RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PBRM1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042323

Ensembl transcript IDs: ENSMUST00000022471.12, ENSMUST00000022474.14, ENSMUST00000052239.12, ENSMUST00000090214.11, ENSMUST00000112092.8, ENSMUST00000112094.8, ENSMUST00000112095.8, ENSMUST00000112098.11, ENSMUST00000112106.8, ENSMUST00000123678.8, ENSMUST00000135704.2, ENSMUST00000136237.8, ENSMUST00000144009.2, ENSMUST00000146325.8, ENSMUST00000156628.8

Found 763 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGGGTGAAGTGGCTGCATGCTGCCCATGCTAACAAGGCCATCAACTaGGCCCTGCAAAGGTGGAAGGCCTGGCGGATAGCCACCCATCAT +
Preference number: 1 (lower is better)
Translates to: RVKWLHAAHANKAIN*ALQRWKAWRIATHH
Trigger: ATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGCATGCAGCCACTTCACCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR CCA 90 bp CCTGTTGTCCATACGGACTTCCACCTGGTGCTGGAGTCCCTACCATaGGGGCTACTCCTTGATTCATCACACCCGGTGGTGGGATGCCTG +
Preference number: 1 (lower is better)
Translates to: PVVHTDFHLVLESLP*GLLLDSSHPVVGCL
Trigger: CAGGCATCCCACCACCGGGTGTGATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATGGACAACAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR GCA 90 bp AAACCACCCCCGGGAAATGTTTGCTGCTGCCTGAGCACTGCACACTaGCTCAGTGCTTACGCTAGGGCCGTGTTGGAAAGACAGGGTTGT +
Preference number: 1 (lower is better)
Translates to: KPPPGNVCCCLSTAH*LSAYARAVLERQGC
Trigger: ACAACCCTGTCTTTCCAACACGGCCCTAGCGTAAGCACTGAGGCAGTGTGCAGTGCTCAGGCAGCAGCAAACATTTCCCGGGGGTGGTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR CCA 90 bp CATGCTGCCCATGCTAACAAGGCCATCAACTGGGCCCTGCAAAGGTaGAAGGCCTGGCGGATAGCCACCCATCATGCCTTCATATTCTGC +
Preference number: 1 (lower is better)
Translates to: HAAHANKAINWALQR*KAWRIATHHAFIFC
Trigger: GCAGAATATGAAGGCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR TCA 90 bp GGCGCCAGAGGGCATCTGCCATGGTGGTGTGTGCCCCTTTACTTTTaGGCCAGTGAGAAGGTAGGCGGCTCTCCTGTTCTTTGGACAAAT +
Preference number: 1 (lower is better)
Translates to: GARGHLPWWCVPLYF*ASEKVGGSPVLWTN
Trigger: ATTTGTCCAAAGAACAGGAGAGCCGCCTACCTTCTCACTGGCTCAAAAGTAAAGGGGCACACACCACCATGGCAGATGCCCTCTGGCGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR CCA 90 bp TCCCAAAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTaGAGTCCCTACCATGGGGGCTACTCCTTGATTCATCACACCCGG +
Preference number: 1 (lower is better)
Translates to: SQNSYLLSIRTSTWC*SPYHGGYSLIHHTR
Trigger: CCGGGTGTGATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR GCA 90 bp AGGTCCCAAAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTaGTGGAGTCCCTACCATGGGGGCTACTCCTTGATTCATCACACC +
Preference number: 1 (lower is better)
Translates to: RSQNSYLLSIRTSTW*WSPYHGGYSLIHHT
Trigger: GGTGTGATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTGGGACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR CCA 90 bp CATGCTAACAAGGCCATCAACTGGGCCCTGCAAAGGTGGAAGGCCTaGCGGATAGCCACCCATCATGCCTTCATATTCTGCTTTCTTGGC +
Preference number: 1 (lower is better)
Translates to: HANKAINWALQRWKA*RIATHHAFIFCFLG
Trigger: GCCAAGAAAGCAGAATATGAAGGCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR CCA 90 bp TGGAGGTCCCAAAACTCCTACCTGTTGTCCATACGGACTTCCACCTaGTGCTGGAGTCCCTACCATGGGGGCTACTCCTTGATTCATCAC +
Preference number: 1 (lower is better)
Translates to: WRSQNSYLLSIRTST*CWSPYHGGYSLIHH
Trigger: GTGATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTGGGACCTCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR TCA 90 bp CTTGGGAGGAAGAGGCAGAGTTTGAGACTAGCCTGGTCTATACACTaGGCTCCAGTCCAGCCAGGGTTGGTAGTAGGACCATGTCTCAAG +
Preference number: 1 (lower is better)
Translates to: LGRKRQSLRLAWSIH*APVQPGLVVGPCLK
Trigger: CTTGAGACATGGTCCTACTACCAACCCTGGCTGGACTGGAGCTCAGTGTATAGACCAGGCTAGTCTCAAACTCTGCCTCTTCCTCCCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR CCA 90 bp TTGTGGTTGCTGAGCACTATGGTACCTGCCCTTAATCCCAGCACTTaGGAGGAAGAGGCAGAGTTTGAGACTAGCCTGGTCTATACACTG +
Preference number: 1 (lower is better)
Translates to: LWLLSTMVPALNPST*EEEAEFETSLVYTL
Trigger: CAGTGTATAGACCAGGCTAGTCTCAAACTCTGCCTCTTCCTCCCAAGTGCTGGGATTAAGGGCAGGTACCATAGTGCTCAGCAACCACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR CCA 90 bp ACCCATACTTTCTCAATTCTGCCCACACGAGGGCGCACCAAGCCGTaGGATTTGATGAAGACACAATCACCAACCTTCAGCCACATGTCA +
Preference number: 1 (lower is better)
Translates to: THTFSILPTRGRTKP*DLMKTQSPTFSHMS
Trigger: TGACATGTGGCTGAAGGTTGGTGATTGTGTCTTCATCAAATCCCACGGCTTGGTGCGCCCTCGTGTGGGCAGAATTGAGAAAGTATGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR TCA 90 bp GTTGGATTCAGCACTGAGTCCTTCAATGTATTTCAGGTAGGCCTCTaGGTGGAGAAGCCTTTGGGTCTTTGGTGGGGGAGCCACAAACAT +
Preference number: 1 (lower is better)
Translates to: VGFSTESFNVFQVGL*VEKPLGLWWGSHKH
Trigger: ATGTTTGTGGCTCCCCCACCAAAGACCCAAAGGCTTCTCCACTCAGAGGCCTACCTGAAATACATTGAAGGACTCAGTGCTGAATCCAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR GCA 90 bp AAGGAAATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTaGACAGCTATGTGCAGGCACAGCTTGTGTCCACTTACACTCTTT +
Preference number: 1 (lower is better)
Translates to: KEIKNPGHVYVGSLP*TAMCRHSLCPLTLF
Trigger: AAAGAGTGTAAGTGGACACAAGCTGTGCCTGCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTATTTCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
3UTR TCA 90 bp ATTTTCTGGTATTTCAGTTGGCCTGCAGGAGAGGAAGTCCTTGAATaGCAGCACTGCACATTTCCCCAGAATACAACTCATAGGGCAGGT +
Preference number: 1 (lower is better)
Translates to: IFWYFSWPAGEEVLE*QHCTFPQNTTHRAG
Trigger: ACCTGCCCTATGAGTTGTATTCTGGGGAAATGTGCAGTGCTGTCATTCAAGGACTTCCTCTCCTGCAGGCCAACTGAAATACCAGAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR TCA 90 bp AGTGATGTGATTAAACATTTTCTAGGTTGTATGCCTGTCGGATGTTaGGAGTGTCTCGAAGCATTAAATCCCGTAGGCGCCAGAGGGCAT +
Preference number: 1 (lower is better)
Translates to: SDVIKHFLGCMPVGC*ECLEALNPVGARGH
Trigger: ATGCCCTCTGGCGCCTACGGGATTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGAAAATGTTTAATCACATCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR CCA 90 bp AATCCTCCCACAGTCTCTCAATACACACTATATGTGGTTGTAGATTaGCCTCCGCAGGTTCAACATAGACATAATCTCCGACATGATACA +
Preference number: 1 (lower is better)
Translates to: NPPTVSQYTLYVVVD*PPQVQHRHNLRHDT
Trigger: TGTATCATGTCGGAGATTATGTCTATGTTGAACCTGCGGAGGCCAATCTACAACCACATATAGTGTGTATTGAGAGACTGTGGGAGGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR GCA 90 bp CGGATGTTGAGAGTGTCTCGAAGCATTAAATCCCGTAGGCGCCAGAGGGCATCTGCGCCAGAGGGCATCTaGCATGGTGGTGTGTGCCCC +
Preference number: 2 (lower is better)
Translates to: RMLRVSRSIKSRRRQRASAPEGI*HGGVCP
Trigger: GGGGCACACACCACCATGGCAGATGCCCTCTGGCGC...AGATGCCCTCTGGCGCCTACGGGATTTAATGCTTCGAGACACTCTCAACATCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR TCA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTGCCTGGTCTATACACTaGGCTCCAGTCCAGCCAGGG +
Preference number: 2 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALAWSIH*APVQPG
Trigger: CCCTGGCTGGACTGGAGCTCAGTGTATAGACCAGGC...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR-3UTR GCA 90 bp CCTGGAGGTCCCAAAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTCCATCAACTGGGCCCTaGAAAGGTGGAAGGCCTGGC +
Preference number: 2 (lower is better)
Translates to: PGGPKTPTCCPYGLPPGAPSTGP*KGGRPG
Trigger: GCCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGG...AGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTGGGACCTCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR GCA 90 bp GGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCAAAGCGGACTTCCACCTGGTaGTGGAGTCCCTACCATGGG +
Preference number: 2 (lower is better)
Translates to: GGSPVLWTNGHPVFELPKRTSTW*WSPYHG
Trigger: CCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCG...CTTTGGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp GCAAAGGTGGAAGGCCTGGCGGATAGCCACCCATCATGCCTTCATATTCTGCTTTGGGCCCTGCAAAGGTaGAAGGCCTGGCGGATAGCC +
Preference number: 2 (lower is better)
Translates to: AKVEGLADSHPSCLHILLWALQR*KAWRIA
Trigger: GGCTATCCGCCAGGCCTTCCACCTTTGCAGGGCCCA...AAGCAGAATATGAAGGCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp AGCATTAAATCCCGTAGGCGCCAGAGGGCATCTGCCATGGTGGTGTGTGCCCCTGGGGAGCCACAAACATaGGCGTTGTTGGCTGCTGTA +
Preference number: 2 (lower is better)
Translates to: SIKSRRRQRASAMVVCAPGEPQT*ALLAAV
Trigger: TACAGCAGCCAACAACGCCCATGTTTGTGGCTCCCC...AGGGGCACACACCACCATGGCAGATGCCCTCTGGCGCCTACGGGATTTAATGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp GGTAGGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCAAACATGGGCGTTGTTaGCTGCTGTATGACAGGGGG +
Preference number: 2 (lower is better)
Translates to: GRRLSCSLDKWTSRLRAAKHGRC*LLYDRG
Trigger: CCCCCTGTCATACAGCAGCCAACAACGCCCATGTTT...GGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCCTACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp CGGATGTTGAGAGTGTCTCGAAGCATTAAATCCCGTAGGCGCCAGAGGGCATCTGAGTGGAGAAGCCTTTaGGTCTTTGGTGGGGGAGCC +
Preference number: 2 (lower is better)
Translates to: RMLRVSRSIKSRRRQRASEWRSL*VFGGGA
Trigger: GGCTCCCCCACCAAAGACCCAAAGGCTTCTCCACTC...AGATGCCCTCTGGCGCCTACGGGATTTAATGCTTCGAGACACTCTCAACATCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR TCA 90 bp GGTAGGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCCCATTTTTCACCAGCTaGATCCTCCCACAGTCTCTC +
Preference number: 2 (lower is better)
Translates to: GRRLSCSLDKWTSRLRAAPFFTS*ILPQSL
Trigger: GAGAGACTGTGGGAGGATTCAGCTGGTGAAAAATGG...GGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCCTACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR TCA 90 bp CCTGGAGGTCCCAAAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTAGGGGTGTCTGCAGTTaGGGTAGAGATGGAGCTTCA +
Preference number: 2 (lower is better)
Translates to: PGGPKTPTCCPYGLPPGARGVCS*GRDGAS
Trigger: TGAAGCTCCATCTCTACCTCAACTGCAGACACCCCT...AGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTGGGACCTCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR TCA 90 bp CGGATGTTGAGAGTGTCTCGAAGCATTAAATCCCGTAGGCGCCAGAGGGCATCTATGGGGGCTACTCCTTaGTTCATCACACCCGGTGGT +
Preference number: 2 (lower is better)
Translates to: RMLRVSRSIKSRRRQRASMGATP*FITPGG
Trigger: ACCACCGGGTGTGATGAATCAAGGAGTAGCCCCCAT...AGATGCCCTCTGGCGCCTACGGGATTTAATGCTTCGAGACACTCTCAACATCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp TCAGGGCTTGCCTTAGGGACACAGCCCCCTGTGCTGGATTTTTACTGCCTCGGGCTTAATCCCAGCACTTaGGAGGAAGAGGCAGAGTTT +
Preference number: 2 (lower is better)
Translates to: SGLALGTQPPVLDFYCLGLNPST*EEEAEF
Trigger: AAACTCTGCCTCTTCCTCCCAAGTGCTGGGATTAAG...CCCGAGGCAGTAAAAATCCAGCACAGGGGGCTGTGTCCCTAAGGCAAGCCCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR-3UTR CCA 90 bp CCTGGAGGTCCCAAAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTGGGCGCACCAAGCCGTaGGATTTGATGAAGACACAA +
Preference number: 2 (lower is better)
Translates to: PGGPKTPTCCPYGLPPGAGRTKP*DLMKTQ
Trigger: TTGTGTCTTCATCAAATCCCACGGCTTGGTGCGCCC...AGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTGGGACCTCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp GGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCAAAGCTTTGGGGTAGACTGTaGGGGTGTATAGGGCATGAG +
Preference number: 2 (lower is better)
Translates to: GGSPVLWTNGHPVFELPKLWGRL*GCIGHE
Trigger: CTCATGCCCTATACACCCCCACAGTCTACCCCAAAG...CTTTGGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR TCA 90 bp TCAGGGCTTGCCTTAGGGACACAGCCCCCTGTGCTGGATTTTTACTGCCTCGGGAACAATCATTCTCAATaGACAACAGGGCAGTGGCAG +
Preference number: 2 (lower is better)
Translates to: SGLALGTQPPVLDFYCLGNNHSQ*TTGQWQ
Trigger: CTGCCACTGCCCTGTTGTTCATTGAGAATGATTGTT...CCCGAGGCAGTAAAAATCCAGCACAGGGGGCTGTGTCCCTAAGGCAAGCCCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR-3UTR TCA 90 bp TGGGCCCTGCAAAGGTGGAAGGCCTGGCGGATAGCCACCCATCATGCCTTCATAGAGATGGAGCTTCAATaGCTTCACTATCCTCTTCTC +
Preference number: 2 (lower is better)
Translates to: WALQRWKAWRIATHHAFIEMELQ*LHYPLL
Trigger: GAGAAGAGGATAGTGAAGTCATTGAAGCTCCATCTC...TATGAAGGCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGCAGGGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp GCTGAGCTCCCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATGCCTTTGGCAGACTTTaGGGTAGACTGTGGGGGTGT +
Preference number: 2 (lower is better)
Translates to: AELPKRVVWVLGFNHSSHAFGRL*GRLWGC
Trigger: ACACCCCCACAGTCTACCCCAAAGTCTGCCAAAGGC...ATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGGGAGCTCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp CGGATGTTGAGAGTGTCTCGAAGCATTAAATCCCGTAGGCGCCAGAGGGCATCTAACAAGGCCATCAACTaGGCCCTGCAAAGGTGGAAG +
Preference number: 2 (lower is better)
Translates to: RMLRVSRSIKSRRRQRASNKAIN*ALQRWK
Trigger: CTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTT...AGATGCCCTCTGGCGCCTACGGGATTTAATGCTTCGAGACACTCTCAACATCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp GCCAAAGTTTGGTCCCACTTGCTAATGCTGTTGGATTCAGCACTGAGTCCTTCAACTTCCACCTGGTGCTaGAGTCCCTACCATGGGGGC +
Preference number: 2 (lower is better)
Translates to: AKVWSHLLMLLDSALSPSTSTWC*SPYHGG
Trigger: GCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGT...TGAAGGACTCAGTGCTGAATCCAACAGCATTAGCAAGTGGGACCAAACTTTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp CGGATGTTGAGAGTGTCTCGAAGCATTAAATCCCGTAGGCGCCAGAGGGCATCTAAACATGGGCGTTGTTaGCTGCTGTATGACAGGGGG +
Preference number: 2 (lower is better)
Translates to: RMLRVSRSIKSRRRQRASKHGRC*LLYDRG
Trigger: CCCCCTGTCATACAGCAGCCAACAACGCCCATGTTT...AGATGCCCTCTGGCGCCTACGGGATTTAATGCTTCGAGACACTCTCAACATCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp CTTCGAGCTGCCAAAGTTTGGTCCCACTTGCTAATGCTGTTGGATTCAGCACTGGAGTGGAGAAGCCTTTaGGTCTTTGGTGGGGGAGCC +
Preference number: 2 (lower is better)
Translates to: LRAAKVWSHLLMLLDSALEWRSL*VFGGGA
Trigger: GGCTCCCCCACCAAAGACCCAAAGGCTTCTCCACTC...CAGTGCTGAATCCAACAGCATTAGCAAGTGGGACCAAACTTTGGCAGCTCGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR TCA 90 bp AGCATTAAATCCCGTAGGCGCCAGAGGGCATCTGCCATGGTGGTGTGTGCCCCTACCTCTTCAAACCCTTaGACTTCTTCATCTGCTTGT +
Preference number: 2 (lower is better)
Translates to: SIKSRRRQRASAMVVCAPTSSNP*TSSSAC
Trigger: ACAAGCAGATGAAGAAGTTCAAGGGTTTGAAGAGGT...AGGGGCACACACCACCATGGCAGATGCCCTCTGGCGCCTACGGGATTTAATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR TCA 90 bp GGTAGGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCGTTTTGTGGTATAGCTaGGTGCTGGAGAAAGAAGGA +
Preference number: 2 (lower is better)
Translates to: GRRLSCSLDKWTSRLRAAVLWYS*VLEKEG
Trigger: TCCTTCTTTCTCCAGCACTCAGCTATACCACAAAAC...GGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCCTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136237.8
3UTR-3UTR GCA 90 bp TCTAGGTTGTATGCCTGTCGGATGTTGAGAGTGTCTCGAAGCATTAAATCCCGTGGAGGTGGTGCCTGCTaGCCTGGAGGTCCCAAAACT +
Preference number: 2 (lower is better)
Translates to: SRLYACRMLRVSRSIKSRGGGAC*PGGPKT
Trigger: AGTTTTGGGACCTCCAGGGCAGCAGGCACCACCTCC...ACGGGATTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR GCA 90 bp TCTAGGTTGTATGCCTGTCGGATGTTGAGAGTGTCTCGAAGCATTAAATCCCGTAGGATATGGAGGTGGTaGCTGCTGCCCTGGAGGTCC +
Preference number: 2 (lower is better)
Translates to: SRLYACRMLRVSRSIKSRRIWRW*LLPWRS
Trigger: GGACCTCCAGGGCAGCAGGCACCACCTCCATATCCT...ACGGGATTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp GAGTGTCTCGAAGCATTAAATCCCGTAGGCGCCAGAGGGCATCTGCCATGGTGGTATGTGGTTGTAGATTaGCCTCCGCAGGTTCAACAT +
Preference number: 2 (lower is better)
Translates to: ECLEALNPVGARGHLPWWYVVVD*PPQVQH
Trigger: ATGTTGAACCTGCGGAGGCCAATCTACAACCACATA...CCACCATGGCAGATGCCCTCTGGCGCCTACGGGATTTAATGCTTCGAGACACTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp GCTGCCCATGCTAACAAGGCCATCAACTGGGCCCTGCAAAGGTGGAAGGCCTGGATGGAATGTTTCATTTaGCCGATAAAACCAACAGCC +
Preference number: 2 (lower is better)
Translates to: AAHANKAINWALQRWKAWMECFI*PIKPTA
Trigger: GGCTGTTGGTTTTATCGGCCAAATGAAACATTCCAT...CCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR GCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCCCCTGCACAGCTATGTaGAGGCACAGCTTGTGTCCA +
Preference number: 2 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTPCTAM*RHSLCP
Trigger: TGGACACAAGCTGTGCCTGCACATAGCTGTGCAGGG...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR-3UTR GCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCCTGAGCACTGCACACTaGCTCAGTGCTTACGCTAGG +
Preference number: 2 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTLSTAH*LSAYAR
Trigger: CCTAGCGTAAGCACTGAGGCAGTGTGCAGTGCTCAG...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR-3UTR GCA 90 bp GCAAAGGTGGAAGGCCTGGCGGATAGCCACCCATCATGCCTTCATATTCTGCTTTTTCCTTCTTTGCACTaGCTTTGGCAGACTTTGGGG +
Preference number: 2 (lower is better)
Translates to: AKVEGLADSHPSCLHILLFPSLH*LWQTLG
Trigger: CCCCAAAGTCTGCCAAAGGCAGTGCAAAGAAGGAAA...AAGCAGAATATGAAGGCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp TTCTCAATTCTGCCCACACGAGGGCGCACCAAGCCGTGGGATTTGATGAAGACAAAAGTAGTGGCAACCTaGCTCACCATTGGACATCTC +
Preference number: 2 (lower is better)
Translates to: FSILPTRGRTKPWDLMKTKVVAT*LTIGHL
Trigger: GAGATGTCCAATGGTGAGCCAGGTTGCCACTACTTT...TGTCTTCATCAAATCCCACGGCTTGGTGCGCCCTCGTGTGGGCAGAATTGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp GCAAAGGTGGAAGGCCTGGCGGATAGCCACCCATCATGCCTTCATATTCTGCTTTTCTGGTATTTCAGTTaGCCTGCAGGAGAGGAAGTC +
Preference number: 2 (lower is better)
Translates to: AKVEGLADSHPSCLHILLFWYFS*PAGEEV
Trigger: GACTTCCTCTCCTGCAGGCCAACTGAAATACCAGAA...AAGCAGAATATGAAGGCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR GCA 90 bp AAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTGGAGTCCCTACCACGCTCCACAACTCTTTaGTTCCACAGAAGAAACAGT +
Preference number: 2 (lower is better)
Translates to: KLLPVVHTDFHLVLESLPRSTTL*FHRRNS
Trigger: ACTGTTTCTTCTGTGGAAGCAAAGAGTTGTGGAGCG...TGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR GCA 90 bp ACCGAAGCTGCTCAAAGTAGTGGCAACCTGGCTCACCATTGGACATCTCCACAGCGCTCCACAACTCTTTaGTTCCACAGAAGAAACAGT +
Preference number: 2 (lower is better)
Translates to: TEAAQSSGNLAHHWTSPQRSTTL*FHRRNS
Trigger: ACTGTTTCTTCTGTGGAAGCAAAGAGTTGTGGAGCG...CTGTGGAGATGTCCAATGGTGAGCCAGGTTGCCACTACTTTGAGCAGCTTCGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCACGCTAGGGCCGTGTTaGAAAGACAGGGTTGTGGTT +
Preference number: 2 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTTLGPC*KDRVVV
Trigger: AACCACAACCCTGTCTTTCCAACACGGCCCTAGCGT...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR-3UTR CCA 90 bp CTGCATGCTGCCCATGCTAACAAGGCCATCAACTGGGCCCTGCAAAGGTGGAAGCAGAATGTCATTTTCTaGTATTTCAGTTGGCCTGCA +
Preference number: 2 (lower is better)
Translates to: LHAAHANKAINWALQRWKQNVIF*YFSWPA
Trigger: TGCAGGCCAACTGAAATACCAGAAAATGACATTCTG...CTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGCATGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp GCCAAAGTTTGGTCCCACTTGCTAATGCTGTTGGATTCAGCACTGAGTCCTTCACTGGAGTCCCTACCATaGGGGCTACTCCTTGATTCA +
Preference number: 2 (lower is better)
Translates to: AKVWSHLLMLLDSALSPSLESLP*GLLLDS
Trigger: TGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAG...TGAAGGACTCAGTGCTGAATCCAACAGCATTAGCAAGTGGGACCAAACTTTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR CAA 90 bp CATCTGAGTTGTCTGTATTCTTCTCATCATCCCCTTTATCTGCATTaGCAAACACAGAGGCCACTCGGACCACAGGCAAAGGCACATCCC +
Preference number: 2 (lower is better)
Translates to: HLSCLYSSHHPLYLH*QTQRPLGPQAKAHP
Trigger: GGGATGTGCCTTTGCCTGTGGTCCGAGTGGCCTCTGTGTTTGCAAATGCAGATAAAGGGGATGATGAGAAGAATACAGACAACTCAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR TCA 90 bp TCTAGGTTGTATGCCTGTCGGATGTTGAGAGTGTCTCGAAGCATTAAATCCCGTTTTCAGGTAGGCCTCTaGGTGGAGAAGCCTTTGGGT +
Preference number: 2 (lower is better)
Translates to: SRLYACRMLRVSRSIKSRFQVGL*VEKPLG
