Pregenerated sensors for PBX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034673Ensembl transcript IDs: ENSMUST00000038149.13, ENSMUST00000173328.8
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCTGTCTTGTCTCTTACTAGGCCCCTTTGGCTCTTACTTCTCAAGTaGGTAAACAAAAATAAATCAGCATGTTTATTTAAGACACACACA | + |
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Preference number: 1 (lower is better) Translates to: SVLSLTRPLWLLLLK*VNKNKSACLFKTHT Trigger: TGTGTGTGTCTTAAATAAACATGCTGATTTATTTTTGTTTACCCACTTGAGAAGTAAGAGCCAAAGGGGCCTAGTAAGAGACAAGACAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| 3UTR-3UTR GCA 90 bp | CACCCCACTCTCCCTGCCATGTTGTCAGCACCCCAGCACCAAGCGTCTGGTCGGAGAGTCCTTAAGAGTTaGCTGGTGGAAGCCCCTAGC | + |
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Preference number: 2 (lower is better) Translates to: HPTLPAMLSAPQHQASGRRVLKS*LVEAPS Trigger: GCTAGGGGCTTCCACCAGGCAACTCTTAAGGACTCT...CCGACCAGACGCTTGGTGCTGGGGTGCTGACAACATGGCAGGGAGAGTGGGGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| 3UTR-3UTR CCA 90 bp | AGAAACCCACGTGTCCAGGCTGAGGACCTGGTGTCCTACAAAATCCGATTCCCCTGGGGGAGGGGGTGTTaGCCCAGGGCCTCTGTCCAA | + |
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Preference number: 2 (lower is better) Translates to: RNPRVQAEDLVSYKIRFPWGRGC*PRASVQ Trigger: TTGGACAGAGGCCCTGGGCCAACACCCCCTCCCCCA...GGGGAATCGGATTTTGTAGGACACCAGGTCCTCAGCCTGGACACGTGGGTTTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| 3UTR-3UTR TCA 90 bp | AGAAACCCACGTGTCCAGGCTGAGGACCTGGTGTCCTACAAAATCCGATTCCCCTGGGTCGGGCAGGGCTaGCATCTCCAGATTCCAGAG | + |
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Preference number: 2 (lower is better) Translates to: RNPRVQAEDLVSYKIRFPWVGQG*HLQIPE Trigger: CTCTGGAATCTGGAGATGTCAGCCCTGCCCGACCCA...GGGGAATCGGATTTTGTAGGACACCAGGTCCTCAGCCTGGACACGTGGGTTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| 3UTR-3UTR GCA 90 bp | AGAAACCCACGTGTCCAGGCTGAGGACCTGGTGTCCTACAAAATCCGATTCCCCACACCCCACTCTCCCTaGCATGTTGTCAGCACCCCA | + |
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Preference number: 2 (lower is better) Translates to: RNPRVQAEDLVSYKIRFPTPHSP*HVVSTP Trigger: TGGGGTGCTGACAACATGGCAGGGAGAGTGGGGTGT...GGGGAATCGGATTTTGTAGGACACCAGGTCCTCAGCCTGGACACGTGGGTTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| 3UTR-3UTR CCA 90 bp | CACCCCACTCTCCCTGCCATGTTGTCAGCACCCCAGCACCAAGCGTCTGGTCGGTGTTTTGTGCTTCTGTaGGGTTTGTCCTCTAGATGC | + |
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Preference number: 2 (lower is better) Translates to: HPTLPAMLSAPQHQASGRCFVLL*GLSSRC Trigger: GCATCTAGAGGACAAACCCCACAGAAGCACAAAACA...CCGACCAGACGCTTGGTGCTGGGGTGCTGACAACATGGCAGGGAGAGTGGGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| 3UTR-3UTR TCA 90 bp | ACATGTACTTCTGGGAAACTGGGGGAGACACATATAGAAGCACCCAGCCCATATCCCACGTGTCCAGGCTaGGGACCTGGTGTCCTACAA | + |
