Pregenerated sensors for PBSN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000003Ensembl transcript IDs: ENSMUST00000000003.14, ENSMUST00000114041.3
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TTCCAGGAAAAATATACTGGAAAATTCCTGATGTCATCTGTAATGCTAATCCTGCAGTTGTTTGCCTTTTaGCAAAACTCCAGCCACTCG | + |
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Preference number: 4 (lower is better) Translates to: FQEKYTGKFLMSSVMLILQLFAF*QNSSHS Trigger: CGAGTGGCTGGAGTTTTGGCAAAAGGCAAACAACTG...CAGGATTAGCATTACAGATGACATCAGGAATTTTCCAGTATATTTTTCCTGGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000000003.14 |
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| CDS-3UTR TCA 90 bp | AGGTTCCAGGAAAAATATACTGGAAAATTCCTGATGTCATCTGTAATGCTAATCCGTCAATCTTCTTTTTaGGACTCATCACACTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: RFQEKYTGKFLMSSVMLIRQSSF*DSSHWR Trigger: TCTCCAGTGTGATGAGTCTCAAAAAGAAGATTGACG...GATTAGCATTACAGATGACATCAGGAATTTTCCAGTATATTTTTCCTGGAACCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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| CDS-3UTR TCA 90 bp | TTCCAGGAAAAATATACTGGAAAATTCCTGATGTCATCTGTAATGCTAATCCTGCGTCAATCTTCTTTTTaGGACTCATCACACTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: FQEKYTGKFLMSSVMLILRQSSF*DSSHWR Trigger: TCTCCAGTGTGATGAGTCTCAAAAAGAAGATTGACG...CAGGATTAGCATTACAGATGACATCAGGAATTTTCCAGTATATTTTTCCTGGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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| CDS-3UTR TCA 90 bp | AGGTTCCAGGAAAAATATACTGGAAAATTCCTGATGTCATCTGTAATGCTAATCGTAGGTTCTCAATGGTaGGCCTTCATTTATCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: RFQEKYTGKFLMSSVMLIVGSQW*AFIYLF Trigger: GAAAAGATAAATGAAGGCTCACCATTGAGAACCTAC...GATTAGCATTACAGATGACATCAGGAATTTTCCAGTATATTTTTCCTGGAACCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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| CDS-3UTR TCA 90 bp | ACATTCAAAGATGCACTAATACCGATTAGAACATGGGAAACAATGAGTGAAAGAGTAGGTTCTCAATGGTaGGCCTTCATTTATCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: TFKDALIPIRTWETMSERVGSQW*AFIYLF Trigger: GAAAAGATAAATGAAGGCTCACCATTGAGAACCTAC...TCTTTCACTCATTGTTTCCCATGTTCTAATCGGTATTAGTGCATCTTTGAATGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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| CDS-3UTR GCA 90 bp | GAGAGACAAGATTGCTTCATCTTCATATTGATGTTTCAGGTTCCAGGAAAAATACCTTATTCAGTTGTTTaGCTTTTGCCAAAACTCCAG | + |
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Preference number: 4 (lower is better) Translates to: ERQDCFIFILMFQVPGKIPYSVV*LLPKLQ Trigger: CTGGAGTTTTGGCAAAAGGCAAACAACTGAATAAGG...TATTTTTCCTGGAACCTGAAACATCAATATGAAGATGAAGCAATCTTGTCTCTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000000003.14 |
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| CDS-3UTR GCA 90 bp | AGGTTCCAGGAAAAATATACTGGAAAATTCCTGATGTCATCTGTAATGCTAATCCATTCTCTTCCTCAATaGCCATTTCTTCCACTAAGT | + |
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Preference number: 4 (lower is better) Translates to: RFQEKYTGKFLMSSVMLIHSLPQ*PFLPLS Trigger: ACTTAGTGGAAGAAATGGGCATTGAGGAAGAGAATG...GATTAGCATTACAGATGACATCAGGAATTTTCCAGTATATTTTTCCTGGAACCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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| CDS-3UTR GCA 90 bp | GAGAGACAAGATTGCTTCATCTTCATATTGATGTTTCAGGTTCCAGGAAAAATACATTCTCTTCCTCAATaGCCATTTCTTCCACTAAGT | + |
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Preference number: 4 (lower is better) Translates to: ERQDCFIFILMFQVPGKIHSLPQ*PFLPLS Trigger: ACTTAGTGGAAGAAATGGGCATTGAGGAAGAGAATG...TATTTTTCCTGGAACCTGAAACATCAATATGAAGATGAAGCAATCTTGTCTCTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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| CDS-3UTR GCA 90 bp | ACATTCAAAGATGCACTAATACCGATTAGAACATGGGAAACAATGAGTGAAAGACCTTATTCAGTTGTTTaGCTTTTGACTGTGCATAGT | + |