Trigger: ACCCAAAGGCTTCTCCACTCAGAGGCCTACCTGAAA...ACGGGATTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp GCTGAGCTCCCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATTATGTGGTTGTAGATTaGCCTCCGCAGGTTCAACAT +
Preference number: 2 (lower is better)
Translates to: AELPKRVVWVLGFNHSSHYVVVD*PPQVQH
Trigger: ATGTTGAACCTGCGGAGGCCAATCTACAACCACATA...ATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGGGAGCTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp CCTGGAGGTCCCAAAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTCATATTCTGCTTTCTTaGCTGTTTCAAGGTTTCTCC +
Preference number: 2 (lower is better)
Translates to: PGGPKTPTCCPYGLPPGAHILLS*LFQGFS
Trigger: GGAGAAACCTTGAAACAGCCAAGAAAGCAGAATATG...AGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTGGGACCTCCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp CTTCGAGCTGCCAAAGTTTGGTCCCACTTGCTAATGCTGTTGGATTCAGCACTGGGTATAGCTGAGTGCTaGAGAAAGAAGGATCTCTCC +
Preference number: 2 (lower is better)
Translates to: LRAAKVWSHLLMLLDSALGIAEC*RKKDLS
Trigger: GGAGAGATCCTTCTTTCTCCAGCACTCAGCTATACC...CAGTGCTGAATCCAACAGCATTAGCAAGTGGGACCAAACTTTGGCAGCTCGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136237.8
3UTR-3UTR TCA 90 bp GCCAAAGTTTGGTCCCACTTGCTAATGCTGTTGGATTCAGCACTGAGTCCTTCAAGGGACAAATCTAACTaGACTGATGGGCATGGTCCA +
Preference number: 2 (lower is better)
Translates to: AKVWSHLLMLLDSALSPSRDKSN*TDGHGP
Trigger: TGGACCATGCCCATCAGTTCAGTTAGATTTGTCCCT...TGAAGGACTCAGTGCTGAATCCAACAGCATTAGCAAGTGGGACCAAACTTTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR TCA 90 bp ACCGAAGCTGCTCAAAGTAGTGGCAACCTGGCTCACCATTGGACATCTCCACAGAGCTCTATTGTCATCTaGGTTGTCTGTATTCTTCTC +
Preference number: 2 (lower is better)
Translates to: TEAAQSSGNLAHHWTSPQSSIVI*VVCILL
Trigger: GAGAAGAATACAGACAACTCAGATGACAATAGAGCT...CTGTGGAGATGTCCAATGGTGAGCCAGGTTGCCACTACTTTGAGCAGCTTCGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR TCA 90 bp AAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTGGAGTCCCTACCAAACTTTAGCAGAGAGTaGAAACCTCTTCAAACCCTT +
Preference number: 2 (lower is better)
Translates to: KLLPVVHTDFHLVLESLPNFSRE*KPLQTL
Trigger: AAGGGTTTGAAGAGGTTTTCACTCTCTGCTAAAGTT...TGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp CGGATGTTGAGAGTGTCTCGAAGCATTAAATCCCGTAGGCGCCAGAGGGCATCTATGGAATGTTTCATTTaGCCGATAAAACCAACAGCC +
Preference number: 2 (lower is better)
Translates to: RMLRVSRSIKSRRRQRASMECFI*PIKPTA
Trigger: GGCTGTTGGTTTTATCGGCCAAATGAAACATTCCAT...AGATGCCCTCTGGCGCCTACGGGATTTAATGCTTCGAGACACTCTCAACATCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR GCA 90 bp CTTCGAGCTGCCAAAGTTTGGTCCCACTTGCTAATGCTGTTGGATTCAGCACTGATCATCCCCTTTATCTaGATTTGCAAACACAGAGGC +
Preference number: 2 (lower is better)
Translates to: LRAAKVWSHLLMLLDSALIIPFI*ICKHRG
Trigger: GCCTCTGTGTTTGCAAATGCAGATAAAGGGGATGAT...CAGTGCTGAATCCAACAGCATTAGCAAGTGGGACCAAACTTTGGCAGCTCGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR CAA 90 bp ATGTCATTTTCTGGTATTTCAGTTGGCCTGCAGGAGAGGAAGTCCTaGAATGACAGCACTGCACATTTCCCCAGAATACAACTCATAGGG +
Preference number: 2 (lower is better)
Translates to: MSFSGISVGLQERKS*NDSTAHFPRIQLIG
Trigger: CCCTATGAGTTGTATTCTGGGGAAATGTGCAGTGCTGTCATTCAAGGACTTCCTCTCCTGCAGGCCAACTGAAATACCAGAAAATGACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR TCA 90 bp ACATTTTCTAGGTTGTATGCCTGTCGGATGTTGAGAGTGTCTCGAAGCATTAAAAGGGGTGTCTGCAGTTaGGGTAGAGATGGAGCTTCA +
Preference number: 2 (lower is better)
Translates to: TFSRLYACRMLRVSRSIKRGVCS*GRDGAS
Trigger: TGAAGCTCCATCTCTACCTCAACTGCAGACACCCCT...TTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGAAAATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR TCA 90 bp GCCAAAGTTTGGTCCCACTTGCTAATGCTGTTGGATTCAGCACTGAGTCCTTCACTCTCATTTCACTGCTaGACAAAATGTAGCCACTCA +
Preference number: 2 (lower is better)
Translates to: AKVWSHLLMLLDSALSPSLSFHC*TKCSHS
Trigger: TGAGTGGCTACATTTTGTTCAGCAGTGAAATGAGAG...TGAAGGACTCAGTGCTGAATCCAACAGCATTAGCAAGTGGGACCAAACTTTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCTTAAACCACCTCCATaGACACTTCAGTACTTTCTT +
Preference number: 2 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCLKPPP*TLQYFL
Trigger: AAGAAAGTACTGAAGTGTGCATGGAGGTGGTTTAAG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
3UTR-3UTR CCA 90 bp TTGCTGAGCACTATGGTACCTGCCCTTAATCCCAGCACTTGGGAGGAAGAGGCAAGAAAGTATTATTTCTaGTTGAGAATTCCAACCCTG +
Preference number: 2 (lower is better)
Translates to: LLSTMVPALNPSTWEEEARKYYF*LRIPTL
Trigger: CAGGGTTGGAATTCTCAACCAGAAATAATACTTTCT...TGCCTCTTCCTCCCAAGTGCTGGGATTAAGGGCAGGTACCATAGTGCTCAGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR-3UTR CCA 90 bp GAGCTCCCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATTTCATGTTCTGTTTCTTCTaGATGAATGAAGATAGGGCC +
Preference number: 2 (lower is better)
Translates to: ELPKRVVWVLGFNHSSHFMFCFF*MNEDRA
Trigger: GGCCCTATCTTCATTCATCCAGAAGAAACAGAACAT...GAAATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGGGAGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp ACATTTTCTAGGTTGTATGCCTGTCGGATGTTGAGAGTGTCTCGAAGCATTAAAGGGCATCTGCCATGGTaGTGTGTGCCCCTTTACTTT +
Preference number: 2 (lower is better)
Translates to: TFSRLYACRMLRVSRSIKGHLPW*CVPLYF
Trigger: AAAGTAAAGGGGCACACACCACCATGGCAGATGCCC...TTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGAAAATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR CAA 90 bp GTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCAGGCACAGCTaGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTAAA +
Preference number: 2 (lower is better)
Translates to: VYVGSLPCTAMCRHS*CPLTLFLGLSIMLK
Trigger: TTTAAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCACATAGCTGTGCAGGGTAGACTGCCTACATACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
3UTR-3UTR TCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCATACTTGATGAAAACTaGGATCCAGTGGTTGACTAC +
Preference number: 2 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTILDEN*DPVVDY
Trigger: GTAGTCAACCACTGGATCTCAGTTTTCATCAAGTAT...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR CAA 90 bp TCAGGTCTGGAAACAAACGTTCAAGCTGAAAGCTGTAACATCCATTaGGAGATTTTACACACCTGTCCCTTACCCACTCAGTTCTTCCTT +
Preference number: 2 (lower is better)
Translates to: SGLETNVQAESCNIH*EILHTCPLPTQFFL
Trigger: AAGGAAGAACTGAGTGGGTAAGGGACAGGTGTGTAAAATCTCCAAATGGATGTTACAGCTTTCAGCTTGAACGTTTGTTTCCAGACCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR-3UTR GCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCGCTCCACAACTCTTTaGTTCCACAGAAGAAACAGT +
Preference number: 2 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLRSTTL*FHRRNS
Trigger: ACTGTTTCTTCTGTGGAAGCAAAGAGTTGTGGAGCG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
3UTR-3UTR GCA 90 bp TCTAGGTTGTATGCCTGTCGGATGTTGAGAGTGTCTCGAAGCATTAAATCCCGTCATGCCTTCATATTCTaGTTTCTTGGCTGTTTCAAG +
Preference number: 2 (lower is better)
Translates to: SRLYACRMLRVSRSIKSRHAFIF*FLGCFK
Trigger: CTTGAAACAGCCAAGAAAGCAGAATATGAAGGCATG...ACGGGATTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CCA 90 bp ACATTTTCTAGGTTGTATGCCTGTCGGATGTTGAGAGTGTCTCGAAGCATTAAAAAAGTAGTGGCAACCTaGCTCACCATTGGACATCTC +
Preference number: 2 (lower is better)
Translates to: TFSRLYACRMLRVSRSIKKVVAT*LTIGHL
Trigger: GAGATGTCCAATGGTGAGCCAGGTTGCCACTACTTT...TTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGAAAATGT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR TCA 90 bp GCTGAACAAAATGTAGCCACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTCCATTTTTCACCAGCTaGATCCTCCCACAGTCTCTC +
Preference number: 2 (lower is better)
Translates to: AEQNVATHVDFSFRTFLLPFFTS*ILPQSL
Trigger: GAGAGACTGTGGGAGGATTCAGCTGGTGAAAAATGG...AAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGTGGCTACATTTTGTTCAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCGCTCCACAACTCTTTaGTTCCACAGAAGAAACAGT +
Preference number: 2 (lower is better)
Translates to: AHILQESLTIQMSNSAQSRSTTL*FHRRNS
Trigger: ACTGTTTCTTCTGTGGAAGCAAAGAGTTGTGGAGCG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
3UTR-3UTR GCA 90 bp GCTGAACAAAATGTAGCCACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTCCCTTTATCTGCATTTaGAAACACAGAGGCCACTCG +
Preference number: 2 (lower is better)
Translates to: AEQNVATHVDFSFRTFLLPFICI*KHRGHS
Trigger: CGAGTGGCCTCTGTGTTTGCAAATGCAGATAAAGGG...AAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGTGGCTACATTTTGTTCAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR GCA 90 bp CAAAATGTAGCCACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTTGCACTAGGGCCATAAAAATATaGAGCTCCATCTCGGACCCA +
Preference number: 2 (lower is better)
Translates to: QNVATHVDFSFRTFLLCTRAIKI*SSISDP
Trigger: TGGGTCCGAGATGGAGCTGCATATTTTTATGGCCCT...AGTGCAAAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGTGGCTACATTTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR GCA 90 bp ACATTTTCTAGGTTGTATGCCTGTCGGATGTTGAGAGTGTCTCGAAGCATTAAACATGCCTTCATATTCTaGTTTCTTGGCTGTTTCAAG +
Preference number: 2 (lower is better)
Translates to: TFSRLYACRMLRVSRSIKHAFIF*FLGCFK
Trigger: CTTGAAACAGCCAAGAAAGCAGAATATGAAGGCATG...TTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGAAAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR TCA 72 bp CCTGGTGCTGGAGTCCCTACCATGGGGGCTACTCCTTaGTTCATCACACCCGGTGGTGGGATGCCTGGGAGG +
Preference number: 3 (lower is better)
Translates to: PGAGVPTMGATP*FITPGGGMPGR
Trigger: CCTCCCAGGCATCCCACCACCGGGTGTGATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR GCA 72 bp GGGCTACTCCTTGATTCATCACACCCGGTGGTGGGATaGCTGGGAGGCCAGGCACACCTGGCGGAAGATGGT +
Preference number: 3 (lower is better)
Translates to: GLLLDSSHPVVG*LGGQAHLAEDG
Trigger: ACCATCTTCCGCCAGGTGTGCCTGGCCTCCCAGGCATCCCACCACCGGGTGTGATGAATCAAGGAGTAGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR CCA 72 bp TGGCTGCATGCTGCCCATGCTAACAAGGCCATCAACTaGGCCCTGCAAAGGTGGAAGGCCTGGCGGATAGCC +
Preference number: 3 (lower is better)
Translates to: WLHAAHANKAIN*ALQRWKAWRIA
Trigger: GGCTATCCGCCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGCATGCAGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR CCA 72 bp CATACGGACTTCCACCTGGTGCTGGAGTCCCTACCATaGGGGCTACTCCTTGATTCATCACACCCGGTGGTG +
Preference number: 3 (lower is better)
Translates to: HTDFHLVLESLP*GLLLDSSHPVV
Trigger: CACCACCGGGTGTGATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR GCA 72 bp CCGGGAAATGTTTGCTGCTGCCTGAGCACTGCACACTaGCTCAGTGCTTACGCTAGGGCCGTGTTGGAAAGA +
Preference number: 3 (lower is better)
Translates to: PGNVCCCLSTAH*LSAYARAVLER
Trigger: TCTTTCCAACACGGCCCTAGCGTAAGCACTGAGGCAGTGTGCAGTGCTCAGGCAGCAGCAAACATTTCCCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR CCA 72 bp AAGGCCATCAACTGGGCCCTGCAAAGGTGGAAGGCCTaGCGGATAGCCACCCATCATGCCTTCATATTCTGC +
Preference number: 3 (lower is better)
Translates to: KAINWALQRWKA*RIATHHAFIFC
Trigger: GCAGAATATGAAGGCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR CCA 72 bp ATGAGGACCAGGATATGGAGGTGGTGCCTGCTGCCCTaGAGGTCCCAAAACTCCTACCTGTTGTCCATACGG +
Preference number: 3 (lower is better)
Translates to: MRTRIWRWCLLP*RSQNSYLLSIR
Trigger: CCGTATGGACAACAGGTAGGAGTTTTGGGACCTCCAGGGCAGCAGGCACCACCTCCATATCCTGGTCCTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp GAGTGTCTCGAAGCATTAAATCCCGTAGGCGCCAGAGGGCATCTGCCATGGTGGCGGCTCTCCTGTTCTTaGGACAAATGGACATCCCGT +
Preference number: 3 (lower is better)
Translates to: ECLEALNPVGARGHLPWWRLSCS*DKWTSR
Trigger: ACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCG...CCACCATGGCAGATGCCCTCTGGCGCCTACGGGATTTAATGCTTCGAGACACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR TCA 72 bp GGGCATCTGCCATGGTGGTGTGTGCCCCTTTACTTTTaGGCCAGTGAGAAGGTAGGCGGCTCTCCTGTTCTT +
Preference number: 3 (lower is better)
Translates to: GHLPWWCVPLYF*ASEKVGGSPVL
Trigger: AAGAACAGGAGAGCCGCCTACCTTCTCACTGGCTCAAAAGTAAAGGGGCACACACCACCATGGCAGATGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR CCA 72 bp CTGCACACTGCCTCAGTGCTTACGCTAGGGCCGTGTTaGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGT +
Preference number: 3 (lower is better)
Translates to: LHTASVLTLGPC*KDRVVVAEHYG
Trigger: ACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCCCTAGCGTAAGCACTGAGGCAGTGTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR CCA 72 bp CAAAACTCCTACCTGTTGTCCATACGGACTTCCACCTaGTGCTGGAGTCCCTACCATGGGGGCTACTCCTTG +
Preference number: 3 (lower is better)
Translates to: QNSYLLSIRTST*CWSPYHGGYSL
Trigger: CAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp GGTAGGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCCCCCTTTATCTGCATTaGCAAACACAGAGGCCACTC +
Preference number: 3 (lower is better)
Translates to: GRRLSCSLDKWTSRLRAAPLYLH*QTQRPL
Trigger: GAGTGGCCTCTGTGTTTGCAAATGCAGATAAAGGGG...GGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCCTACC
54% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp GAGTGTCTCGAAGCATTAAATCCCGTAGGCGCCAGAGGGCATCTGCCATGGTGGTTCTTTGCACTGCCTTaGGCAGACTTTGGGGTAGAC +
Preference number: 3 (lower is better)
Translates to: ECLEALNPVGARGHLPWWFFALP*ADFGVD
Trigger: GTCTACCCCAAAGTCTGCCAAAGGCAGTGCAAAGAA...CCACCATGGCAGATGCCCTCTGGCGCCTACGGGATTTAATGCTTCGAGACACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR TCA 72 bp GCTAGGGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTaGGCACTATGGTACCTGCCCTTAATCCCAGCACTT +
Preference number: 3 (lower is better)
Translates to: ARAVLERQGCGC*ALWYLPLIPAL
Trigger: AAGTGCTGGGATTAAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCCCTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR GCA 72 bp AACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTaGTGGAGTCCCTACCATGGGGGCTACTCCTTGATT +
Preference number: 3 (lower is better)
Translates to: NSYLLSIRTSTW*WSPYHGGYSLI
Trigger: AATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR CCA 72 bp CTGAGCACTATGGTACCTGCCCTTAATCCCAGCACTTaGGAGGAAGAGGCAGAGTTTGAGACTAGCCTGGTC +
Preference number: 3 (lower is better)
Translates to: LSTMVPALNPST*EEEAEFETSLV
Trigger: GACCAGGCTAGTCTCAAACTCTGCCTCTTCCTCCCAAGTGCTGGGATTAAGGGCAGGTACCATAGTGCTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR CCA 72 bp TCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTaGAGTCCCTACCATGGGGGCTACTCCTTGATTCAT +
Preference number: 3 (lower is better)
Translates to: SYLLSIRTSTWC*SPYHGGYSLIH
Trigger: ATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTCCGCTCCACAACTCTTaGCTTCCACAGAAGAAACAG +
Preference number: 3 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALPLHNS*LPQKKQ
Trigger: CTGTTTCTTCTGTGGAAGCAAAGAGTTGTGGAGCGG...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR-3UTR CAA 90 bp GGTAGGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCTTTCTGGTATTTCAGTaGGCCTGCAGGAGAGGAAGT +
Preference number: 3 (lower is better)
Translates to: GRRLSCSLDKWTSRLRAAFLVFQ*ACRRGS
Trigger: ACTTCCTCTCCTGCAGGCCAACTGAAATACCAGAAA...GGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCCTACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR TCA 72 bp AGCACTGAGTCCTTCAATGTATTTCAGGTAGGCCTCTaGGTGGAGAAGCCTTTGGGTCTTTGGTGGGGGAGC +
Preference number: 3 (lower is better)
Translates to: STESFNVFQVGL*VEKPLGLWWGS
Trigger: GCTCCCCCACCAAAGACCCAAAGGCTTCTCCACTCAGAGGCCTACCTGAAATACATTGAAGGACTCAGTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR GCA 72 bp AAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTaGACAGCTATGTGCAGGCACAGCTTGTGTCCACTT +
Preference number: 3 (lower is better)
Translates to: KNPGHVYVGSLP*TAMCRHSLCPL
Trigger: AAGTGGACACAAGCTGTGCCTGCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
3UTR CCA 72 bp TTCTCAATTCTGCCCACACGAGGGCGCACCAAGCCGTaGGATTTGATGAAGACACAATCACCAACCTTCAGC +
Preference number: 3 (lower is better)
Translates to: FSILPTRGRTKP*DLMKTQSPTFS
Trigger: GCTGAAGGTTGGTGATTGTGTCTTCATCAAATCCCACGGCTTGGTGCGCCCTCGTGTGGGCAGAATTGAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp CCTGGAGGTCCCAAAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTTTCAGCCACATGTCATaGTACCGAAGCTGCTCAAAG +
Preference number: 3 (lower is better)
Translates to: PGGPKTPTCCPYGLPPGAFSHMS*YRSCSK
Trigger: CTTTGAGCAGCTTCGGTACAATGACATGTGGCTGAA...AGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTGGGACCTCCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp CTGCATGCTGCCCATGCTAACAAGGCCATCAACTGGGCCCTGCAAAGGTGGAAGAGGATCTCTCCATTTTaGCAGAGTTCATCACGAATT +
Preference number: 3 (lower is better)
Translates to: LHAAHANKAINWALQRWKRISPF*QSSSRI
Trigger: AATTCGTGATGAACTCTGCAAAAATGGAGAGATCCT...CTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGCATGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136237.8
3UTR CCA 72 bp GTCATTGTACCGAAGCTGCTCAAAGTAGTGGCAACCTaGCTCACCATTGGACATCTCCACAGGAACATCTTC +
Preference number: 3 (lower is better)
Translates to: VIVPKLLKVVAT*LTIGHLHRNIF
Trigger: GAAGATGTTCCTGTGGAGATGTCCAATGGTGAGCCAGGTTGCCACTACTTTGAGCAGCTTCGGTACAATGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp ATCACCAACCTTCAGCCACATGTCATTGTACCGAAGCTGCTCAAAGTAGTGGCACCGCTCCACAACTCTTaGCTTCCACAGAAGAAACAG +
Preference number: 3 (lower is better)
Translates to: ITNLQPHVIVPKLLKVVAPLHNS*LPQKKQ
Trigger: CTGTTTCTTCTGTGGAAGCAAAGAGTTGTGGAGCGG...TGCCACTACTTTGAGCAGCTTCGGTACAATGACATGTGGCTGAAGGTTGGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCAAGACAGGGTTGTGGTaGCTGAGCACTATGGTACCT +
Preference number: 3 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTKTGLW*LSTMVP
Trigger: AGGTACCATAGTGCTCAGCAACCACAACCCTGTCTT...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR GCA 72 bp CATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTaGAGGCACAGCTTGTGTCCACTTACACTCTTTCTT +
Preference number: 3 (lower is better)
Translates to: HVYVGSLPCTAM*RHSLCPLTLFL
Trigger: AAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCACATAGCTGTGCAGGGTAGACTGCCTACATACACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
3UTR-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCAAAAATTATCATCCTTaGTTCCTCCCTCCCACCCCA +
Preference number: 3 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCKNYHP*FLPPTP
Trigger: TGGGGTGGGAGGGAGGAACAAAGGATGATAATTTTT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
3UTR-3UTR CAA 90 bp ATCACCAACCTTCAGCCACATGTCATTGTACCGAAGCTGCTCAAAGTAGTGGCAATATGTGGTTGTAGATaGGCCTCCGCAGGTTCAACA +
Preference number: 3 (lower is better)
Translates to: ITNLQPHVIVPKLLKVVAICGCR*ASAGST
Trigger: TGTTGAACCTGCGGAGGCCAATCTACAACCACATAT...TGCCACTACTTTGAGCAGCTTCGGTACAATGACATGTGGCTGAAGGTTGGTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp CCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATTTCACTGCTATATGTGGTTGTAGATaGGCCTCCGCAGGTTCAACA +
Preference number: 3 (lower is better)
Translates to: PKRVVWVLGFNHSSHFTAICGCR*ASAGST
Trigger: TGTTGAACCTGCGGAGGCCAATCTACAACCACATAT...AGCAGTGAAATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp GTCTGTATTCTTCTCATCATCCCCTTTATCTGCATTTGCAAACACAGAGGCCACCCGCTCCACAACTCTTaGCTTCCACAGAAGAAACAG +
Preference number: 3 (lower is better)
Translates to: VCILLIIPFICICKHRGHPLHNS*LPQKKQ
Trigger: CTGTTTCTTCTGTGGAAGCAAAGAGTTGTGGAGCGG...GTGGCCTCTGTGTTTGCAAATGCAGATAAAGGGGATGATGAGAAGAATACAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp GCCAAAGTTTGGTCCCACTTGCTAATGCTGTTGGATTCAGCACTGAGTCCTTCAAACCTCTTCAAACCCTaGAACTTCTTCATCTGCTTG +
Preference number: 3 (lower is better)
Translates to: AKVWSHLLMLLDSALSPSNLFKP*NFFICL
Trigger: CAAGCAGATGAAGAAGTTCAAGGGTTTGAAGAGGTT...TGAAGGACTCAGTGCTGAATCCAACAGCATTAGCAAGTGGGACCAAACTTTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp ACATTTTCTAGGTTGTATGCCTGTCGGATGTTGAGAGTGTCTCGAAGCATTAAACGGCTCTCCTGTTCTTaGGACAAATGGACATCCCGT +
Preference number: 3 (lower is better)
Translates to: TFSRLYACRMLRVSRSIKRLSCS*DKWTSR