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Preference number: 2 (lower is better) Translates to: TCTSGKLGETHIEAPSPYPTCPG*GPGVLQ Trigger: TTGTAGGACACCAGGTCCTCAGCCTGGACACGTGGG...ATATGGGCTGGGTGCTTCTATATGTGTCTCCCCCAGTTTCCCAGAAGTACATGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| 3UTR-3UTR CCA 90 bp | ACATGTACTTCTGGGAAACTGGGGGAGACACATATAGAAGCACCCAGCCCATATTTGCCCAAAGGTTACTaGGGAGGTGGGGGAGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: TCTSGKLGETHIEAPSPYLPKGY*GGGGGR Trigger: CCTGCCTCCCCCACCTCCCCAGTAACCTTTGGGCAA...ATATGGGCTGGGTGCTTCTATATGTGTCTCCCCCAGTTTCCCAGAAGTACATGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| 3UTR-3UTR GCA 90 bp | ACATGTACTTCTGGGAAACTGGGGGAGACACATATAGAAGCACCCAGCCCATATAGAGTCCTTAAGAGTTaGCTGGTGGAAGCCCCTAGC | + |
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Preference number: 2 (lower is better) Translates to: TCTSGKLGETHIEAPSPYRVLKS*LVEAPS Trigger: GCTAGGGGCTTCCACCAGGCAACTCTTAAGGACTCT...ATATGGGCTGGGTGCTTCTATATGTGTCTCCCCCAGTTTCCCAGAAGTACATGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| 3UTR-3UTR GCA 90 bp | GGGAACAGAAGTAGGAGGAGTCCAAGACAAACACAACTGGTGTTAGGTTGTAGATCGCCCTCTGTTTTGTaGTTCTGTGGGGTTTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: GNRSRRSPRQTQLVLGCRSPSVL*FCGVCP Trigger: AGGACAAACCCCACAGAAGCACAAAACAGAGGGCGA...TCTACAACCTAACACCAGTTGTGTTTGTCTTGGACTCCTCCTACTTCTGTTCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| 3UTR-3UTR CCA 90 bp | ACATGTACTTCTGGGAAACTGGGGGAGACACATATAGAAGCACCCAGCCCATATCTTACTAGGCCCCTTTaGCTCTTACTTCTCAAGTGG | + |
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Preference number: 2 (lower is better) Translates to: TCTSGKLGETHIEAPSPYLTRPL*LLLLKW Trigger: CCACTTGAGAAGTAAGAGCCAAAGGGGCCTAGTAAG...ATATGGGCTGGGTGCTTCTATATGTGTCTCCCCCAGTTTCCCAGAAGTACATGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| 3UTR-3UTR GCA 90 bp | CATGTTTATTTAAGACACACACACACACCCCACACACACCCAAAACCCTACTTCTCGCCCTCTGTTTTGTaGTTCTGTGGGGTTTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: HVYLRHTHTPHTHPKPYFSPSVL*FCGVCP Trigger: AGGACAAACCCCACAGAAGCACAAAACAGAGGGCGA...GAAGTAGGGTTTTGGGTGTGTGTGGGGTGTGTGTGTGTGTCTTAAATAAACATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| 3UTR-3UTR GCA 90 bp | GGGAACAGAAGTAGGAGGAGTCCAAGACAAACACAACTGGTGTTAGGTTGTAGAGGTTTGTCCTCTAGATaGCCAGAGTCCTTAAGAGTT | + |
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Preference number: 2 (lower is better) Translates to: GNRSRRSPRQTQLVLGCRGLSSR*PESLRV Trigger: AACTCTTAAGGACTCTGGGCATCTAGAGGACAAACC...TCTACAACCTAACACCAGTTGTGTTTGTCTTGGACTCCTCCTACTTCTGTTCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| 3UTR-3UTR TCA 90 bp | ACATGTACTTCTGGGAAACTGGGGGAGACACATATAGAAGCACCCAGCCCATATCTTTTTCAAAATCACTaGGTTCAGTCTAGTCTTGCC | + |
