RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PBX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052534

Ensembl transcript IDs: ENSMUST00000064438.11, ENSMUST00000072863.6, ENSMUST00000176540.8, ENSMUST00000176790.8, ENSMUST00000188912.7

Found 259 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGGTGGGCCTCTCAGCACAGCCACTGCCTAGAGAGAAGCATTCTGTaGGGGTGGCACTGCTGTGGCCTGATCCACTCATGTCCCTTCATG +
Preference number: 1 (lower is better)
Translates to: RWASQHSHCLERSIL*GWHCCGLIHSCPFM
Trigger: CATGAAGGGACATGAGTGGATCAGGCCACAGCAGTGCCACCCTCACAGAATGCTTCTCTCTAGGCAGTGGCTGTGCTGAGAGGCCCACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 90 bp TTGGAGGTGACAGTGGGCATGGAGAACAGACTGCTGGCTACATGTTaGACCTTCAGGAGGCCTAATGAAGTGCTGGGTAGGTGGGCCTCT +
Preference number: 1 (lower is better)
Translates to: LEVTVGMENRLLATC*TFRRPNEVLGRWAS
Trigger: AGAGGCCCACCTACCCAGCACTTCATTAGGCCTCCTGAAGGTTCAACATGTAGCCAGCAGTCTGTTCTCCATGCCCACTGTCACCTCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 90 bp CTTTCCACTTCTATCTGGAGGCTGCCAGTTTTCCCTAGCCTTGCTTaGCCACAGAGATCTGGTGGCTGCCACATTGGAGGTGACAGTGGG +
Preference number: 1 (lower is better)
Translates to: LSTSIWRLPVFPSLA*PQRSGGCHIGGDSG
Trigger: CCCACTGTCACCTCCAATGTGGCAGCCACCAGATCTCTGTGGTCAAGCAAGGCTAGGGAAAACTGGCAGCCTCCAGATAGAAGTGGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 90 bp ATGGGCCCAGGGCCTGCTTCACAGATCTACTCTACTGGGTTATGGTaGCCTCCACAGCAGTGCTTTTCTGCCTGGAGAAAGATCCTGTCT +
Preference number: 1 (lower is better)
Translates to: MGPGPASQIYSTGLW*PPQQCFSAWRKILS
Trigger: AGACAGGATCTTTCTCCAGGCAGAAAAGCACTGCTGTGGAGGGCACCATAACCCAGTAGAGTAGATCTGTGAAGCAGGCCCTGGGCCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 90 bp CATTCTAATTGCAGCCTTGACCCAGGCTCCTCACTTTACCCACACTaGACACAGAATACGGGGACTCTGGATCCCAAGAAGATGGGCCCA +
Preference number: 1 (lower is better)
Translates to: HSNCSLDPGSSLYPH*TQNTGTLDPKKMGP
Trigger: TGGGCCCATCTTCTTGGGATCCAGAGTCCCCGTATTCTGTGTGCAGTGTGGGTAAAGTGAGGAGCCTGGGTCAAGGCTGCAATTAGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 90 bp CACTGTGGGCTTGTCTCTCAGCCCTCAAGCTCTTGTACTTCTTCCTaGGAGTCCCTGAAGCAGAAGAGTTGTCATAGGGACAAGGACTTG +
Preference number: 1 (lower is better)
Translates to: HCGLVSQPSSSCTSS*ESLKQKSCHRDKDL
Trigger: CAAGTCCTTGTCCCTATGACAACTCTTCTGCTTCAGGGACTCCCAGGAAGAAGTACAAGAGCTTGAGGGCTGAGAGACAAGCCCACAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 90 bp TTGGGCTCACCAGGTAGAGCACTATGCTTGCTAATGTACAGGATTTaGTTGCTGGGAGACCATCTGGGAGGTATCAGAGTGAACGCTGCC +
Preference number: 1 (lower is better)
Translates to: LGSPGRALCLLMYRI*LLGDHLGGIRVNAA
Trigger: GGCAGCGTTCACTCTGATACCTCCCAGATGGTCTCCCAGCAATCAAATCCTGTACATTAGCAAGCATAGTGCTCTACCTGGTGAGCCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 90 bp AGCTCTGCCTTTGCTGTTCTTTGTGCCCTTACCTGCCAGACTTCCTaGCTAGGACTCAACCTGATGGAACTACATTGGGATATGTGGCAC +
Preference number: 1 (lower is better)
Translates to: SSAFAVLCALTCQTS*LGLNLMELHWDMWH
Trigger: GTGCCACATATCCCAATGTAGTTCCATCAGGTTGAGTCCTAGGCAGGAAGTCTGGCAGGTAAGGGCACAAAGAACAGCAAAGGCAGAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 90 bp CTACATCGTGTTAGTATCATTAGAGAACACAAACGTTCGTTCCGCTaGAATCGAAGGGGACAGAGGCCTGTGCTCGCACGGAAGCAGAGA +
Preference number: 1 (lower is better)
Translates to: LHRVSIIREHKRSFR*NRRGQRPVLARKQR
Trigger: TCTCTGCTTCCGTGCGAGCACAGGCCTCTGTCCCCTTCGATTGCAGCGGAACGAACGTTTGTGTTCTCTAATGATACTAACACGATGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 90 bp AGCCAAGTTTTTAGAGGCACACTCTTTCCACTTCTATCTGGAGGCTaGCAGTTTTCCCTAGCCTTGCTTGACCACAGAGATCTGGTGGCT +
Preference number: 1 (lower is better)
Translates to: SQVFRGTLFPLLSGG*QFSLALLDHRDLVA
Trigger: AGCCACCAGATCTCTGTGGTCAAGCAAGGCTAGGGAAAACTGGCAGCCTCCAGATAGAAGTGGAAAGAGTGTGCCTCTAAAAACTTGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 90 bp AACACAAACGTTCGTTCCGCTGCAATCGAAGGGGACAGAGGCCTGTaGTCGCACGGAAGCAGAGAAGCTTCAACTTTCAAAACCAAAGTA +
Preference number: 1 (lower is better)
Translates to: NTNVRSAAIEGDRGL*SHGSREASTFKTKV
Trigger: TACTTTGGTTTTGAAAGTTGAAGCTTCTCTGCTTCCGTGCGAGCACAGGCCTCTGTCCCCTTCGATTGCAGCGGAACGAACGTTTGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 90 bp TCCCCCAGGTTCCAGGTATACAGGCCCAACTCCTCCAAACACACATaGAGCATGTCTCCTATTTATCACTGCATGTGGAATGTGTTTGGC +
Preference number: 1 (lower is better)
Translates to: SPRFQVYRPNSSKHT*SMSPIYHCMWNVFG
Trigger: GCCAAACACATTCCACATGCAGTGATAAATAGGAGACATGCTTCATGTGTGTTTGGAGGAGTTGGGCCTGTATACCTGGAACCTGGGGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 90 bp GATCTACTCTACTGGGTTATGGTGCCCTCCACAGCAGTGCTTTTCTaGCTGGAGAAAGATCCTGTCTTGTTGGAAGCATACTTGTGGACT +
Preference number: 1 (lower is better)
Translates to: DLLYWVMVPSTAVLF*LEKDPVLLEAYLWT
Trigger: AGTCCACAAGTATGCTTCCAACAAGACAGGATCTTTCTCCAGGCAGAAAAGCACTGCTGTGGAGGGCACCATAACCCAGTAGAGTAGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 90 bp GCTTCACAGATCTACTCTACTGGGTTATGGTGCCCTCCACAGCAGTaGTTTTCTGCCTGGAGAAAGATCCTGTCTTGTTGGAAGCATACT +
Preference number: 1 (lower is better)
Translates to: ASQIYSTGLWCPPQQ*FSAWRKILSCWKHT
Trigger: AGTATGCTTCCAACAAGACAGGATCTTTCTCCAGGCAGAAAAGCACTGCTGTGGAGGGCACCATAACCCAGTAGAGTAGATCTGTGAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 90 bp TCTCTTAGGACACAGAAACAAGAGCTAAGCTGTCTCCAGGTGGACTaGTTCCTACAGCAGAGCTCCACTACTCACGCTTGTCTTCTTTAC +
Preference number: 1 (lower is better)
Translates to: SLRTQKQELSCLQVD*FLQQSSTTHACLLY
Trigger: GTAAAGAAGACAAGCGTGAGTAGTGGAGCTCTGCTGTAGGAAGCAGTCCACCTGGAGACAGCTTAGCTCTTGTTTCTGTGTCCTAAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 90 bp ATTAATACTACTACCACAGGGAAGGAAGTGGAGAGAAGGTGCCTGTaGGCTCAACAGCTACCCAGAAGTCCATTCTACTCTAAGGGGAAG +
Preference number: 1 (lower is better)
Translates to: INTTTTGKEVERRCL*AQQLPRSPFYSKGK
Trigger: CTTCCCCTTAGAGTAGAATGGACTTCTGGGTAGCTGTTGAGCCCACAGGCACCTTCTCTCCACTTCCTTCCCTGTGGTAGTAGTATTAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 90 bp TACTCTACTGGGTTATGGTGCCCTCCACAGCAGTGCTTTTCTGCCTaGAGAAAGATCCTGTCTTGTTGGAAGCATACTTGTGGACTGTTG +
Preference number: 1 (lower is better)
Translates to: YSTGLWCPPQQCFSA*RKILSCWKHTCGLL
Trigger: CAACAGTCCACAAGTATGCTTCCAACAAGACAGGATCTTTCTCCAGGCAGAAAAGCACTGCTGTGGAGGGCACCATAACCCAGTAGAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 90 bp TCCCTGAGAGCTTCAGAGGTGGTAGGAATGAAGACAGTTTACTCTTaGATCCTGGCCCATGTTAATGAAGTCCTGCACATCCTACTGTGG +
Preference number: 1 (lower is better)
Translates to: SLRASEVVGMKTVYS*ILAHVNEVLHILLW
Trigger: CCACAGTAGGATGTGCAGGACTTCATTAACATGGGCCAGGATTCAAGAGTAAACTGTCTTCATTCCTACCACCTCTGAAGCTCTCAGGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 90 bp ACGACAACTGCCAGGCACGTAGATAACATCCATGTGTCTACCATGTaGCAGATCCCATGCAAAACCCTTGACTCAAACGATCCTCGCAAT +
Preference number: 1 (lower is better)
Translates to: TTTARHVDNIHVSTM*QIPCKTLDSNDPRN
Trigger: ATTGCGAGGATCGTTTGAGTCAAGGGTTTTGCATGGGATCTGTCACATGGTAGACACATGGATGTTATCTACGTGCCTGGCAGTTGTCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR GCA 90 bp GAAGAGGCGATGATAAACAAGCTATACGGTAGCAACCCCAAGGTCTaGTACCATCTCTCAGGGAGAGAGAATTGCTATTGTGGAAGACAG +
Preference number: 1 (lower is better)
Translates to: EEAMINKLYGSNPKV*YHLSGRENCYCGRQ
Trigger: CTGTCTTCCACAATAGCAATTCTCTCTCCCTGAGAGATGGTAGCAGACCTTGGGGTTGCTACCGTATAGCTTGTTTATCATCGCCTCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 90 bp TGTGGCCTGATCCACTCATGTCCCTTCATGTGTTCCATCCAGAGCTaGGGTCACTCTTGTTTCCAAGAGAACCCTTCAGCAAATCTTATA +
Preference number: 1 (lower is better)
Translates to: CGLIHSCPFMCSIQS*GHSCFQENPSANLI
Trigger: TATAAGATTTGCTGAAGGGTTCTCTTGGAAACAAGAGTGACCCCAGCTCTGGATGGAACACATGAAGGGACATGAGTGGATCAGGCCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 90 bp ATTTTACAGAGGAAGTGCATGAGGCCCCAAAGATATCTGACCACTTaGCACTTAATCTACTGGCAAAGCTGCCATCTTTATGGCTGGCAG +
Preference number: 1 (lower is better)
Translates to: ILQRKCMRPQRYLTT*HLIYWQSCHLYGWQ
Trigger: CTGCCAGCCATAAAGATGGCAGCTTTGCCAGTAGATTAAGTGGCAAGTGGTCAGATATCTTTGGGGCCTCATGCACTTCCTCTGTAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 90 bp CACATGAAGCATGTCTCCTATTTATCACTGCATGTGGAATGTGTTTaGCACTGTGGGCTTGTCTCTCAGCCCTCAAGCTCTTGTACTTCT +
Preference number: 1 (lower is better)
Translates to: HMKHVSYLSLHVECV*HCGLVSQPSSSCTS
Trigger: AGAAGTACAAGAGCTTGAGGGCTGAGAGACAAGCCCACAGTGCCAAACACATTCCACATGCAGTGATAAATAGGAGACATGCTTCATGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 90 bp CTATGTGTGTGTATGTCTATGAAGGGACAGTGCAGCCTTTCAAGATaGGATCCTTCACTCTTTATAGACACCCTCATCAGGATGCCTCTC +
Preference number: 1 (lower is better)
Translates to: LCVCMSMKGQCSLSR*DPSLFIDTLIRMPL
Trigger: GAGAGGCATCCTGATGAGGGTGTCTATAAAGAGTGAAGGATCTCATCTTGAAAGGCTGCACTGTCCCTTCATAGACATACACACACATAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 90 bp CCCCAAAGATATCTGACCACTTGCCACTTAATCTACTGGCAAAGCTaGCATCTTTATGGCTGGCAGAACCATCTGGAGAATTTAAGCTCA +
Preference number: 1 (lower is better)
Translates to: PQRYLTTCHLIYWQS*HLYGWQNHLENLSS
Trigger: TGAGCTTAAATTCTCCAGATGGTTCTGCCAGCCATAAAGATGGCAGCTTTGCCAGTAGATTAAGTGGCAAGTGGTCAGATATCTTTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 90 bp TTGTGCACCAGAAATATGCTTTCTGGAATTTCTACTCATGTCACGTaGCTTTGTGTATGGGAAGGGAAGGTAACTCTGCCTTGCAAGCCT +
Preference number: 1 (lower is better)
Translates to: LCTRNMLSGISTHVT*LCVWEGKVTLPCKP
Trigger: AGGCTTGCAAGGCAGAGTTACCTTCCCTTCCCATACACAAAGGCACGTGACATGAGTAGAAATTCCAGAAAGCATATTTCTGGTGCACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR CCA 90 bp CCTCCACAGCAGTGCTTTTCTGCCTGGAGAAAGATCCTGTCTTGTTaGAAGCATACTTGTGGACTGTTGAAGTTAATCAGGGAGAAAGAA +
Preference number: 1 (lower is better)
Translates to: PPQQCFSAWRKILSC*KHTCGLLKLIREKE
Trigger: TTCTTTCTCCCTGATTAACTTCAACAGTCCACAAGTATGCTTCCAACAAGACAGGATCTTTCTCCAGGCAGAAAAGCACTGCTGTGGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 90 bp TGTGCATGTGTCCACCTGTGTGTTACCTATGTGTGTGTATGTCTATaGAGGGACAGTGCAGCCTTTCAAGATGAGATCCTTCACTCTTTA +
Preference number: 1 (lower is better)
Translates to: CACVHLCVTYVCVCL*RDSAAFQDEILHSL
Trigger: TAAAGAGTGAAGGATCTCATCTTGAAAGGCTGCACTGTCCCTTCATAGACATACACACACATAGGTAACACACAGGTGGACACATGCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 90 bp GGGAAGCAACTTGCTCAGATGAACACACATAAATGGTGGCAGCACTaGGACTACCATGTGGTCATTTATAGTCCCTCATTTCTGTCTGTA +
Preference number: 1 (lower is better)
Translates to: GKQLAQMNTHKWWQH*DYHVVIYSPSFLSV
Trigger: TACAGACAGAAATGAGGGACTATAAATGACCACATGGTAGTCTCAGTGCTGCCACCATTTATGTGTGTTCATCTGAGCAAGTTGCTTCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR GCA 90 bp ATAATAATTAATACTACTACCACAGGGAAGGAAGTGGAGAGAAGGTaGCTGTGGGCTCAACAGCTACCCAGAAGTCCATTCTACTCTAAG +
Preference number: 1 (lower is better)
Translates to: IIINTTTTGKEVERR*LWAQQLPRSPFYSK
Trigger: CTTAGAGTAGAATGGACTTCTGGGTAGCTGTTGAGCCCACAGGCACCTTCTCTCCACTTCCTTCCCTGTGGTAGTAGTATTAATTATTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 90 bp CATGTCACGTGCCTTTGTGTATGGGAAGGGAAGGTAACTCTGCCTTaGAAGCCTTTCTCCTTATTTCTGTCACAAAGACTTTATCCTCTT +
Preference number: 1 (lower is better)
Translates to: HVTCLCVWEGKVTLP*KPFSLFLSQRLYPL