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Preference number: 4 (lower is better) Translates to: TFKDALIPIRTWETMSERPYSVV*LLTVHS Trigger: ACTATGCACAGTCAAAAGGCAAACAACTGAATAAGG...TCTTTCACTCATTGTTTCCCATGTTCTAATCGGTATTAGTGCATCTTTGAATGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114041.3 |
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| CDS-3UTR CCA 90 bp | ACATTCAAAGATGCACTAATACCGATTAGAACATGGGAAACAATGAGTGAAAGATCTTTTCCATGGTACTaGCAGCTAAGTAAATTGTTT | + |
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Preference number: 4 (lower is better) Translates to: TFKDALIPIRTWETMSERSFPWY*QLSKLF Trigger: AAACAATTTACTTAGCTGCCAGTACCATGGAAAAGA...TCTTTCACTCATTGTTTCCCATGTTCTAATCGGTATTAGTGCATCTTTGAATGT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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| CDS-3UTR CCA 90 bp | TTCAGGTTCCAGGAAAAATATACTGGAAAATTCCTGATGTCATCTGTAATGCTATCTTTTCCATGGTACTaGCAGCTAAGTAAATTGTTT | + |
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Preference number: 4 (lower is better) Translates to: FRFQEKYTGKFLMSSVMLSFPWY*QLSKLF Trigger: AAACAATTTACTTAGCTGCCAGTACCATGGAAAAGA...TAGCATTACAGATGACATCAGGAATTTTCCAGTATATTTTTCCTGGAACCTGAA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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| CDS-3UTR CCA 90 bp | AGGTTCCAGGAAAAATATACTGGAAAATTCCTGATGTCATCTGTAATGCTAATCCATTTATCTTTTCCATaGTACTGGCAGCTAAGTAAA | + |
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Preference number: 4 (lower is better) Translates to: RFQEKYTGKFLMSSVMLIHLSFP*YWQLSK Trigger: TTTACTTAGCTGCCAGTACCATGGAAAAGATAAATG...GATTAGCATTACAGATGACATCAGGAATTTTCCAGTATATTTTTCCTGGAACCT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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| CDS-3UTR CCA 90 bp | ACATTCAAAGATGCACTAATACCGATTAGAACATGGGAAACAATGAGTGAAAGACATTTATCTTTTCCATaGTACTGGCAGCTAAGTAAA | + |
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Preference number: 4 (lower is better) Translates to: TFKDALIPIRTWETMSERHLSFP*YWQLSK Trigger: TTTACTTAGCTGCCAGTACCATGGAAAAGATAAATG...TCTTTCACTCATTGTTTCCCATGTTCTAATCGGTATTAGTGCATCTTTGAATGT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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| CDS TCA 90 bp | GCTGTACATTCTCTTCCTCAATGCCCATTTCTTCCACTAAGTTCATaGACTCCGTCATCTCCTCCTTATTCAGTTGTTTGCCTTTTGCCA | + |
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Preference number: 5 (lower is better) Translates to: AVHSLPQCPFLPLSS*TPSSPPYSVVCLLP Trigger: TGGCAAAAGGCAAACAACTGAATAAGGAGGAGATGACGGAGTTCATGAACTTAGTGGAAGAAATGGGCATTGAGGAAGAGAATGTACAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000003.14 |
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| CDS TCA 90 bp | GCTGTACATTCTCTTCCTCAATGCCCATTTCTTCCACTAAGTTCATaGACTCCGTCATCTCCTCCTTATTCAGTTGTTTGCCTTTTGACT | + |
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Preference number: 5 (lower is better) Translates to: AVHSLPQCPFLPLSS*TPSSPPYSVVCLLT Trigger: AGTCAAAAGGCAAACAACTGAATAAGGAGGAGATGACGGAGTTCATGAACTTAGTGGAAGAAATGGGCATTGAGGAAGAGAATGTACAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114041.3 |
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| CDS-3UTR CAA 90 bp | AGGTTCCAGGAAAAATATACTGGAAAATTCCTGATGTCATCTGTAATGCTAATCAAAATAGAGGTAGACTaGGTTGCATCTCCTCCCACA | + |
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Preference number: 5 (lower is better) Translates to: RFQEKYTGKFLMSSVMLIKIEVD*VASPPT Trigger: TGTGGGAGGAGATGCAACCAAGTCTACCTCTATTTT...GATTAGCATTACAGATGACATCAGGAATTTTCCAGTATATTTTTCCTGGAACCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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| CDS-3UTR CAA 90 bp | TTCCAGGAAAAATATACTGGAAAATTCCTGATGTCATCTGTAATGCTAATCCTGAAAATAGAGGTAGACTaGGTTGCATCTCCTCCCACA | + |