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Preference number: 2 (lower is better) Translates to: TCTSGKLGETHIEAPSPYLFQNH*VQSSLA Trigger: GGCAAGACTAGACTGAACTCAGTGATTTTGAAAAAG...ATATGGGCTGGGTGCTTCTATATGTGTCTCCCCCAGTTTCCCAGAAGTACATGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| 3UTR-3UTR CAA 90 bp | CACCCCACTCTCCCTGCCATGTTGTCAGCACCCCAGCACCAAGCGTCTGGTCGGGTGCTTCTGTGGGGTTaGTCCTCTAGATGCCCAGAG | + |
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Preference number: 3 (lower is better) Translates to: HPTLPAMLSAPQHQASGRVLLWG*SSRCPE Trigger: CTCTGGGCATCTAGAGGACAAACCCCACAGAAGCAC...CCGACCAGACGCTTGGTGCTGGGGTGCTGACAACATGGCAGGGAGAGTGGGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| 3UTR-3UTR CAA 90 bp | GGGAACAGAAGTAGGAGGAGTCCAAGACAAACACAACTGGTGTTAGGTTGTAGAGTGCTTCTGTGGGGTTaGTCCTCTAGATGCCCAGAG | + |
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Preference number: 3 (lower is better) Translates to: GNRSRRSPRQTQLVLGCRVLLWG*SSRCPE Trigger: CTCTGGGCATCTAGAGGACAAACCCCACAGAAGCAC...TCTACAACCTAACACCAGTTGTGTTTGTCTTGGACTCCTCCTACTTCTGTTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| 3UTR-3UTR CAA 90 bp | GGCATGAGATTAAGAACTGAACAGAAACATGTACTTCTGGGAAACTGGGGGAGACAATCGCCCTCTGTTTaGTGCTTCTGTGGGGTTTGT | + |
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Preference number: 3 (lower is better) Translates to: GMRLRTEQKHVLLGNWGRQSPSV*CFCGVC Trigger: ACAAACCCCACAGAAGCACAAAACAGAGGGCGATTG...TCTCCCCCAGTTTCCCAGAAGTACATGTTTCTGTTCAGTTCTTAATCTCATGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| CDS-3UTR CCA 90 bp | GCCATGTTGTCAGCACCCCAGCACCAAGCGTCTGGTCGGGGAGGGCACAACCCCTGCGCTCCATCTCCTTaGGGGCGACCGGGCGAGTGC | + |
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Preference number: 4 (lower is better) Translates to: AMLSAPQHQASGRGGHNPCAPSP*GRPGEC Trigger: GCACTCGCCCGGTCGCCCCCAAGGAGATGGAGCGCA...GGGGTTGTGCCCTCCCCGACCAGACGCTTGGTGCTGGGGTGCTGACAACATGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| CDS-3UTR GCA 90 bp | GCCATGTTGTCAGCACCCCAGCACCAAGCGTCTGGTCGGGGAGGGCACAACCCCAGCTGCAGCAGCTGCTaGGGAGCCGCCCCCTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: AMLSAPQHQASGRGGHNPSCSSC*GAAPFL Trigger: GAGAAAGGGGGCGGCTCCGCAGCAGCTGCTGCAGCT...GGGGTTGTGCCCTCCCCGACCAGACGCTTGGTGCTGGGGTGCTGACAACATGGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| CDS-3UTR GCA 90 bp | GCCATGTTGTCAGCACCCCAGCACCAAGCGTCTGGTCGGGGAGGGCACAACCCCAGAGCCGCCAGAGCCTaGAGAGGAAGGGGGCGTTGG | + |