Trigger: AAGAGGATAAAGTCTTTGTGACAGAAATAAGGAGAAAGGCTTGCAAGGCAGAGTTACCTTCCCTTCCCATACACAAAGGCACGTGACATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR CCA 90 bp ACCACTTGCCACTTAATCTACTGGCAAAGCTGCCATCTTTATGGCTaGCAGAACCATCTGGAGAATTTAAGCTCATGTCAAAAGCAAGAC +
Preference number: 1 (lower is better)
Translates to: TTCHLIYWQSCHLYG*QNHLENLSSCQKQD
Trigger: GTCTTGCTTTTGACATGAGCTTAAATTCTCCAGATGGTTCTGCCAGCCATAAAGATGGCAGCTTTGCCAGTAGATTAAGTGGCAAGTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 90 bp CTTTTCTGCCTGGAGAAAGATCCTGTCTTGTTGGAAGCATACTTGTaGACTGTTGAAGTTAATCAGGGAGAAAGAAAACCCTTGGTTGGG +
Preference number: 1 (lower is better)
Translates to: LFCLEKDPVLLEAYL*TVEVNQGERKPLVG
Trigger: CCCAACCAAGGGTTTTCTTTCTCCCTGATTAACTTCAACAGTCCACAAGTATGCTTCCAACAAGACAGGATCTTTCTCCAGGCAGAAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 90 bp TTCTTTTCCCCTATGACCAATACAGACTTTCCGATGAAGCCCACCTaGCAATTTAAAGAGTTAACCTCACCAGAGGTTAGCAACAAGTGG +
Preference number: 1 (lower is better)
Translates to: FFSPMTNTDFPMKPT*QFKELTSPEVSNKW
Trigger: CCACTTGTTGCTAACCTCTGGTGAGGTTAACTCTTTAAATTGCCAGGTGGGCTTCATCGGAAAGTCTGTATTGGTCATAGGGGAAAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 90 bp AATATGCTTTCTGGAATTTCTACTCATGTCACGTGCCTTTGTGTATaGGAAGGGAAGGTAACTCTGCCTTGCAAGCCTTTCTCCTTATTT +
Preference number: 1 (lower is better)
Translates to: NMLSGISTHVTCLCV*EGKVTLPCKPFSLF
Trigger: AAATAAGGAGAAAGGCTTGCAAGGCAGAGTTACCTTCCCTTCCCATACACAAAGGCACGTGACATGAGTAGAAATTCCAGAAAGCATATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR TCA 90 bp CTAGCTTCTAAGGAGACCTCCAGGTGTAAGCAGCTTCCTCTCTCTTaGAATAACTTACTCCCTCTGTTAACATTCAATTCTATGAAAATT +
Preference number: 1 (lower is better)
Translates to: LASKETSRCKQLPLS*NNLLPLLTFNSMKI
Trigger: AATTTTCATAGAATTGAATGTTAACAGAGGGAGTAAGTTATTTCAAGAGAGAGGAAGCTGCTTACACCTGGAGGTCTCCTTAGAAGCTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR TCA 90 bp CTTATAATGTGCTTTATGGAAAATGATGTGGTCCAACCATTGTTCTaGGAGTGGTTTCAATGTATTCCTGCCACAAAGACAAAAATCACC +
Preference number: 1 (lower is better)
Translates to: LIMCFMENDVVQPLF*EWFQCIPATKTKIT
Trigger: GGTGATTTTTGTCTTTGTGGCAGGAATACATTGAAACCACTCTCAGAACAATGGTTGGACCACATCATTTTCCATAAAGCACATTATAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 90 bp CTTACTCCCTCTGTTAACATTCAATTCTATGAAAATTCTTTCTTGTaGACCAGAAATATGCTTTCTGGAATTTCTACTCATGTCACGTGC +
Preference number: 1 (lower is better)
Translates to: LTPSVNIQFYENSFL*TRNMLSGISTHVTC
Trigger: GCACGTGACATGAGTAGAAATTCCAGAAAGCATATTTCTGGTGCACAAGAAAGAATTTTCATAGAATTGAATGTTAACAGAGGGAGTAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR GCA 90 bp TTAACATTCAATTCTATGAAAATTCTTTCTTGTGCACCAGAAATATaGTTTCTGGAATTTCTACTCATGTCACGTGCCTTTGTGTATGGG +
Preference number: 1 (lower is better)
Translates to: LTFNSMKILSCAPEI*FLEFLLMSRAFVYG
Trigger: CCCATACACAAAGGCACGTGACATGAGTAGAAATTCCAGAAAGCATATTTCTGGTGCACAAGAAAGAATTTTCATAGAATTGAATGTTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR-3UTR GCA 90 bp CTGCGGCACAGGGTCAGCCGGGATGCGATTGCTGGGAGATCAGTTGGAGGTATCCCTCCCTCCTGGCCCTaGCCCAACTGCGGCACAGGG +
Preference number: 2 (lower is better)
Translates to: LRHRVSRDAIAGRSVGGIPPSWP*PNCGTG
Trigger: CCCTGTGCCGCAGTTGGGGCAGGGCCAGGAGGGAGG...GATACCTCCAACTGATCTCCCAGCAATCGCATCCCGGCTGACCCTGTGCCGCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176790.8
3UTR-3UTR GCA 90 bp TTTTCCCTAGCCTTGCTTGACCACAGAGATCTGGTGGCTGCCACATTGGAGGTGCCTCCCTCCTGGCCCTaGCCCAACTGCGGCACAGGG +
Preference number: 2 (lower is better)
Translates to: FSLALLDHRDLVAATLEVPPSWP*PNCGTG
Trigger: CCCTGTGCCGCAGTTGGGGCAGGGCCAGGAGGGAGG...CACCTCCAATGTGGCAGCCACCAGATCTCTGTGGTCAAGCAAGGCTAGGGAAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR TCA 90 bp TCCTTCAGTGAAGTCATAGAGGGCAGGGACCGGGCGTCTATAACAGAGAGCAGGCTTCGACCTCCAGTCTaGCCGCTTCAGCGTTGGGAG +
Preference number: 2 (lower is better)
Translates to: SFSEVIEGRDRASITESRLRPPV*PLQRWE
Trigger: CTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAG...CCTGCTCTCTGTTATAGACGCCCGGTCCCTGCCCTCTATGACTTCACTGAAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
3UTR-3UTR GCA 90 bp TCCTTCAGTGAAGTCATAGAGGGCAGGGACCGGGCGTCTATAACAGAGAGCAGGCAGCCGGGATGCGATTaGTGGGAGATCAGTTGGAGG +
Preference number: 2 (lower is better)
Translates to: SFSEVIEGRDRASITESRQPGCD*WEISWR
Trigger: CCTCCAACTGATCTCCCAGCAATCGCATCCCGGCTG...CCTGCTCTCTGTTATAGACGCCCGGTCCCTGCCCTCTATGACTTCACTGAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176790.8
3UTR-3UTR CCA 90 bp GATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAACCCTCCCTCCGGGATGCGATTGCTaGGAGATCAGTTGGAGGTAT +
Preference number: 2 (lower is better)
Translates to: DCFDLQSDRFSVGRETLPPGCDC*EISWRY
Trigger: ATACCTCCAACTGATCTCCCAGCAATCGCATCCCGG...AGGGAGGGTTTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176790.8
3UTR-3UTR TCA 90 bp GCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAACCCTCCCTCCTGAGTGTCCAGATTGGCTaGAATAGCATCCCAAAGAAG +
Preference number: 2 (lower is better)
Translates to: ASTSSLTASALGEKPSLLSVQIG*NSIPKK
Trigger: CTTCTTTGGGATGCTATTTCAGCCAATCTGGACACT...CAGGAGGGAGGGTTTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
3UTR-3UTR TCA 90 bp AGGAGACTCTTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCACTTCGACCTCCAGTCTaGCCGCTTCAGCGTTGGGAG +
Preference number: 2 (lower is better)
Translates to: RRLLLCLLIASTSSLTASLRPPV*PLQRWE
Trigger: CTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAG...TGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
3UTR-3UTR TCA 90 bp GTATCATTAGAGAACACAAACGTTCGTTCCGCTGCAATCGAAGGGGACAGAGGCTTCCCTAGCCTTGCTTaGCCACAGAGATCTGGTGGC +
Preference number: 2 (lower is better)
Translates to: VSLENTNVRSAAIEGDRGFPSLA*PQRSGG
Trigger: GCCACCAGATCTCTGTGGTCAAGCAAGGCTAGGGAA...GCCTCTGTCCCCTTCGATTGCAGCGGAACGAACGTTTGTGTTCTCTAATGATAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR GCA 90 bp TGTCTCTCAGCCCTCAAGCTCTTGTACTTCTTCCTGGGAGTCCCTGAAGCAGAACTTTGTGCCCTTACCTaGCAGACTTCCTGCCTAGGA +
Preference number: 2 (lower is better)
Translates to: CLSALKLLYFFLGVPEAELCALT*QTSCLG
Trigger: TCCTAGGCAGGAAGTCTGGCAGGTAAGGGCACAAAG...TTCTGCTTCAGGGACTCCCAGGAAGAAGTACAAGAGCTTGAGGGCTGAGAGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CCA 90 bp TGGCACTGTGGGCTTGTCTCTCAGCCCTCAAGCTCTTGTACTTCTTCCTGGGAGATGAGTAGGGCAGTGTaGTGTATTCCTGCTAAGAGG +
Preference number: 2 (lower is better)
Translates to: WHCGLVSQPSSSCTSSWEMSRAV*CIPAKR
Trigger: CCTCTTAGCAGGAATACACCACACTGCCCTACTCAT...CTCCCAGGAAGAAGTACAAGAGCTTGAGGGCTGAGAGACAAGCCCACAGTGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 90 bp TACCTGCCAGACTTCCTGCCTAGGACTCAACCTGATGGAACTACATaGGGATATGTGGCACCTTTAGAAGCCCAGTTATGGCCATCCCCA +
Preference number: 2 (lower is better)
Translates to: YLPDFLPRTQPDGTT*GYVAPLEAQLWPSP
Trigger: TGGGGATGGCCATAACTGGGCTTCTAAAGGTGCCACATATCCCAATGTAGTTCCATCAGGTTGAGTCCTAGGCAGGAAGTCTGGCAGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR TCA 90 bp TCCTGCCACAAAGACAAAAATCACCGGTTCTCATCACTACCACACACACACACATGGGAGGTATCAGAGTaGACGCTGCCAGGGCCTTCT +
Preference number: 2 (lower is better)
Translates to: SCHKDKNHRFSSLPHTHTWEVSE*TLPGPS
Trigger: AGAAGGCCCTGGCAGCGTTCACTCTGATACCTCCCA...TGTGTGTGTGTGTGGTAGTGATGAGAACCGGTGATTTTTGTCTTTGTGGCAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR GCA 90 bp TTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGGGGTAGTAGCATCCTaGCAACCTCCATTAGCACTG +
Preference number: 2 (lower is better)
Translates to: LLCLLIASTSSLTASALGGVVAS*QPPLAL
Trigger: CAGTGCTAATGGAGGTTGGCAGGATGCTACTACCCC...TCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176790.8
3UTR-3UTR TCA 90 bp TTGGCACTGTGGGCTTGTCTCTCAGCCCTCAAGCTCTTGTACTTCTTCCTGGGAAGTGTCCAGATTGGCTaGAATAGCATCCCAAAGAAG +
Preference number: 2 (lower is better)
Translates to: LALWACLSALKLLYFFLGSVQIG*NSIPKK
Trigger: CTTCTTTGGGATGCTATTTCAGCCAATCTGGACACT...TCCCAGGAAGAAGTACAAGAGCTTGAGGGCTGAGAGACAAGCCCACAGTGCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CCA 90 bp TTTTCCCCTATGACCAATACAGACTTTCCGATGAAGCCCACCTGGCAATTTAAAGAAGTGCTGGGTAGGTaGGCCTCTCAGCACAGCCAC +
Preference number: 2 (lower is better)
Translates to: FSPMTNTDFPMKPTWQFKEVLGR*ASQHSH
Trigger: GTGGCTGTGCTGAGAGGCCCACCTACCCAGCACTTC...TTTAAATTGCCAGGTGGGCTTCATCGGAAAGTCTGTATTGGTCATAGGGGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR TCA 90 bp AGAGGCACACTCTTTCCACTTCTATCTGGAGGCTGCCAGTTTTCCCTAGCCTTGCTAATGTACAGGATTTaGTTGCTGGGAGACCATCTG +
Preference number: 2 (lower is better)
Translates to: RGTLFPLLSGGCQFSLALLMYRI*LLGDHL
Trigger: CAGATGGTCTCCCAGCAATCAAATCCTGTACATTAG...CAAGGCTAGGGAAAACTGGCAGCCTCCAGATAGAAGTGGAAAGAGTGTGCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR TCA 90 bp TCTGTTGTATACATGACTTGCCCAACAGCCCAAGGCTTGAGGATGGAGCCAGGAAGCAACTTGCTCAGATaGACACACATAAATGGTGGC +
Preference number: 2 (lower is better)
Translates to: SVVYMTCPTAQGLRMEPGSNLLR*THINGG
Trigger: GCCACCATTTATGTGTGTTCATCTGAGCAAGTTGCT...TCCTGGCTCCATCCTCAAGCCTTGGGCTGTTGGGCAAGTCATGTATACAACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR-3UTR CCA 90 bp GTATCATTAGAGAACACAAACGTTCGTTCCGCTGCAATCGAAGGGGACAGAGGCAAGCTGCCATCTTTATaGCTGGCAGAACCATCTGGA +
Preference number: 2 (lower is better)
Translates to: VSLENTNVRSAAIEGDRGKLPSL*LAEPSG
Trigger: TCCAGATGGTTCTGCCAGCCATAAAGATGGCAGCTT...GCCTCTGTCCCCTTCGATTGCAGCGGAACGAACGTTTGTGTTCTCTAATGATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 90 bp GTGCCCTCCACAGCAGTGCTTTTCTGCCTGGAGAAAGATCCTGTCTaGTTGGAAGCATACTTGTGGACTGTTGAAGTTAATCAGGGAGAA +
Preference number: 2 (lower is better)
Translates to: VPSTAVLFCLEKDPV*LEAYLWTVEVNQGE
Trigger: TTCTCCCTGATTAACTTCAACAGTCCACAAGTATGCTTCCAACAAGACAGGATCTTTCTCCAGGCAGAAAAGCACTGCTGTGGAGGGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 90 bp CATCTGGTTACAACATCTGCTAGCTCCCTGCTCACCAGCCTTGTTTaGTCTGATACAAGTGGCCAGCAGATATCCTCTGACTTCTTCGAA +
Preference number: 2 (lower is better)
Translates to: HLVTTSASSLLTSLV*SDTSGQQISSDFFE
Trigger: TTCGAAGAAGTCAGAGGATATCTGCTGGCCACTTGTATCAGACAAAACAAGGCTGGTGAGCAGGGAGCTAGCAGATGTTGTAACCAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR CAA 90 bp CCAATCATCTGGTTACAACATCTGCTAGCTCCCTGCTCACCAGCCTaGTTTTGTCTGATACAAGTGGCCAGCAGATATCCTCTGACTTCT +
Preference number: 2 (lower is better)
Translates to: PIIWLQHLLAPCSPA*FCLIQVASRYPLTS
Trigger: AGAAGTCAGAGGATATCTGCTGGCCACTTGTATCAGACAAAACAAGGCTGGTGAGCAGGGAGCTAGCAGATGTTGTAACCAGATGATTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR-3UTR TCA 90 bp TTTTCCCTAGCCTTGCTTGACCACAGAGATCTGGTGGCTGCCACATTGGAGGTGTATTCTGACCTAGCATaGCATGTTCATTATAGGGAG +
Preference number: 2 (lower is better)
Translates to: FSLALLDHRDLVAATLEVYSDLA*HVHYRE
Trigger: CTCCCTATAATGAACATGTCATGCTAGGTCAGAATA...CACCTCCAATGTGGCAGCCACCAGATCTCTGTGGTCAAGCAAGGCTAGGGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR TCA 90 bp GGAAATGCCCTATGTCACCAAAGATGGCACAAGATCCTAGAAGAGGGAAGCAACTTCTTGACATATCACTaGTGCCCTGCGGACTGTACA +
Preference number: 2 (lower is better)
Translates to: GNALCHQRWHKILEEGSNFLTYH*CPADCT
Trigger: TGTACAGTCCGCAGGGCATCAGTGATATGTCAAGAA...GTTGCTTCCCTCTTCTAGGATCTTGTGCCATCTTTGGTGACATAGGGCATTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR-3UTR GCA 90 bp TTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAATTGTGTTTGCTGATTaGTTCGACCTCCAGTCTGAC +