Trigger: ACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCG...TTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGAAAATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp CCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATTTCACTGCTTTGTCTTCAGCTCTATaGTCATCTGAGTTGTCTGTA +
Preference number: 3 (lower is better)
Translates to: PKRVVWVLGFNHSSHFTALSSAL*SSELSV
Trigger: TACAGACAACTCAGATGACAATAGAGCTGAAGACAA...AGCAGTGAAATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR TCA 72 bp ATTAAACATTTTCTAGGTTGTATGCCTGTCGGATGTTaGGAGTGTCTCGAAGCATTAAATCCCGTAGGCGCC +
Preference number: 3 (lower is better)
Translates to: IKHFLGCMPVGC*ECLEALNPVGA
Trigger: GGCGCCTACGGGATTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGAAAATGTTTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTAAAAATTATCATCCTTaGTTCCTCCCTCCCACCCCA +
Preference number: 3 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLKNYHP*FLPPTP
Trigger: TGGGGTGGGAGGGAGGAACAAAGGATGATAATTTTT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
3UTR-3UTR CAA 90 bp CCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATTTCACTGCTCTATTGTCATCTGAGTaGTCTGTATTCTTCTCATCA +
Preference number: 3 (lower is better)
Translates to: PKRVVWVLGFNHSSHFTALLSSE*SVFFSS
Trigger: TGATGAGAAGAATACAGACAACTCAGATGACAATAG...AGCAGTGAAATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR GCA 72 bp ACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTTaGACTGCCTTTGGCAGACTTTGGGGTAGACTGTGG +
Preference number: 3 (lower is better)
Translates to: THVDFSFRTFLL*TAFGRLWGRLW
Trigger: CCACAGTCTACCCCAAAGTCTGCCAAAGGCAGTGCAAAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCCGCTCCACAACTCTTaGCTTCCACAGAAGAAACAG +
Preference number: 3 (lower is better)
Translates to: AHILQESLTIQMSNSAQSPLHNS*LPQKKQ
Trigger: CTGTTTCTTCTGTGGAAGCAAAGAGTTGTGGAGCGG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
3UTR-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCCGCTCCACAACTCTTaGCTTCCACAGAAGAAACAG +
Preference number: 3 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFPLHNS*LPQKKQ
Trigger: CTGTTTCTTCTGTGGAAGCAAAGAGTTGTGGAGCGG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
3UTR TCA 72 bp TTTCCACATCGTTATGCAAGTGTTTTGTGGTATAGCTaGGTGCTGGAGAAAGAAGGATCTCTCCATTTTTGC +
Preference number: 3 (lower is better)
Translates to: FPHRYASVLWYS*VLEKEGSLHFC
Trigger: GCAAAAATGGAGAGATCCTTCTTTCTCCAGCACTCAGCTATACCACAAAACACTTGCATAACGATGTGGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCAAAAATTATCATCCTTaGTTCCTCCCTCCCACCCCA +
Preference number: 3 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFKNYHP*FLPPTP
Trigger: TGGGGTGGGAGGGAGGAACAAAGGATGATAATTTTT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
3UTR-3UTR CAA 90 bp GCTGAACAAAATGTAGCCACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTTTCAGCCACATGTCATaGTACCGAAGCTGCTCAAAG +
Preference number: 3 (lower is better)
Translates to: AEQNVATHVDFSFRTFLLFSHMS*YRSCSK
Trigger: CTTTGAGCAGCTTCGGTACAATGACATGTGGCTGAA...AAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGTGGCTACATTTTGTTCAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp TCATCTACAACTTTAGCAGAGAGTGAAAACCTCTTCAAACCCTTGAACTTCTTCTTGTCTTCAGCTCTATaGTCATCTGAGTTGTCTGTA +
Preference number: 3 (lower is better)
Translates to: SSTTLAESENLFKPLNFFLSSAL*SSELSV
Trigger: TACAGACAACTCAGATGACAATAGAGCTGAAGACAA...GAAGAAGTTCAAGGGTTTGAAGAGGTTTTCACTCTCTGCTAAAGTTGTAGATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR-3UTR CAA 90 bp CAAAATGTAGCCACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTTGCACTAATGGAATGTTTCATTaGGCCGATAAAACCAACAGC +
Preference number: 3 (lower is better)
Translates to: QNVATHVDFSFRTFLLCTNGMFH*ADKTNS
Trigger: GCTGTTGGTTTTATCGGCCAAATGAAACATTCCATT...AGTGCAAAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGTGGCTACATTTTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
3UTR GCA 72 bp TTTCTTGGGTTAAGTATTATGCTTAAACCACCTCCATaGACACTTCAGTACTTTCTTCAATGTTTTTCAAGG +
Preference number: 3 (lower is better)
Translates to: FLGLSIMLKPPP*TLQYFLQCFSR
Trigger: CCTTGAAAAACATTGAAGAAAGTACTGAAGTGTGCATGGAGGTGGTTTAAGCATAATACTTAACCCAAGAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TCAGGGCTTGCCTTAGGGACACAGCCCCCTGTGCTGGATTTTTACTGCCTCGGGGCGCCAGAGGGCATCTaGCATGGTGGTGTGTGCCCC +
Preference number: 4 (lower is better)
Translates to: SGLALGTQPPVLDFYCLGAPEGI*HGGVCP
Trigger: GGGGCACACACCACCATGGCAGATGCCCTCTGGCGC...CCCGAGGCAGTAAAAATCCAGCACAGGGGGCTGTGTCCCTAAGGCAAGCCCTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp TCAGGGCTTGCCTTAGGGACACAGCCCCCTGTGCTGGATTTTTACTGCCTCGGGTGGGCCCTGCAAAGGTaGAAGGCCTGGCGGATAGCC +
Preference number: 4 (lower is better)
Translates to: SGLALGTQPPVLDFYCLGWALQR*KAWRIA
Trigger: GGCTATCCGCCAGGCCTTCCACCTTTGCAGGGCCCA...CCCGAGGCAGTAAAAATCCAGCACAGGGGGCTGTGTCCCTAAGGCAAGCCCTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR CAA 72 bp ACCTGGTGCTGGAGTCCCTACCATGGGGGCTACTCCTaGATTCATCACACCCGGTGGTGGGATGCCTGGGAG +
Preference number: 4 (lower is better)
Translates to: TWCWSPYHGGYS*IHHTRWWDAWE
Trigger: CTCCCAGGCATCCCACCACCGGGTGTGATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp TCAGGGCTTGCCTTAGGGACACAGCCCCCTGTGCTGGATTTTTACTGCCTCGGGAGGATATGGAGGTGGTaGCTGCTGCCCTGGAGGTCC +
Preference number: 4 (lower is better)
Translates to: SGLALGTQPPVLDFYCLGRIWRW*LLPWRS
Trigger: GGACCTCCAGGGCAGCAGGCACCACCTCCATATCCT...CCCGAGGCAGTAAAAATCCAGCACAGGGGGCTGTGTCCCTAAGGCAAGCCCTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCACCCGGTGGTGGGATaGCTGGGAGGCCAGGCACAC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCHPVVG*LGGQAH
Trigger: GTGTGCCTGGCCTCCCAGGCATCCCACCACCGGGTG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp TCAGGGCTTGCCTTAGGGACACAGCCCCCTGTGCTGGATTTTTACTGCCTCGGGGTGCCCCTTTACTTTTaGGCCAGTGAGAAGGTAGGC +
Preference number: 4 (lower is better)
Translates to: SGLALGTQPPVLDFYCLGVPLYF*ASEKVG
Trigger: GCCTACCTTCTCACTGGCTCAAAAGTAAAGGGGCAC...CCCGAGGCAGTAAAAATCCAGCACAGGGGGCTGTGTCCCTAAGGCAAGCCCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp TTGCTGAGCACTATGGTACCTGCCCTTAATCCCAGCACTTGGGAGGAAGAGGCAGGAGGTGGTGCCTGCTaGCCTGGAGGTCCCAAAACT +
Preference number: 4 (lower is better)
Translates to: LLSTMVPALNPSTWEEEAGGGAC*PGGPKT
Trigger: AGTTTTGGGACCTCCAGGGCAGCAGGCACCACCTCC...TGCCTCTTCCTCCCAAGTGCTGGGATTAAGGGCAGGTACCATAGTGCTCAGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGCGCCAGAGGGCATCTaGCATGGTGGTGTGTGCCCC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCAPEGI*HGGVCP
Trigger: GGGGCACACACCACCATGGCAGATGCCCTCTGGCGC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TCAGGGCTTGCCTTAGGGACACAGCCCCCTGTGCTGGATTTTTACTGCCTCGGGGGGCGCACCAAGCCGTaGGATTTGATGAAGACACAA +
Preference number: 4 (lower is better)
Translates to: SGLALGTQPPVLDFYCLGGRTKP*DLMKTQ
Trigger: TTGTGTCTTCATCAAATCCCACGGCTTGGTGCGCCC...CCCGAGGCAGTAAAAATCCAGCACAGGGGGCTGTGTCCCTAAGGCAAGCCCTGA
57% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp GGTAGGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCTCTCCTTTTCCTGCTTaGGCCTGGTGTAGGCACAGA +
Preference number: 4 (lower is better)
Translates to: GRRLSCSLDKWTSRLRAASPFPA*AWCRHR
Trigger: TCTGTGCCTACACCAGGCCCAAGCAGGAAAAGGAGA...GGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCCTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp GCTGCCCATGCTAACAAGGCCATCAACTGGGCCCTGCAAAGGTGGAAGGCCTGGGCATCCTTGAATACTTaGGACCCAGGCTCATTGTAT +
Preference number: 4 (lower is better)
Translates to: AAHANKAINWALQRWKAWASLNT*DPGSLY
Trigger: ATACAATGAGCCTGGGTCTCAAGTATTCAAGGATGC...CCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp GCTGCCCATGCTAACAAGGCCATCAACTGGGCCCTGCAAAGGTGGAAGGCCTGGTTTGCCTGCATGACTTaGTGCAGTTTTAGAACTCGC +
Preference number: 4 (lower is better)
Translates to: AAHANKAINWALQRWKAWFACMT*CSFRTR
Trigger: GCGAGTTCTAAAACTGCAGCAAGTCATGCAGGCAAA...CCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp GGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCAAAGGATCGCAAAGTCTTCTaGCTGAACCTGGCTCTCGAG +
Preference number: 4 (lower is better)
Translates to: GGSPVLWTNGHPVFELPKDRKVF*LNLALE
Trigger: CTCGAGAGCCAGGTTCAGGCAGAAGACTTTGCGATC...CTTTGGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCGGACTTCCACCTGGTaGTGGAGTCCCTACCATGGG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCRTSTW*WSPYHG
Trigger: CCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCAGGATATGGAGGTGGTaGCTGCTGCCCTGGAGGTCC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCRIWRW*LLPWRS
Trigger: GGACCTCCAGGGCAGCAGGCACCACCTCCATATCCT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCAAAGTTTCCTGCTTGGGCCTaGTGTAGGCACAGAATGGTG +
Preference number: 4 (lower is better)
Translates to: GGSPVLWTNGHPVFELPKFPAWA*CRHRMV
Trigger: CACCATTCTGTGCCTACACCAGGCCCAAGCAGGAAA...CTTTGGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTCTGGAGTCCCTACCATaGGGGCTACTCCTTGATTCA +
Preference number: 4 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALLESLP*GLLLDS
Trigger: TGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAG...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCACTTCCACCTGGTGCTaGAGTCCCTACCATGGGGGC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCTSTWC*SPYHGG
Trigger: GCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp TCAGGGCTTGCCTTAGGGACACAGCCCCCTGTGCTGGATTTTTACTGCCTCGGGCCATTCTGTATCCTCTaGGCAATGGTCTTGAGATCT +
Preference number: 4 (lower is better)
Translates to: SGLALGTQPPVLDFYCLGPFCIL*AMVLRS
Trigger: AGATCTCAAGACCATTGCTCAGAGGATACAGAATGG...CCCGAGGCAGTAAAAATCCAGCACAGGGGGCTGTGTCCCTAAGGCAAGCCCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR TCA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTAGAAAGGTTCAGCTATaGGCTGCCCTTGGTGATTCC +
Preference number: 4 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALRKVQL*AALGDS
Trigger: GGAATCACCAAGGGCAGCTCATAGCTGAACCTTTCT...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR TCA 90 bp TTGCTGAGCACTATGGTACCTGCCCTTAATCCCAGCACTTGGGAGGAAGAGGCATTTCAGGTAGGCCTCTaGGTGGAGAAGCCTTTGGGT +
Preference number: 4 (lower is better)
Translates to: LLSTMVPALNPSTWEEEAFQVGL*VEKPLG
Trigger: ACCCAAAGGCTTCTCCACTCAGAGGCCTACCTGAAA...TGCCTCTTCCTCCCAAGTGCTGGGATTAAGGGCAGGTACCATAGTGCTCAGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp TCTGCATTTGCAAACACAGAGGCCACTCGGACCACAGGCAAAGGCACATCCCGAGTAGGCACAGAATGGTaGCCGTCATCAAAGTCTCCA +
Preference number: 4 (lower is better)
Translates to: SAFANTEATRTTGKGTSRVGTEW*PSSKSP
Trigger: TGGAGACTTTGATGACGGGCACCATTCTGTGCCTAC...TCGGGATGTGCCTTTGCCTGTGGTCCGAGTGGCCTCTGTGTTTGCAAATGCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp GCTGCCCATGCTAACAAGGCCATCAACTGGGCCCTGCAAAGGTGGAAGGCCTGGTTTCTTCACCAAGGCTaGTTTTATTGTGCGAAGGAC +
Preference number: 4 (lower is better)
Translates to: AAHANKAINWALQRWKAWFLHQG*FYCAKD
Trigger: GTCCTTCGCACAATAAAAGCAGCCTTGGTGAAGAAA...CCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp TCAGGGCTTGCCTTAGGGACACAGCCCCCTGTGCTGGATTTTTACTGCCTCGGGCCGGTTCATCCTTCTTaGCCGTTCCAATACTTCAAA +
Preference number: 4 (lower is better)
Translates to: SGLALGTQPPVLDFYCLGPVHPS*PFQYFK
Trigger: TTTGAAGTATTGGAACGGGCAAGAAGGATGAACCGG...CCCGAGGCAGTAAAAATCCAGCACAGGGGGCTGTGTCCCTAAGGCAAGCCCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCCGGACTTCCACCTGGTaGTGGAGTCCCTACCATGGG +
Preference number: 4 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTRTSTW*WSPYHG
Trigger: CCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCG...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp GGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCAAAGTGCTGGAAGGAGAGGTaGCTCTTCTTCTCTTGGAAC +
Preference number: 4 (lower is better)
Translates to: GGSPVLWTNGHPVFELPKCWKER*LFFSWN
Trigger: GTTCCAAGAGAAGAAGAGCCACCTCTCCTTCCAGCA...CTTTGGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp TTGCTGAGCACTATGGTACCTGCCCTTAATCCCAGCACTTGGGAGGAAGAGGCATCTCCTTTTCCTGCTTaGGCCTGGTGTAGGCACAGA +
Preference number: 4 (lower is better)
Translates to: LLSTMVPALNPSTWEEEASPFPA*AWCRHR
Trigger: TCTGTGCCTACACCAGGCCCAAGCAGGAAAAGGAGA...TGCCTCTTCCTCCCAAGTGCTGGGATTAAGGGCAGGTACCATAGTGCTCAGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGAGTGGAGAAGCCTTTaGGTCTTTGGTGGGGGAGCC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCEWRSL*VFGGGA
Trigger: GGCTCCCCCACCAAAGACCCAAAGGCTTCTCCACTC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTCGAGCTGCCAAAGTTTaGTCCCACTTGCTAATGCTG +
Preference number: 4 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALRAAKV*SHLLML
Trigger: CAGCATTAGCAAGTGGGACCAAACTTTGGCAGCTCG...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR TCA 90 bp GCTGCCCATGCTAACAAGGCCATCAACTGGGCCCTGCAAAGGTGGAAGGCCTGGTCAAACATATGCTCCTaGAATAAATCAAGTCGCCGA +
Preference number: 4 (lower is better)
Translates to: AAHANKAINWALQRWKAWSNICS*NKSSRR
Trigger: TCGGCGACTTGATTTATTTCAGGAGCATATGTTTGA...CCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTGGTGAGGGTTCCTTCTaGGGAATGATTGGTTTTCTG +
Preference number: 4 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALGEGSF*GMIGFL
Trigger: CAGAAAACCAATCATTCCTCAGAAGGAACCCTCACC...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCATGGGGGCTACTCCTTaGTTCATCACACCCGGTGGT +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCMGATP*FITPGG
Trigger: ACCACCGGGTGTGATGAATCAAGGAGTAGCCCCCAT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp CCTGGAGGTCCCAAAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTATGGCTTCAAGAAGCTaGTCCAGGATCTCCTTCAGA +
Preference number: 4 (lower is better)
Translates to: PGGPKTPTCCPYGLPPGAMASRS*SRISFR
Trigger: TCTGAAGGAGATCCTGGAGCAGCTTCTTGAAGCCAT...AGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTGGGACCTCCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTGGAAGTGATGCTCTCTaGTTCAGATTCCCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALGSDAL*FRFPFF
Trigger: GAAGAAGGGGAATCTGAAGCAGAGAGCATCACTTCC...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTAAGCTCCTTCTTCTTTaGCTGCATGACTTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALKLLLL*LHDLLQ
Trigger: CTGCAGCAAGTCATGCAGGCAAAGAAGAAGGAGCTT...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp TTGCTGAGCACTATGGTACCTGCCCTTAATCCCAGCACTTGGGAGGAAGAGGCATGGCTGAGGAGATCATaGTGTCTCCGTCCTCAATGT +
Preference number: 4 (lower is better)
Translates to: LLSTMVPALNPSTWEEEAWLRRS*CLRPQC
Trigger: ACATTGAGGACGGAGACAGCATGATCTCCTCAGCCA...TGCCTCTTCCTCCCAAGTGCTGGGATTAAGGGCAGGTACCATAGTGCTCAGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp GCTGCCCATGCTAACAAGGCCATCAACTGGGCCCTGCAAAGGTGGAAGGCCTGGGTCTTGGTACTTGTTTaGCATCATGTGACTTCGAAT +
Preference number: 4 (lower is better)
Translates to: AAHANKAINWALQRWKAWVLVLV*HHVTSN
Trigger: ATTCGAAGTCACATGATGGCAAACAAGTACCAAGAC...CCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp TCCAGTCCAGCCAGGGTTGGTAGTAGGACCATGTCTCAAGAAAAGAAAGAAAGACCATCAACTGGGCCCTaGAAAGGTGGAAGGCCTGGC +
Preference number: 4 (lower is better)
Translates to: SSPARVGSRTMSQEKKERPSTGP*KGGRPG
Trigger: GCCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGG...TCTTTCTTTCTTTTCTTGAGACATGGTCCTACTACCAACCCTGGCTGGACTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp TTGCTGAGCACTATGGTACCTGCCCTTAATCCCAGCACTTGGGAGGAAGAGGCAGACAAGCGACCCCCTTaGACTGCTCTTTTATTACGG +
Preference number: 4 (lower is better)
Translates to: LLSTMVPALNPSTWEEEADKRPP*TALLLR
Trigger: CCGTAATAAAAGAGCAGTCCAAGGGGGTCGCTTGTC...TGCCTCTTCCTCCCAAGTGCTGGGATTAAGGGCAGGTACCATAGTGCTCAGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp GCTGCCCATGCTAACAAGGCCATCAACTGGGCCCTGCAAAGGTGGAAGGCCTGGGAACTCGCTTATAGATaGCTGAATTGGGAACGTTAT +
Preference number: 4 (lower is better)
Translates to: AAHANKAINWALQRWKAWELAYR*LNWERY
Trigger: ATAACGTTCCCAATTCAGCCATCTATAAGCGAGTTC...CCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp AGCATTAAATCCCGTAGGCGCCAGAGGGCATCTGCCATGGTGGTGTGTGCCCCTGTAGATCAAAGACTCTaGTTCATTGTAGGTACAGGC +
Preference number: 4 (lower is better)
Translates to: SIKSRRRQRASAMVVCAPVDQRL*FIVGTG
Trigger: GCCTGTACCTACAATGAACCAGAGTCTTTGATCTAC...AGGGGCACACACCACCATGGCAGATGCCCTCTGGCGCCTACGGGATTTAATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCTGGTGCCTGCTGCCCTaGAGGTCCCAAAACTCCTAC +
Preference number: 4 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTWCLLP*RSQNSY
Trigger: GTAGGAGTTTTGGGACCTCCAGGGCAGCAGGCACCA...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGGGGAGCCACAAACATaGGCGTTGTTGGCTGCTGTA +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCGEPQT*ALLAAV
Trigger: TACAGCAGCCAACAACGCCCATGTTTGTGGCTCCCC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GAGTGTCTCGAAGCATTAAATCCCGTAGGCGCCAGAGGGCATCTGCCATGGTGGTCGCTTATAGATGGCTaGATTGGGAACGTTATAACG +
Preference number: 4 (lower is better)
Translates to: ECLEALNPVGARGHLPWWSLIDG*IGNVIT
Trigger: CGTTATAACGTTCCCAATTCAGCCATCTATAAGCGA...CCACCATGGCAGATGCCCTCTGGCGCCTACGGGATTTAATGCTTCGAGACACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp CTGCATGCTGCCCATGCTAACAAGGCCATCAACTGGGCCCTGCAAAGGTGGAAGCAAAAAGGTTATGGATaGGCTCTTGAATCAGCAACG +
Preference number: 4 (lower is better)
Translates to: LHAAHANKAINWALQRWKQKGYG*ALESAT
Trigger: CGTTGCTGATTCAAGAGCTCATCCATAACCTTTTTG...CTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGCATGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTGTTTTGTGGTATAGCTaGGTGCTGGAGAAAGAAGGA +
Preference number: 4 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALVLWYS*VLEKEG
Trigger: TCCTTCTTTCTCCAGCACTCAGCTATACCACAAAAC...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR TCA 90 bp TCAGGGCTTGCCTTAGGGACACAGCCCCCTGTGCTGGATTTTTACTGCCTCGGGAGCTCTATTGTCATCTaGGTTGTCTGTATTCTTCTC +
Preference number: 4 (lower is better)
Translates to: SGLALGTQPPVLDFYCLGSSIVI*VVCILL
Trigger: GAGAAGAATACAGACAACTCAGATGACAATAGAGCT...CCCGAGGCAGTAAAAATCCAGCACAGGGGGCTGTGTCCCTAAGGCAAGCCCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTTACTTTTGAGCCAGTaGGAAGGTAGGCGGCTCTCC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCLLLSQ*EGRRLS
Trigger: GGAGAGCCGCCTACCTTCTCACTGGCTCAAAAGTAA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGTGCCCCTTTACTTTTaGGCCAGTGAGAAGGTAGGC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCVPLYF*ASEKVG
Trigger: GCCTACCTTCTCACTGGCTCAAAAGTAAAGGGGCAC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp ACAGAGGCCACTCGGACCACAGGCAAAGGCACATCCCGAGGGACAAATCTAACTGCCTGCATGACTTGCTaGAGTTTTAGAACTCGCTTA +
Preference number: 4 (lower is better)
Translates to: TEATRTTGKGTSRGTNLTACMTC*SFRTRL
Trigger: TAAGCGAGTTCTAAAACTGCAGCAAGTCATGCAGGC...AGTTAGATTTGTCCCTCGGGATGTGCCTTTGCCTGTGGTCCGAGTGGCCTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp TTCTCAATTCTGCCCACACGAGGGCGCACCAAGCCGTGGGATTTGATGAAGACAAAGCTCCTTCTTCTTTaGCTGCATGACTTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: FSILPTRGRTKPWDLMKTKLLLL*LHDLLQ
Trigger: CTGCAGCAAGTCATGCAGGCAAAGAAGAAGGAGCTT...TGTCTTCATCAAATCCCACGGCTTGGTGCGCCCTCGTGTGGGCAGAATTGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGATCGCAAAGTCTTCTaGCTGAACCTGGCTCTCGAG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCDRKVF*LNLALE
Trigger: CTCGAGAGCCAGGTTCAGGCAGAAGACTTTGCGATC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TTGCTGAGCACTATGGTACCTGCCCTTAATCCCAGCACTTGGGAGGAAGAGGCAAGGGCCATAAAAATATaGAGCTCCATCTCGGACCCA +
Preference number: 4 (lower is better)
Translates to: LLSTMVPALNPSTWEEEARAIKI*SSISDP
Trigger: TGGGTCCGAGATGGAGCTGCATATTTTTATGGCCCT...TGCCTCTTCCTCCCAAGTGCTGGGATTAAGGGCAGGTACCATAGTGCTCAGCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp TCAGGGCTTGCCTTAGGGACACAGCCCCCTGTGCTGGATTTTTACTGCCTCGGGCATGCCTTCATATTCTaGTTTCTTGGCTGTTTCAAG +
Preference number: 4 (lower is better)