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Preference number: 4 (lower is better) Translates to: AMLSAPQHQASGRGGHNPRAARA*RGRGRW Trigger: CCAACGCCCCCTTCCTCTGCAGGCTCTGGCGGCTCT...GGGGTTGTGCCCTCCCCGACCAGACGCTTGGTGCTGGGGTGCTGACAACATGGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| CDS-3UTR GCA 90 bp | TTGTCCTCTAGATGCCCAGAGTCCTTAAGAGTTGCCTGGTGGAAGCCCCTAGCCGGAGGCTGCGGCAGCTaGAGCAGCTGCTGCGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: LSSRCPESLRVAWWKPLAGGCGS*SSCCGA Trigger: GGCTCCGCAGCAGCTGCTGCAGCTGCCGCAGCCTCC...GGCTAGGGGCTTCCACCAGGCAACTCTTAAGGACTCTGGGCATCTAGAGGACAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| CDS-3UTR GCA 90 bp | TTGTCCTCTAGATGCCCAGAGTCCTTAAGAGTTGCCTGGTGGAAGCCCCTAGCCGCCACCACCGGAGGCTaGGGCAGCTGCAGCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LSSRCPESLRVAWWKPLAATTGG*GSCSSC Trigger: GCAGCTGCTGCAGCTGCCGCAGCCTCCGGTGGTGGC...GGCTAGGGGCTTCCACCAGGCAACTCTTAAGGACTCTGGGCATCTAGAGGACAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| CDS-3UTR GCA 90 bp | AGAAACCCACGTGTCCAGGCTGAGGACCTGGTGTCCTACAAAATCCGATTCCCCGGGCGACCGGGCGAGTaGGGCTCTGCTCCCTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: RNPRVQAEDLVSYKIRFPGRPGE*GSAPSA Trigger: TGCTGAGGGAGCAGAGCCGCACTCGCCCGGTCGCCC...GGGGAATCGGATTTTGTAGGACACCAGGTCCTCAGCCTGGACACGTGGGTTTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| CDS-3UTR CCA 90 bp | CACCCCACTCTCCCTGCCATGTTGTCAGCACCCCAGCACCAAGCGTCTGGTCGGTCCGGCGTTTCCGTCTaGCATCCAGGAAGCGAGAAC | + |
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Preference number: 4 (lower is better) Translates to: HPTLPAMLSAPQHQASGRSGVSV*HPGSEN Trigger: GTTCTCGCTTCCTGGATGCCAGACGGAAACGCCGGA...CCGACCAGACGCTTGGTGCTGGGGTGCTGACAACATGGCAGGGAGAGTGGGGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| CDS-3UTR GCA 90 bp | TTGTCCTCTAGATGCCCAGAGTCCTTAAGAGTTGCCTGGTGGAAGCCCCTAGCCGGGGTCACAGCCTCCTaGCAGCCACCATTGGCCCGA | + |
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Preference number: 4 (lower is better) Translates to: LSSRCPESLRVAWWKPLAGVTAS*QPPLAR Trigger: TCGGGCCAATGGTGGCTGGCAGGAGGCTGTGACCCC...GGCTAGGGGCTTCCACCAGGCAACTCTTAAGGACTCTGGGCATCTAGAGGACAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| CDS-3UTR TCA 90 bp | CACCCCACTCTCCCTGCCATGTTGTCAGCACCCCAGCACCAAGCGTCTGGTCGGCGAGGACTGTATATCTaGCCTCCCCCAATGTTATCC | + |
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Preference number: 4 (lower is better) Translates to: HPTLPAMLSAPQHQASGRRGLYI*PPPMLS Trigger: GGATAACATTGGGGGAGGTCAGATATACAGTCCTCG...CCGACCAGACGCTTGGTGCTGGGGTGCTGACAACATGGCAGGGAGAGTGGGGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| CDS-3UTR GCA 90 bp | TCTGGGAAACTGGGGGAGACACATATAGAAGCACCCAGCCCATATTTAGCGTATGCCACCACCGGAGGCTaGGGCAGCTGCAGCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: SGKLGETHIEAPSPYLAYATTGG*GSCSSC Trigger: GCAGCTGCTGCAGCTGCCGCAGCCTCCGGTGGTGGC...ATACGCTAAATATGGGCTGGGTGCTTCTATATGTGTCTCCCCCAGTTTCCCAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| CDS-3UTR GCA 90 bp | GGGAACAGAAGTAGGAGGAGTCCAAGACAAACACAACTGGTGTTAGGTTGTAGAGGGCGACCGGGCGAGTaGGGCTCTGCTCCCTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: GNRSRRSPRQTQLVLGCRGRPGE*GSAPSA Trigger: TGCTGAGGGAGCAGAGCCGCACTCGCCCGGTCGCCC...TCTACAACCTAACACCAGTTGTGTTTGTCTTGGACTCCTCCTACTTCTGTTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| CDS-3UTR GCA 90 bp | ACATGTACTTCTGGGAAACTGGGGGAGACACATATAGAAGCACCCAGCCCATATAGAGCCGCCAGAGCCTaGAGAGGAAGGGGGCGTTGG | + |
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Preference number: 4 (lower is better) Translates to: TCTSGKLGETHIEAPSPYRAARA*RGRGRW Trigger: CCAACGCCCCCTTCCTCTGCAGGCTCTGGCGGCTCT...ATATGGGCTGGGTGCTTCTATATGTGTCTCCCCCAGTTTCCCAGAAGTACATGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| CDS-3UTR CCA 90 bp | CATGTTTATTTAAGACACACACACACACCCCACACACACCCAAAACCCTACTTCTGCGCTCCATCTCCTTaGGGGCGACCGGGCGAGTGC | + |
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Preference number: 4 (lower is better) Translates to: HVYLRHTHTPHTHPKPYFCAPSP*GRPGEC Trigger: GCACTCGCCCGGTCGCCCCCAAGGAGATGGAGCGCA...GAAGTAGGGTTTTGGGTGTGTGTGGGGTGTGTGTGTGTGTCTTAAATAAACATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| CDS-3UTR GCA 90 bp | AGTAGGAGGAGTCCAAGACAAACACAACTGGTGTTAGGTTGTAGATTTAAGAGAGGAGGCTGCGGCAGCTaGAGCAGCTGCTGCGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: SRRSPRQTQLVLGCRFKRGGCGS*SSCCGA Trigger: GGCTCCGCAGCAGCTGCTGCAGCTGCCGCAGCCTCC...TCTCTTAAATCTACAACCTAACACCAGTTGTGTTTGTCTTGGACTCCTCCTACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| CDS-3UTR GCA 90 bp | GGCATGAGATTAAGAACTGAACAGAAACATGTACTTCTGGGAAACTGGGGGAGAGGGGTCACAGCCTCCTaGCAGCCACCATTGGCCCGA | + |
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Preference number: 4 (lower is better) Translates to: GMRLRTEQKHVLLGNWGRGVTAS*QPPLAR Trigger: TCGGGCCAATGGTGGCTGGCAGGAGGCTGTGACCCC...TCTCCCCCAGTTTCCCAGAAGTACATGTTTCTGTTCAGTTCTTAATCTCATGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| CDS-3UTR CCA 90 bp | TCTGGGAAACTGGGGGAGACACATATAGAAGCACCCAGCCCATATTTAGCGTATTTAGGGCATGTTTCTTaGCCTGGGCCTCGTCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: SGKLGETHIEAPSPYLAYLGHVS*PGPRPG Trigger: GCCTGGACGAGGCCCAGGCCAAGAAACATGCCCTAA...ATACGCTAAATATGGGCTGGGTGCTTCTATATGTGTCTCCCCCAGTTTCCCAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| CDS-3UTR CCA 90 bp | AGTAGGAGGAGTCCAAGACAAACACAACTGGTGTTAGGTTGTAGATTTAAGAGATCCGGCGTTTCCGTCTaGCATCCAGGAAGCGAGAAC | + |