Preference number: 2 (lower is better)
Translates to: LLCLLIASTSSLTASALGIVFAD*FDLQSD
Trigger: GTCAGACTGGAGGTCGAAGCAATCAGCAAACACAAT...TCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
3UTR-3UTR GCA 90 bp TTTTCCCCTATGACCAATACAGACTTTCCGATGAAGCCCACCTGGCAATTTAAAGATGGGCCCAGGGCCTaGTTCACAGATCTACTCTAC +
Preference number: 2 (lower is better)
Translates to: FSPMTNTDFPMKPTWQFKDGPRA*FTDLLY
Trigger: GTAGAGTAGATCTGTGAAGCAGGCCCTGGGCCCATC...TTTAAATTGCCAGGTGGGCTTCATCGGAAAGTCTGTATTGGTCATAGGGGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CCA 90 bp AGAGGCACACTCTTTCCACTTCTATCTGGAGGCTGCCAGTTTTCCCTAGCCTTGCCTGACCATCAGACCTaGAGATTAAATACAAGCAAG +
Preference number: 2 (lower is better)
Translates to: RGTLFPLLSGGCQFSLALPDHQT*RLNTSK
Trigger: CTTGCTTGTATTTAATCTCCAGGTCTGATGGTCAGG...CAAGGCTAGGGAAAACTGGCAGCCTCCAGATAGAAGTGGAAAGAGTGTGCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CCA 90 bp GTATCATTAGAGAACACAAACGTTCGTTCCGCTGCAATCGAAGGGGACAGAGGCCAGTGCTTTTCTGCCTaGAGAAAGATCCTGTCTTGT +
Preference number: 2 (lower is better)
Translates to: VSLENTNVRSAAIEGDRGQCFSA*RKILSC
Trigger: ACAAGACAGGATCTTTCTCCAGGCAGAAAAGCACTG...GCCTCTGTCCCCTTCGATTGCAGCGGAACGAACGTTTGTGTTCTCTAATGATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 90 bp CATTTTACAGAGGAAGTGCATGAGGCCCCAAAGATATCTGACCACTaGCCACTTAATCTACTGGCAAAGCTGCCATCTTTATGGCTGGCA +
Preference number: 2 (lower is better)
Translates to: HFTEEVHEAPKISDH*PLNLLAKLPSLWLA
Trigger: TGCCAGCCATAAAGATGGCAGCTTTGCCAGTAGATTAAGTGGCAAGTGGTCAGATATCTTTGGGGCCTCATGCACTTCCTCTGTAAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 90 bp CCCTCCACAGCAGTGCTTTTCTGCCTGGAGAAAGATCCTGTCTTGTaGGAAGCATACTTGTGGACTGTTGAAGTTAATCAGGGAGAAAGA +
Preference number: 2 (lower is better)
Translates to: PSTAVLFCLEKDPVL*EAYLWTVEVNQGER
Trigger: TCTTTCTCCCTGATTAACTTCAACAGTCCACAAGTATGCTTCCAACAAGACAGGATCTTTCTCCAGGCAGAAAAGCACTGCTGTGGAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR TCA 90 bp AGGAGACTCTTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCATCTTATTGTGTTTGCTaGTTGCTTCGACCTCCAGTC +
Preference number: 2 (lower is better)
Translates to: RRLLLCLLIASTSSLTASSYCVC*LLRPPV
Trigger: GACTGGAGGTCGAAGCAATCAGCAAACACAATAAGA...TGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
3UTR-3UTR TCA 90 bp CCATGTGACAGATCCCATGCAAAACCCTTGACTCAAACGATCCTCGCAATGAACCCAGCAGATATCCTCTaGCTTCTTCGAAAGTCCATA +
Preference number: 2 (lower is better)
Translates to: PCDRSHAKPLTQTILAMNPADIL*LLRKSI
Trigger: TATGGACTTTCGAAGAAGTCAGAGGATATCTGCTGG...GTTCATTGCGAGGATCGTTTGAGTCAAGGGTTTTGCATGGGATCTGTCACATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR-3UTR GCA 90 bp GACAGATCCCATGCAAAACCCTTGACTCAAACGATCCTCGCAATGAACATTCATCATCTGCTAGCTCCCTaGTCACCAGCCTTGTTTTGT +
Preference number: 2 (lower is better)
Translates to: DRSHAKPLTQTILAMNIHHLLAP*SPALFC
Trigger: ACAAAACAAGGCTGGTGAGCAGGGAGCTAGCAGATG...ATGAATGTTCATTGCGAGGATCGTTTGAGTCAAGGGTTTTGCATGGGATCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR CAA 90 bp CACCAGAAATATGCTTTCTGGAATTTCTACTCATGTCACGTGCCTTaGTGTATGGGAAGGGAAGGTAACTCTGCCTTGCAAGCCTTTCTC +
Preference number: 2 (lower is better)
Translates to: HQKYAFWNFYSCHVP*CMGREGNSALQAFL
Trigger: GAGAAAGGCTTGCAAGGCAGAGTTACCTTCCCTTCCCATACACAAAGGCACGTGACATGAGTAGAAATTCCAGAAAGCATATTTCTGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR-3UTR TCA 90 bp GAAATATGCTTTCTGGAATTTCTACTCATGTCACGTGCCTTTGTGTATGGGAAGCCCTCCCACAGTGACTaGCATGTGGGAGATGCTATA +
Preference number: 2 (lower is better)
Translates to: EICFLEFLLMSRAFVYGKPSHSD*HVGDAI
Trigger: TATAGCATCTCCCACATGTCAGTCACTGTGGGAGGG...CTTCCCATACACAAAGGCACGTGACATGAGTAGAAATTCCAGAAAGCATATTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR-3UTR TCA 90 bp GACAGATCCCATGCAAAACCCTTGACTCAAACGATCCTCGCAATGAACATTCATTCTCTGTTGTATACATaGCTTGCCCAACAGCCCAAG +
Preference number: 2 (lower is better)
Translates to: DRSHAKPLTQTILAMNIHSLLYT*LAQQPK
Trigger: CTTGGGCTGTTGGGCAAGTCATGTATACAACAGAGA...ATGAATGTTCATTGCGAGGATCGTTTGAGTCAAGGGTTTTGCATGGGATCTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR-3UTR GCA 90 bp GTATCATTAGAGAACACAAACGTTCGTTCCGCTGCAATCGAAGGGGACAGAGGCAGATATCTGACCACTTaGCACTTAATCTACTGGCAA +
Preference number: 2 (lower is better)
Translates to: VSLENTNVRSAAIEGDRGRYLTT*HLIYWQ
Trigger: TTGCCAGTAGATTAAGTGGCAAGTGGTCAGATATCT...GCCTCTGTCCCCTTCGATTGCAGCGGAACGAACGTTTGTGTTCTCTAATGATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CCA 90 bp TCCTGCCACAAAGACAAAAATCACCGGTTCTCATCACTACCACACACACACACAAAAATGGAGACAGAGTaGCTTGGAATGAGTAGGGCA +
Preference number: 2 (lower is better)
Translates to: SCHKDKNHRFSSLPHTHTKMETE*LGMSRA
Trigger: TGCCCTACTCATTCCAAGCCACTCTGTCTCCATTTT...TGTGTGTGTGTGTGGTAGTGATGAGAACCGGTGATTTTTGTCTTTGTGGCAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 90 bp CCACTCATGTCCCTTCATGTGTTCCATCCAGAGCTGGGGTCACTCTaGTTTCCAAGAGAACCCTTCAGCAAATCTTATAATGTGCTTTAT +
Preference number: 2 (lower is better)
Translates to: PLMSLHVFHPELGSL*FPREPFSKSYNVLY
Trigger: ATAAAGCACATTATAAGATTTGCTGAAGGGTTCTCTTGGAAACAAGAGTGACCCCAGCTCTGGATGGAACACATGAAGGGACATGAGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR TCA 90 bp CATTGTTCTGAGAGTGGTTTCAATGTATTCCTGCCACAAAGACAAAAATCACCGCTTCCTGGGAGTCCCTaGAGCAGAAGAGTTGTCATA +
Preference number: 2 (lower is better)
Translates to: HCSESGFNVFLPQRQKSPLPGSP*SRRVVI
Trigger: TATGACAACTCTTCTGCTTCAGGGACTCCCAGGAAG...CGGTGATTTTTGTCTTTGTGGCAGGAATACATTGAAACCACTCTCAGAACAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR GCA 90 bp AGAGGCACACTCTTTCCACTTCTATCTGGAGGCTGCCAGTTTTCCCTAGCCTTGGTTTCAATGTATTCCTaGCACAAAGACAAAAATCAC +
Preference number: 2 (lower is better)
Translates to: RGTLFPLLSGGCQFSLALVSMYS*HKDKNH
Trigger: GTGATTTTTGTCTTTGTGGCAGGAATACATTGAAAC...CAAGGCTAGGGAAAACTGGCAGCCTCCAGATAGAAGTGGAAAGAGTGTGCCTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CCA 90 bp GTATCATTAGAGAACACAAACGTTCGTTCCGCTGCAATCGAAGGGGACAGAGGCAAGAAAACCCTTGGTTaGGACAATCAGAATCAACAA +
Preference number: 2 (lower is better)
Translates to: VSLENTNVRSAAIEGDRGKKTLG*DNQNQQ
Trigger: TTGTTGATTCTGATTGTCCCAACCAAGGGTTTTCTT...GCCTCTGTCCCCTTCGATTGCAGCGGAACGAACGTTTGTGTTCTCTAATGATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CCA 90 bp GACAGATCCCATGCAAAACCCTTGACTCAAACGATCCTCGCAATGAACATTCATCTATGTCACCAAAGATaGCACAAGATCCTAGAAGAG +
Preference number: 2 (lower is better)
Translates to: DRSHAKPLTQTILAMNIHLCHQR*HKILEE
Trigger: CTCTTCTAGGATCTTGTGCCATCTTTGGTGACATAG...ATGAATGTTCATTGCGAGGATCGTTTGAGTCAAGGGTTTTGCATGGGATCTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR-3UTR CCA 90 bp GAAATATGCTTTCTGGAATTTCTACTCATGTCACGTGCCTTTGTGTATGGGAAGGACCTTATGGACAACTaGGAACTGTTCCAAGGAGAA +
Preference number: 2 (lower is better)
Translates to: EICFLEFLLMSRAFVYGKDLMDN*ELFQGE
Trigger: TTCTCCTTGGAACAGTTCCCAGTTGTCCATAAGGTC...CTTCCCATACACAAAGGCACGTGACATGAGTAGAAATTCCAGAAAGCATATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR-3UTR GCA 90 bp GGACAAGGACTTGCAAGGTCTCATAACTGGATTCAAGTTGAAACTAATAAAACCATTGTGTTTGCTGATTaGTTCGACCTCCAGTCTGAC +
Preference number: 2 (lower is better)
Translates to: GQGLARSHNWIQVETNKTIVFAD*FDLQSD
Trigger: GTCAGACTGGAGGTCGAAGCAATCAGCAAACACAAT...GGTTTTATTAGTTTCAACTTGAATCCAGTTATGAGACCTTGCAAGTCCTTGTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 90 bp ATAACATCCATGTGTCTACCATGTGACAGATCCCATGCAAAACCCTaGACTCAAACGATCCTCGCAATGAACATTCATTTATGCAAGAAA +
Preference number: 2 (lower is better)
Translates to: ITSMCLPCDRSHAKP*TQTILAMNIHLCKK
Trigger: TTTCTTGCATAAATGAATGTTCATTGCGAGGATCGTTTGAGTCAAGGGTTTTGCATGGGATCTGTCACATGGTAGACACATGGATGTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR-3UTR TCA 90 bp TTGAACAAACTTTTATTGGTTACCCATTTGTCTTGTTTCCTAGGGATGCCACATCAGCTTCCTCTCTCTTaGAATAACTTACTCCCTCTG +
Preference number: 2 (lower is better)
Translates to: LNKLLLVTHLSCFLGMPHQLPLS*NNLLPL
Trigger: CAGAGGGAGTAAGTTATTTCAAGAGAGAGGAAGCTG...ATGTGGCATCCCTAGGAAACAAGACAAATGGGTAACCAATAAAAGTTTGTTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR-3UTR CCA 90 bp TTGAACAAACTTTTATTGGTTACCCATTTGTCTTGTTTCCTAGGGATGCCACATCTAGAGGTAAGAAGATaGGCACAGGCAATAAATAAG +
Preference number: 2 (lower is better)
Translates to: LNKLLLVTHLSCFLGMPHLEVRR*AQAINK
Trigger: CTTATTTATTGCCTGTGCCCATCTTCTTACCTCTAG...ATGTGGCATCCCTAGGAAACAAGACAAATGGGTAACCAATAAAAGTTTGTTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR GCA 72 bp GGGGACTCTGGATCCCAAGAAGATGGGCCCAGGGCCTaGTTCACAGATCTACTCTACTGGGTTATGGTGCCC +
Preference number: 3 (lower is better)
Translates to: GDSGSQEDGPRA*FTDLLYWVMVP
Trigger: GGGCACCATAACCCAGTAGAGTAGATCTGTGAAGCAGGCCCTGGGCCCATCTTCTTGGGATCCAGAGTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 72 bp TGGCTACATGTTGAACCTTCAGGAGGCCTAATGAAGTaGTGGGTAGGTGGGCCTCTCAGCACAGCCACTGCC +
Preference number: 3 (lower is better)
Translates to: WLHVEPSGGLMK*WVGGPLSTATA
Trigger: GGCAGTGGCTGTGCTGAGAGGCCCACCTACCCAGCACTTCATTAGGCCTCCTGAAGGTTCAACATGTAGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 72 bp TCTCAGCACAGCCACTGCCTAGAGAGAAGCATTCTGTaGGGGTGGCACTGCTGTGGCCTGATCCACTCATGT +
Preference number: 3 (lower is better)
Translates to: SQHSHCLERSIL*GWHCCGLIHSC
Trigger: ACATGAGTGGATCAGGCCACAGCAGTGCCACCCTCACAGAATGCTTCTCTCTAGGCAGTGGCTGTGCTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 72 bp TGCAGCCTTGACCCAGGCTCCTCACTTTACCCACACTaGACACAGAATACGGGGACTCTGGATCCCAAGAAG +
Preference number: 3 (lower is better)
Translates to: CSLDPGSSLYPH*TQNTGTLDPKK
Trigger: CTTCTTGGGATCCAGAGTCCCCGTATTCTGTGTGCAGTGTGGGTAAAGTGAGGAGCCTGGGTCAAGGCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CAA 90 bp GTCATAGAGGGCAGGGACCGGGCGTCTATAACAGAGAGCAGGGGCCAGGGAAGAAGACTCTTATTGTGTTaGCTGATTGCTTCGACCTCC +
Preference number: 3 (lower is better)
Translates to: VIEGRDRASITESRGQGRRLLLC*LIASTS
Trigger: GGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCT...TCTTCCCTGGCCCCTGCTCTCTGTTATAGACGCCCGGTCCCTGCCCTCTATGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
3UTR TCA 72 bp TTGACCACAGAGATCTGGTGGCTGCCACATTGGAGGTaGCAGTGGGCATGGAGAACAGACTGCTGGCTACAT +
Preference number: 3 (lower is better)
Translates to: LTTEIWWLPHWR*QWAWRTDCWLH
Trigger: ATGTAGCCAGCAGTCTGTTCTCCATGCCCACTGTCACCTCCAATGTGGCAGCCACCAGATCTCTGTGGTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 72 bp GGGCCTGCTTCACAGATCTACTCTACTGGGTTATGGTaGCCTCCACAGCAGTGCTTTTCTGCCTGGAGAAAG +
Preference number: 3 (lower is better)
Translates to: GPASQIYSTGLW*PPQQCFSAWRK
Trigger: CTTTCTCCAGGCAGAAAAGCACTGCTGTGGAGGGCACCATAACCCAGTAGAGTAGATCTGTGAAGCAGGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CAA 90 bp AGAGGCACACTCTTTCCACTTCTATCTGGAGGCTGCCAGTTTTCCCTAGCCTTGTTTGGCACTGTGGGCTaGTCTCTCAGCCCTCAAGCT +
Preference number: 3 (lower is better)
Translates to: RGTLFPLLSGGCQFSLALFGTVG*SLSPQA
Trigger: AGCTTGAGGGCTGAGAGACAAGCCCACAGTGCCAAA...CAAGGCTAGGGAAAACTGGCAGCCTCCAGATAGAAGTGGAAAGAGTGTGCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 72 bp ACCCCGGGCATGCAAGAAAGCAGGGACATGAGGCCATaGGCTTTCTCGATGGTTTTGACATGGACTGAAGCA +