Translates to: SGLALGTQPPVLDFYCLGHAFIF*FLGCFK
Trigger: CTTGAAACAGCCAAGAAAGCAGAATATGAAGGCATG...CCCGAGGCAGTAAAAATCCAGCACAGGGGGCTGTGTCCCTAAGGCAAGCCCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTTTCCTGCTTGGGCCTaGTGTAGGCACAGAATGGTG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCFPAWA*CRHRMV
Trigger: CACCATTCTGTGCCTACACCAGGCCCAAGCAGGAAA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTCTCCTTTTCCTGCTTaGGCCTGGTGTAGGCACAGA +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCSPFPA*AWCRHR
Trigger: TCTGTGCCTACACCAGGCCCAAGCAGGAAAAGGAGA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TCTGCATTTGCAAACACAGAGGCCACTCGGACCACAGGCAAAGGCACATCCCGATTGTGGCTACAACTATaGCTTCAAGAAGCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: SAFANTEATRTTGKGTSRLWLQL*LQEAAP
Trigger: TGGAGCAGCTTCTTGAAGCCATAGTTGTAGCCACAA...TCGGGATGTGCCTTTGCCTGTGGTCCGAGTGGCCTCTGTGTTTGCAAATGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGGGCGCACCAAGCCGTaGGATTTGATGAAGACACAA +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCGRTKP*DLMKTQ
Trigger: TTGTGTCTTCATCAAATCCCACGGCTTGGTGCGCCC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCTTTGGGGTAGACTGTaGGGGTGTATAGGGCATGAG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCLWGRL*GCIGHE
Trigger: CTCATGCCCTATACACCCCCACAGTCTACCCCAAAG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCTGGAGTCCCTACCATaGGGGCTACTCCTTGATTCA +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCLESLP*GLLLDS
Trigger: TGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCATACGGACTTCCACCTaGTGCTGGAGTCCCTACCAT +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCIRTST*CWSPYH
Trigger: ATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTAT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCGGGGAGCCACAAACATaGGCGTTGTTGGCTGCTGTA +
Preference number: 4 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTGEPQT*ALLAAV
Trigger: TACAGCAGCCAACAACGCCCATGTTTGTGGCTCCCC...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGGGCATCTGCCATGGTaGTGTGTGCCCCTTTACTTT +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCGHLPW*CVPLYF
Trigger: AAAGTAAAGGGGCACACACCACCATGGCAGATGCCC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTGGGCCCTGCAAAGGTaGAAGGCCTGGCGGATAGCC +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLWALQR*KAWRIA
Trigger: GGCTATCCGCCAGGCCTTCCACCTTTGCAGGGCCCA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCAAAGGTGGAAGGCCTGGCGGATAGCCACCCATCATGCCTTCATATTCTGCTTCCATTCTGTATCCTCTaGGCAATGGTCTTGAGATCT +
Preference number: 4 (lower is better)
Translates to: AKVEGLADSHPSCLHILLPFCIL*AMVLRS
Trigger: AGATCTCAAGACCATTGCTCAGAGGATACAGAATGG...AAGCAGAATATGAAGGCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp TCTGCATTTGCAAACACAGAGGCCACTCGGACCACAGGCAAAGGCACATCCCGACAAAAAGGTTATGGATaGGCTCTTGAATCAGCAACG +
Preference number: 4 (lower is better)
Translates to: SAFANTEATRTTGKGTSRQKGYG*ALESAT
Trigger: CGTTGCTGATTCAAGAGCTCATCCATAACCTTTTTG...TCGGGATGTGCCTTTGCCTGTGGTCCGAGTGGCCTCTGTGTTTGCAAATGCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGTGTCAACTGCTGATTaGGCATCCCCATTGGTGTTG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCVSTAD*ASPLVL
Trigger: CAACACCAATGGGGATGCTCAATCAGCAGTTGACAC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCACAGGTGTCAACTGCTaGTTGAGCATCCCCATTGGT +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCTGVNC*LSIPIG
Trigger: ACCAATGGGGATGCTCAATCAGCAGTTGACACCTGT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCAGGCTGCTTTTATTGTaGGAAGGACCTGTCAGCCTG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCRLLLL*EGPVSL
Trigger: CAGGCTGACAGGTCCTTCGCACAATAAAAGCAGCCT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TTGCTGAGCACTATGGTACCTGCCCTTAATCCCAGCACTTGGGAGGAAGAGGCATTTGCCTGCATGACTTaGTGCAGTTTTAGAACTCGC +
Preference number: 4 (lower is better)
Translates to: LLSTMVPALNPSTWEEEAFACMT*CSFRTR
Trigger: GCGAGTTCTAAAACTGCAGCAAGTCATGCAGGCAAA...TGCCTCTTCCTCCCAAGTGCTGGGATTAAGGGCAGGTACCATAGTGCTCAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp GAGCTCCCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATTTCTGGCTGAGGAGATCATaGTGTCTCCGTCCTCAATGT +
Preference number: 4 (lower is better)
Translates to: ELPKRVVWVLGFNHSSHFWLRRS*CLRPQC
Trigger: ACATTGAGGACGGAGACAGCATGATCTCCTCAGCCA...GAAATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGGGAGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp CCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATTTCACTGCTGATCGCAAAGTCTTCTaGCTGAACCTGGCTCTCGAG +
Preference number: 4 (lower is better)
Translates to: PKRVVWVLGFNHSSHFTADRKVF*LNLALE
Trigger: CTCGAGAGCCAGGTTCAGGCAGAAGACTTTGCGATC...AGCAGTGAAATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp AGCATTAAATCCCGTAGGCGCCAGAGGGCATCTGCCATGGTGGTGTGTGCCCCTCATTCCTTCTTCACCTaGATATTTGTCATTTCGGAT +
Preference number: 4 (lower is better)
Translates to: SIKSRRRQRASAMVVCAPHSFFT*IFVISD
Trigger: ATCCGAAATGACAAATATGCAGGTGAAGAAGGAATG...AGGGGCACACACCACCATGGCAGATGCCCTCTGGCGCCTACGGGATTTAATGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTAGGATATGGAGGTGGTaGCTGCTGCCCTGGAGGTCC +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLRIWRW*LLPWRS
Trigger: GGACCTCCAGGGCAGCAGGCACCACCTCCATATCCT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTGCCATGGTGGTGTGTaGCCCTTTACTTTTGAGCCA +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCCHGGV*PFTFEP
Trigger: TGGCTCAAAAGTAAAGGGGCACACACCACCATGGCA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCCATCAACTGGGCCCTaGAAAGGTGGAAGGCCTGGC +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLPSTGP*KGGRPG
Trigger: GCCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCACCCGGTGGTGGGATaGCTGGGAGGCCAGGCACAC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSHPVVG*LGGQAH
Trigger: GTGTGCCTGGCCTCCCAGGCATCCCACCACCGGGTG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTGCTGGAAGGAGAGGTaGCTCTTCTTCTCTTGGAAC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCCWKER*LFFSWN
Trigger: GTTCCAAGAGAAGAAGAGCCACCTCTCCTTCCAGCA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TTAAAGCTGCAGTCCTGGCTGTATGTACGATGTAAGCCTGAGAGGCCTGTAGTATCTCCTTTTCCTGCTTaGGCCTGGTGTAGGCACAGA +
Preference number: 4 (lower is better)
Translates to: LKLQSWLYVRCKPERPVVSPFPA*AWCRHR
Trigger: TCTGTGCCTACACCAGGCCCAAGCAGGAAAAGGAGA...TACTACAGGCCTCTCAGGCTTACATCGTACATACAGCCAGGACTGCAGCTTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp ACCGAAGCTGCTCAAAGTAGTGGCAACCTGGCTCACCATTGGACATCTCCACAGTTGATTTCTCCGCTTTaGAGCCCTAATGAACAGCTC +
Preference number: 4 (lower is better)
Translates to: TEAAQSSGNLAHHWTSPQLISPL*SPNEQL
Trigger: GAGCTGTTCATTAGGGCTCCAAAGCGGAGAAATCAA...CTGTGGAGATGTCCAATGGTGAGCCAGGTTGCCACTACTTTGAGCAGCTTCGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp TCAGGGCTTGCCTTAGGGACACAGCCCCCTGTGCTGGATTTTTACTGCCTCGGGTTTTCATCAAGTCAATaGGCTGAGAAACCACTTCAT +
Preference number: 4 (lower is better)
Translates to: SGLALGTQPPVLDFYCLGFSSSQ*AEKPLH
Trigger: ATGAAGTGGTTTCTCAGCCCATTGACTTGATGAAAA...CCCGAGGCAGTAAAAATCCAGCACAGGGGGCTGTGTCCCTAAGGCAAGCCCTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp AGCATTAAATCCCGTAGGCGCCAGAGGGCATCTGCCATGGTGGTGTGTGCCCCTTTTTCATCAAGTCAATaGGCTGAGAAACCACTTCAT +
Preference number: 4 (lower is better)
Translates to: SIKSRRRQRASAMVVCAPFSSSQ*AEKPLH
Trigger: ATGAAGTGGTTTCTCAGCCCATTGACTTGATGAAAA...AGGGGCACACACCACCATGGCAGATGCCCTCTGGCGCCTACGGGATTTAATGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp ACAGAGGCCACTCGGACCACAGGCAAAGGCACATCCCGAGGGACAAATCTAACTGTCCTGATGGATTTGTaGCTACAACTATGGCTTCAA +
Preference number: 4 (lower is better)
Translates to: TEATRTTGKGTSRGTNLTVLMDL*LQLWLQ
Trigger: TTGAAGCCATAGTTGTAGCCACAAATCCATCAGGAC...AGTTAGATTTGTCCCTCGGGATGTGCCTTTGCCTGTGGTCCGAGTGGCCTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTGTAGATCAAAGACTCTaGTTCATTGTAGGTACAGGC +
Preference number: 4 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALVDQRL*FIVGTG
Trigger: GCCTGTACCTACAATGAACCAGAGTCTTTGATCTAC...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp TCCAGTCCAGCCAGGGTTGGTAGTAGGACCATGTCTCAAGAAAAGAAAGAAAGAGCCTTTGGCAGACTTTaGGGTAGACTGTGGGGGTGT +
Preference number: 4 (lower is better)
Translates to: SSPARVGSRTMSQEKKERAFGRL*GRLWGC
Trigger: ACACCCCCACAGTCTACCCCAAAGTCTGCCAAAGGC...TCTTTCTTTCTTTTCTTGAGACATGGTCCTACTACCAACCCTGGCTGGACTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGGCTCTCCTGTTCTTTaGACAAATGGACATCCCGTC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCGSPVL*TNGHPV
Trigger: GACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCAACAAGGCCATCAACTaGGCCCTGCAAAGGTGGAAG +
Preference number: 4 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTNKAIN*ALQRWK
Trigger: CTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTT...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR CAA 72 bp ACATCCCGTCTTCGAGCTGCCAAAGTTTGGTCCCACTaGCTAATGCTGTTGGATTCAGCACTGAGTCCTTCA +
Preference number: 4 (lower is better)
Translates to: TSRLRAAKVWSH*LMLLDSALSPS
Trigger: TGAAGGACTCAGTGCTGAATCCAACAGCATTAGCAAGTGGGACCAAACTTTGGCAGCTCGAAGACGGGATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGTCCTCTTCACTCTCTaGTCCATACTGAAGTGCCAT +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCVLFTL*SILKCH
Trigger: ATGGCACTTCAGTATGGATCAGAGAGTGAAGAGGAC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GAGCTCCCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATTTCGTCCTCTTCACTCTCTaGTCCATACTGAAGTGCCAT +
Preference number: 4 (lower is better)
Translates to: ELPKRVVWVLGFNHSSHFVLFTL*SILKCH
Trigger: ATGGCACTTCAGTATGGATCAGAGAGTGAAGAGGAC...GAAATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGGGAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp CCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATTTCACTGCTAGAAAGGTTCAGCTATaGGCTGCCCTTGGTGATTCC +
Preference number: 4 (lower is better)
Translates to: PKRVVWVLGFNHSSHFTARKVQL*AALGDS
Trigger: GGAATCACCAAGGGCAGCTCATAGCTGAACCTTTCT...AGCAGTGAAATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp TCTGCATTTGCAAACACAGAGGCCACTCGGACCACAGGCAAAGGCACATCCCGACTGATGACTCATGACTaGCACAAAAAGGTTATGGAT +
Preference number: 4 (lower is better)
Translates to: SAFANTEATRTTGKGTSRLMTHD*HKKVMD
Trigger: ATCCATAACCTTTTTGTGTCAGTCATGAGTCATCAG...TCGGGATGTGCCTTTGCCTGTGGTCCGAGTGGCCTCTGTGTTTGCAAATGCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTTCAAACATATGCTCCTaGAATAAATCAAGTCGCCGA +
Preference number: 4 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALSNICS*NKSSRR
Trigger: TCGGCGACTTGATTTATTTCAGGAGCATATGTTTGA...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCAGGGACAAATCTAACTaGACTGATGGGCATGGTCCA +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCRDKSN*TDGHGP
Trigger: TGGACCATGCCCATCAGTTCAGTTAGATTTGTCCCT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCGTAGGCACAGAATGGTaGCCGTCATCAAAGTCTCCA +
Preference number: 4 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTVGTEW*PSSKSP
Trigger: TGGAGACTTTGATGACGGGCACCATTCTGTGCCTAC...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp GGTAGGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCCTTATAGTAGGCCTTTaGATTGTTAAAAAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: GRRLSCSLDKWTSRLRAALIVGL*IVKKQL
Trigger: CAGCTGCTTTTTAACAATGCAAAGGCCTACTATAAG...GGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCCTACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCATGGCTTCAAGAAGCTaGTCCAGGATCTCCTTCAGA +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCMASRS*SRISFR
Trigger: TCTGAAGGAGATCCTGGAGCAGCTTCTTGAAGCCAT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGGAAGTGATGCTCTCTaGTTCAGATTCCCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCGSDAL*FRFPFF
Trigger: GAAGAAGGGGAATCTGAAGCAGAGAGCATCACTTCC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCAAGCTCCTTCTTCTTTaGCTGCATGACTTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCKLLLL*LHDLLQ
Trigger: CTGCAGCAAGTCATGCAGGCAAAGAAGAAGGAGCTT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp ACAGAGGCCACTCGGACCACAGGCAAAGGCACATCCCGAGGGACAAATCTAACTGTCTTGGTACTTGTTTaGCATCATGTGACTTCGAAT +
Preference number: 4 (lower is better)
Translates to: TEATRTTGKGTSRGTNLTVLVLV*HHVTSN
Trigger: ATTCGAAGTCACATGATGGCAAACAAGTACCAAGAC...AGTTAGATTTGTCCCTCGGGATGTGCCTTTGCCTGTGGTCCGAGTGGCCTCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTTTCCTTCTTTGCACTaGCTTTGGCAGACTTTGGGG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCFPSLH*LWQTLG
Trigger: CCCCAAAGTCTGCCAAAGGCAGTGCAAAGAAGGAAA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTATGGAGGTGGTGCCTaGTGCCCTGGAGGTCCCAAA +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLYGGGA*CPGGPK
Trigger: TTTGGGACCTCCAGGGCAGCAGGCACCACCTCCATA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGCGCCAGAGGGCATCTaGCATGGTGGTGTGTGCCCC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFAPEGI*HGGVCP
Trigger: GGGGCACACACCACCATGGCAGATGCCCTCTGGCGC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGCGCCAGAGGGCATCTaGCATGGTGGTGTGTGCCCC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSAPEGI*HGGVCP
Trigger: GGGGCACACACCACCATGGCAGATGCCCTCTGGCGC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCAAAGGTGGAAGGCCTGGCGGATAGCCACCCATCATGCCTTCATATTCTGCTTTCGGTTCATCCTTCTTaGCCGTTCCAATACTTCAAA +
Preference number: 4 (lower is better)
Translates to: AKVEGLADSHPSCLHILLSVHPS*PFQYFK
Trigger: TTTGAAGTATTGGAACGGGCAAGAAGGATGAACCGA...AAGCAGAATATGAAGGCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp CCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATTTCACTGCTGGTGTAGGCACAGAATaGTGCCCGTCATCAAAGTCT +
Preference number: 4 (lower is better)
Translates to: PKRVVWVLGFNHSSHFTAGVGTE*CPSSKS
Trigger: AGACTTTGATGACGGGCACCATTCTGTGCCTACACC...AGCAGTGAAATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp TCCAGTCCAGCCAGGGTTGGTAGTAGGACCATGTCTCAAGAAAAGAAAGAAAGATTTCCTGCTTGGGCCTaGTGTAGGCACAGAATGGTG +
Preference number: 4 (lower is better)
Translates to: SSPARVGSRTMSQEKKERFPAWA*CRHRMV
Trigger: CACCATTCTGTGCCTACACCAGGCCCAAGCAGGAAA...TCTTTCTTTCTTTTCTTGAGACATGGTCCTACTACCAACCCTGGCTGGACTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp ACCGAAGCTGCTCAAAGTAGTGGCAACCTGGCTCACCATTGGACATCTCCACAGCTACAGTTGGAAGATTaGACAGTCTTCTCCTTTTCC +
Preference number: 4 (lower is better)
Translates to: TEAAQSSGNLAHHWTSPQLQLED*TVFSFS
Trigger: GGAAAAGGAGAAGACTGTCCAATCTTCCAACTGTAG...CTGTGGAGATGTCCAATGGTGAGCCAGGTTGCCACTACTTTGAGCAGCTTCGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp CTGCATGCTGCCCATGCTAACAAGGCCATCAACTGGGCCCTGCAAAGGTGGAAGAATAGGATCTACAGTTaGAAGATTGGACAGTCTTCT +
Preference number: 4 (lower is better)
Translates to: LHAAHANKAINWALQRWKNRIYS*KIGQSS
Trigger: AGAAGACTGTCCAATCTTCCAACTGTAGATCCTATT...CTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGCATGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp GGTAGGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCAATAGGATCTACAGTTaGAAGATTGGACAGTCTTCT +
Preference number: 4 (lower is better)
Translates to: GRRLSCSLDKWTSRLRAANRIYS*KIGQSS
Trigger: AGAAGACTGTCCAATCTTCCAACTGTAGATCCTATT...GGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCCTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTCACTTCATAATAGTCTaGTTGATTTCTCCGCTTTGG +
Preference number: 4 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALHFIIV*LISPLW
Trigger: CCAAAGCGGAGAAATCAACCAGACTATTATGAAGTG...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp GGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCAAAGCACTTCATAATAGTCTaGTTGATTTCTCCGCTTTGG +
Preference number: 4 (lower is better)
Translates to: GGSPVLWTNGHPVFELPKHFIIV*LISPLW
Trigger: CCAAAGCGGAGAAATCAACCAGACTATTATGAAGTG...CTTTGGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp ACCGAAGCTGCTCAAAGTAGTGGCAACCTGGCTCACCATTGGACATCTCCACAGGTCCTGATGGATTTGTaGCTACAACTATGGCTTCAA +
Preference number: 4 (lower is better)
Translates to: TEAAQSSGNLAHHWTSPQVLMDL*LQLWLQ
Trigger: TTGAAGCCATAGTTGTAGCCACAAATCCATCAGGAC...CTGTGGAGATGTCCAATGGTGAGCCAGGTTGCCACTACTTTGAGCAGCTTCGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTACCAGTGTCAGAAGTaGCTGAGGAGATCATGCTGT +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCYQCQK*LRRSCC
Trigger: ACAGCATGATCTCCTCAGCCACTTCTGACACTGGTA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAAGGTGGAAGGCCTGGCGGATAGCCACCCATCATGCCTTCATATTCTGCTTGTTTATTGGGAGAGTTaGGATCCACAGCAGGAATTT +
Preference number: 4 (lower is better)
Translates to: AKVEGLADSHPSCLHILLVYWES*DPQQEF
Trigger: AAATTCCTGCTGTGGATCCCAACTCTCCCAATAAAC...AAGCAGAATATGAAGGCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGGTATAGCTGAGTGCTaGAGAAAGAAGGATCTCTCC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCGIAEC*RKKDLS
Trigger: GGAGAGATCCTTCTTTCTCCAGCACTCAGCTATACC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCAAAGTAGTGGCAACCTaGCTCACCATTGGACATCTC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCKVVAT*LTIGHL
Trigger: GAGATGTCCAATGGTGAGCCAGGTTGCCACTACTTT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTCAGAATGTCATTTTCTaGTATTTCAGTTGGCCTGCA +
Preference number: 4 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALQNVIF*YFSWPA
Trigger: TGCAGGCCAACTGAAATACCAGAAAATGACATTCTG...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTCATATTCTGCTTTCTTaGCTGTTTCAAGGTTTCTCC +
Preference number: 4 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALHILLS*LFQGFS
Trigger: GGAGAAACCTTGAAACAGCCAAGAAAGCAGAATATG...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp TCCAGTCCAGCCAGGGTTGGTAGTAGGACCATGTCTCAAGAAAAGAAAGAAAGAATACGGACTTCCACCTaGTGCTGGAGTCCCTACCAT +
Preference number: 4 (lower is better)
Translates to: SSPARVGSRTMSQEKKERIRTST*CWSPYH
Trigger: ATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTAT...TCTTTCTTTCTTTTCTTGAGACATGGTCCTACTACCAACCCTGGCTGGACTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTGGTGCCTGCTGCCCTaGAGGTCCCAAAACTCCTAC +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLWCLLP*RSQNSY
Trigger: GTAGGAGTTTTGGGACCTCCAGGGCAGCAGGCACCA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TCCAGTCCAGCCAGGGTTGGTAGTAGGACCATGTCTCAAGAAAAGAAAGAAAGAAAACATGGGCGTTGTTaGCTGCTGTATGACAGGGGG +
Preference number: 4 (lower is better)
Translates to: SSPARVGSRTMSQEKKERKHGRC*LLYDRG
Trigger: CCCCCTGTCATACAGCAGCCAACAACGCCCATGTTT...TCTTTCTTTCTTTTCTTGAGACATGGTCCTACTACCAACCCTGGCTGGACTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
3UTR CAA 72 bp GGCAGTCTACCCTGCACAGCTATGTGCAGGCACAGCTaGTGTCCACTTACACTCTTTCTTGGGTTAAGTATT +
Preference number: 4 (lower is better)
Translates to: GSLPCTAMCRHS*CPLTLFLGLSI
Trigger: AATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCACATAGCTGTGCAGGGTAGACTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCCATTCTGTATCCTCTaGGCAATGGTCTTGAGATCT +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCPFCIL*AMVLRS
Trigger: AGATCTCAAGACCATTGCTCAGAGGATACAGAATGG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGCATCCTTGAATACTTaGGACCCAGGCTCATTGTAT +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCASLNT*DPGSLY
Trigger: ATACAATGAGCCTGGGTCTCAAGTATTCAAGGATGC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTGGCATTGCGGAACATaGGTTTCATGTCTTCCATCA +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCWHCGT*VSCLPS
Trigger: TGATGGAAGACATGAAACTCATGTTCCGCAATGCCA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp ACCGAAGCTGCTCAAAGTAGTGGCAACCTGGCTCACCATTGGACATCTCCACAGCTGATGACTCATGACTaGCACAAAAAGGTTATGGAT +
Preference number: 4 (lower is better)
Translates to: TEAAQSSGNLAHHWTSPQLMTHD*HKKVMD