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Preference number: 5 (lower is better) Translates to: FQEKYTGKFLMSSVMLILKIEVD*VASPPT Trigger: TGTGGGAGGAGATGCAACCAAGTCTACCTCTATTTT...CAGGATTAGCATTACAGATGACATCAGGAATTTTCCAGTATATTTTTCCTGGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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| CDS-3UTR CAA 90 bp | ACATTCAAAGATGCACTAATACCGATTAGAACATGGGAAACAATGAGTGAAAGATCCTTATTCAGTTGTTaGCCTTTTGCCAAAACTCCA | + |
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Preference number: 5 (lower is better) Translates to: TFKDALIPIRTWETMSERSLFSC*PFAKTP Trigger: TGGAGTTTTGGCAAAAGGCAAACAACTGAATAAGGA...TCTTTCACTCATTGTTTCCCATGTTCTAATCGGTATTAGTGCATCTTTGAATGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000003.14 |
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| CDS-3UTR CAA 90 bp | TTCAGGTTCCAGGAAAAATATACTGGAAAATTCCTGATGTCATCTGTAATGCTATATGACTTTATACAGTaGGCACTTAGTCCCTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: FRFQEKYTGKFLMSSVMLYDFIQ*ALSPFL Trigger: AAGAAAGGGACTAAGTGCCAACTGTATAAAGTCATA...TAGCATTACAGATGACATCAGGAATTTTCCAGTATATTTTTCCTGGAACCTGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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| CDS-3UTR CAA 90 bp | TTTCAGGTTCCAGGAAAAATATACTGGAAAATTCCTGATGTCATCTGTAATGCTTATGACTTTATACAGTaGGCACTTAGTCCCTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: FQVPGKIYWKIPDVICNAYDFIQ*ALSPFL Trigger: AAGAAAGGGACTAAGTGCCAACTGTATAAAGTCATA...AGCATTACAGATGACATCAGGAATTTTCCAGTATATTTTTCCTGGAACCTGAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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| CDS-3UTR CAA 90 bp | TTCCAGGAAAAATATACTGGAAAATTCCTGATGTCATCTGTAATGCTAATCCTGTCAGTTGTTTGCCTTTaGACTGTGCATAGTAAACTT | + |
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Preference number: 5 (lower is better) Translates to: FQEKYTGKFLMSSVMLILSVVCL*TVHSKL Trigger: AAGTTTACTATGCACAGTCAAAAGGCAAACAACTGA...CAGGATTAGCATTACAGATGACATCAGGAATTTTCCAGTATATTTTTCCTGGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114041.3 |
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| CDS TCA 72 bp | CCCACACAAAATGTGACGGAAGTAGGTTCTCAATGGTaGGCCTTCATTTATCTTTTCCATGGTACTGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: PTQNVTEVGSQW*AFIYLFHGTGS Trigger: GCTGCCAGTACCATGGAAAAGATAAATGAAGGCTCACCATTGAGAACCTACTTCCGTCACATTTTGTGTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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| CDS GCA 72 bp | CTCCGTCATCTCCTCCTTATTCAGTTGTTTGCCTTTTaGCAAAACTCCAGCCACTCGTGTGACATCATTTCT | + |
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Preference number: 6 (lower is better) Translates to: LRHLLLIQLFAF*QNSSHSCDIIS Trigger: AGAAATGATGTCACACGAGTGGCTGGAGTTTTGGCAAAAGGCAAACAACTGAATAAGGAGGAGATGACGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000003.14 |
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| CDS TCA 72 bp | TCTCTTCCTCAATGCCCATTTCTTCCACTAAGTTCATaGACTCCGTCATCTCCTCCTTATTCAGTTGTTTGC | + |
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Preference number: 6 (lower is better) Translates to: SLPQCPFLPLSS*TPSSPPYSVVC Trigger: GCAAACAACTGAATAAGGAGGAGATGACGGAGTTCATGAACTTAGTGGAAGAAATGGGCATTGAGGAAGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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| CDS CCA 72 bp | TCAATGGTGAGCCTTCATTTATCTTTTCCATGGTACTaGCAGCTAAGTAAATTGTTTGCCAAGGCCCGTCAA | + |
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Preference number: 6 (lower is better) Translates to: SMVSLHLSFPWY*QLSKLFAKARQ Trigger: TTGACGGGCCTTGGCAAACAATTTACTTAGCTGCCAGTACCATGGAAAAGATAAATGAAGGCTCACCATTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000003.14 ENSMUST00000114041.3 |
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