Preference number: 3 (lower is better)
Translates to: TPGMQESRDMRP*AFSMVLTWTEA
Trigger: TGCTTCAGTCCATGTCAAAACCATCGAGAAAGCTCATGGCCTCATGTCCCTGCTTTCTTGCATGCCCGGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 72 bp GTTAGTATCATTAGAGAACACAAACGTTCGTTCCGCTaGAATCGAAGGGGACAGAGGCCTGTGCTCGCACGG +
Preference number: 3 (lower is better)
Translates to: VSIIREHKRSFR*NRRGQRPVLAR
Trigger: CCGTGCGAGCACAGGCCTCTGTCCCCTTCGATTGCAGCGGAACGAACGTTTGTGTTCTCTAATGATACTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 72 bp CCTAGAGAGAAGCATTCTGTGAGGGTGGCACTGCTGTaGCCTGATCCACTCATGTCCCTTCATGTGTTCCAT +
Preference number: 3 (lower is better)
Translates to: PREKHSVRVALL*PDPLMSLHVFH
Trigger: ATGGAACACATGAAGGGACATGAGTGGATCAGGCCACAGCAGTGCCACCCTCACAGAATGCTTCTCTCTAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CAA 90 bp TTGGCACTGTGGGCTTGTCTCTCAGCCCTCAAGCTCTTGTACTTCTTCCTGGGACCTAGTGAGGTAAATTaGCCTCCTCAAACCACCAGC +
Preference number: 3 (lower is better)
Translates to: LALWACLSALKLLYFFLGPSEVN*PPQTTS
Trigger: GCTGGTGGTTTGAGGAGGCAAATTTACCTCACTAGG...TCCCAGGAAGAAGTACAAGAGCTTGAGGGCTGAGAGACAAGCCCACAGTGCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 72 bp GAGGCCATGAGCTTTCTCGATGGTTTTGACATGGACTaGAGCAAAGCAGAGCATGGAAGCAGCCTTCTCTCC +
Preference number: 3 (lower is better)
Translates to: EAMSFLDGFDMD*SKAEHGSSLLS
Trigger: GGAGAGAAGGCTGCTTCCATGCTCTGCTTTGCTTCAGTCCATGTCAAAACCATCGAGAAAGCTCATGGCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 72 bp CTTGTCTCTCAGCCCTCAAGCTCTTGTACTTCTTCCTaGGAGTCCCTGAAGCAGAAGAGTTGTCATAGGGAC +
Preference number: 3 (lower is better)
Translates to: LVSQPSSSCTSS*ESLKQKSCHRD
Trigger: GTCCCTATGACAACTCTTCTGCTTCAGGGACTCCCAGGAAGAAGTACAAGAGCTTGAGGGCTGAGAGACAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 72 bp AATACATGTGCAACCCCTCCCACAGTGACTGACATGTaGGAGATGCTATACCTGCAACCATGTTCTCTCCCC +
Preference number: 3 (lower is better)
Translates to: NTCATPPTVTDM*EMLYLQPCSLP
Trigger: GGGGAGAGAACATGGTTGCAGGTATAGCATCTCCCACATGTCAGTCACTGTGGGAGGGGTTGCACATGTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR TCA 72 bp GTTCTTGTGAGGATCAGTAGGTTCTTGACATATCACTaGTGCCCTGCGGACTGTACATCTGACTGGCTGCGA +
Preference number: 3 (lower is better)
Translates to: VLVRISRFLTYH*CPADCTSDWLR
Trigger: TCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGTGATATGTCAAGAACCTACTGATCCTCACAAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR GCA 72 bp AGAGAAGAGAAGGAGACTCTTATTGTGTTTGCTGATTaGTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGG +
Preference number: 3 (lower is better)
Translates to: REEKETLIVFAD*FDLQSDRFSVG
Trigger: CCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCTTCTCTTCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
3UTR GCA 72 bp TACTGGGTTATGGTGCCCTCCACAGCAGTGCTTTTCTaGCTGGAGAAAGATCCTGTCTTGTTGGAAGCATAC +
Preference number: 3 (lower is better)
Translates to: YWVMVPSTAVLF*LEKDPVLLEAY
Trigger: GTATGCTTCCAACAAGACAGGATCTTTCTCCAGGCAGAAAAGCACTGCTGTGGAGGGCACCATAACCCAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 72 bp ATCTACTCTACTGGGTTATGGTGCCCTCCACAGCAGTaGTTTTCTGCCTGGAGAAAGATCCTGTCTTGTTGG +
Preference number: 3 (lower is better)
Translates to: IYSTGLWCPPQQ*FSAWRKILSCW
Trigger: CCAACAAGACAGGATCTTTCTCCAGGCAGAAAAGCACTGCTGTGGAGGGCACCATAACCCAGTAGAGTAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 72 bp ATCCACTCATGTCCCTTCATGTGTTCCATCCAGAGCTaGGGTCACTCTTGTTTCCAAGAGAACCCTTCAGCA +
Preference number: 3 (lower is better)
Translates to: IHSCPFMCSIQS*GHSCFQENPSA
Trigger: TGCTGAAGGGTTCTCTTGGAAACAAGAGTGACCCCAGCTCTGGATGGAACACATGAAGGGACATGAGTGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 72 bp GGGTTATGGTGCCCTCCACAGCAGTGCTTTTCTGCCTaGAGAAAGATCCTGTCTTGTTGGAAGCATACTTGT +
Preference number: 3 (lower is better)
Translates to: GLWCPPQQCFSA*RKILSCWKHTC
Trigger: ACAAGTATGCTTCCAACAAGACAGGATCTTTCTCCAGGCAGAAAAGCACTGCTGTGGAGGGCACCATAACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CAA 90 bp TTGGCACTGTGGGCTTGTCTCTCAGCCCTCAAGCTCTTGTACTTCTTCCTGGGAAGAAGGAGACTCTTATaGTGTTTGCTGATTGCTTCG +
Preference number: 3 (lower is better)
Translates to: LALWACLSALKLLYFFLGRRRLL*CLLIAS
Trigger: CGAAGCAATCAGCAAACACAATAAGAGTCTCCTTCT...TCCCAGGAAGAAGTACAAGAGCTTGAGGGCTGAGAGACAAGCCCACAGTGCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 72 bp CCAGGTAGAGCACTATGCTTGCTAATGTACAGGATTTaGTTGCTGGGAGACCATCTGGGAGGTATCAGAGTG +
Preference number: 3 (lower is better)
Translates to: PGRALCLLMYRI*LLGDHLGGIRV
Trigger: CACTCTGATACCTCCCAGATGGTCTCCCAGCAATCAAATCCTGTACATTAGCAAGCATAGTGCTCTACCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 72 bp TTTAGAGGCACACTCTTTCCACTTCTATCTGGAGGCTaGCAGTTTTCCCTAGCCTTGCTTGACCACAGAGAT +
Preference number: 3 (lower is better)
Translates to: FRGTLFPLLSGG*QFSLALLDHRD
Trigger: ATCTCTGTGGTCAAGCAAGGCTAGGGAAAACTGGCAGCCTCCAGATAGAAGTGGAAAGAGTGTGCCTCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 72 bp CATGTCTCCTATTTATCACTGCATGTGGAATGTGTTTaGCACTGTGGGCTTGTCTCTCAGCCCTCAAGCTCT +
Preference number: 3 (lower is better)
Translates to: HVSYLSLHVECV*HCGLVSQPSSS
Trigger: AGAGCTTGAGGGCTGAGAGACAAGCCCACAGTGCCAAACACATTCCACATGCAGTGATAAATAGGAGACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CAA 90 bp TCCTGCCACAAAGACAAAAATCACCGGTTCTCATCACTACCACACACACACACAATAGGAGCTCTGCCTTaGCTGTTCTTTGTGCCCTTA +
Preference number: 3 (lower is better)
Translates to: SCHKDKNHRFSSLPHTHTIGALP*LFFVPL
Trigger: TAAGGGCACAAAGAACAGCAAAGGCAGAGCTCCTAT...TGTGTGTGTGTGTGGTAGTGATGAGAACCGGTGATTTTTGTCTTTGTGGCAGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CAA 90 bp TCTGTTGTATACATGACTTGCCCAACAGCCCAAGGCTTGAGGATGGAGCCAGGACTCAAGAGTGATTATTaGATTGCTGGATTAGTGGAG +
Preference number: 3 (lower is better)
Translates to: SVVYMTCPTAQGLRMEPGLKSDY*IAGLVE
Trigger: CTCCACTAATCCAGCAATCAAATAATCACTCTTGAG...TCCTGGCTCCATCCTCAAGCCTTGGGCTGTTGGGCAAGTCATGTATACAACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR TCA 72 bp ACACACACTTGTATTGTCCCTTCTAGGCACGCGTTCTaGGCATGGCAGAGGTTAGATGACAGTCTTTCTAGT +
Preference number: 3 (lower is better)
Translates to: THTCIVPSRHAF*AWQRLDDSLSS
Trigger: ACTAGAAAGACTGTCATCTAACCTCTGCCATGCTCAGAACGCGTGCCTAGAAGGGACAATACAAGTGTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 72 bp ATTAGACAAGGGGGAAATGCCCTATGTCACCAAAGATaGCACAAGATCCTAGAAGAGGGAAGCAACTTGCTC +
Preference number: 3 (lower is better)
Translates to: IRQGGNALCHQR*HKILEEGSNLL
Trigger: GAGCAAGTTGCTTCCCTCTTCTAGGATCTTGTGCCATCTTTGGTGACATAGGGCATTTCCCCCTTGTCTAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR-3UTR CAA 90 bp AGGAGACTCTTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAAAAGAAGTGTCCAGATaGGCTGAAATAGCATCCCAA +
Preference number: 3 (lower is better)
Translates to: RRLLLCLLIASTSSLTASKEVSR*AEIASQ
Trigger: TTGGGATGCTATTTCAGCCAATCTGGACACTTCTTT...TGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
3UTR-3UTR CAA 90 bp GGACAAGGACTTGCAAGGTCTCATAACTGGATTCAAGTTGAAACTAATAAAACCCATACTGCTCCTCTCTaGGGCTCACCAGGTAGAGCA +
Preference number: 3 (lower is better)
Translates to: GQGLARSHNWIQVETNKTHTAPL*GSPGRA
Trigger: TGCTCTACCTGGTGAGCCCAAGAGAGGAGCAGTATG...GGTTTTATTAGTTTCAACTTGAATCCAGTTATGAGACCTTGCAAGTCCTTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CAA 90 bp GAGCTCCACTACTCACGCTTGTCTTCTTTACATATCTGGTTGGAATTCTGTCTGCTCAGGGAGAGAGAATaGCTATTGTGGAAGACAGAG +
Preference number: 3 (lower is better)
Translates to: ELHYSRLSSLHIWLEFCLLRERE*LLWKTE
Trigger: CTCTGTCTTCCACAATAGCAATTCTCTCTCCCTGAG...CAGACAGAATTCCAACCAGATATGTAAAGAAGACAAGCGTGAGTAGTGGAGCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CAA 90 bp TCTGTTGTATACATGACTTGCCCAACAGCCCAAGGCTTGAGGATGGAGCCAGGAGGTAGAAGAAGACTTTaGTTTTCAGTCAAGAGAAGA +
Preference number: 3 (lower is better)
Translates to: SVVYMTCPTAQGLRMEPGGRRRL*FSVKRR
Trigger: TCTTCTCTTGACTGAAAACAAAAGTCTTCTTCTACC...TCCTGGCTCCATCCTCAAGCCTTGGGCTGTTGGGCAAGTCATGTATACAACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR TCA 72 bp GCTTCAGAGGTGGTAGGAATGAAGACAGTTTACTCTTaGATCCTGGCCCATGTTAATGAAGTCCTGCACATC +
Preference number: 3 (lower is better)
Translates to: ASEVVGMKTVYS*ILAHVNEVLHI
Trigger: GATGTGCAGGACTTCATTAACATGGGCCAGGATTCAAGAGTAAACTGTCTTCATTCCTACCACCTCTGAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 72 bp TATCTGACCACTTGCCACTTAATCTACTGGCAAAGCTaGCATCTTTATGGCTGGCAGAACCATCTGGAGAAT +
Preference number: 3 (lower is better)
Translates to: YLTTCHLIYWQS*HLYGWQNHLEN
Trigger: ATTCTCCAGATGGTTCTGCCAGCCATAAAGATGGCAGCTTTGCCAGTAGATTAAGTGGCAAGTGGTCAGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 72 bp AGGAAGTGCATGAGGCCCCAAAGATATCTGACCACTTaGCACTTAATCTACTGGCAAAGCTGCCATCTTTAT +
Preference number: 3 (lower is better)
Translates to: RKCMRPQRYLTT*HLIYWQSCHLY
Trigger: ATAAAGATGGCAGCTTTGCCAGTAGATTAAGTGGCAAGTGGTCAGATATCTTTGGGGCCTCATGCACTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 72 bp GTTTCTTGGGCCTCTTACAAGACCCTTGGTGAGCCATaGATAACAATTCCCATTTTACAGAGGAAGTGCATG +
Preference number: 3 (lower is better)
Translates to: VSWASYKTLGEP*ITIPILQRKCM
Trigger: CATGCACTTCCTCTGTAAAATGGGAATTGTTATCCATGGCTCACCAAGGGTCTTGTAAGAGGCCCAAGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 72 bp CATTATAGGGAGACTGCCTTCCCTGACCATCAGACCTaGAGATTAAATACAAGCAAGATCAGTTTCTTGGGC +
Preference number: 3 (lower is better)
Translates to: HYRETAFPDHQT*RLNTSKISFLG
Trigger: GCCCAAGAAACTGATCTTGCTTGTATTTAATCTCCAGGTCTGATGGTCAGGGAAGGCAGTCTCCCTATAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 72 bp CAAACAGACCAAAACCAAATCAGAGCAGAAAGCCTCTaGAACACTCTCATGATGGTGATGGCATCAAGGTAC +
Preference number: 3 (lower is better)
Translates to: QTDQNQIRAESL*NTLMMVMASRY
Trigger: GTACCTTGATGCCATCACCATCATGAGAGTGTTTCAGAGGCTTTCTGCTCTGATTTGGTTTTGGTCTGTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 72 bp TTCCAGGTATACAGGCCCAACTCCTCCAAACACACATaGAGCATGTCTCCTATTTATCACTGCATGTGGAAT +
Preference number: 3 (lower is better)
Translates to: FQVYRPNSSKHT*SMSPIYHCMWN
Trigger: ATTCCACATGCAGTGATAAATAGGAGACATGCTTCATGTGTGTTTGGAGGAGTTGGGCCTGTATACCTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 72 bp GTTACTAGCATCCTGCCAAGCAAAACTATAAGGTTGTaGATGTGTCCACCTGTGTGTTACCTATGTGTGTGT +
Preference number: 3 (lower is better)
Translates to: VTSILPSKTIRL*MCPPVCYLCVC
Trigger: ACACACACATAGGTAACACACAGGTGGACACATGCACAACCTTATAGTTTTGCTTGGCAGGATGCTAGTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 72 bp AGGCTTGAGGATGGAGCCAGGATTCAAACTTGGGCCTaGTTTATTGTAGACCTTGTTATTACCATAGAGATG +
Preference number: 3 (lower is better)
Translates to: RLEDGARIQTWA*FIVDLVITIEM
Trigger: CATCTCTATGGTAATAACAAGGTCTACAATAAAGCAGGCCCAAGTTTGAATCCTGGCTCCATCCTCAAGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR GCA 72 bp TGCCTTTGTGTATGGGAAGGGAAGGTAACTCTGCCTTaGAAGCCTTTCTCCTTATTTCTGTCACAAAGACTT +
Preference number: 3 (lower is better)
Translates to: CLCVWEGKVTLP*KPFSLFLSQRL