Trigger: ATCCATAACCTTTTTGTGTCAGTCATGAGTCATCAG...CTGTGGAGATGTCCAATGGTGAGCCAGGTTGCCACTACTTTGAGCAGCTTCGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp ACCGAAGCTGCTCAAAGTAGTGGCAACCTGGCTCACCATTGGACATCTCCACAGCATCCTGATGACTCATaGCTGACACAAAAAGGTTAT +
Preference number: 4 (lower is better)
Translates to: TEAAQSSGNLAHHWTSPQHPDDS*LTQKGY
Trigger: ATAACCTTTTTGTGTCAGTCATGAGTCATCAGGATG...CTGTGGAGATGTCCAATGGTGAGCCAGGTTGCCACTACTTTGAGCAGCTTCGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp TCCAGTCCAGCCAGGGTTGGTAGTAGGACCATGTCTCAAGAAAAGAAAGAAAGACCATTTTTCACCAGCTaGATCCTCCCACAGTCTCTC +
Preference number: 4 (lower is better)
Translates to: SSPARVGSRTMSQEKKERPFFTS*ILPQSL
Trigger: GAGAGACTGTGGGAGGATTCAGCTGGTGAAAAATGG...TCTTTCTTTCTTTTCTTGAGACATGGTCCTACTACCAACCCTGGCTGGACTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGAGATGGAGCTTCAATaGCTTCACTATCCTCTTCTC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCEMELQ*LHYPLL
Trigger: GAGAAGAGGATAGTGAAGTCATTGAAGCTCCATCTC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCATGGGGGCTACTCCTTaGTTCATCACACCTTCATAT +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCMGATP*FITPSY
Trigger: ATATGAAGGTGTGATGAATCAAGGAGTAGCCCCCAT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022471.12
CDS-3UTR GCA 90 bp GCCGATAAAACCAACAGCCGTACAACCATTTTTCACCAGCTGAATCCTCCCACAATGGCTTCAAGAAGCTaGTCCAGGATCTCCTTCAGA +
Preference number: 4 (lower is better)
Translates to: ADKTNSRTTIFHQLNPPTMASRS*SRISFR
Trigger: TCTGAAGGAGATCCTGGAGCAGCTTCTTGAAGCCAT...TGTGGGAGGATTCAGCTGGTGAAAAATGGTTGTACGGCTGTTGGTTTTATCGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTTTGCCTGCATGACTTaGTGCAGTTTTAGAACTCGC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCFACMT*CSFRTR
Trigger: GCGAGTTCTAAAACTGCAGCAAGTCATGCAGGCAAA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTCATTCCTTCTTCACCTaGATATTTGTCATTTCGGAT +
Preference number: 4 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALHSFFT*IFVISD
Trigger: ATCCGAAATGACAAATATGCAGGTGAAGAAGGAATG...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp GGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCAAAGCATTCCTTCTTCACCTaGATATTTGTCATTTCGGAT +
Preference number: 4 (lower is better)
Translates to: GGSPVLWTNGHPVFELPKHSFFT*IFVISD
Trigger: ATCCGAAATGACAAATATGCAGGTGAAGAAGGAATG...CTTTGGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTTCATTCAGTTTCTGCTaGATTGGAGTCATGTACTTT +
Preference number: 4 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALSFSFC*IGVMYF
Trigger: AAAGTACATGACTCCAATGCAGCAGAAACTGAATGA...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCCGGTTCATCCTTCTTaGCCGTTCCAATACTTCAAA +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCPVHPS*PFQYFK
Trigger: TTTGAAGTATTGGAACGGGCAAGAAGGATGAACCGG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TCCAGTCCAGCCAGGGTTGGTAGTAGGACCATGTCTCAAGAAAAGAAAGAAAGATGCCATGGTGGTGTGTaGCCCTTTACTTTTGAGCCA +
Preference number: 4 (lower is better)
Translates to: SSPARVGSRTMSQEKKERCHGGV*PFTFEP
Trigger: TGGCTCAAAAGTAAAGGGGCACACACCACCATGGCA...TCTTTCTTTCTTTTCTTGAGACATGGTCCTACTACCAACCCTGGCTGGACTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp TCCAGTCCAGCCAGGGTTGGTAGTAGGACCATGTCTCAAGAAAAGAAAGAAAGATGCTGGAAGGAGAGGTaGCTCTTCTTCTCTTGGAAC +
Preference number: 4 (lower is better)
Translates to: SSPARVGSRTMSQEKKERCWKER*LFFSWN
Trigger: GTTCCAAGAGAAGAAGAGCCACCTCTCCTTCCAGCA...TCTTTCTTTCTTTTCTTGAGACATGGTCCTACTACCAACCCTGGCTGGACTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp GCTGAGTGCTGGAGAAAGAAGGATCTCTCCATTTTTGCAGAGTTCATCACGAATTTTCCTGCTTGGGCCTaGTGTAGGCACAGAATGGTG +
Preference number: 4 (lower is better)
Translates to: AECWRKKDLSIFAEFITNFPAWA*CRHRMV
Trigger: CACCATTCTGTGCCTACACCAGGCCCAAGCAGGAAA...ATTCGTGATGAACTCTGCAAAAATGGAGAGATCCTTCTTTCTCCAGCACTCAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTTGATTTCTCCGCTTTaGAGCCCTAATGAACAGCTC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCLISPL*SPNEQL
Trigger: GAGCTGTTCATTAGGGCTCCAAAGCGGAGAAATCAA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTCTGGATATTGCACTTTaGAAGGCAGTTTCTGAAAAA +
Preference number: 4 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALLDIAL*KAVSEK
Trigger: TTTTTCAGAAACTGCCTTCCAAAGTGCAATATCCAG...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp CCTGGAGGTCCCAAAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTTATAGATGGCTGAATTaGGAACGTTATAACGTTTGG +
Preference number: 4 (lower is better)
Translates to: PGGPKTPTCCPYGLPPGAYRWLN*ERYNVW
Trigger: CCAAACGTTATAACGTTCCCAATTCAGCCATCTATA...AGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTGGGACCTCCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCGGTATAGCTGAGTGCTaGAGAAAGAAGGATCTCTCC +
Preference number: 4 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTGIAEC*RKKDLS
Trigger: GGAGAGATCCTTCTTTCTCCAGCACTCAGCTATACC...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCTTCTGGTATTTCAGTTaGCCTGCAGGAGAGGAAGTC +
Preference number: 4 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTFWYFS*PAGEEV
Trigger: GACTTCCTCTCCTGCAGGCCAACTGAAATACCAGAA...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTGCCTTTGGCAGACTTTaGGGTAGACTGTGGGGGTGT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLAFGRL*GRLWGC
Trigger: ACACCCCCACAGTCTACCCCAAAGTCTGCCAAAGGC...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTGTTCTTTGGACAAATaGACATCCCGTCTTCGAGCT +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCCSLDK*TSRLRA
Trigger: AGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCAAAGGTGGAAGGCCTaGCGGATAGCCACCCATCAT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLQRWKA*RIATHH
Trigger: ATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTGGGCCCTGCAAAGGTaGAAGGCCTGGCGGATAGCC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSWALQR*KAWRIA
Trigger: GGCTATCCGCCAGGCCTTCCACCTTTGCAGGGCCCA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGAGGCCAGGCACACCTaGCGGAAGATGGTGAGGTGG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSEARHT*RKMVRW
Trigger: CCACCTCACCATCTTCCGCCAGGTGTGCCTGGCCTC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGAGGCCAGGCACACCTaGCGGAAGATGGTGAGGTGG +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFEARHT*RKMVRW
Trigger: CCACCTCACCATCTTCCGCCAGGTGTGCCTGGCCTC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp ATCACCAACCTTCAGCCACATGTCATTGTACCGAAGCTGCTCAAAGTAGTGGCACCATTCTGTATCCTCTaGGCAATGGTCTTGAGATCT +
Preference number: 4 (lower is better)
Translates to: ITNLQPHVIVPKLLKVVAPFCIL*AMVLRS
Trigger: AGATCTCAAGACCATTGCTCAGAGGATACAGAATGG...TGCCACTACTTTGAGCAGCTTCGGTACAATGACATGTGGCTGAAGGTTGGTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp CCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATTTCACTGCTGCATCCTTGAATACTTaGGACCCAGGCTCATTGTAT +
Preference number: 4 (lower is better)
Translates to: PKRVVWVLGFNHSSHFTAASLNT*DPGSLY
Trigger: ATACAATGAGCCTGGGTCTCAAGTATTCAAGGATGC...AGCAGTGAAATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp TCCGACATGATACATGCTGTTCTTAAAGCTGCAGTCCTGGCTGTATGTACGATGGTCCTCTTCACTCTCTaGTCCATACTGAAGTGCCAT +
Preference number: 4 (lower is better)
Translates to: SDMIHAVLKAAVLAVCTMVLFTL*SILKCH
Trigger: ATGGCACTTCAGTATGGATCAGAGAGTGAAGAGGAC...CATCGTACATACAGCCAGGACTGCAGCTTTAAGAACAGCATGTATCATGTCGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp GTCTGTATTCTTCTCATCATCCCCTTTATCTGCATTTGCAAACACAGAGGCCACAGAAAGGTTCAGCTATaGGCTGCCCTTGGTGATTCC +
Preference number: 4 (lower is better)
Translates to: VCILLIIPFICICKHRGHRKVQL*AALGDS
Trigger: GGAATCACCAAGGGCAGCTCATAGCTGAACCTTTCT...GTGGCCTCTGTGTTTGCAAATGCAGATAAAGGGGATGATGAGAAGAATACAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTCGCTTATAGATGGCTaGATTGGGAACGTTATAACG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCSLIDG*IGNVIT
Trigger: CGTTATAACGTTCCCAATTCAGCCATCTATAAGCGA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTCTTCTTTGCCTGCATaGCTTGCTGCAGTTTTAGAA +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCSSLPA*LAAVLE
Trigger: TTCTAAAACTGCAGCAAGTCATGCAGGCAAAGAAGA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp CTTCGAGCTGCCAAAGTTTGGTCCCACTTGCTAATGCTGTTGGATTCAGCACTGTCTTCTTTGCCTGCATaGCTTGCTGCAGTTTTAGAA +
Preference number: 4 (lower is better)
Translates to: LRAAKVWSHLLMLLDSALSSLPA*LAAVLE
Trigger: TTCTAAAACTGCAGCAAGTCATGCAGGCAAAGAAGA...CAGTGCTGAATCCAACAGCATTAGCAAGTGGGACCAAACTTTGGCAGCTCGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCAAAAAGGTTATGGATaGGCTCTTGAATCAGCAACG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCQKGYG*ALESAT
Trigger: CGTTGCTGATTCAAGAGCTCATCCATAACCTTTTTG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCACCTCTTCAAACCCTTaGACTTCTTCATCTGCTTGT +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCTSSNP*TSSSAC
Trigger: ACAAGCAGATGAAGAAGTTCAAGGGTTTGAAGAGGT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTAGGGGTGTCTGCAGTTaGGGTAGAGATGGAGCTTCA +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLRGVCS*GRDGAS
Trigger: TGAAGCTCCATCTCTACCTCAACTGCAGACACCCCT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCTCTCATTTCACTGCTaGACAAAATGTAGCCACTCA +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCLSFHC*TKCSHS
Trigger: TGAGTGGCTACATTTTGTTCAGCAGTGAAATGAGAG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTTACTTTTGAGCCAGTaGGAAGGTAGGCGGCTCTCC +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLLLLSQ*EGRRLS
Trigger: GGAGAGCCGCCTACCTTCTCACTGGCTCAAAAGTAA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTGTGCCCCTTTACTTTTaGGCCAGTGAGAAGGTAGGC +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLVPLYF*ASEKVG
Trigger: GCCTACCTTCTCACTGGCTCAAAAGTAAAGGGGCAC...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTTTCTTCACCAAGGCTaGTTTTATTGTGCGAAGGAC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCFLHQG*FYCAKD
Trigger: GTCCTTCGCACAATAAAAGCAGCCTTGGTGAAGAAA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TCCGACATGATACATGCTGTTCTTAAAGCTGCAGTCCTGGCTGTATGTACGATGGGAAGTGATGCTCTCTaGTTCAGATTCCCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: SDMIHAVLKAAVLAVCTMGSDAL*FRFPFF
Trigger: GAAGAAGGGGAATCTGAAGCAGAGAGCATCACTTCC...CATCGTACATACAGCCAGGACTGCAGCTTTAAGAACAGCATGTATCATGTCGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp CCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATTTCACTGCTGCCTGCATGACTTGCTaGAGTTTTAGAACTCGCTTA +
Preference number: 4 (lower is better)
Translates to: PKRVVWVLGFNHSSHFTAACMTC*SFRTRL
Trigger: TAAGCGAGTTCTAAAACTGCAGCAAGTCATGCAGGC...AGCAGTGAAATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp GCCGATAAAACCAACAGCCGTACAACCATTTTTCACCAGCTGAATCCTCCCACATTTGCCTGCATGACTTaGTGCAGTTTTAGAACTCGC +
Preference number: 4 (lower is better)
Translates to: ADKTNSRTTIFHQLNPPTFACMT*CSFRTR
Trigger: GCGAGTTCTAAAACTGCAGCAAGTCATGCAGGCAAA...TGTGGGAGGATTCAGCTGGTGAAAAATGGTTGTACGGCTGTTGGTTTTATCGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTGATCGCAAAGTCTTCTaGCTGAACCTGGCTCTCGAG +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLDRKVF*LNLALE
Trigger: CTCGAGAGCCAGGTTCAGGCAGAAGACTTTGCGATC...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TCCAGTCCAGCCAGGGTTGGTAGTAGGACCATGTCTCAAGAAAAGAAAGAAAGACCCTTTATCTGCATTTaGAAACACAGAGGCCACTCG +
Preference number: 4 (lower is better)
Translates to: SSPARVGSRTMSQEKKERPFICI*KHRGHS
Trigger: CGAGTGGCCTCTGTGTTTGCAAATGCAGATAAAGGG...TCTTTCTTTCTTTTCTTGAGACATGGTCCTACTACCAACCCTGGCTGGACTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCATCATCCCCTTTATCTaGATTTGCAAACACAGAGGC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCIIPFI*ICKHRG
Trigger: GCCTCTGTGTTTGCAAATGCAGATAAAGGGGATGAT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCAGAACTTTCCTTCTTTaGACTGCCTTTGGCAGACTT +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCRTFLL*TAFGRL
Trigger: AAGTCTGCCAAAGGCAGTGCAAAGAAGGAAAGTTCT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCGGACTTCCACCTGGTaGTGGAGTCCCTACCATGGG +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFRTSTW*WSPYHG
Trigger: CCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGGAGGTGGTGCCTGCTaGCCTGGAGGTCCCAAAACT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFGGGAC*PGGPKT
Trigger: AGTTTTGGGACCTCCAGGGCAGCAGGCACCACCTCC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGGAGGTGGTGCCTGCTaGCCTGGAGGTCCCAAAACT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSGGGAC*PGGPKT
Trigger: AGTTTTGGGACCTCCAGGGCAGCAGGCACCACCTCC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTAGGATATGGAGGTGGTaGCTGCTGCCCTGGAGGTCC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSRIWRW*LLPWRS
Trigger: GGACCTCCAGGGCAGCAGGCACCACCTCCATATCCT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCCATCAACTGGGCCCTaGAAAGGTGGAAGGCCTGGC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSPSTGP*KGGRPG
Trigger: GCCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCGGCTGCTGTTGCTGTaGTGCTCGCTCTCTCTCCTG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSRLLLL*CSLSLL
Trigger: CAGGAGAGAGAGCGAGCAGCACAGCAACAGCAGCCG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTCTCCTTTTCCTGCTTaGGCCTGGTGTAGGCACAGA +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLSPFPA*AWCRHR
Trigger: TCTGTGCCTACACCAGGCCCAAGCAGGAAAAGGAGA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCTACAGTTGGAAGATTaGACAGTCTTCTCCTTTTCC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCLQLED*TVFSFS
Trigger: GGAAAAGGAGAAGACTGTCCAATCTTCCAACTGTAG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGTCCTGATGGATTTGTaGCTACAACTATGGCTTCAA +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCVLMDL*LQLWLQ
Trigger: TTGAAGCCATAGTTGTAGCCACAAATCCATCAGGAC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAAGGTGGAAGGCCTGGCGGATAGCCACCCATCATGCCTTCATATTCTGCTTTTCTTTGAAGGCAAATaGAAGAAAGGTTCAGCTATG +
Preference number: 4 (lower is better)
Translates to: AKVEGLADSHPSCLHILLFFEGK*KKGSAM
Trigger: CATAGCTGAACCTTTCTTCCATTTGCCTTCAAAGAA...AAGCAGAATATGAAGGCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp CCTGGAGGTCCCAAAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTATAGAATCTATGTCTTaGTACTTGTTTGCCATCATG +
Preference number: 4 (lower is better)
Translates to: PGGPKTPTCCPYGLPPGAIESMS*YLFAIM
Trigger: CATGATGGCAAACAAGTACCAAGACATAGATTCTAT...AGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTGGGACCTCCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGTAGATCAAAGACTCTaGTTCATTGTAGGTACAGGC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCVDQRL*FIVGTG
Trigger: GCCTGTACCTACAATGAACCAGAGTCTTTGATCTAC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGTTTATTGGGAGAGTTaGGATCCACAGCAGGAATTT +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCVYWES*DPQQEF
Trigger: AAATTCCTGCTGTGGATCCCAACTCTCCCAATAAAC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTGGGCGCACCAAGCCGTaGGATTTGATGAAGACACAA +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLGRTKP*DLMKTQ
Trigger: TTGTGTCTTCATCAAATCCCACGGCTTGGTGCGCCC...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCACTTCCACCTGGTGCTaGAGTCCCTACCATGGGGGC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFTSTWC*SPYHGG
Trigger: GCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTACTTCCACCTGGTGCTaGAGTCCCTACCATGGGGGC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSTSTWC*SPYHGG
Trigger: GCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTATTGAGCATCCCCATTaGTGTTGGTGGTGGCACCAC +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLIEHPH*CWWWHH
Trigger: GTGGTGCCACCACCAACACCAATGGGGATGCTCAAT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
3UTR CAA 72 bp TGTCTGTATTCTTCTCATCATCCCCTTTATCTGCATTaGCAAACACAGAGGCCACTCGGACCACAGGCAAAG +
Preference number: 4 (lower is better)
Translates to: CLYSSHHPLYLH*QTQRPLGPQAK
Trigger: CTTTGCCTGTGGTCCGAGTGGCCTCTGTGTTTGCAAATGCAGATAAAGGGGATGATGAGAAGAATACAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTAGAAAGGTTCAGCTATaGGCTGCCCTTGGTGATTCC +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLRKVQL*AALGDS
Trigger: GGAATCACCAAGGGCAGCTCATAGCTGAACCTTTCT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp ATCACCAACCTTCAGCCACATGTCATTGTACCGAAGCTGCTCAAAGTAGTGGCATCGCTTATAGATGGCTaGATTGGGAACGTTATAACG +
Preference number: 4 (lower is better)
Translates to: ITNLQPHVIVPKLLKVVASLIDG*IGNVIT
Trigger: CGTTATAACGTTCCCAATTCAGCCATCTATAAGCGA...TGCCACTACTTTGAGCAGCTTCGGTACAATGACATGTGGCTGAAGGTTGGTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCTCTTCTTTGCCTGCATaGCTTGCTGCAGTTTTAGAA +
Preference number: 4 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTSSLPA*LAAVLE
Trigger: TTCTAAAACTGCAGCAAGTCATGCAGGCAAAGAAGA...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR TCA 90 bp ATCACCAACCTTCAGCCACATGTCATTGTACCGAAGCTGCTCAAAGTAGTGGCATCTTCTTTGCCTGCATaGCTTGCTGCAGTTTTAGAA +
Preference number: 4 (lower is better)
Translates to: ITNLQPHVIVPKLLKVVASSLPA*LAAVLE
Trigger: TTCTAAAACTGCAGCAAGTCATGCAGGCAAAGAAGA...TGCCACTACTTTGAGCAGCTTCGGTACAATGACATGTGGCTGAAGGTTGGTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTCAAACATATGCTCCTaGAATAAATCAAGTCGCCGA +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCSNICS*NKSSRR
Trigger: TCGGCGACTTGATTTATTTCAGGAGCATATGTTTGA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCCATTTTTCACCAGCTaGATCCTCCCACAGTCTCTC +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLPFFTS*ILPQSL
Trigger: GAGAGACTGTGGGAGGATTCAGCTGGTGAAAAATGG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTACAGGTGTCAACTGCTaGTTGAGCATCCCCATTGGT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLTGVNC*LSIPIG
Trigger: ACCAATGGGGATGCTCAATCAGCAGTTGACACCTGT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCTGAGCTCCCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATCTTATAGTAGGCCTTTaGATTGTTAAAAAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: AELPKRVVWVLGFNHSSHLIVGL*IVKKQL
Trigger: CAGCTGCTTTTTAACAATGCAAAGGCCTACTATAAG...ATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGGGAGCTCAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp GCTGAGCTCCCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATATCATCTTCATCGTCTaGTTCTCCTTTCTGAACAAA +
Preference number: 4 (lower is better)
Translates to: AELPKRVVWVLGFNHSSHIIFIV*FSFLNK
Trigger: TTTGTTCAGAAAGGAGAAGCAGACGATGAAGATGAT...ATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGGGAGCTCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp ATCACCAACCTTCAGCCACATGTCATTGTACCGAAGCTGCTCAAAGTAGTGGCATTTCTTCACCAAGGCTaGTTTTATTGTGCGAAGGAC +
Preference number: 4 (lower is better)
Translates to: ITNLQPHVIVPKLLKVVAFLHQG*FYCAKD
Trigger: GTCCTTCGCACAATAAAAGCAGCCTTGGTGAAGAAA...TGCCACTACTTTGAGCAGCTTCGGTACAATGACATGTGGCTGAAGGTTGGTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp TCCAGTCCAGCCAGGGTTGGTAGTAGGACCATGTCTCAAGAAAAGAAAGAAAGAGCCTGCATGACTTGCTaGAGTTTTAGAACTCGCTTA +
Preference number: 4 (lower is better)
Translates to: SSPARVGSRTMSQEKKERACMTC*SFRTRL
Trigger: TAAGCGAGTTCTAAAACTGCAGCAAGTCATGCAGGC...TCTTTCTTTCTTTTCTTGAGACATGGTCCTACTACCAACCCTGGCTGGACTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp GCTGAGTGCTGGAGAAAGAAGGATCTCTCCATTTTTGCAGAGTTCATCACGAATAAGCTCCTTCTTCTTTaGCTGCATGACTTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: AECWRKKDLSIFAEFITNKLLLL*LHDLLQ
Trigger: CTGCAGCAAGTCATGCAGGCAAAGAAGAAGGAGCTT...ATTCGTGATGAACTCTGCAAAAATGGAGAGATCCTTCTTTCTCCAGCACTCAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTGGCTGAGGAGATCATaGTGTCTCCGTCCTCAATGT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLWLRRS*CLRPQC