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Preference number: 4 (lower is better) Translates to: SRRSPRQTQLVLGCRFKRSGVSV*HPGSEN Trigger: GTTCTCGCTTCCTGGATGCCAGACGGAAACGCCGGA...TCTCTTAAATCTACAACCTAACACCAGTTGTGTTTGTCTTGGACTCCTCCTACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| CDS-3UTR GCA 90 bp | GGGAACAGAAGTAGGAGGAGTCCAAGACAAACACAACTGGTGTTAGGTTGTAGATGTGAACTCATTGCATaGCTGCTCATACTTCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: GNRSRRSPRQTQLVLGCRCELIA*LLILLQ Trigger: CTGGAGAAGTATGAGCAGGCATGCAATGAGTTCACA...TCTACAACCTAACACCAGTTGTGTTTGTCTTGGACTCCTCCTACTTCTGTTCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| CDS-3UTR TCA 90 bp | AGTAGGAGGAGTCCAAGACAAACACAACTGGTGTTAGGTTGTAGATTTAAGAGACGAGGACTGTATATCTaGCCTCCCCCAATGTTATCC | + |
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Preference number: 4 (lower is better) Translates to: SRRSPRQTQLVLGCRFKRRGLYI*PPPMLS Trigger: GGATAACATTGGGGGAGGTCAGATATACAGTCCTCG...TCTCTTAAATCTACAACCTAACACCAGTTGTGTTTGTCTTGGACTCCTCCTACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| CDS-3UTR GCA 90 bp | AGTAGGAGGAGTCCAAGACAAACACAACTGGTGTTAGGTTGTAGATTTAAGAGATGTGAACTCATTGCATaGCTGCTCATACTTCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: SRRSPRQTQLVLGCRFKRCELIA*LLILLQ Trigger: CTGGAGAAGTATGAGCAGGCATGCAATGAGTTCACA...TCTCTTAAATCTACAACCTAACACCAGTTGTGTTTGTCTTGGACTCCTCCTACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| CDS-3UTR CAA 90 bp | GCCATGTTGTCAGCACCCCAGCACCAAGCGTCTGGTCGGGGAGGGCACAACCCCGATGTTCGCCTCCTCTaGGAACTTCCCAATATTCTT | + |
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Preference number: 5 (lower is better) Translates to: AMLSAPQHQASGRGGHNPDVRLL*ELPNIL Trigger: AAGAATATTGGGAAGTTCCAAGAGGAGGCGAACATC...GGGGTTGTGCCCTCCCCGACCAGACGCTTGGTGCTGGGGTGCTGACAACATGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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| CDS-3UTR CAA 90 bp | TTGTCCTCTAGATGCCCAGAGTCCTTAAGAGTTGCCTGGTGGAAGCCCCTAGCCTTTAGGGCATGTTTCTaGGCCTGGGCCTCGTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: LSSRCPESLRVAWWKPLAFRACF*AWASSR Trigger: CCTGGACGAGGCCCAGGCCAAGAAACATGCCCTAAA...GGCTAGGGGCTTCCACCAGGCAACTCTTAAGGACTCTGGGCATCTAGAGGACAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038149.13 |
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| CDS-3UTR CAA 90 bp | AGTAGGAGGAGTCCAAGACAAACACAACTGGTGTTAGGTTGTAGATTTAAGAGAGATGTTCGCCTCCTCTaGGAACTTCCCAATATTCTT | + |
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Preference number: 5 (lower is better) Translates to: SRRSPRQTQLVLGCRFKRDVRLL*ELPNIL Trigger: AAGAATATTGGGAAGTTCCAAGAGGAGGCGAACATC...TCTCTTAAATCTACAACCTAACACCAGTTGTGTTTGTCTTGGACTCCTCCTACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038149.13 ENSMUST00000173328.8 |
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