Trigger: AAGTCTTTGTGACAGAAATAAGGAGAAAGGCTTGCAAGGCAGAGTTACCTTCCCTTCCCATACACAAAGGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR CCA 72 bp CTGCTACCATCTCTCAGGGAGAGAGAATTGCTATTGTaGAAGACAGAGAACTCCCACTTGTACTTAAAGACT +
Preference number: 3 (lower is better)
Translates to: LLPSLRERELLL*KTENSHLYLKT
Trigger: AGTCTTTAAGTACAAGTGGGAGTTCTCTGTCTTCCACAATAGCAATTCTCTCTCCCTGAGAGATGGTAGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CCA 72 bp CAGTGCTTTTCTGCCTGGAGAAAGATCCTGTCTTGTTaGAAGCATACTTGTGGACTGTTGAAGTTAATCAGG +
Preference number: 3 (lower is better)
Translates to: QCFSAWRKILSC*KHTCGLLKLIR
Trigger: CCTGATTAACTTCAACAGTCCACAAGTATGCTTCCAACAAGACAGGATCTTTCTCCAGGCAGAAAAGCACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CAA 90 bp CATTGTTCTGAGAGTGGTTTCAATGTATTCCTGCCACAAAGACAAAAATCACCGCATAGGGACAAGGACTaGCAAGGTCTCATAACTGGA +
Preference number: 3 (lower is better)
Translates to: HCSESGFNVFLPQRQKSPHRDKD*QGLITG
Trigger: TCCAGTTATGAGACCTTGCAAGTCCTTGTCCCTATG...CGGTGATTTTTGTCTTTGTGGCAGGAATACATTGAAACCACTCTCAGAACAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 72 bp AAGATCAGTTTCTTGGGCCTCTTACAAGACCCTTGGTaGGCCATGGATAACAATTCCCATTTTACAGAGGAA +
Preference number: 3 (lower is better)
Translates to: KISFLGLLQDPW*AMDNNSHFTEE
Trigger: TTCCTCTGTAAAATGGGAATTGTTATCCATGGCTCACCAAGGGTCTTGTAAGAGGCCCAAGAAACTGATCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 72 bp CTTGCTCAGATGAACACACATAAATGGTGGCAGCACTaGGACTACCATGTGGTCATTTATAGTCCCTCATTT +
Preference number: 3 (lower is better)
Translates to: LAQMNTHKWWQH*DYHVVIYSPSF
Trigger: AAATGAGGGACTATAAATGACCACATGGTAGTCTCAGTGCTGCCACCATTTATGTGTGTTCATCTGAGCAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR GCA 72 bp AGAAATATGCTTTCTGGAATTTCTACTCATGTCACGTaGCTTTGTGTATGGGAAGGGAAGGTAACTCTGCCT +
Preference number: 3 (lower is better)
Translates to: RNMLSGISTHVT*LCVWEGKVTLP
Trigger: AGGCAGAGTTACCTTCCCTTCCCATACACAAAGGCACGTGACATGAGTAGAAATTCCAGAAAGCATATTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR CCA 72 bp CACTTAATCTACTGGCAAAGCTGCCATCTTTATGGCTaGCAGAACCATCTGGAGAATTTAAGCTCATGTCAA +
Preference number: 3 (lower is better)
Translates to: HLIYWQSCHLYG*QNHLENLSSCQ
Trigger: TTGACATGAGCTTAAATTCTCCAGATGGTTCTGCCAGCCATAAAGATGGCAGCTTTGCCAGTAGATTAAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR-3UTR CAA 90 bp GAAATATGCTTTCTGGAATTTCTACTCATGTCACGTGCCTTTGTGTATGGGAAGGAAGGTAACTCTGCCTaGCAAGCCTTTCTCCTTATT +
Preference number: 3 (lower is better)
Translates to: EICFLEFLLMSRAFVYGKEGNSA*QAFLLI
Trigger: AATAAGGAGAAAGGCTTGCAAGGCAGAGTTACCTTC...CTTCCCATACACAAAGGCACGTGACATGAGTAGAAATTCCAGAAAGCATATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR GCA 72 bp CCAACCATTGTTCTGAGAGTGGTTTCAATGTATTCCTaGCACAAAGACAAAAATCACCGGTTCTCATCACTA +
Preference number: 3 (lower is better)
Translates to: PTIVLRVVSMYS*HKDKNHRFSSL
Trigger: TAGTGATGAGAACCGGTGATTTTTGTCTTTGTGGCAGGAATACATTGAAACCACTCTCAGAACAATGGTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 72 bp GCTGGACAAATTTACATTTGCCAAACAATTCTGTTCTaGATTATCTTCAAATACTCAGTCCCCCAGGTTCCA +
Preference number: 3 (lower is better)
Translates to: AGQIYICQTILF*IIFKYSVPQVP
Trigger: TGGAACCTGGGGGACTGAGTATTTGAAGATAATGCAGAACAGAATTGTTTGGCAAATGTAAATTTGTCCAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR TCA 72 bp CCCTTCAGCAAATCTTATAATGTGCTTTATGGAAAATaGTGTGGTCCAACCATTGTTCTGAGAGTGGTTTCA +
Preference number: 3 (lower is better)
Translates to: PFSKSYNVLYGK*CGPTIVLRVVS
Trigger: TGAAACCACTCTCAGAACAATGGTTGGACCACATCATTTTCCATAAAGCACATTATAAGATTTGCTGAAGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 72 bp TGTTTCCAAGAGAACCCTTCAGCAAATCTTATAATGTaGTTTATGGAAAATGATGTGGTCCAACCATTGTTC +
Preference number: 3 (lower is better)
Translates to: CFQENPSANLIM*FMENDVVQPLF
Trigger: GAACAATGGTTGGACCACATCATTTTCCATAAAGCACATTATAAGATTTGCTGAAGGGTTCTCTTGGAAACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR GCA 72 bp AGCTTCAACTTTCAAAACCAAAGTAGAGCTGAGCTTTaGAGGTTTATACTCTCAATAATAAGGAGAAAAAGT +
Preference number: 3 (lower is better)
Translates to: SFNFQNQSRAEL*RFILSIIRRKS
Trigger: ACTTTTTCTCCTTATTATTGAGAGTATAAACCTGCAAAGCTCAGCTCTACTTTGGTTTTGAAAGTTGAAGCT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR GCA 90 bp GTCATAGAGGGCAGGGACCGGGCGTCTATAACAGAGAGCAGGGGCCAGGGAAGACCTCCGGCCCCATCCTaGAAGTGCTGGGACAGGCCG +
Preference number: 4 (lower is better)
Translates to: VIEGRDRASITESRGQGRPPAPS*KCWDRP
Trigger: CGGCCTGTCCCAGCACTTGCAGGATGGGGCCGGAGG...TCTTCCCTGGCCCCTGCTCTCTGTTATAGACGCCCGGTCCCTGCCCTCTATGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR GCA 90 bp GATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAACCCTCCCTCCTCCGGCCCCATCCTaGAAGTGCTGGGACAGGCCG +
Preference number: 4 (lower is better)
Translates to: DCFDLQSDRFSVGRETLPPPAPS*KCWDRP
Trigger: CGGCCTGTCCCAGCACTTGCAGGATGGGGCCGGAGG...AGGGAGGGTTTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR CCA 90 bp GCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAACCCTCCCTCCTGATCCCGACCCCAGCGTaGGAATGCATCAGCCTCGGC +
Preference number: 4 (lower is better)
Translates to: ASTSSLTASALGEKPSLLIPTPA*ECISLG
Trigger: GCCGAGGCTGATGCATTCCCACGCTGGGGTCGGGAT...CAGGAGGGAGGGTTTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR TCA 90 bp ACCTCCATTAGCACTGATGCCCTGCGGACTGTACATCTGACTGGCTGCGAGTCCTGTTGTCCAGTCGCATaGGCTGGGGGTCTGTGGGCT +
Preference number: 4 (lower is better)
Translates to: TSISTDALRTVHLTGCESCCPVA*AGGLWA
Trigger: AGCCCACAGACCCCCAGCTCATGCGACTGGACAACA...GGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGTGCTAATGGAGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176790.8
CDS-3UTR TCA 90 bp CTGCGGCACAGGGTCAGCCGGGATGCGATTGCTGGGAGATCAGTTGGAGGTATCTTGGCTTCCATGGGCTaGCACATTGGTGGCTGTGAC +
Preference number: 4 (lower is better)
Translates to: LRHRVSRDAIAGRSVGGILASMG*HIGGCD
Trigger: GTCACAGCCACCAATGTGTCAGCCCATGGAAGCCAA...GATACCTCCAACTGATCTCCCAGCAATCGCATCCCGGCTGACCCTGTGCCGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176790.8
CDS-3UTR CCA 90 bp GATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAACCCTCCCTTCCAGTCGCATGAGCTaGGGGTCTGTGGGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: DCFDLQSDRFSVGRETLPSSRMS*GSVGSS
Trigger: AGAGGAGCCCACAGACCCCCAGCTCATGCGACTGGA...AGGGAGGGTTTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR TCA 90 bp GCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAACCCTCCCTCCTGCTGTGGCTTGCTTGTTaGAATTCCGTCTCTTCCGCC +
Preference number: 4 (lower is better)
Translates to: ASTSSLTASALGEKPSLLLWLAC*NSVSSA
Trigger: GGCGGAAGAGACGGAATTTCAACAAGCAAGCCACAG...CAGGAGGGAGGGTTTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR TCA 90 bp TTGGCACTGTGGGCTTGTCTCTCAGCCCTCAAGCTCTTGTACTTCTTCCTGGGATGTTGTCCAGTCGCATaGGCTGGGGGTCTGTGGGCT +
Preference number: 4 (lower is better)
Translates to: LALWACLSALKLLYFFLGCCPVA*AGGLWA
Trigger: AGCCCACAGACCCCCAGCTCATGCGACTGGACAACA...TCCCAGGAAGAAGTACAAGAGCTTGAGGGCTGAGAGACAAGCCCACAGTGCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR GCA 90 bp CTGCGGCACAGGGTCAGCCGGGATGCGATTGCTGGGAGATCAGTTGGAGGTATCGCATGTTTTCTGGCCTaGGCTTCATCCAAACTCTGG +
Preference number: 4 (lower is better)
Translates to: LRHRVSRDAIAGRSVGGIACFLA*ASSKLW
Trigger: CCAGAGTTTGGATGAAGCGCAGGCCAGAAAACATGC...GATACCTCCAACTGATCTCCCAGCAATCGCATCCCGGCTGACCCTGTGCCGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176790.8
CDS-3UTR GCA 90 bp TCCTTCAGTGAAGTCATAGAGGGCAGGGACCGGGCGTCTATAACAGAGAGCAGGGGCCTGGTCCGGCTTTaGTCTCGAAGGAGGTTCATC +
Preference number: 4 (lower is better)
Translates to: SFSEVIEGRDRASITESRGLVRL*SRRRFI
Trigger: GATGAACCTCCTTCGAGAGCAAAGCCGGACCAGGCC...CCTGCTCTCTGTTATAGACGCCCGGTCCCTGCCCTCTATGACTTCACTGAAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
3UTR CAA 72 bp GCCTTGCTTGACCACAGAGATCTGGTGGCTGCCACATaGGAGGTGACAGTGGGCATGGAGAACAGACTGCTG +
Preference number: 4 (lower is better)
Translates to: ALLDHRDLVAAT*EVTVGMENRLL
Trigger: CAGCAGTCTGTTCTCCATGCCCACTGTCACCTCCAATGTGGCAGCCACCAGATCTCTGTGGTCAAGCAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR TCA 90 bp GATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAACCCTCCCTCTGTGGCTTGCTTGTTaGAATTCCGTCTCTTCCGCC +
Preference number: 4 (lower is better)
Translates to: DCFDLQSDRFSVGRETLPLWLAC*NSVSSA
Trigger: GGCGGAAGAGACGGAATTTCAACAAGCAAGCCACAG...AGGGAGGGTTTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR TCA 90 bp GATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAACCCTCCCTACACATTGGTGGCTGTaGCAGCCGTTTTGGCAGCAT +
Preference number: 4 (lower is better)
Translates to: DCFDLQSDRFSVGRETLPTHWWL*QPFWQH
Trigger: ATGCTGCCAAAACGGCTGTCACAGCCACCAATGTGT...AGGGAGGGTTTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR TCA 90 bp TGGCACTGTGGGCTTGTCTCTCAGCCCTCAAGCTCTTGTACTTCTTCCTGGGAGTTGGCTTCCATGGGCTaGCACATTGGTGGCTGTGAC +
Preference number: 4 (lower is better)
Translates to: WHCGLVSQPSSSCTSSWELASMG*HIGGCD
Trigger: GTCACAGCCACCAATGTGTCAGCCCATGGAAGCCAA...CTCCCAGGAAGAAGTACAAGAGCTTGAGGGCTGAGAGACAAGCCCACAGTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR GCA 90 bp AATCATCTGGTTACAACATCTGCTAGCTCCCTGCTCACCAGCCTTGTTTTGTCTCCTCCGGCCCCATCCTaGAAGTGCTGGGACAGGCCG +
Preference number: 4 (lower is better)
Translates to: NHLVTTSASSLLTSLVLSPPAPS*KCWDRP
Trigger: CGGCCTGTCCCAGCACTTGCAGGATGGGGCCGGAGG...AGACAAAACAAGGCTGGTGAGCAGGGAGCTAGCAGATGTTGTAACCAGATGATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CCA 90 bp TCTGTTGTATACATGACTTGCCCAACAGCCCAAGGCTTGAGGATGGAGCCAGGATCCAGTCGCATGAGCTaGGGGTCTGTGGGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: SVVYMTCPTAQGLRMEPGSSRMS*GSVGSS
Trigger: AGAGGAGCCCACAGACCCCCAGCTCATGCGACTGGA...TCCTGGCTCCATCCTCAAGCCTTGGGCTGTTGGGCAAGTCATGTATACAACAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CCA 90 bp GTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAATCGGAGAGATGGGCCTaGTCCGGCTTTGCTCTCGAA +
Preference number: 4 (lower is better)
Translates to: VFADCFDLQSDRFSVGRESERWA*SGFALE
Trigger: TTCGAGAGCAAAGCCGGACCAGGCCCATCTCTCCGA...TTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR CCA 90 bp GTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAATCTCCTTCGGAGAGATaGGCCTGGTCCGGCTTTGCT +
Preference number: 4 (lower is better)
Translates to: VFADCFDLQSDRFSVGRESPSER*AWSGFA
Trigger: AGCAAAGCCGGACCAGGCCCATCTCTCCGAAGGAGA...TTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR CCA 90 bp TCCTTCAGTGAAGTCATAGAGGGCAGGGACCGGGCGTCTATAACAGAGAGCAGGGAGGGCGAGTTAGCTTaGCTTCCATGGGCTGACACA +
Preference number: 4 (lower is better)
Translates to: SFSEVIEGRDRASITESREGELA*LPWADT
Trigger: TGTGTCAGCCCATGGAAGCCAAGCTAACTCGCCCTC...CCTGCTCTCTGTTATAGACGCCCGGTCCCTGCCCTCTATGACTTCACTGAAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR GCA 90 bp TCTGTTGTATACATGACTTGCCCAACAGCCCAAGGCTTGAGGATGGAGCCAGGAGGCCTGGTCCGGCTTTaGTCTCGAAGGAGGTTCATC +
Preference number: 4 (lower is better)
Translates to: SVVYMTCPTAQGLRMEPGGLVRL*SRRRFI
Trigger: GATGAACCTCCTTCGAGAGCAAAGCCGGACCAGGCC...TCCTGGCTCCATCCTCAAGCCTTGGGCTGTTGGGCAAGTCATGTATACAACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CCA 90 bp CCATGTGACAGATCCCATGCAAAACCCTTGACTCAAACGATCCTCGCAATGAACATCCCGACCCCAGCGTaGGAATGCATCAGCCTCGGC +