Trigger: ACATTGAGGACGGAGACAGCATGATCTCCTCAGCCA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCACACCTTCATATTCTaGTTTCTTGGCTGTTTCAAG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCHTFIF*FLGCFK
Trigger: CTTGAAACAGCCAAGAAAGCAGAATATGAAGGTGTG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022471.12
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTATGGAGGTGGTGCCTaGTGCCCTGGAGGTCCCAAA +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSYGGGA*CPGGPK
Trigger: TTTGGGACCTCCAGGGCAGCAGGCACCACCTCCATA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTATGGAGGTGGTGCCTaGTGCCCTGGAGGTCCCAAA +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFYGGGA*CPGGPK
Trigger: TTTGGGACCTCCAGGGCAGCAGGCACCACCTCCATA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp CACATCGTTATGCAAGTGTTTTGTGGTATAGCTGAGTGCTGGAGAAAGAAGGATTGCTGGAAGGAGAGGTaGCTCTTCTTCTCTTGGAAC +
Preference number: 4 (lower is better)
Translates to: HIVMQVFCGIAECWRKKDCWKER*LFFSWN
Trigger: GTTCCAAGAGAAGAAGAGCCACCTCTCCTTCCAGCA...ATCCTTCTTTCTCCAGCACTCAGCTATACCACAAAACACTTGCATAACGATGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp CATCTGCTTGTCACTCTCATTATAGCGGCTCTCACAAAGCAGAATGTCATTTTCGGTGTAGGCACAGAATaGTGCCCGTCATCAAAGTCT +
Preference number: 4 (lower is better)
Translates to: HLLVTLIIAALTKQNVIFGVGTE*CPSSKS
Trigger: AGACTTTGATGACGGGCACCATTCTGTGCCTACACC...GAAAATGACATTCTGCTTTGTGAGAGCCGCTATAATGAGAGTGACAAGCAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCCTACAGTTGGAAGATTaGACAGTCTTCTCCTTTTCC +
Preference number: 4 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTLQLED*TVFSFS
Trigger: GGAAAAGGAGAAGACTGTCCAATCTTCCAACTGTAG...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCACTTCATAATAGTCTaGTTGATTTCTCCGCTTTGG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCHFIIV*LISPLW
Trigger: CCAAAGCGGAGAAATCAACCAGACTATTATGAAGTG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTGACAAGCGACCCCCTTaGACTGCTCTTTTATTACGG +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLDKRPP*TALLLR
Trigger: CCGTAATAAAAGAGCAGTCCAAGGGGGTCGCTTGTC...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp CATCTGCTTGTCACTCTCATTATAGCGGCTCTCACAAAGCAGAATGTCATTTTCGACAAGCGACCCCCTTaGACTGCTCTTTTATTACGG +
Preference number: 4 (lower is better)
Translates to: HLLVTLIIAALTKQNVIFDKRPP*TALLLR
Trigger: CCGTAATAAAAGAGCAGTCCAAGGGGGTCGCTTGTC...GAAAATGACATTCTGCTTTGTGAGAGCCGCTATAATGAGAGTGACAAGCAGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCAGAATGTCATTTTCTaGTATTTCAGTTGGCCTGCA +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCQNVIF*YFSWPA
Trigger: TGCAGGCCAACTGAAATACCAGAAAATGACATTCTG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCATATTCTGCTTTCTTaGCTGTTTCAAGGTTTCTCC +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCHILLS*LFQGFS
Trigger: GGAGAAACCTTGAAACAGCCAAGAAAGCAGAATATG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTGGTGCCTGCTGCCCTaGAGGTCCCAAAACTCCTAC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFWCLLP*RSQNSY
Trigger: GTAGGAGTTTTGGGACCTCCAGGGCAGCAGGCACCA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTGGTGCCTGCTGCCCTaGAGGTCCCAAAACTCCTAC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSWCLLP*RSQNSY
Trigger: GTAGGAGTTTTGGGACCTCCAGGGCAGCAGGCACCA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGAGTGGAGAAGCCTTTaGGTCTTTGGTGGGGGAGCC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFEWRSL*VFGGGA
Trigger: GGCTCCCCCACCAAAGACCCAAAGGCTTCTCCACTC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCGAGCTGCCAAAGTTTaGTCCCACTTGCTAATGCTG +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLRAAKV*SHLLML
Trigger: CAGCATTAGCAAGTGGGACCAAACTTTGGCAGCTCG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTATTCCTTTTCCTTTTaGCACTACCAGTGTCAGAAG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCYSFSF*HYQCQK
Trigger: CTTCTGACACTGGTAGTGCCAAAAGGAAAAGGAATA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCATCCCCATTGGTGTTaGTGGTGGCACCACCCCCAT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFHPHWC*WWHHPH
Trigger: ATGGGGGTGGTGCCACCACCAACACCAATGGGGATG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCATCCCCATTGGTGTTaGTGGTGGCACCACCCCCAT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSHPHWC*WWHHPH
Trigger: ATGGGGGTGGTGCCACCACCAACACCAATGGGGATG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTGTCCTCTTCACTCTCTaGTCCATACTGAAGTGCCAT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLVLFTL*SILKCH
Trigger: ATGGCACTTCAGTATGGATCAGAGAGTGAAGAGGAC...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTCTTTAGCTTTGTTCTaGTCTGTTGAAGTGATATGG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCSLALF*SVEVIW
Trigger: CCATATCACTTCAACAGATCAGAACAAAGCTAAAGA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCCTGATGACTCATGACTaGCACAAAAAGGTTATGGAT +
Preference number: 4 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTLMTHD*HKKVMD
Trigger: ATCCATAACCTTTTTGTGTCAGTCATGAGTCATCAG...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR TCA 90 bp GCCGATAAAACCAACAGCCGTACAACCATTTTTCACCAGCTGAATCCTCCCACACATCCTGATGACTCATaGCTGACACAAAAAGGTTAT +
Preference number: 4 (lower is better)
Translates to: ADKTNSRTTIFHQLNPPTHPDDS*LTQKGY
Trigger: ATAACCTTTTTGTGTCAGTCATGAGTCATCAGGATG...TGTGGGAGGATTCAGCTGGTGAAAAATGGTTGTACGGCTGTTGGTTTTATCGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTAGGGACAAATCTAACTaGACTGATGGGCATGGTCCA +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLRDKSN*TDGHGP
Trigger: TGGACCATGCCCATCAGTTCAGTTAGATTTGTCCCT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTGGTGAGGGTTCCTTCTaGGGAATGATTGGTTTTCTG +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLGEGSF*GMIGFL
Trigger: CAGAAAACCAATCATTCCTCAGAAGGAACCCTCACC...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCAACATCTCACTGTCATaGGTATTCCTTTTCCTTTTG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCNISLS*VFLFLL
Trigger: CAAAAGGAAAAGGAATACTCATGACAGTGAGATGTT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTATGGGGGCTACTCCTTaGTTCATCACACCCGGTGGT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSMGATP*FITPGG
Trigger: ACCACCGGGTGTGATGAATCAAGGAGTAGCCCCCAT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCATGGGGGCTACTCCTTaGTTCATCACACCCGGTGGT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFMGATP*FITPGG
Trigger: ACCACCGGGTGTGATGAATCAAGGAGTAGCCCCCAT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCATCATCTTCATCGTCTaGTTCTCCTTTCTGAACAAA +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCIIFIV*FSFLNK
Trigger: TTTGTTCAGAAAGGAGAAGCAGACGATGAAGATGAT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTATGGCTTCAAGAAGCTaGTCCAGGATCTCCTTCAGA +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLMASRS*SRISFR
Trigger: TCTGAAGGAGATCCTGGAGCAGCTTCTTGAAGCCAT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GTCACTCTCATTATAGCGGCTCTCACAAAGCAGAATGTCATTTTCTGGTATTTCTGGCTGAGGAGATCATaGTGTCTCCGTCCTCAATGT +
Preference number: 4 (lower is better)
Translates to: VTLIIAALTKQNVIFWYFWLRRS*CLRPQC
Trigger: ACATTGAGGACGGAGACAGCATGATCTCCTCAGCCA...GAAATACCAGAAAATGACATTCTGCTTTGTGAGAGCCGCTATAATGAGAGTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCATTCCTTCTTCACCTaGATATTTGTCATTTCGGAT +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCHSFFT*IFVISD
Trigger: ATCCGAAATGACAAATATGCAGGTGAAGAAGGAATG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTCATTCAGTTTCTGCTaGATTGGAGTCATGTACTTT +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCSFSFC*IGVMYF
Trigger: AAAGTACATGACTCCAATGCAGCAGAAACTGAATGA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GAGCTCCCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATTTCTCATTCAGTTTCTGCTaGATTGGAGTCATGTACTTT +
Preference number: 4 (lower is better)
Translates to: ELPKRVVWVLGFNHSSHFSFSFC*IGVMYF
Trigger: AAAGTACATGACTCCAATGCAGCAGAAACTGAATGA...GAAATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGGGAGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCCCTTTATCTGCATTTaGAAACACAGAGGCCACTCG +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLPFICI*KHRGHS
Trigger: CGAGTGGCCTCTGTGTTTGCAAATGCAGATAAAGGG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTAGGGCCATAAAAATATaGAGCTCCATCTCGGACCCA +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLRAIKI*SSISDP
Trigger: TGGGTCCGAGATGGAGCTGCATATTTTTATGGCCCT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCGCTCTCTCTCCTGCTaGTCAGCAACTTTAGCTGCC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSRSLSC*SATLAA
Trigger: GGCAGCTAAAGTTGCTGAGCAGCAGGAGAGAGAGCG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCGCTCTCTCTCCTGCTaGTCAGCAACTTTAGCTGCC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFRSLSC*SATLAA
Trigger: GGCAGCTAAAGTTGCTGAGCAGCAGGAGAGAGAGCG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCAATAGGATCTACAGTTaGAAGATTGGACAGTCTTCT +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCNRIYS*KIGQSS
Trigger: AGAAGACTGTCCAATCTTCCAACTGTAGATCCTATT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TTAAAGCTGCAGTCCTGGCTGTATGTACGATGTAAGCCTGAGAGGCCTGTAGTACACTTCATAATAGTCTaGTTGATTTCTCCGCTTTGG +
Preference number: 4 (lower is better)
Translates to: LKLQSWLYVRCKPERPVVHFIIV*LISPLW
Trigger: CCAAAGCGGAGAAATCAACCAGACTATTATGAAGTG...TACTACAGGCCTCTCAGGCTTACATCGTACATACAGCCAGGACTGCAGCTTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCTGGATATTGCACTTTaGAAGGCAGTTTCTGAAAAA +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCLDIAL*KAVSEK
Trigger: TTTTTCAGAAACTGCCTTCCAAAGTGCAATATCCAG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTTCTTTGAAGGCAAATaGAAGAAAGGTTCAGCTATG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCFFEGK*KKGSAM
Trigger: CATAGCTGAACCTTTCTTCCATTTGCCTTCAAAGAA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTATAGATGGCTGAATTaGGAACGTTATAACGTTTGG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCYRWLN*ERYNVW
Trigger: CCAAACGTTATAACGTTCCCAATTCAGCCATCTATA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCCAAAGTTTGGTCCCACTTGCTAATGCTGTTGGATTCAGCACTGAGTCCTTCAGAACTCGCTTATAGATaGCTGAATTGGGAACGTTAT +
Preference number: 4 (lower is better)
Translates to: AKVWSHLLMLLDSALSPSELAYR*LNWERY
Trigger: ATAACGTTCCCAATTCAGCCATCTATAAGCGAGTTC...TGAAGGACTCAGTGCTGAATCCAACAGCATTAGCAAGTGGGACCAAACTTTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTGGTATAGCTGAGTGCTaGAGAAAGAAGGATCTCTCC +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLGIAEC*RKKDLS
Trigger: GGAGAGATCCTTCTTTCTCCAGCACTCAGCTATACC...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCATGGAATGTTTCATTTaGCCGATAAAACCAACAGCC +
Preference number: 4 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTMECFI*PIKPTA
Trigger: GGCTGTTGGTTTTATCGGCCAAATGAAACATTCCAT...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCATGTTCTGTTTCTTCTaGATGAATGAAGATAGGGCC +
Preference number: 4 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTMFCFF*MNEDRA
Trigger: GGCCCTATCTTCATTCATCCAGAAGAAACAGAACAT...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTTCTGGTATTTCAGTTaGCCTGCAGGAGAGGAAGTC +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLFWYFS*PAGEEV
Trigger: GACTTCCTCTCCTGCAGGCCAACTGAAATACCAGAA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGCCTTTGGCAGACTTTaGGGTAGACTGTGGGGGTGT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSAFGRL*GRLWGC
Trigger: ACACCCCCACAGTCTACCCCAAAGTCTGCCAAAGGC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGCCTTTGGCAGACTTTaGGGTAGACTGTGGGGGTGT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFAFGRL*GRLWGC
Trigger: ACACCCCCACAGTCTACCCCAAAGTCTGCCAAAGGC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGGGGAGCCACAAACATaGGCGTTGTTGGCTGCTGTA +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSGEPQT*ALLAAV
Trigger: TACAGCAGCCAACAACGCCCATGTTTGTGGCTCCCC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGGGGAGCCACAAACATaGGCGTTGTTGGCTGCTGTA +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFGEPQT*ALLAAV
Trigger: TACAGCAGCCAACAACGCCCATGTTTGTGGCTCCCC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCAAAGGTGGAAGGCCTaGCGGATAGCCACCCATCAT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFQRWKA*RIATHH
Trigger: ATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp ATCACCAACCTTCAGCCACATGTCATTGTACCGAAGCTGCTCAAAGTAGTGGCATCTTTAGCTTTGTTCTaGTCTGTTGAAGTGATATGG +
Preference number: 4 (lower is better)
Translates to: ITNLQPHVIVPKLLKVVASLALF*SVEVIW
Trigger: CCATATCACTTCAACAGATCAGAACAAAGCTAAAGA...TGCCACTACTTTGAGCAGCTTCGGTACAATGACATGTGGCTGAAGGTTGGTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp TCCAGTCCAGCCAGGGTTGGTAGTAGGACCATGTCTCAAGAAAAGAAAGAAAGAAACTTTAGCAGAGAGTaGAAACCTCTTCAAACCCTT +
Preference number: 4 (lower is better)
Translates to: SSPARVGSRTMSQEKKERNFSRE*KPLQTL
Trigger: AAGGGTTTGAAGAGGTTTTCACTCTCTGCTAAAGTT...TCTTTCTTTCTTTTCTTGAGACATGGTCCTACTACCAACCCTGGCTGGACTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR TCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCAGGGGTGTCTGCAGTTaGGGTAGAGATGGAGCTTCA +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFRGVCS*GRDGAS
Trigger: TGAAGCTCCATCTCTACCTCAACTGCAGACACCCCT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTAGGGGTGTCTGCAGTTaGGGTAGAGATGGAGCTTCA +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSRGVCS*GRDGAS
Trigger: TGAAGCTCCATCTCTACCTCAACTGCAGACACCCCT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTTTCAGGTAGGCCTCTaGGTGGAGAAGCCTTTGGGT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSFQVGL*VEKPLG
Trigger: ACCCAAAGGCTTCTCCACTCAGAGGCCTACCTGAAA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTTACTTTTGAGCCAGTaGGAAGGTAGGCGGCTCTCC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSLLLSQ*EGRRLS
Trigger: GGAGAGCCGCCTACCTTCTCACTGGCTCAAAAGTAA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp AGGTTCAACATAGACATAATCTCCGACATGATACATGCTGTTCTTAAAGCTGCAGTAGGCACAGAATGGTaGCCGTCATCAAAGTCTCCA +
Preference number: 4 (lower is better)
Translates to: RFNIDIISDMIHAVLKAAVGTEW*PSSKSP
Trigger: TGGAGACTTTGATGACGGGCACCATTCTGTGCCTAC...TGCAGCTTTAAGAACAGCATGTATCATGTCGGAGATTATGTCTATGTTGAACCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCATCATCTTCATCGTCTaGTTCTCCTTTCTGAACAAA +
Preference number: 4 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTIIFIV*FSFLNK
Trigger: TTTGTTCAGAAAGGAGAAGCAGACGATGAAGATGAT...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp TTAAAGCTGCAGTCCTGGCTGTATGTACGATGTAAGCCTGAGAGGCCTGTAGTAATCATCTTCATCGTCTaGTTCTCCTTTCTGAACAAA +
Preference number: 4 (lower is better)
Translates to: LKLQSWLYVRCKPERPVVIIFIV*FSFLNK
Trigger: TTTGTTCAGAAAGGAGAAGCAGACGATGAAGATGAT...TACTACAGGCCTCTCAGGCTTACATCGTACATACAGCCAGGACTGCAGCTTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp CAAATGGAATGTTTCATTTGGCCGATAAAACCAACAGCCGTACAACCATTTTTCAGGCTGCTTTTATTGTaGGAAGGACCTGTCAGCCTG +
Preference number: 4 (lower is better)
Translates to: QMECFIWPIKPTAVQPFFRLLLL*EGPVSL
Trigger: CAGGCTGACAGGTCCTTCGCACAATAAAAGCAGCCT...GAAAAATGGTTGTACGGCTGTTGGTTTTATCGGCCAAATGAAACATTCCATTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp ACATTTTCTAGGTTGTATGCCTGTCGGATGTTGAGAGTGTCTCGAAGCATTAAAGGAAGTGATGCTCTCTaGTTCAGATTCCCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: TFSRLYACRMLRVSRSIKGSDAL*FRFPFF
Trigger: GAAGAAGGGGAATCTGAAGCAGAGAGCATCACTTCC...TTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGAAAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGATCGCAAAGTCTTCTaGCTGAACCTGGCTCTCGAG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSDRKVF*LNLALE
Trigger: CTCGAGAGCCAGGTTCAGGCAGAAGACTTTGCGATC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCCAAAGTTTGGTCCCACTTGCTAATGCTGTTGGATTCAGCACTGAGTCCTTCATCATTCAGTTTCTGCTaGATTGGAGTCATGTACTTT +
Preference number: 4 (lower is better)
Translates to: AKVWSHLLMLLDSALSPSSFSFC*IGVMYF
Trigger: AAAGTACATGACTCCAATGCAGCAGAAACTGAATGA...TGAAGGACTCAGTGCTGAATCCAACAGCATTAGCAAGTGGGACCAAACTTTGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCCGGTTCATCCTTCTTaGCCGTTCCAATACTTCAAA +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLPVHPS*PFQYFK
Trigger: TTTGAAGTATTGGAACGGGCAAGAAGGATGAACCGG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp CATCTGCTTGTCACTCTCATTATAGCGGCTCTCACAAAGCAGAATGTCATTTTCGCGGTTCATCCTTCTTaGCCGTTCCAATACTTCAAA +
Preference number: 4 (lower is better)
Translates to: HLLVTLIIAALTKQNVIFAVHPS*PFQYFK
Trigger: TTTGAAGTATTGGAACGGGCAAGAAGGATGAACCGC...GAAAATGACATTCTGCTTTGTGAGAGCCGCTATAATGAGAGTGACAAGCAGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123678.8
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTTTCCTGCTTGGGCCTaGTGTAGGCACAGAATGGTG +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFFPAWA*CRHRMV
Trigger: CACCATTCTGTGCCTACACCAGGCCCAAGCAGGAAA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTCTCCTTTTCCTGCTTaGGCCTGGTGTAGGCACAGA +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFSPFPA*AWCRHR
Trigger: TCTGTGCCTACACCAGGCCCAAGCAGGAAAAGGAGA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCAATAGGATCTACAGTTaGAAGATTGGACAGTCTTCT +
Preference number: 4 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTNRIYS*KIGQSS
Trigger: AGAAGACTGTCCAATCTTCCAACTGTAGATCCTATT...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTTGATTTCTCCGCTTTaGAGCCCTAATGAACAGCTC +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLLISPL*SPNEQL
Trigger: GAGCTGTTCATTAGGGCTCCAAAGCGGAGAAATCAA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTTGTGGCTACAACTATaGCTTCAAGAAGCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLLWLQL*LQEAAP
Trigger: TGGAGCAGCTTCTTGAAGCCATAGTTGTAGCCACAA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTATTGCATAATAGTCTaGATATTGCACTTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCYCIIV*ILHFGR
Trigger: CCTTCCAAAGTGCAATATCCAGACTATTATGCAATA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp CTTCGAGCTGCCAAAGTTTGGTCCCACTTGCTAATGCTGTTGGATTCAGCACTGGAAGATCTATATCTTTaGCCATTGCGTGTATACTTT +
Preference number: 4 (lower is better)
Translates to: LRAAKVWSHLLMLLDSALEDLYL*PLRVYF
Trigger: AAAGTATACACGCAATGGCCAAAGATATAGATCTTC...CAGTGCTGAATCCAACAGCATTAGCAAGTGGGACCAAACTTTGGCAGCTCGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp TTTTCGTGTAGCCAAATGGAATGTTTCATTTGGCCGATAAAACCAACAGCCGTATACCAGTGTCAGAAGTaGCTGAGGAGATCATGCTGT +
Preference number: 4 (lower is better)
Translates to: FSCSQMECFIWPIKPTAVYQCQK*LRRSCC
Trigger: ACAGCATGATCTCCTCAGCCACTTCTGACACTGGTA...TACGGCTGTTGGTTTTATCGGCCAAATGAAACATTCCATTTGGCTACACGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCATAGAATCTATGTCTTaGTACTTGTTTGCCATCATG +
Preference number: 4 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCIESMS*YLFAIM
Trigger: CATGATGGCAAACAAGTACCAAGACATAGATTCTAT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTATGTGGTTGTAGATTaGCCTCCGCAGGTTCAACAT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLYVVVD*PPQVQH
Trigger: ATGTTGAACCTGCGGAGGCCAATCTACAACCACATA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCTTTGGGGTAGACTGTaGGGGTGTATAGGGCATGAG +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFLWGRL*GCIGHE
Trigger: CTCATGCCCTATACACCCCCACAGTCTACCCCAAAG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCTTTGGGGTAGACTGTaGGGGTGTATAGGGCATGAG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSLWGRL*GCIGHE
Trigger: CTCATGCCCTATACACCCCCACAGTCTACCCCAAAG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCTGGAGTCCCTACCATaGGGGCTACTCCTTGATTCA +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSLESLP*GLLLDS
Trigger: TGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTATACGGACTTCCACCTaGTGCTGGAGTCCCTACCAT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSIRTST*CWSPYH
