAAGCACTCCTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 72 bp CGTGACCTCTTCTTCAGGGCCTTGTCCCCAAAGAAGTaGCCGAAGACAAAGTCCTCAAAGTCATCCACTTCA +
Preference number: 6 (lower is better)
Translates to: RDLFFRALSPKK*PKTKSSKSSTS
Trigger: TGAAGTGGATGACTTTGAGGACTTTGTCTTCGGCCACTTCTTTGGGGACAAGGCCCTGAAGAAGAGGTCACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CAA 72 bp TGCTTCTCCTTCTTTCGTGACCTCTTCTTCAGGGCCTaGTCCCCAAAGAAGTGGCCGAAGACAAAGTCCTCA +
Preference number: 6 (lower is better)
Translates to: CFSFFRDLFFRA*SPKKWPKTKSS
Trigger: TGAGGACTTTGTCTTCGGCCACTTCTTTGGGGACAAGGCCCTGAAGAAGAGGTCACGAAAGAAGGAGAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038942.10
CDS CCA 72 bp GTCAGAACAGCAGTTTCTCTCTGGGAACTTTCCGTCTaGAAAAGCTTCTCTTCTCCATCCAAGGTCCCAGCT +
Preference number: 6 (lower is better)
Translates to: VRTAVSLWELSV*KSFSSPSKVPA
Trigger: AGCTGGGACCTTGGATGGAGAAGAGAAGCTTTTCCAGACGGAAAGTTCCCAGAGAGAAACTGCTGTTCTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
ENSMUST00000145753.2
ENSMUST00000146630.8
CDS CCA 72 bp TTGGCCGCAGACTCTGTCAGAACAGCAGTTTCTCTCTaGGAACTTTCCGTCTGGAAAAGCTTCTCTTCTCCA +
Preference number: 6 (lower is better)
Translates to: LAADSVRTAVSL*ELSVWKSFSSP
Trigger: TGGAGAAGAGAAGCTTTTCCAGACGGAAAGTTCCCAGAGAGAAACTGCTGTTCTGACAGAGTCTGCGGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000038942.10
ENSMUST00000130858.8
ENSMUST00000145753.2
ENSMUST00000146630.8