Preference number: 4 (lower is better)
Translates to: PCDRSHAKPLTQTILAMNIPTPA*ECISLG
Trigger: GCCGAGGCTGATGCATTCCCACGCTGGGGTCGGGAT...GTTCATTGCGAGGATCGTTTGAGTCAAGGGTTTTGCATGGGATCTGTCACATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CCA 90 bp CTGCGGCACAGGGTCAGCCGGGATGCGATTGCTGGGAGATCAGTTGGAGGTATCAGGAGGTTCATCACGTaGGTGGTGAATTCATTGCAT +
Preference number: 4 (lower is better)
Translates to: LRHRVSRDAIAGRSVGGIRRFIT*VVNSLH
Trigger: ATGCAATGAATTCACCACCCACGTGATGAACCTCCT...GATACCTCCAACTGATCTCCCAGCAATCGCATCCCGGCTGACCCTGTGCCGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176790.8
CDS-3UTR CCA 90 bp ACCTCCATTAGCACTGATGCCCTGCGGACTGTACATCTGACTGGCTGCGAGTCCAACCAGTTTGATACCTaGGAGACTGTGATGCCGCAC +
Preference number: 4 (lower is better)
Translates to: TSISTDALRTVHLTGCESNQFDT*ETVMPH
Trigger: GTGCGGCATCACAGTCTCCCAGGTATCAAACTGGTT...GGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGTGCTAATGGAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176790.8
CDS-3UTR TCA 90 bp GTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAACACATTGGTGGCTGTaGCAGCCGTTTTGGCAGCAT +
Preference number: 4 (lower is better)
Translates to: VFADCFDLQSDRFSVGRETHWWL*QPFWQH
Trigger: ATGCTGCCAAAACGGCTGTCACAGCCACCAATGTGT...TTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR TCA 90 bp TTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGATGCGGACTGTACATCTaGCTGGCTGCGAGTCCGTCA +
Preference number: 4 (lower is better)
Translates to: LLCLLIASTSSLTASALGCGLYI*LAASPS
Trigger: TGACGGACTCGCAGCCAGTCAGATGTACAGTCCGCA...TCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR GCA 90 bp TTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGGCCTGGTCCGGCTTTaGTCTCGAAGGAGGTTCATC +
Preference number: 4 (lower is better)
Translates to: LLCLLIASTSSLTASALGGLVRL*SRRRFI
Trigger: GATGAACCTCCTTCGAGAGCAAAGCCGGACCAGGCC...TCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR GCA 90 bp GTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAGTATCCACCTGTGATTaGACGTTGGCTCCAACCTGG +
Preference number: 4 (lower is better)
Translates to: VFADCFDLQSDRFSVGREVSTCD*TLAPTW
Trigger: CCAGGTTGGAGCCAACGTGCAATCACAGGTGGATAC...TTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR CCA 90 bp AGGGCTCCTAGTGAGGTAAATTTGCCTCCTCAAACCACCAGCATGAAAACATACATCCCGACCCCAGCGTaGGAATGCATCAGCCTCGGC +
Preference number: 4 (lower is better)
Translates to: RAPSEVNLPPQTTSMKTYIPTPA*ECISLG
Trigger: GCCGAGGCTGATGCATTCCCACGCTGGGGTCGGGAT...GTATGTTTTCATGCTGGTGGTTTGAGGAGGCAAATTTACCTCACTAGGAGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR CCA 90 bp TTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGATCTCCTTCGGAGAGATaGGCCTGGTCCGGCTTTGCT +
Preference number: 4 (lower is better)
Translates to: LLCLLIASTSSLTASALGSPSER*AWSGFA
Trigger: AGCAAAGCCGGACCAGGCCCATCTCTCCGAAGGAGA...TCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR CCA 90 bp TGGCACTGTGGGCTTGTCTCTCAGCCCTCAAGCTCTTGTACTTCTTCCTGGGAGTTAGCTTGGCTTCCATaGGCTGACACATTGGTGGCT +
Preference number: 4 (lower is better)
Translates to: WHCGLVSQPSSSCTSSWELAWLP*ADTLVA
Trigger: AGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAA...CTCCCAGGAAGAAGTACAAGAGCTTGAGGGCTGAGAGACAAGCCCACAGTGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR CCA 90 bp TCCTTCAGTGAAGTCATAGAGGGCAGGGACCGGGCGTCTATAACAGAGAGCAGGTTAGCTTGGCTTCCATaGGCTGACACATTGGTGGCT +
Preference number: 4 (lower is better)
Translates to: SFSEVIEGRDRASITESRLAWLP*ADTLVA
Trigger: AGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAA...CCTGCTCTCTGTTATAGACGCCCGGTCCCTGCCCTCTATGACTTCACTGAAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR GCA 90 bp TGTCTCTCAGCCCTCAAGCTCTTGTACTTCTTCCTGGGAGTCCCTGAAGCAGAAGGGGTAGTAGCATCCTaGCAACCTCCATTAGCACTG +
Preference number: 4 (lower is better)
Translates to: CLSALKLLYFFLGVPEAEGVVAS*QPPLAL
Trigger: CAGTGCTAATGGAGGTTGGCAGGATGCTACTACCCC...TTCTGCTTCAGGGACTCCCAGGAAGAAGTACAAGAGCTTGAGGGCTGAGAGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR CCA 90 bp TCCTGCCACAAAGACAAAAATCACCGGTTCTCATCACTACCACACACACACACATCCAGTCGCATGAGCTaGGGGTCTGTGGGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: SCHKDKNHRFSSLPHTHTSSRMS*GSVGSS
Trigger: AGAGGAGCCCACAGACCCCCAGCTCATGCGACTGGA...TGTGTGTGTGTGTGGTAGTGATGAGAACCGGTGATTTTTGTCTTTGTGGCAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR CCA 90 bp ACAACATCTGCTAGCTCCCTGCTCACCAGCCTTGTTTTGTCTGATACAAGTGGCGAGGGCGAGTTAGCTTaGCTTCCATGGGCTGACACA +
Preference number: 4 (lower is better)
Translates to: TTSASSLLTSLVLSDTSGEGELA*LPWADT
Trigger: TGTGTCAGCCCATGGAAGCCAAGCTAACTCGCCCTC...GCCACTTGTATCAGACAAAACAAGGCTGGTGAGCAGGGAGCTAGCAGATGTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR TCA 90 bp ACCTCCATTAGCACTGATGCCCTGCGGACTGTACATCTGACTGGCTGCGAGTCCATTTCCAAACCAGTTTaGTACCTGGGAGACTGTGAT +
Preference number: 4 (lower is better)
Translates to: TSISTDALRTVHLTGCESISKPV*YLGDCD
Trigger: ATCACAGTCTCCCAGGTATCAAACTGGTTTGGAAAT...GGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGTGCTAATGGAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176790.8
CDS-3UTR TCA 90 bp GTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAGTGACTGCACGCTCATaGACAAATCTCCAGAGTTTG +
Preference number: 4 (lower is better)
Translates to: VFADCFDLQSDRFSVGREVTARS*TNLQSL
Trigger: CAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCAC...TTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR GCA 90 bp TGTCTCTCAGCCCTCAAGCTCTTGTACTTCTTCCTGGGAGTCCCTGAAGCAGAAGCATGTTTTCTGGCCTaGGCTTCATCCAAACTCTGG +
Preference number: 4 (lower is better)
Translates to: CLSALKLLYFFLGVPEAEACFLA*ASSKLW
Trigger: CCAGAGTTTGGATGAAGCGCAGGCCAGAAAACATGC...TTCTGCTTCAGGGACTCCCAGGAAGAAGTACAAGAGCTTGAGGGCTGAGAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR GCA 90 bp GATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAACCCTCCCTAATTCATTGCATGCCTaGTCATACTTCTCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: DCFDLQSDRFSVGRETLPNSLHA*SYFSSS
Trigger: AGAGCTGGAGAAGTATGAGCAGGCATGCAATGAATT...AGGGAGGGTTTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR CCA 90 bp TCCTGCCACAAAGACAAAAATCACCGGTTCTCATCACTACCACACACACACACATCGGAGAGATGGGCCTaGTCCGGCTTTGCTCTCGAA +
Preference number: 4 (lower is better)
Translates to: SCHKDKNHRFSSLPHTHTSERWA*SGFALE
Trigger: TTCGAGAGCAAAGCCGGACCAGGCCCATCTCTCCGA...TGTGTGTGTGTGTGGTAGTGATGAGAACCGGTGATTTTTGTCTTTGTGGCAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR CCA 90 bp GACATTAGACAAGGGGGAAATGCCCTATGTCACCAAAGATGGCACAAGATCCTATCGGAGAGATGGGCCTaGTCCGGCTTTGCTCTCGAA +
Preference number: 4 (lower is better)
Translates to: DIRQGGNALCHQRWHKILSERWA*SGFALE
Trigger: TTCGAGAGCAAAGCCGGACCAGGCCCATCTCTCCGA...TAGGATCTTGTGCCATCTTTGGTGACATAGGGCATTTCCCCCTTGTCTAATGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CCA 90 bp AGAGGCACACTCTTTCCACTTCTATCTGGAGGCTGCCAGTTTTCCCTAGCCTTGAACCAGTTTGATACCTaGGAGACTGTGATGCCGCAC +
Preference number: 4 (lower is better)
Translates to: RGTLFPLLSGGCQFSLALNQFDT*ETVMPH
Trigger: GTGCGGCATCACAGTCTCCCAGGTATCAAACTGGTT...CAAGGCTAGGGAAAACTGGCAGCCTCCAGATAGAAGTGGAAAGAGTGTGCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR CCA 90 bp GTATCATTAGAGAACACAAACGTTCGTTCCGCTGCAATCGAAGGGGACAGAGGCGACTGTACATCTGACTaGCTGCGAGTCCGTCACTGT +
Preference number: 4 (lower is better)
Translates to: VSLENTNVRSAAIEGDRGDCTSD*LRVRHC
Trigger: ACAGTGACGGACTCGCAGCCAGTCAGATGTACAGTC...GCCTCTGTCCCCTTCGATTGCAGCGGAACGAACGTTTGTGTTCTCTAATGATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 72 bp TCTGTTGTATACATGACTTGCCCAACAGCCCAAGGCTaGAGGATGGAGCCAGGATTCAAACTTGGGCCTGCT +
Preference number: 4 (lower is better)
Translates to: SVVYMTCPTAQG*RMEPGFKLGPA
Trigger: AGCAGGCCCAAGTTTGAATCCTGGCTCCATCCTCAAGCCTTGGGCTGTTGGGCAAGTCATGTATACAACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR TCA 90 bp TGCCCTATGTCACCAAAGATGGCACAAGATCCTAGAAGAGGGAAGCAACTTGCTCTGTGGCTTGCTTGTTaGAATTCCGTCTCTTCCGCC +
Preference number: 4 (lower is better)
Translates to: CPMSPKMAQDPRRGKQLALWLAC*NSVSSA
Trigger: GGCGGAAGAGACGGAATTTCAACAAGCAAGCCACAG...AGCAAGTTGCTTCCCTCTTCTAGGATCTTGTGCCATCTTTGGTGACATAGGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR GCA 90 bp GTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAGGTGAATTCATTGCATaGCTGCTCATACTTCTCCAG +
Preference number: 4 (lower is better)
Translates to: VFADCFDLQSDRFSVGREGEFIA*LLILLQ
Trigger: CTGGAGAAGTATGAGCAGGCATGCAATGAATTCACC...TTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR GCA 90 bp AGGAGACTCTTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGTACATCTGACTGGCTaGGAGTCCGTCACTGTATCC +
Preference number: 4 (lower is better)
Translates to: RRLLLCLLIASTSSLTASVHLTG*ESVTVS
Trigger: GGATACAGTGACGGACTCGCAGCCAGTCAGATGTAC...TGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR GCA 90 bp GTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAATCCCCATTGAGTGACTaGACGCTCATGAACAAATCT +
Preference number: 4 (lower is better)
Translates to: VFADCFDLQSDRFSVGRESPLSD*TLMNKS
Trigger: AGATTTGTTCATGAGCGTGCAGTCACTCAATGGGGA...TTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR CCA 90 bp GTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAAGGAGGTTCATCACGTaGGTGGTGAATTCATTGCAT +
Preference number: 4 (lower is better)
Translates to: VFADCFDLQSDRFSVGRERRFIT*VVNSLH
Trigger: ATGCAATGAATTCACCACCCACGTGATGAACCTCCT...TTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR CCA 90 bp GTATCATTAGAGAACACAAACGTTCGTTCCGCTGCAATCGAAGGGGACAGAGGCCTGTATCCTCCTGTCTaGCTGATAACATGGCGAAGG +
Preference number: 4 (lower is better)
Translates to: VSLENTNVRSAAIEGDRGLYPPV*LITWRR
Trigger: CCTTCGCCATGTTATCAGCCAGACAGGAGGATACAG...GCCTCTGTCCCCTTCGATTGCAGCGGAACGAACGTTTGTGTTCTCTAATGATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 72 bp GCATGTCTCCTATTTATCACTGCATGTGGAATGTGTTaGGCACTGTGGGCTTGTCTCTCAGCCCTCAAGCTC +
Preference number: 4 (lower is better)
Translates to: ACLLFITACGMC*ALWACLSALKL
Trigger: GAGCTTGAGGGCTGAGAGACAAGCCCACAGTGCCAAACACATTCCACATGCAGTGATAAATAGGAGACATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 72 bp CCCCAAGGTCTGCTACCATCTCTCAGGGAGAGAGAATaGCTATTGTGGAAGACAGAGAACTCCCACTTGTAC +
Preference number: 4 (lower is better)
Translates to: PQGLLPSLRERE*LLWKTENSHLY
Trigger: GTACAAGTGGGAGTTCTCTGTCTTCCACAATAGCAATTCTCTCTCCCTGAGAGATGGTAGCAGACCTTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 72 bp ACAACATCTGCTAGCTCCCTGCTCACCAGCCTTGTTTaGTCTGATACAAGTGGCCAGCAGATATCCTCTGAC +
Preference number: 4 (lower is better)
Translates to: TTSASSLLTSLV*SDTSGQQISSD
Trigger: GTCAGAGGATATCTGCTGGCCACTTGTATCAGACAAAACAAGGCTGGTGAGCAGGGAGCTAGCAGATGTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR TCA 90 bp AGGAGACTCTTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCATCATCACGTGGGTGGTaGATTCATTGCATGCCTGCT +
Preference number: 4 (lower is better)
Translates to: RRLLLCLLIASTSSLTASSSRGW*IHCMPA