Trigger: ATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTAT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCATACGGACTTCCACCTaGTGCTGGAGTCCCTACCAT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFIRTST*CWSPYH
Trigger: ATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTAT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCAAACATGGGCGTTGTTaGCTGCTGTATGACAGGGGG +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFKHGRC*LLYDRG
Trigger: CCCCCTGTCATACAGCAGCCAACAACGCCCATGTTT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTAAACATGGGCGTTGTTaGCTGCTGTATGACAGGGGG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSKHGRC*LLYDRG
Trigger: CCCCCTGTCATACAGCAGCCAACAACGCCCATGTTT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTGTTCTTTGGACAAATaGACATCCCGTCTTCGAGCT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLCSLDK*TSRLRA
Trigger: AGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGGGCATCTGCCATGGTaGTGTGTGCCCCTTTACTTT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFGHLPW*CVPLYF
Trigger: AAAGTAAAGGGGCACACACCACCATGGCAGATGCCC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTAACAAGGCCATCAACTaGGCCCTGCAAAGGTGGAAG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSNKAIN*ALQRWK
Trigger: CTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCAACAAGGCCATCAACTaGGCCCTGCAAAGGTGGAAG +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFNKAIN*ALQRWK
Trigger: CTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTATTGAGCATCCCCATTaGTGTTGGTGGTGGCACCAC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSIEHPH*CWWWHH
Trigger: GTGGTGCCACCACCAACACCAATGGGGATGCTCAAT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
3UTR CAA 72 bp GAAACAAACGTTCAAGCTGAAAGCTGTAACATCCATTaGGAGATTTTACACACCTGTCCCTTACCCACTCAG +
Preference number: 4 (lower is better)
Translates to: ETNVQAESCNIH*EILHTCPLPTQ
Trigger: CTGAGTGGGTAAGGGACAGGTGTGTAAAATCTCCAAATGGATGTTACAGCTTTCAGCTTGAACGTTTGTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTAGAAAGGTTCAGCTATaGGCTGCCCTTGGTGATTCC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSRKVQL*AALGDS
Trigger: GGAATCACCAAGGGCAGCTCATAGCTGAACCTTTCT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTCGCTTATAGATGGCTaGATTGGGAACGTTATAACG +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLSLIDG*IGNVIT
Trigger: CGTTATAACGTTCCCAATTCAGCCATCTATAAGCGA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTCTTCTTTGCCTGCATaGCTTGCTGCAGTTTTAGAA +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLSSLPA*LAAVLE
Trigger: TTCTAAAACTGCAGCAAGTCATGCAGGCAAAGAAGA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GTCTGTATTCTTCTCATCATCCCCTTTATCTGCATTTGCAAACACAGAGGCCACTCAAACATATGCTCCTaGAATAAATCAAGTCGCCGA +
Preference number: 4 (lower is better)
Translates to: VCILLIIPFICICKHRGHSNICS*NKSSRR
Trigger: TCGGCGACTTGATTTATTTCAGGAGCATATGTTTGA...GTGGCCTCTGTGTTTGCAAATGCAGATAAAGGGGATGATGAGAAGAATACAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCCATTTTTCACCAGCTaGATCCTCCCACAGTCTCTC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSPFFTS*ILPQSL
Trigger: GAGAGACTGTGGGAGGATTCAGCTGGTGAAAAATGG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTACCTCTTCAAACCCTTaGACTTCTTCATCTGCTTGT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLTSSNP*TSSSAC
Trigger: ACAAGCAGATGAAGAAGTTCAAGGGTTTGAAGAGGT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTACTGGATAGCCTCCTaGGACCCAACATCTCACTGT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFYWIAS*DPTSHC
Trigger: ACAGTGAGATGTTGGGTCTCAGGAGGCTATCCAGTA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGTGTCAACTGCTGATTaGGCATCCCCATTGGTGTTG +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFVSTAD*ASPLVL
Trigger: CAACACCAATGGGGATGCTCAATCAGCAGTTGACAC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGTAGGCACAGAATGGTaGCCGTCATCAAAGTCTCCA +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFVGTEW*PSSKSP
Trigger: TGGAGACTTTGATGACGGGCACCATTCTGTGCCTAC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TCCAGTCCAGCCAGGGTTGGTAGTAGGACCATGTCTCAAGAAAAGAAAGAAAGACTTATAGTAGGCCTTTaGATTGTTAAAAAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: SSPARVGSRTMSQEKKERLIVGL*IVKKQL
Trigger: CAGCTGCTTTTTAACAATGCAAAGGCCTACTATAAG...TCTTTCTTTCTTTTCTTGAGACATGGTCCTACTACCAACCCTGGCTGGACTGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR GCA 90 bp TTCTCATCATCCCCTTTATCTGCATTTGCAAACACAGAGGCCACTCGGACCACATATATCTTTGGCCATTaGGTGTATACTTTTGTAGCT +
Preference number: 4 (lower is better)
Translates to: FSSSPLSAFANTEATRTTYIFGH*VYTFVA
Trigger: AGCTACAAAAGTATACACGCAATGGCCAAAGATATA...TGTGGTCCGAGTGGCCTCTGTGTTTGCAAATGCAGATAAAGGGGATGATGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCAGGCTGCTTTTATTGTaGGAAGGACCTGTCAGCCTG +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFRLLLL*EGPVSL
Trigger: CAGGCTGACAGGTCCTTCGCACAATAAAAGCAGCCT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTAGGCTGCTTTTATTGTaGGAAGGACCTGTCAGCCTG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSRLLLL*EGPVSL
Trigger: CAGGCTGACAGGTCCTTCGCACAATAAAAGCAGCCT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTGGCTGAGGAGATCATaGTGTCTCCGTCCTCAATGT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSWLRRS*CLRPQC
Trigger: ACATTGAGGACGGAGACAGCATGATCTCCTCAGCCA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTATCATCCCCTTTATCTaGATTTGCAAACACAGAGGC +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLIIPFI*ICKHRG
Trigger: GCCTCTGTGTTTGCAAATGCAGATAAAGGGGATGAT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTAGAACTTTCCTTCTTTaGACTGCCTTTGGCAGACTT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLRTFLL*TAFGRL
Trigger: AAGTCTGCCAAAGGCAGTGCAAAGAAGGAAAGTTCT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTGCCATGGTGGTGTGTaGCCCTTTACTTTTGAGCCA +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSCHGGV*PFTFEP
Trigger: TGGCTCAAAAGTAAAGGGGCACACACCACCATGGCA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTGCTGGAAGGAGAGGTaGCTCTTCTTCTCTTGGAAC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFCWKER*LFFSWN
Trigger: GTTCCAAGAGAAGAAGAGCCACCTCTCCTTCCAGCA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGGTGTAGGCACAGAATaGTGCCCGTCATCAAAGTCT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFGVGTE*CPSSKS
Trigger: AGACTTTGATGACGGGCACCATTCTGTGCCTACACC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGGTGTAGGCACAGAATaGTGCCCGTCATCAAAGTCT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSGVGTE*CPSSKS
Trigger: AGACTTTGATGACGGGCACCATTCTGTGCCTACACC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCTACAGTTGGAAGATTaGACAGTCTTCTCCTTTTCC +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLLQLED*TVFSFS
Trigger: GGAAAAGGAGAAGACTGTCCAATCTTCCAACTGTAG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp ACATTTTCTAGGTTGTATGCCTGTCGGATGTTGAGAGTGTCTCGAAGCATTAAATTGATTTCTCCGCTTTaGAGCCCTAATGAACAGCTC +
Preference number: 4 (lower is better)
Translates to: TFSRLYACRMLRVSRSIKLISPL*SPNEQL
Trigger: GAGCTGTTCATTAGGGCTCCAAAGCGGAGAAATCAA...TTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGAAAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp CTGTATGTACGATGTAAGCCTGAGAGGCCTGTAGTACCTGAGGAATCTTCACTTTTTTCATCAAGTCAATaGGCTGAGAAACCACTTCAT +
Preference number: 4 (lower is better)
Translates to: LYVRCKPERPVVPEESSLFSSSQ*AEKPLH
Trigger: ATGAAGTGGTTTCTCAGCCCATTGACTTGATGAAAA...AAGTGAAGATTCCTCAGGTACTACAGGCCTCTCAGGCTTACATCGTACATACAG
42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTGTCCTGATGGATTTGTaGCTACAACTATGGCTTCAA +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLVLMDL*LQLWLQ
Trigger: TTGAAGCCATAGTTGTAGCCACAAATCCATCAGGAC...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TCCGACATGATACATGCTGTTCTTAAAGCTGCAGTCCTGGCTGTATGTACGATGCTGGATATTGCACTTTaGAAGGCAGTTTCTGAAAAA +
Preference number: 4 (lower is better)
Translates to: SDMIHAVLKAAVLAVCTMLDIAL*KAVSEK
Trigger: TTTTTCAGAAACTGCCTTCCAAAGTGCAATATCCAG...CATCGTACATACAGCCAGGACTGCAGCTTTAAGAACAGCATGTATCATGTCGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp GCCGATAAAACCAACAGCCGTACAACCATTTTTCACCAGCTGAATCCTCCCACAGAAGATCTATATCTTTaGCCATTGCGTGTATACTTT +
Preference number: 4 (lower is better)
Translates to: ADKTNSRTTIFHQLNPPTEDLYL*PLRVYF
Trigger: AAAGTATACACGCAATGGCCAAAGATATAGATCTTC...TGTGGGAGGATTCAGCTGGTGAAAAATGGTTGTACGGCTGTTGGTTTTATCGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGACAAGCGACCCCCTTaGACTGCTCTTTTATTACGG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSDKRPP*TALLLR
Trigger: CCGTAATAAAAGAGCAGTCCAAGGGGGTCGCTTGTC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TCTAGGTTGTATGCCTGTCGGATGTTGAGAGTGTCTCGAAGCATTAAATCCCGTTTCTTTGAAGGCAAATaGAAGAAAGGTTCAGCTATG +
Preference number: 4 (lower is better)
Translates to: SRLYACRMLRVSRSIKSRFFEGK*KKGSAM
Trigger: CATAGCTGAACCTTTCTTCCATTTGCCTTCAAAGAA...ACGGGATTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp CAAATGGAATGTTTCATTTGGCCGATAAAACCAACAGCCGTACAACCATTTTTCTACCAGTGTCAGAAGTaGCTGAGGAGATCATGCTGT +
Preference number: 4 (lower is better)
Translates to: QMECFIWPIKPTAVQPFFYQCQK*LRRSCC
Trigger: ACAGCATGATCTCCTCAGCCACTTCTGACACTGGTA...GAAAAATGGTTGTACGGCTGTTGGTTTTATCGGCCAAATGAAACATTCCATTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTGTTTATTGGGAGAGTTaGGATCCACAGCAGGAATTT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLVYWES*DPQQEF
Trigger: AAATTCCTGCTGTGGATCCCAACTCTCCCAATAAAC...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCGAGCTGCCAAAGTTTaGTCCCACTTGCTAATGCTG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSRAAKV*SHLLML
Trigger: CAGCATTAGCAAGTGGGACCAAACTTTGGCAGCTCG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGGCTCTCCTGTTCTTTaGACAAATGGACATCCCGTC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFGSPVL*TNGHPV
Trigger: GACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGGCTCTCCTGTTCTTTaGACAAATGGACATCCCGTC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSGSPVL*TNGHPV
Trigger: GACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGTCCTCTTCACTCTCTaGTCCATACTGAAGTGCCAT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFVLFTL*SILKCH
Trigger: ATGGCACTTCAGTATGGATCAGAGAGTGAAGAGGAC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GTCTGTATTCTTCTCATCATCCCCTTTATCTGCATTTGCAAACACAGAGGCCACTCTTTAGCTTTGTTCTaGTCTGTTGAAGTGATATGG +
Preference number: 4 (lower is better)
Translates to: VCILLIIPFICICKHRGHSLALF*SVEVIW
Trigger: CCATATCACTTCAACAGATCAGAACAAAGCTAAAGA...GTGGCCTCTGTGTTTGCAAATGCAGATAAAGGGGATGATGAGAAGAATACAGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp TCATCTACAACTTTAGCAGAGAGTGAAAACCTCTTCAAACCCTTGAACTTCTTCTGGCATTGCGGAACATaGGTTTCATGTCTTCCATCA +
Preference number: 4 (lower is better)
Translates to: SSTTLAESENLFKPLNFFWHCGT*VSCLPS
Trigger: TGATGGAAGACATGAAACTCATGTTCCGCAATGCCA...GAAGAAGTTCAAGGGTTTGAAGAGGTTTTCACTCTCTGCTAAAGTTGTAGATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp AGGTTCAACATAGACATAATCTCCGACATGATACATGCTGTTCTTAAAGCTGCATGGCATTGCGGAACATaGGTTTCATGTCTTCCATCA +
Preference number: 4 (lower is better)
Translates to: RFNIDIISDMIHAVLKAAWHCGT*VSCLPS
Trigger: TGATGGAAGACATGAAACTCATGTTCCGCAATGCCA...TGCAGCTTTAAGAACAGCATGTATCATGTCGGAGATTATGTCTATGTTGAACCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR TCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCATCCTGATGACTCATaGCTGACACAAAAAGGTTAT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLHPDDS*LTQKGY
Trigger: ATAACCTTTTTGTGTCAGTCATGAGTCATCAGGATG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTCAAACATATGCTCCTaGAATAAATCAAGTCGCCGA +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLSNICS*NKSSRR
Trigger: TCGGCGACTTGATTTATTTCAGGAGCATATGTTTGA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTAGGGACAAATCTAACTaGACTGATGGGCATGGTCCA +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSRDKSN*TDGHGP
Trigger: TGGACCATGCCCATCAGTTCAGTTAGATTTGTCCCT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTAACTTTAGCAGAGAGTaGAAACCTCTTCAAACCCTT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLNFSRE*KPLQTL
Trigger: AAGGGTTTGAAGAGGTTTTCACTCTCTGCTAAAGTT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGGTGAGGGTTCCTTCTaGGGAATGATTGGTTTTCTG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSGEGSF*GMIGFL
Trigger: CAGAAAACCAATCATTCCTCAGAAGGAACCCTCACC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGCTCACAGAGGAGTCTaGCCTGTTCATCCTTATAGT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFAHRGV*PVHPYS
Trigger: ACTATAAGGATGAACAGGGCAGACTCCTCTGTGAGC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTATGGCTTCAAGAAGCTaGTCCAGGATCTCCTTCAGA +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSMASRS*SRISFR
Trigger: TCTGAAGGAGATCCTGGAGCAGCTTCTTGAAGCCAT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCTGAACAAAATGTAGCCACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTAGGCTGCTTTTATTGTaGGAAGGACCTGTCAGCCTG +
Preference number: 4 (lower is better)
Translates to: AEQNVATHVDFSFRTFLLRLLLL*EGPVSL
Trigger: CAGGCTGACAGGTCCTTCGCACAATAAAAGCAGCCT...AAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGTGGCTACATTTTGTTCAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGGAAGTGATGCTCTCTaGTTCAGATTCCCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSGSDAL*FRFPFF
Trigger: GAAGAAGGGGAATCTGAAGCAGAGAGCATCACTTCC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTAAGCTCCTTCTTCTTTaGCTGCATGACTTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSKLLLL*LHDLLQ
Trigger: CTGCAGCAAGTCATGCAGGCAAAGAAGAAGGAGCTT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTGTCTTGGTACTTGTTTaGCATCATGTGACTTCGAAT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLVLVLV*HHVTSN
Trigger: ATTCGAAGTCACATGATGGCAAACAAGTACCAAGAC...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCCCTTTATCTGCATTTaGAAACACAGAGGCCACTCG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSPFICI*KHRGHS
Trigger: CGAGTGGCCTCTGTGTTTGCAAATGCAGATAAAGGG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCAGGGCCATAAAAATATaGAGCTCCATCTCGGACCCA +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFRAIKI*SSISDP
Trigger: TGGGTCCGAGATGGAGCTGCATATTTTTATGGCCCT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTTTCCTTCTTTGCACTaGCTTTGGCAGACTTTGGGG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSFPSLH*LWQTLG
Trigger: CCCCAAAGTCTGCCAAAGGCAGTGCAAAGAAGGAAA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTTTCCTTCTTTGCACTaGCTTTGGCAGACTTTGGGG +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFFPSLH*LWQTLG
Trigger: CCCCAAAGTCTGCCAAAGGCAGTGCAAAGAAGGAAA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCACTTCATAATAGTCTaGTTGATTTCTCCGCTTTGG +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLHFIIV*LISPLW
Trigger: CCAAAGCGGAGAAATCAACCAGACTATTATGAAGTG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCTGAGTGCTGGAGAAAGAAGGATCTCTCCATTTTTGCAGAGTTCATCACGAATCTGGATATTGCACTTTaGAAGGCAGTTTCTGAAAAA +
Preference number: 4 (lower is better)
Translates to: AECWRKKDLSIFAEFITNLDIAL*KAVSEK
Trigger: TTTTTCAGAAACTGCCTTCCAAAGTGCAATATCCAG...ATTCGTGATGAACTCTGCAAAAATGGAGAGATCCTTCTTTCTCCAGCACTCAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp GCTGAACAAAATGTAGCCACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTGACAAGCGACCCCCTTaGACTGCTCTTTTATTACGG +
Preference number: 4 (lower is better)
Translates to: AEQNVATHVDFSFRTFLLDKRPP*TALLLR
Trigger: CCGTAATAAAAGAGCAGTCCAAGGGGGTCGCTTGTC...AAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGTGGCTACATTTTGTTCAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTGAACTCGCTTATAGATaGCTGAATTGGGAACGTTAT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLELAYR*LNWERY
Trigger: ATAACGTTCCCAATTCAGCCATCTATAAGCGAGTTC...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTACCAGTGTCAGAAGTaGCTGAGGAGATCATGCTGT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFYQCQK*LRRSCC
Trigger: ACAGCATGATCTCCTCAGCCACTTCTGACACTGGTA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTACCAGTGTCAGAAGTaGCTGAGGAGATCATGCTGT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSYQCQK*LRRSCC
Trigger: ACAGCATGATCTCCTCAGCCACTTCTGACACTGGTA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TCTAGGTTGTATGCCTGTCGGATGTTGAGAGTGTCTCGAAGCATTAAATCCCGTATAGAATCTATGTCTTaGTACTTGTTTGCCATCATG +
Preference number: 4 (lower is better)
Translates to: SRLYACRMLRVSRSIKSRIESMS*YLFAIM
Trigger: CATGATGGCAAACAAGTACCAAGACATAGATTCTAT...ACGGGATTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp ACATTTTCTAGGTTGTATGCCTGTCGGATGTTGAGAGTGTCTCGAAGCATTAAAGTTTATTGGGAGAGTTaGGATCCACAGCAGGAATTT +
Preference number: 4 (lower is better)
Translates to: TFSRLYACRMLRVSRSIKVYWES*DPQQEF
Trigger: AAATTCCTGCTGTGGATCCCAACTCTCCCAATAAAC...TTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGAAAATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGGTATAGCTGAGTGCTaGAGAAAGAAGGATCTCTCC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSGIAEC*RKKDLS
Trigger: GGAGAGATCCTTCTTTCTCCAGCACTCAGCTATACC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTAAAGTAGTGGCAACCTaGCTCACCATTGGACATCTC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSKVVAT*LTIGHL
Trigger: GAGATGTCCAATGGTGAGCCAGGTTGCCACTACTTT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCAAAGTAGTGGCAACCTaGCTCACCATTGGACATCTC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFKVVAT*LTIGHL
Trigger: GAGATGTCCAATGGTGAGCCAGGTTGCCACTACTTT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTATGTTCTGTTTCTTCTaGATGAATGAAGATAGGGCC +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLMFCFF*MNEDRA
Trigger: GGCCCTATCTTCATTCATCCAGAAGAAACAGAACAT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTTCTGGTATTTCAGTTaGCCTGCAGGAGAGGAAGTC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFFWYFS*PAGEEV
Trigger: GACTTCCTCTCCTGCAGGCCAACTGAAATACCAGAA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTTCTGGTATTTCAGTTaGCCTGCAGGAGAGGAAGTC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSFWYFS*PAGEEV
Trigger: GACTTCCTCTCCTGCAGGCCAACTGAAATACCAGAA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCAGAATGTCATTTTCTaGTATTTCAGTTGGCCTGCA +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLQNVIF*YFSWPA
Trigger: TGCAGGCCAACTGAAATACCAGAAAATGACATTCTG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCCATTCTGTATCCTCTaGGCAATGGTCTTGAGATCT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFPFCIL*AMVLRS
Trigger: AGATCTCAAGACCATTGCTCAGAGGATACAGAATGG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGCATCCTTGAATACTTaGGACCCAGGCTCATTGTAT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFASLNT*DPGSLY
Trigger: ATACAATGAGCCTGGGTCTCAAGTATTCAAGGATGC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGCATCCTTGAATACTTaGGACCCAGGCTCATTGTAT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSASLNT*DPGSLY
Trigger: ATACAATGAGCCTGGGTCTCAAGTATTCAAGGATGC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTGGCATTGCGGAACATaGGTTTCATGTCTTCCATCA +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSWHCGT*VSCLPS
Trigger: TGATGGAAGACATGAAACTCATGTTCCGCAATGCCA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTGGCATTGCGGAACATaGGTTTCATGTCTTCCATCA +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFWHCGT*VSCLPS
Trigger: TGATGGAAGACATGAAACTCATGTTCCGCAATGCCA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGTTTTGTGGTATAGCTaGGTGCTGGAGAAAGAAGGA +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFVLWYS*VLEKEG