Trigger: AGCAGGCATGCAATGAATTCACCACCCACGTGATGA...TGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR TCA 90 bp AATCATCTGGTTACAACATCTGCTAGCTCCCTGCTCACCAGCCTTGTTTTGTCTACACATTGGTGGCTGTaGCAGCCGTTTTGGCAGCAT +
Preference number: 4 (lower is better)
Translates to: NHLVTTSASSLLTSLVLSTHWWL*QPFWQH
Trigger: ATGCTGCCAAAACGGCTGTCACAGCCACCAATGTGT...AGACAAAACAAGGCTGGTGAGCAGGGAGCTAGCAGATGTTGTAACCAGATGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR TCA 90 bp GACAGATCCCATGCAAAACCCTTGACTCAAACGATCCTCGCAATGAACATTCATTTGGCTTCCATGGGCTaGCACATTGGTGGCTGTGAC +
Preference number: 4 (lower is better)
Translates to: DRSHAKPLTQTILAMNIHLASMG*HIGGCD
Trigger: GTCACAGCCACCAATGTGTCAGCCCATGGAAGCCAA...ATGAATGTTCATTGCGAGGATCGTTTGAGTCAAGGGTTTTGCATGGGATCTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR TCA 90 bp AGGGCTCCTAGTGAGGTAAATTTGCCTCCTCAAACCACCAGCATGAAAACATACAAGGGTATCCACCTGTaGTTGCACGTTGGCTCCAAC +
Preference number: 4 (lower is better)
Translates to: RAPSEVNLPPQTTSMKTYKGIHL*LHVGSN
Trigger: GTTGGAGCCAACGTGCAATCACAGGTGGATACCCTT...GTATGTTTTCATGCTGGTGGTTTGAGGAGGCAAATTTACCTCACTAGGAGCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR CCA 90 bp AGGAGACTCTTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCACTGTATCCTCCTGTCTaGCTGATAACATGGCGAAGG +
Preference number: 4 (lower is better)
Translates to: RRLLLCLLIASTSSLTASLYPPV*LITWRR
Trigger: CCTTCGCCATGTTATCAGCCAGACAGGAGGATACAG...TGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
3UTR CAA 72 bp GACTTCCTGCCTAGGACTCAACCTGATGGAACTACATaGGGATATGTGGCACCTTTAGAAGCCCAGTTATGG +
Preference number: 4 (lower is better)
Translates to: DFLPRTQPDGTT*GYVAPLEAQLW
Trigger: CCATAACTGGGCTTCTAAAGGTGCCACATATCCCAATGTAGTTCCATCAGGTTGAGTCCTAGGCAGGAAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 72 bp TCTAAGAGGATGAGAAAGCTGATAGGAGCTCTGCCTTaGCTGTTCTTTGTGCCCTTACCTGCCAGACTTCCT +
Preference number: 4 (lower is better)
Translates to: SKRMRKLIGALP*LFFVPLPARLP
Trigger: AGGAAGTCTGGCAGGTAAGGGCACAAAGAACAGCAAAGGCAGAGCTCCTATCAGCTTTCTCATCCTCTTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 72 bp TATCACTGCATGTGGAATGTGTTTGGCACTGTGGGCTaGTCTCTCAGCCCTCAAGCTCTTGTACTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: YHCMWNVFGTVG*SLSPQALVLLP
Trigger: AGGAAGAAGTACAAGAGCTTGAGGGCTGAGAGACAAGCCCACAGTGCCAAACACATTCCACATGCAGTGATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 72 bp TGGTTACAACATCTGCTAGCTCCCTGCTCACCAGCCTaGTTTTGTCTGATACAAGTGGCCAGCAGATATCCT +
Preference number: 4 (lower is better)
Translates to: WLQHLLAPCSPA*FCLIQVASRYP
Trigger: AGGATATCTGCTGGCCACTTGTATCAGACAAAACAAGGCTGGTGAGCAGGGAGCTAGCAGATGTTGTAACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR TCA 90 bp TTTATCTTCTGGCTAGAACTAGTTTCCAAACCAATCAATGGGCCAGATAAAACATGTTGTCCAGTCGCATaGGCTGGGGGTCTGTGGGCT +
Preference number: 4 (lower is better)
Translates to: FIFWLELVSKPINGPDKTCCPVA*AGGLWA
Trigger: AGCCCACAGACCCCCAGCTCATGCGACTGGACAACA...TGTTTTATCTGGCCCATTGATTGGTTTGGAAACTAGTTCTAGCCAGAAGATAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CCA 90 bp TTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGATTAAAGCATGTTTTCTaGCCTGCGCTTCATCCAAAC +
Preference number: 4 (lower is better)
Translates to: LLCLLIASTSSLTASALGLKHVF*PALHPN
Trigger: GTTTGGATGAAGCGCAGGCCAGAAAACATGCTTTAA...TCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR CCA 90 bp GGAAATGCCCTATGTCACCAAAGATGGCACAAGATCCTAGAAGAGGGAAGCAACAGGAGGTTCATCACGTaGGTGGTGAATTCATTGCAT +
Preference number: 4 (lower is better)
Translates to: GNALCHQRWHKILEEGSNRRFIT*VVNSLH
Trigger: ATGCAATGAATTCACCACCCACGTGATGAACCTCCT...GTTGCTTCCCTCTTCTAGGATCTTGTGCCATCTTTGGTGACATAGGGCATTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CCA 90 bp GACAGATCCCATGCAAAACCCTTGACTCAAACGATCCTCGCAATGAACATTCATAACCAGTTTGATACCTaGGAGACTGTGATGCCGCAC +
Preference number: 4 (lower is better)
Translates to: DRSHAKPLTQTILAMNIHNQFDT*ETVMPH
Trigger: GTGCGGCATCACAGTCTCCCAGGTATCAAACTGGTT...ATGAATGTTCATTGCGAGGATCGTTTGAGTCAAGGGTTTTGCATGGGATCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CCA 90 bp GACAGATCCCATGCAAAACCCTTGACTCAAACGATCCTCGCAATGAACATTCATCTGTATCCTCCTGTCTaGCTGATAACATGGCGAAGG +
Preference number: 4 (lower is better)
Translates to: DRSHAKPLTQTILAMNIHLYPPV*LITWRR
Trigger: CCTTCGCCATGTTATCAGCCAGACAGGAGGATACAG...ATGAATGTTCATTGCGAGGATCGTTTGAGTCAAGGGTTTTGCATGGGATCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR CAA 72 bp GAGGAAGTGCATGAGGCCCCAAAGATATCTGACCACTaGCCACTTAATCTACTGGCAAAGCTGCCATCTTTA +
Preference number: 4 (lower is better)
Translates to: EEVHEAPKISDH*PLNLLAKLPSL
Trigger: TAAAGATGGCAGCTTTGCCAGTAGATTAAGTGGCAAGTGGTCAGATATCTTTGGGGCCTCATGCACTTCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR TCA 90 bp TTTTCCCCTATGACCAATACAGACTTTCCGATGAAGCCCACCTGGCAATTTAAATCATCACGTGGGTGGTaGATTCATTGCATGCCTGCT +
Preference number: 4 (lower is better)
Translates to: FSPMTNTDFPMKPTWQFKSSRGW*IHCMPA
Trigger: AGCAGGCATGCAATGAATTCACCACCCACGTGATGA...TTTAAATTGCCAGGTGGGCTTCATCGGAAAGTCTGTATTGGTCATAGGGGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR GCA 90 bp GTACCAATCATCTGGTTACAACATCTGCTAGCTCCCTGCTCACCAGCCTTGTTTAATTCATTGCATGCCTaGTCATACTTCTCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: VPIIWLQHLLAPCSPALFNSLHA*SYFSSS
Trigger: AGAGCTGGAGAAGTATGAGCAGGCATGCAATGAATT...AAACAAGGCTGGTGAGCAGGGAGCTAGCAGATGTTGTAACCAGATGATTGGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CCA 90 bp TTGAACAAACTTTTATTGGTTACCCATTTGTCTTGTTTCCTAGGGATGCCACATTCTCCTTCGGAGAGATaGGCCTGGTCCGGCTTTGCT +
Preference number: 4 (lower is better)
Translates to: LNKLLLVTHLSCFLGMPHSPSER*AWSGFA
Trigger: AGCAAAGCCGGACCAGGCCCATCTCTCCGAAGGAGA...ATGTGGCATCCCTAGGAAACAAGACAAATGGGTAACCAATAAAAGTTTGTTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR TCA 90 bp TCCTGCCACAAAGACAAAAATCACCGGTTCTCATCACTACCACACACACACACAATTTCCAAACCAGTTTaGTACCTGGGAGACTGTGAT +
Preference number: 4 (lower is better)
Translates to: SCHKDKNHRFSSLPHTHTISKPV*YLGDCD
Trigger: ATCACAGTCTCCCAGGTATCAAACTGGTTTGGAAAT...TGTGTGTGTGTGTGGTAGTGATGAGAACCGGTGATTTTTGTCTTTGTGGCAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR GCA 90 bp TCCTGCCACAAAGACAAAAATCACCGGTTCTCATCACTACCACACACACACACAAATTCATTGCATGCCTaGTCATACTTCTCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: SCHKDKNHRFSSLPHTHTNSLHA*SYFSSS
Trigger: AGAGCTGGAGAAGTATGAGCAGGCATGCAATGAATT...TGTGTGTGTGTGTGGTAGTGATGAGAACCGGTGATTTTTGTCTTTGTGGCAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR GCA 90 bp GACAGATCCCATGCAAAACCCTTGACTCAAACGATCCTCGCAATGAACATTCATGGTGAATTCATTGCATaGCTGCTCATACTTCTCCAG +
Preference number: 4 (lower is better)
Translates to: DRSHAKPLTQTILAMNIHGEFIA*LLILLQ
Trigger: CTGGAGAAGTATGAGCAGGCATGCAATGAATTCACC...ATGAATGTTCATTGCGAGGATCGTTTGAGTCAAGGGTTTTGCATGGGATCTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CCA 90 bp GAAATATGCTTTCTGGAATTTCTACTCATGTCACGTGCCTTTGTGTATGGGAAGTTAGCTTGGCTTCCATaGGCTGACACATTGGTGGCT +
Preference number: 4 (lower is better)
Translates to: EICFLEFLLMSRAFVYGKLAWLP*ADTLVA
Trigger: AGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAA...CTTCCCATACACAAAGGCACGTGACATGAGTAGAAATTCCAGAAAGCATATTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
3UTR CAA 72 bp TCCCTTCATGTGTTCCATCCAGAGCTGGGGTCACTCTaGTTTCCAAGAGAACCCTTCAGCAAATCTTATAAT +
Preference number: 4 (lower is better)
Translates to: SLHVFHPELGSL*FPREPFSKSYN
Trigger: ATTATAAGATTTGCTGAAGGGTTCTCTTGGAAACAAGAGTGACCCCAGCTCTGGATGGAACACATGAAGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 72 bp GCAGTGCTTTTCTGCCTGGAGAAAGATCCTGTCTTGTaGGAAGCATACTTGTGGACTGTTGAAGTTAATCAG +
Preference number: 4 (lower is better)
Translates to: AVLFCLEKDPVL*EAYLWTVEVNQ
Trigger: CTGATTAACTTCAACAGTCCACAAGTATGCTTCCAACAAGACAGGATCTTTCTCCAGGCAGAAAAGCACTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 72 bp TATGCTTTCTGGAATTTCTACTCATGTCACGTGCCTTaGTGTATGGGAAGGGAAGGTAACTCTGCCTTGCAA +
Preference number: 4 (lower is better)
Translates to: YAFWNFYSCHVP*CMGREGNSALQ
Trigger: TTGCAAGGCAGAGTTACCTTCCCTTCCCATACACAAAGGCACGTGACATGAGTAGAAATTCCAGAAAGCATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CCA 90 bp GAGCTCCACTACTCACGCTTGTCTTCTTTACATATCTGGTTGGAATTCTGTCTGTTAAAGCATGTTTTCTaGCCTGCGCTTCATCCAAAC +
Preference number: 4 (lower is better)
Translates to: ELHYSRLSSLHIWLEFCLLKHVF*PALHPN
Trigger: GTTTGGATGAAGCGCAGGCCAGAAAACATGCTTTAA...CAGACAGAATTCCAACCAGATATGTAAAGAAGACAAGCGTGAGTAGTGGAGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 72 bp TCCCTGAAGCAGAAGAGTTGTCATAGGGACAAGGACTaGCAAGGTCTCATAACTGGATTCAAGTTGAAACTA +
Preference number: 4 (lower is better)
Translates to: SLKQKSCHRDKD*QGLITGFKLKL
Trigger: TAGTTTCAACTTGAATCCAGTTATGAGACCTTGCAAGTCCTTGTCCCTATGACAACTCTTCTGCTTCAGGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 72 bp ACAGCAGTGCTTTTCTGCCTGGAGAAAGATCCTGTCTaGTTGGAAGCATACTTGTGGACTGTTGAAGTTAAT +
Preference number: 4 (lower is better)
Translates to: TAVLFCLEKDPV*LEAYLWTVEVN
Trigger: ATTAACTTCAACAGTCCACAAGTATGCTTCCAACAAGACAGGATCTTTCTCCAGGCAGAAAAGCACTGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 72 bp AGAGAATTGCTATTGTGGAAGACAGAGAACTCCCACTaGTACTTAAAGACTATGAAGAATTCTCGGGCACAG +
Preference number: 4 (lower is better)
Translates to: RELLLWKTENSH*YLKTMKNSRAQ
Trigger: CTGTGCCCGAGAATTCTTCATAGTCTTTAAGTACAAGTGGGAGTTCTCTGTCTTCCACAATAGCAATTCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR TCA 90 bp TTGAACAAACTTTTATTGGTTACCCATTTGTCTTGTTTCCTAGGGATGCCACATATTTCCAAACCAGTTTaGTACCTGGGAGACTGTGAT +
Preference number: 4 (lower is better)
Translates to: LNKLLLVTHLSCFLGMPHISKPV*YLGDCD
Trigger: ATCACAGTCTCCCAGGTATCAAACTGGTTTGGAAAT...ATGTGGCATCCCTAGGAAACAAGACAAATGGGTAACCAATAAAAGTTTGTTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR TCA 90 bp CATTGTTCTGAGAGTGGTTTCAATGTATTCCTGCCACAAAGACAAAAATCACCGCAAATCTCCAGAGTTTaGCATGTTAAAAGAACTGGA +
Preference number: 4 (lower is better)
Translates to: HCSESGFNVFLPQRQKSPQISRV*HVKRTG
Trigger: TCCAGTTCTTTTAACATGTCAAACTCTGGAGATTTG...CGGTGATTTTTGTCTTTGTGGCAGGAATACATTGAAACCACTCTCAGAACAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 72 bp TTTCTAGTGACTGGGGTCAGCTGGACAAATTTACATTaGCCAAACAATTCTGTTCTGCATTATCTTCAAATA +
Preference number: 4 (lower is better)
Translates to: FLVTGVSWTNLH*PNNSVLHYLQI
Trigger: TATTTGAAGATAATGCAGAACAGAATTGTTTGGCAAATGTAAATTTGTCCAGCTGACCCCAGTCACTAGAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
3UTR CAA 72 bp TTATGTACATTGAACAAACTTTTATTGGTTACCCATTaGTCTTGTTTCCTAGGGATGCCACATTTTACTAGC +
Preference number: 4 (lower is better)
Translates to: LCTLNKLLLVTH*SCFLGMPHFTS
Trigger: GCTAGTAAAATGTGGCATCCCTAGGAAACAAGACAAATGGGTAACCAATAAAAGTTTGTTCAATGTACATAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CAA 90 bp GTCATAGAGGGCAGGGACCGGGCGTCTATAACAGAGAGCAGGGGCCAGGGAAGAGGGCCTGGTCCGGCTTaGCTCTCGAAGGAGGTTCAT +
Preference number: 5 (lower is better)
Translates to: VIEGRDRASITESRGQGRGPGPA*LSKEVH
Trigger: ATGAACCTCCTTCGAGAGCAAAGCCGGACCAGGCCC...TCTTCCCTGGCCCCTGCTCTCTGTTATAGACGCCCGGTCCCTGCCCTCTATGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR CAA 90 bp GATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAAACCCTCCCTCCATGGGCTGACACATaGGTGGCTGTGACAGCCGTT +
Preference number: 5 (lower is better)
Translates to: DCFDLQSDRFSVGRETLPPWADT*VAVTAV
Trigger: AACGGCTGTCACAGCCACCAATGTGTCAGCCCATGG...AGGGAGGGTTTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS CCA 90 bp GAAGGGTATCCACCCGCTGAGTTGGGAGTAGAGGGCGAGTTAGCTTaGCTTCCATGGGCTGACACATTGGTGGCTGTGACAGCCGTTTTG +
Preference number: 5 (lower is better)
Translates to: EGYPPAELGVEGELA*LPWADTLVAVTAVL
Trigger: CAAAACGGCTGTCACAGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCGCCCTCTACTCCCAACTCAGCGGGTGGATACCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072863.6
ENSMUST00000176790.8
ENSMUST00000188912.7
CDS-3UTR CAA 90 bp GTCATAGAGGGCAGGGACCGGGCGTCTATAACAGAGAGCAGGGGCCAGGGAAGATCTGTGGCTTGCTTGTaGAAATTCCGTCTCTTCCGC +
Preference number: 5 (lower is better)
Translates to: VIEGRDRASITESRGQGRSVACL*KFRLFR
Trigger: GCGGAAGAGACGGAATTTCAACAAGCAAGCCACAGA...TCTTCCCTGGCCCCTGCTCTCTGTTATAGACGCCCGGTCCCTGCCCTCTATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS TCA 90 bp TCCTGCCAACCTCCATTAGCACTGATGCCCTGCGGACTGTACATCTaGCTGGCTGCGAGTCCGTCACTGTATCCTCCTGTCTGGCTGATA +
Preference number: 5 (lower is better)
Translates to: SCQPPLALMPCGLYI*LAASPSLYPPVWLI
Trigger: TATCAGCCAGACAGGAGGATACAGTGACGGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGTGCTAATGGAGGTTGGCAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064438.11
ENSMUST00000176540.8
CDS GCA 90 bp ACCTCCATTAGCACTGATGCCCTGCGGACTGTACATCTGACTGGCTaGGAGTCCGTCACTGTATCCTCCTGTCTGGCTGATAACATGGCG +
Preference number: 5 (lower is better)
Translates to: TSISTDALRTVHLTG*ESVTVSSCLADNMA
Trigger: CGCCATGTTATCAGCCAGACAGGAGGATACAGTGACGGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGTGCTAATGGAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064438.11
ENSMUST00000176540.8
CDS CCA 90 bp GAACTGGAAGAACCCGCTGAGTTGGGAGTAGAGGGCGAGTTAGCTTaGCTTCCATGGGCTGACACATTGGTGGCTGTGACAGCCGTTTTG +
Preference number: 5 (lower is better)
Translates to: ELEEPAELGVEGELA*LPWADTLVAVTAVL
Trigger: CAAAACGGCTGTCACAGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCGCCCTCTACTCCCAACTCAGCGGGTTCTTCCAGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR CAA 90 bp TCCTTCAGTGAAGTCATAGAGGGCAGGGACCGGGCGTCTATAACAGAGAGCAGGTCTGCTAGCAGCATGTaGTCCAGTCGCATGAGCTGG +
Preference number: 5 (lower is better)
Translates to: SFSEVIEGRDRASITESRSASSM*SSRMSW
Trigger: CCAGCTCATGCGACTGGACAACATGCTGCTAGCAGA...CCTGCTCTCTGTTATAGACGCCCGGTCCCTGCCCTCTATGACTTCACTGAAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR CAA 90 bp TGGCACTGTGGGCTTGTCTCTCAGCCCTCAAGCTCTTGTACTTCTTCCTGGGAGGAAGAACCCGCTGAGTaGGGAGTAGAGGGCGAGTTA +
Preference number: 5 (lower is better)
Translates to: WHCGLVSQPSSSCTSSWEEEPAE*GVEGEL
Trigger: TAACTCGCCCTCTACTCCCAACTCAGCGGGTTCTTC...CTCCCAGGAAGAAGTACAAGAGCTTGAGGGCTGAGAGACAAGCCCACAGTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR CAA 90 bp GTACCAATCATCTGGTTACAACATCTGCTAGCTCCCTGCTCACCAGCCTTGTTTGGGCCTGGTCCGGCTTaGCTCTCGAAGGAGGTTCAT +
Preference number: 5 (lower is better)
Translates to: VPIIWLQHLLAPCSPALFGPGPA*LSKEVH
Trigger: ATGAACCTCCTTCGAGAGCAAAGCCGGACCAGGCCC...AAACAAGGCTGGTGAGCAGGGAGCTAGCAGATGTTGTAACCAGATGATTGGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CAA 90 bp GTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGAGAGAATCTGTGGCTTGCTTGTaGAAATTCCGTCTCTTCCGC +
Preference number: 5 (lower is better)
Translates to: VFADCFDLQSDRFSVGRESVACL*KFRLFR
Trigger: GCGGAAGAGACGGAATTTCAACAAGCAAGCCACAGA...TTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR CAA 90 bp ATCATCTGGTTACAACATCTGCTAGCTCCCTGCTCACCAGCCTTGTTTTGTCTGTCTGCTAGCAGCATGTaGTCCAGTCGCATGAGCTGG +
Preference number: 5 (lower is better)
Translates to: IIWLQHLLAPCSPALFCLSASSM*SSRMSW
Trigger: CCAGCTCATGCGACTGGACAACATGCTGCTAGCAGA...CAGACAAAACAAGGCTGGTGAGCAGGGAGCTAGCAGATGTTGTAACCAGATGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CAA 90 bp AGGAGACTCTTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGAATGCTCCACTGAGTaGTCTGAACCTGCACCCCCA +
Preference number: 5 (lower is better)
Translates to: RRLLLCLLIASTSSLTASECSTE*SEPAPP
Trigger: TGGGGGTGCAGGTTCAGACAACTCAGTGGAGCATTC...TGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR CAA 90 bp CCATGTGACAGATCCCATGCAAAACCCTTGACTCAAACGATCCTCGCAATGAACGAATGCTCCACTGAGTaGTCTGAACCTGCACCCCCA +
Preference number: 5 (lower is better)
Translates to: PCDRSHAKPLTQTILAMNECSTE*SEPAPP
Trigger: TGGGGGTGCAGGTTCAGACAACTCAGTGGAGCATTC...GTTCATTGCGAGGATCGTTTGAGTCAAGGGTTTTGCATGGGATCTGTCACATGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CAA 90 bp AGGAGACTCTTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCATATCCACCCGCTGAGTaGGGAGTAGAGGGCGAGTTA +
Preference number: 5 (lower is better)
Translates to: RRLLLCLLIASTSSLTASYPPAE*GVEGEL
Trigger: TAACTCGCCCTCTACTCCCAACTCAGCGGGTGGATA...TGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176790.8
CDS-3UTR CAA 90 bp AGGGCTCCTAGTGAGGTAAATTTGCCTCCTCAAACCACCAGCATGAAAACATACGAATGCTCCACTGAGTaGTCTGAACCTGCACCCCCA +
Preference number: 5 (lower is better)
Translates to: RAPSEVNLPPQTTSMKTYECSTE*SEPAPP
Trigger: TGGGGGTGCAGGTTCAGACAACTCAGTGGAGCATTC...GTATGTTTTCATGCTGGTGGTTTGAGGAGGCAAATTTACCTCACTAGGAGCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR CAA 90 bp GAGCTCCACTACTCACGCTTGTCTTCTTTACATATCTGGTTGGAATTCTGTCTGCCATGGGCTGACACATaGGTGGCTGTGACAGCCGTT +
Preference number: 5 (lower is better)
Translates to: ELHYSRLSSLHIWLEFCLPWADT*VAVTAV
Trigger: AACGGCTGTCACAGCCACCAATGTGTCAGCCCATGG...CAGACAGAATTCCAACCAGATATGTAAAGAAGACAAGCGTGAGTAGTGGAGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR CAA 90 bp GACAGATCCCATGCAAAACCCTTGACTCAAACGATCCTCGCAATGAACATTCATCCATGGGCTGACACATaGGTGGCTGTGACAGCCGTT +
Preference number: 5 (lower is better)
Translates to: DRSHAKPLTQTILAMNIHPWADT*VAVTAV
Trigger: AACGGCTGTCACAGCCACCAATGTGTCAGCCCATGG...ATGAATGTTCATTGCGAGGATCGTTTGAGTCAAGGGTTTTGCATGGGATCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CAA 90 bp TTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGATGGGTGGTGAATTCATaGCATGCCTGCTCATACTTC +
Preference number: 5 (lower is better)
Translates to: LLCLLIASTSSLTASALGWVVNS*HACSYF
Trigger: GAAGTATGAGCAGGCATGCAATGAATTCACCACCCA...TCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR CAA 90 bp CATTGTTCTGAGAGTGGTTTCAATGTATTCCTGCCACAAAGACAAAAATCACCGGGGCCTGGTCCGGCTTaGCTCTCGAAGGAGGTTCAT +
Preference number: 5 (lower is better)
Translates to: HCSESGFNVFLPQRQKSPGPGPA*LSKEVH
Trigger: ATGAACCTCCTTCGAGAGCAAAGCCGGACCAGGCCC...CGGTGATTTTTGTCTTTGTGGCAGGAATACATTGAAACCACTCTCAGAACAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS-3UTR CAA 90 bp GACAGATCCCATGCAAAACCCTTGACTCAAACGATCCTCGCAATGAACATTCATTATCCACCCGCTGAGTaGGGAGTAGAGGGCGAGTTA +
Preference number: 5 (lower is better)
Translates to: DRSHAKPLTQTILAMNIHYPPAE*GVEGEL
Trigger: TAACTCGCCCTCTACTCCCAACTCAGCGGGTGGATA...ATGAATGTTCATTGCGAGGATCGTTTGAGTCAAGGGTTTTGCATGGGATCTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CAA 90 bp TGCCCTATGTCACCAAAGATGGCACAAGATCCTAGAAGAGGGAAGCAACTTGCTTGGGTGGTGAATTCATaGCATGCCTGCTCATACTTC +
Preference number: 5 (lower is better)
Translates to: CPMSPKMAQDPRRGKQLAWVVNS*HACSYF
Trigger: GAAGTATGAGCAGGCATGCAATGAATTCACCACCCA...AGCAAGTTGCTTCCCTCTTCTAGGATCTTGTGCCATCTTTGGTGACATAGGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CAA 90 bp TCCTTCAGTGAAGTCATAGAGGGCAGGGACCGGGCGTCTATAACAGAGAGCAGGTTACCTATGTTCTTCTaGTACCGGATTCGCTTATTT +
Preference number: 5 (lower is better)
Translates to: SFSEVIEGRDRASITESRLPMFF*YRIRLF
Trigger: AAATAAGCGAATCCGGTACAAGAAGAACATAGGTAA...CCTGCTCTCTGTTATAGACGCCCGGTCCCTGCCCTCTATGACTTCACTGAAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR CAA 90 bp GAAATATGCTTTCTGGAATTTCTACTCATGTCACGTGCCTTTGTGTATGGGAAGTCTGTGGCTTGCTTGTaGAAATTCCGTCTCTTCCGC +
Preference number: 5 (lower is better)
Translates to: EICFLEFLLMSRAFVYGKSVACL*KFRLFR
Trigger: GCGGAAGAGACGGAATTTCAACAAGCAAGCCACAGA...CTTCCCATACACAAAGGCACGTGACATGAGTAGAAATTCCAGAAAGCATATTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS-3UTR CAA 90 bp TTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCGTTGGGATTACCTATGTTCTTCTaGTACCGGATTCGCTTATTT +
Preference number: 5 (lower is better)
Translates to: LLCLLIASTSSLTASALGLPMFF*YRIRLF
Trigger: AAATAAGCGAATCCGGTACAAGAAGAACATAGGTAA...TCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176540.8
ENSMUST00000176790.8
CDS-3UTR CAA 90 bp TGCCCTATGTCACCAAAGATGGCACAAGATCCTAGAAGAGGGAAGCAACTTGCTTTACCTATGTTCTTCTaGTACCGGATTCGCTTATTT +
Preference number: 5 (lower is better)
Translates to: CPMSPKMAQDPRRGKQLALPMFF*YRIRLF
Trigger: AAATAAGCGAATCCGGTACAAGAAGAACATAGGTAA...AGCAAGTTGCTTCCCTCTTCTAGGATCTTGTGCCATCTTTGGTGACATAGGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188912.7
CDS TCA 72 bp GGGAGTAGAGGGCGAGTTAGCTTGGCTTCCATGGGCTaGCACATTGGTGGCTGTGACAGCCGTTTTGGCAGC +
Preference number: 6 (lower is better)
Translates to: GSRGRVSLASMG*HIGGCDSRFGS
Trigger: GCTGCCAAAACGGCTGTCACAGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCGCCCTCTACTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072863.6
ENSMUST00000176540.8
ENSMUST00000176790.8
ENSMUST00000188912.7
CDS CCA 72 bp CCACCCGCTGAGTTGGGAGTAGAGGGCGAGTTAGCTTaGCTTCCATGGGCTGACACATTGGTGGCTGTGACA +
Preference number: 6 (lower is better)
Translates to: PPAELGVEGELA*LPWADTLVAVT
Trigger: TGTCACAGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCGCCCTCTACTCCCAACTCAGCGGGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072863.6
ENSMUST00000176790.8
ENSMUST00000188912.7
CDS TCA 72 bp CCTCCATTAGCACTGATGCCCTGCGGACTGTACATCTaGCTGGCTGCGAGTCCGTCACTGTATCCTCCTGTC +
Preference number: 6 (lower is better)
Translates to: PPLALMPCGLYI*LAASPSLYPPV
Trigger: GACAGGAGGATACAGTGACGGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGTGCTAATGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064438.11
ENSMUST00000176540.8
CDS GCA 72 bp AGCACTGATGCCCTGCGGACTGTACATCTGACTGGCTaGGAGTCCGTCACTGTATCCTCCTGTCTGGCTGAT +
Preference number: 6 (lower is better)
Translates to: STDALRTVHLTG*ESVTVSSCLAD
Trigger: ATCAGCCAGACAGGAGGATACAGTGACGGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064438.11
ENSMUST00000176540.8
CDS CCA 72 bp GAACCCGCTGAGTTGGGAGTAGAGGGCGAGTTAGCTTaGCTTCCATGGGCTGACACATTGGTGGCTGTGACA +
Preference number: 6 (lower is better)
Translates to: EPAELGVEGELA*LPWADTLVAVT
Trigger: TGTCACAGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCGCCCTCTACTCCCAACTCAGCGGGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176540.8
CDS CCA 72 bp GAGTTGGGAGTAGAGGGCGAGTTAGCTTGGCTTCCATaGGCTGACACATTGGTGGCTGTGACAGCCGTTTTG +
Preference number: 6 (lower is better)
Translates to: ELGVEGELAWLP*ADTLVAVTAVL
Trigger: CAAAACGGCTGTCACAGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCGCCCTCTACTCCCAACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072863.6
ENSMUST00000176540.8
ENSMUST00000176790.8
ENSMUST00000188912.7