Trigger: TCCTTCTTTCTCCAGCACTCAGCTATACCACAAAAC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGTTTTGTGGTATAGCTaGGTGCTGGAGAAAGAAGGA +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSVLWYS*VLEKEG
Trigger: TCCTTCTTTCTCCAGCACTCAGCTATACCACAAAAC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGAGATGGAGCTTCAATaGCTTCACTATCCTCTTCTC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSEMELQ*LHYPLL
Trigger: GAGAAGAGGATAGTGAAGTCATTGAAGCTCCATCTC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCTTATAGTAGGCCTTTaGATTGTTAAAAAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLLIVGL*IVKKQL
Trigger: CAGCTGCTTTTTAACAATGCAAAGGCCTACTATAAG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTATCATCTTCATCGTCTaGTTCTCCTTTCTGAACAAA +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLIIFIV*FSFLNK
Trigger: TTTGTTCAGAAAGGAGAAGCAGACGATGAAGATGAT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGCCTGCATGACTTGCTaGAGTTTTAGAACTCGCTTA +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSACMTC*SFRTRL
Trigger: TAAGCGAGTTCTAAAACTGCAGCAAGTCATGCAGGC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTTTGCCTGCATGACTTaGTGCAGTTTTAGAACTCGC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFFACMT*CSFRTR
Trigger: GCGAGTTCTAAAACTGCAGCAAGTCATGCAGGCAAA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTTTGCCTGCATGACTTaGTGCAGTTTTAGAACTCGC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSFACMT*CSFRTR
Trigger: GCGAGTTCTAAAACTGCAGCAAGTCATGCAGGCAAA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTAATAGGATCTACAGTTaGAAGATTGGACAGTCTTCT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLNRIYS*KIGQSS
Trigger: AGAAGACTGTCCAATCTTCCAACTGTAGATCCTATT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTTGATTTCTCCGCTTTaGAGCCCTAATGAACAGCTC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSLISPL*SPNEQL
Trigger: GAGCTGTTCATTAGGGCTCCAAAGCGGAGAAATCAA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTTGATTTCTCCGCTTTaGAGCCCTAATGAACAGCTC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFLISPL*SPNEQL
Trigger: GAGCTGTTCATTAGGGCTCCAAAGCGGAGAAATCAA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTTTTCATCAAGTCAATaGGCTGAGAAACCACTTCAT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLFSSSQ*AEKPLH
Trigger: ATGAAGTGGTTTCTCAGCCCATTGACTTGATGAAAA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
40% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTTGTGGCTACAACTATaGCTTCAAGAAGCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFLWLQL*LQEAAP
Trigger: TGGAGCAGCTTCTTGAAGCCATAGTTGTAGCCACAA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTTGTGGCTACAACTATaGCTTCAAGAAGCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSLWLQL*LQEAAP
Trigger: TGGAGCAGCTTCTTGAAGCCATAGTTGTAGCCACAA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCTGGATATTGCACTTTaGAAGGCAGTTTCTGAAAAA +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLLDIAL*KAVSEK
Trigger: TTTTTCAGAAACTGCCTTCCAAAGTGCAATATCCAG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTTCTTTGAAGGCAAATaGAAGAAAGGTTCAGCTATG +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLFFEGK*KKGSAM
Trigger: CATAGCTGAACCTTTCTTCCATTTGCCTTCAAAGAA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp CATCTGCTTGTCACTCTCATTATAGCGGCTCTCACAAAGCAGAATGTCATTTTCTATAGATGGCTGAATTaGGAACGTTATAACGTTTGG +
Preference number: 4 (lower is better)
Translates to: HLLVTLIIAALTKQNVIFYRWLN*ERYNVW
Trigger: CCAAACGTTATAACGTTCCCAATTCAGCCATCTATA...GAAAATGACATTCTGCTTTGTGAGAGCCGCTATAATGAGAGTGACAAGCAGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTATGTGGTTGTAGATTaGCCTCCGCAGGTTCAACAT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSYVVVD*PPQVQH
Trigger: ATGTTGAACCTGCGGAGGCCAATCTACAACCACATA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTATGTGGTTGTAGATTaGCCTCCGCAGGTTCAACAT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFYVVVD*PPQVQH
Trigger: ATGTTGAACCTGCGGAGGCCAATCTACAACCACATA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTGTTCTTTGGACAAATaGACATCCCGTCTTCGAGCT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFCSLDK*TSRLRA
Trigger: AGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTCGCTTATAGATGGCTaGATTGGGAACGTTATAACG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSSLIDG*IGNVIT
Trigger: CGTTATAACGTTCCCAATTCAGCCATCTATAAGCGA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTCGCTTATAGATGGCTaGATTGGGAACGTTATAACG +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFSLIDG*IGNVIT
Trigger: CGTTATAACGTTCCCAATTCAGCCATCTATAAGCGA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTCTTCTTTGCCTGCATaGCTTGCTGCAGTTTTAGAA +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFSSLPA*LAAVLE
Trigger: TTCTAAAACTGCAGCAAGTCATGCAGGCAAAGAAGA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCAAAAAGGTTATGGATaGGCTCTTGAATCAGCAACG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSQKGYG*ALESAT
Trigger: CGTTGCTGATTCAAGAGCTCATCCATAACCTTTTTG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCACCTCTTCAAACCCTTaGACTTCTTCATCTGCTTGT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFTSSNP*TSSSAC
Trigger: ACAAGCAGATGAAGAAGTTCAAGGGTTTGAAGAGGT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCTCTCATTTCACTGCTaGACAAAATGTAGCCACTCA +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFLSFHC*TKCSHS
Trigger: TGAGTGGCTACATTTTGTTCAGCAGTGAAATGAGAG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCTCTCATTTCACTGCTaGACAAAATGTAGCCACTCA +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSLSFHC*TKCSHS
Trigger: TGAGTGGCTACATTTTGTTCAGCAGTGAAATGAGAG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTATATCTTTGGCCATTaGGTGTATACTTTTGTAGCT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLYIFGH*VYTFVA
Trigger: AGCTACAAAAGTATACACGCAATGGCCAAAGATATA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTTTCTTCACCAAGGCTaGTTTTATTGTGCGAAGGAC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSFLHQG*FYCAKD
Trigger: GTCCTTCGCACAATAAAAGCAGCCTTGGTGAAGAAA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTTTCTTCACCAAGGCTaGTTTTATTGTGCGAAGGAC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFFLHQG*FYCAKD
Trigger: GTCCTTCGCACAATAAAAGCAGCCTTGGTGAAGAAA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCATCATCCCCTTTATCTaGATTTGCAAACACAGAGGC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFIIPFI*ICKHRG
Trigger: GCCTCTGTGTTTGCAAATGCAGATAAAGGGGATGAT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTAGAACTTTCCTTCTTTaGACTGCCTTTGGCAGACTT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSRTFLL*TAFGRL
Trigger: AAGTCTGCCAAAGGCAGTGCAAAGAAGGAAAGTTCT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCTACAGTTGGAAGATTaGACAGTCTTCTCCTTTTCC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFLQLED*TVFSFS
Trigger: GGAAAAGGAGAAGACTGTCCAATCTTCCAACTGTAG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCTGAACAAAATGTAGCCACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTTTGTGGCTACAACTATaGCTTCAAGAAGCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: AEQNVATHVDFSFRTFLLLWLQL*LQEAAP
Trigger: TGGAGCAGCTTCTTGAAGCCATAGTTGTAGCCACAA...AAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGTGGCTACATTTTGTTCAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTATTGCATAATAGTCTaGATATTGCACTTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLYCIIV*ILHFGR
Trigger: CCTTCCAAAGTGCAATATCCAGACTATTATGCAATA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp TTTTCACCAGCTGAATCCTCCCACAGTCTCTCAATACACACTATATGTGGTTGTTATTGCATAATAGTCTaGATATTGCACTTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: FSPAESSHSLSIHTICGCYCIIV*ILHFGR
Trigger: CCTTCCAAAGTGCAATATCCAGACTATTATGCAATA...ACAACCACATATAGTGTGTATTGAGAGACTGTGGGAGGATTCAGCTGGTGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTGAAGATCTATATCTTTaGCCATTGCGTGTATACTTT +
Preference number: 4 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLEDLYL*PLRVYF
Trigger: AAAGTATACACGCAATGGCCAAAGATATAGATCTTC...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGTAGATCAAAGACTCTaGTTCATTGTAGGTACAGGC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFVDQRL*FIVGTG
Trigger: GCCTGTACCTACAATGAACCAGAGTCTTTGATCTAC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGTTTATTGGGAGAGTTaGGATCCACAGCAGGAATTT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSVYWES*DPQQEF
Trigger: AAATTCCTGCTGTGGATCCCAACTCTCCCAATAAAC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCTGATGACTCATGACTaGCACAAAAAGGTTATGGAT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSLMTHD*HKKVMD
Trigger: ATCCATAACCTTTTTGTGTCAGTCATGAGTCATCAG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCATCCTGATGACTCATaGCTGACACAAAAAGGTTAT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFHPDDS*LTQKGY
Trigger: ATAACCTTTTTGTGTCAGTCATGAGTCATCAGGATG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCATCCTGATGACTCATaGCTGACACAAAAAGGTTAT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSHPDDS*LTQKGY
Trigger: ATAACCTTTTTGTGTCAGTCATGAGTCATCAGGATG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCAGCTCTATTGTCATCTaGGTTGTCTGTATTCTTCTC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFSSIVI*VVCILL
Trigger: GAGAAGAATACAGACAACTCAGATGACAATAGAGCT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTAGCTCTATTGTCATCTaGGTTGTCTGTATTCTTCTC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSSSIVI*VVCILL
Trigger: GAGAAGAATACAGACAACTCAGATGACAATAGAGCT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTAACTTTAGCAGAGAGTaGAAACCTCTTCAAACCCTT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSNFSRE*KPLQTL
Trigger: AAGGGTTTGAAGAGGTTTTCACTCTCTGCTAAAGTT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTGTTGGATTCAGCACTaGGTCCTTCAATGTATTTCA +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFCWIQH*VLQCIS
Trigger: TGAAATACATTGAAGGACTCAGTGCTGAATCCAACA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTGTTGGATTCAGCACTaGGTCCTTCAATGTATTTCA +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSCWIQH*VLQCIS
Trigger: TGAAATACATTGAAGGACTCAGTGCTGAATCCAACA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GTCACTCTCATTATAGCGGCTCTCACAAAGCAGAATGTCATTTTCTGGTATTTCTATATCTTTGGCCATTaGGTGTATACTTTTGTAGCT +
Preference number: 4 (lower is better)
Translates to: VTLIIAALTKQNVIFWYFYIFGH*VYTFVA
Trigger: AGCTACAAAAGTATACACGCAATGGCCAAAGATATA...GAAATACCAGAAAATGACATTCTGCTTTGTGAGAGCCGCTATAATGAGAGTGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR GCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGTCTTGGTACTTGTTTaGCATCATGTGACTTCGAAT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFVLVLV*HHVTSN
Trigger: ATTCGAAGTCACATGATGGCAAACAAGTACCAAGAC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGTCTTGGTACTTGTTTaGCATCATGTGACTTCGAAT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSVLVLV*HHVTSN
Trigger: ATTCGAAGTCACATGATGGCAAACAAGTACCAAGAC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp CAAAATGTAGCCACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTTGCACTCTACAGTTGGAAGATTaGACAGTCTTCTCCTTTTCC +
Preference number: 4 (lower is better)
Translates to: QNVATHVDFSFRTFLLCTLQLED*TVFSFS
Trigger: GGAAAAGGAGAAGACTGTCCAATCTTCCAACTGTAG...AGTGCAAAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGTGGCTACATTTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCACTTCATAATAGTCTaGTTGATTTCTCCGCTTTGG +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFHFIIV*LISPLW
Trigger: CCAAAGCGGAGAAATCAACCAGACTATTATGAAGTG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGAACTCGCTTATAGATaGCTGAATTGGGAACGTTAT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFELAYR*LNWERY
Trigger: ATAACGTTCCCAATTCAGCCATCTATAAGCGAGTTC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGAACTCGCTTATAGATaGCTGAATTGGGAACGTTAT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSELAYR*LNWERY
Trigger: ATAACGTTCCCAATTCAGCCATCTATAAGCGAGTTC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp CAAAATGTAGCCACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTTGCACTGTAGATCAAAGACTCTaGTTCATTGTAGGTACAGGC +
Preference number: 4 (lower is better)
Translates to: QNVATHVDFSFRTFLLCTVDQRL*FIVGTG
Trigger: GCCTGTACCTACAATGAACCAGAGTCTTTGATCTAC...AGTGCAAAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGTGGCTACATTTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTATGGAATGTTTCATTTaGCCGATAAAACCAACAGCC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSMECFI*PIKPTA
Trigger: GGCTGTTGGTTTTATCGGCCAAATGAAACATTCCAT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCATGTTCTGTTTCTTCTaGATGAATGAAGATAGGGCC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFMFCFF*MNEDRA
Trigger: GGCCCTATCTTCATTCATCCAGAAGAAACAGAACAT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTATGTTCTGTTTCTTCTaGATGAATGAAGATAGGGCC +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSMFCFF*MNEDRA
Trigger: GGCCCTATCTTCATTCATCCAGAAGAAACAGAACAT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCAGAATGTCATTTTCTaGTATTTCAGTTGGCCTGCA +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSQNVIF*YFSWPA
Trigger: TGCAGGCCAACTGAAATACCAGAAAATGACATTCTG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCATATTCTGCTTTCTTaGCTGTTTCAAGGTTTCTCC +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFHILLS*LFQGFS
Trigger: GGAGAAACCTTGAAACAGCCAAGAAAGCAGAATATG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR TCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTCTTTAGCTTTGTTCTaGTCTGTTGAAGTGATATGG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSSLALF*SVEVIW
Trigger: CCATATCACTTCAACAGATCAGAACAAAGCTAAAGA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCTTATAGTAGGCCTTTaGATTGTTAAAAAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFLIVGL*IVKKQL
Trigger: CAGCTGCTTTTTAACAATGCAAAGGCCTACTATAAG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTATCATCTTCATCGTCTaGTTCTCCTTTCTGAACAAA +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSIIFIV*FSFLNK
Trigger: TTTGTTCAGAAAGGAGAAGCAGACGATGAAGATGAT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCATTCCTTCTTCACCTaGATATTTGTCATTTCGGAT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFHSFFT*IFVISD
Trigger: ATCCGAAATGACAAATATGCAGGTGAAGAAGGAATG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCATTCCTTCTTCACCTaGATATTTGTCATTTCGGAT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSHSFFT*IFVISD
Trigger: ATCCGAAATGACAAATATGCAGGTGAAGAAGGAATG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTCATTCAGTTTCTGCTaGATTGGAGTCATGTACTTT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSSFSFC*IGVMYF
Trigger: AAAGTACATGACTCCAATGCAGCAGAAACTGAATGA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTTTTCATCAAGTCAATaGGCTGAGAAACCACTTCAT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFFSSSQ*AEKPLH
Trigger: ATGAAGTGGTTTCTCAGCCCATTGACTTGATGAAAA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCTGGATATTGCACTTTaGAAGGCAGTTTCTGAAAAA +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFLDIAL*KAVSEK
Trigger: TTTTTCAGAAACTGCCTTCCAAAGTGCAATATCCAG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTTCTTTGAAGGCAAATaGAAGAAAGGTTCAGCTATG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSFFEGK*KKGSAM
Trigger: CATAGCTGAACCTTTCTTCCATTTGCCTTCAAAGAA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTATAGATGGCTGAATTaGGAACGTTATAACGTTTGG +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFYRWLN*ERYNVW
Trigger: CCAAACGTTATAACGTTCCCAATTCAGCCATCTATA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTATAGATGGCTGAATTaGGAACGTTATAACGTTTGG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSYRWLN*ERYNVW
Trigger: CCAAACGTTATAACGTTCCCAATTCAGCCATCTATA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR GCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTATATCTTTGGCCATTaGGTGTATACTTTTGTAGCT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSYIFGH*VYTFVA
Trigger: AGCTACAAAAGTATACACGCAATGGCCAAAGATATA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTATTGCATAATAGTCTaGATATTGCACTTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSYCIIV*ILHFGR
Trigger: CCTTCCAAAGTGCAATATCCAGACTATTATGCAATA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGAAGATCTATATCTTTaGCCATTGCGTGTATACTTT +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFEDLYL*PLRVYF
Trigger: AAAGTATACACGCAATGGCCAAAGATATAGATCTTC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGAAGATCTATATCTTTaGCCATTGCGTGTATACTTT +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSEDLYL*PLRVYF
Trigger: AAAGTATACACGCAATGGCCAAAGATATAGATCTTC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTATAGAATCTATGTCTTaGTACTTGTTTGCCATCATG +
Preference number: 4 (lower is better)
Translates to: AHILQESLTIQMSNSAQSIESMS*YLFAIM
Trigger: CATGATGGCAAACAAGTACCAAGACATAGATTCTAT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CCA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCATAGAATCTATGTCTTaGTACTTGTTTGCCATCATG +
Preference number: 4 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFIESMS*YLFAIM
Trigger: CATGATGGCAAACAAGTACCAAGACATAGATTCTAT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
3UTR CAA 72 bp AAGTTAAAATTGTCTTCAGCTCTATTGTCATCTGAGTaGTCTGTATTCTTCTCATCATCCCCTTTATCTGCA +
Preference number: 4 (lower is better)
Translates to: KLKLSSALLSSE*SVFFSSSPLSA
Trigger: TGCAGATAAAGGGGATGATGAGAAGAATACAGACAACTCAGATGACAATAGAGCTGAAGACAATTTTAACTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CCA 90 bp CAAAATGTAGCCACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTTGCACTTATTGCATAATAGTCTaGATATTGCACTTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: QNVATHVDFSFRTFLLCTYCIIV*ILHFGR
Trigger: CCTTCCAAAGTGCAATATCCAGACTATTATGCAATA...AGTGCAAAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGTGGCTACATTTTG
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS GCA 90 bp AGGGGTGCCTGCTCGGGGAGAAGCACTCGGCTGCTGTTGCTGTGCTaGTCGCTCTCTCTCCTGCTGCTCAGCAACTTTAGCTGCCCGCTC +
Preference number: 5 (lower is better)
Translates to: RGACSGRSTRLLLLC*SLSLLLLSNFSCPL
Trigger: GAGCGGGCAGCTAAAGTTGCTGAGCAGCAGGAGAGAGAGCGAGCAGCACAGCAACAGCAGCCGAGTGCTTCTCCCCGAGCAGGCACCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112098.11
CDS GCA 90 bp CACAGGGGTGCCTGCTCGGGGAGAAGCACTCGGCTGCTGTTGCTGTaGTGCTCGCTCTCTCTCCTGCTGCTCAGCAACTTTAGCTGCCCG +
Preference number: 5 (lower is better)
Translates to: HRGACSGRSTRLLLL*CSLSLLLLSNFSCP
Trigger: CGGGCAGCTAAAGTTGCTGAGCAGCAGGAGAGAGAGCGAGCAGCACAGCAACAGCAGCCGAGTGCTTCTCCCCGAGCAGGCACCCCTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112098.11
CDS CCA 90 bp CATGCTGCCCATGCTAACAAGGCCATCAACTGGGCCCTGCAAAGGTaGAAGGCCTGGCGGATAGCCACCCATCATGCCTGCAACAGGTGT +
Preference number: 5 (lower is better)
Translates to: HAAHANKAINWALQR*KAWRIATHHACNRC
Trigger: ACACCTGTTGCAGGCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGCATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS CCA 90 bp CATGCTAACAAGGCCATCAACTGGGCCCTGCAAAGGTGGAAGGCCTaGCGGATAGCCACCCATCATGCCTGCAACAGGTGTCAACTGCTG +
Preference number: 5 (lower is better)
Translates to: HANKAINWALQRWKA*RIATHHACNRCQLL
Trigger: CAGCAGTTGACACCTGTTGCAGGCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS GCA 90 bp GGAGAAGCACTCGGCTGCTGTTGCTGTGCTGCTCGCTCTCTCTCCTaGTGCTCAGCAACTTTAGCTGCCCGCTCTTCATATTCTGCTTTC +
Preference number: 5 (lower is better)
Translates to: GEALGCCCCAARSLS*CSATLAARSSYSAF
Trigger: GAAAGCAGAATATGAAGAGCGGGCAGCTAAAGTTGCTGAGCAGCAGGAGAGAGAGCGAGCAGCACAGCAACAGCAGCCGAGTGCTTCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112098.11
CDS GCA 90 bp AGTCTTCTCCTTTTCCTGCTTGGGCCTGGTGTAGGCACAGAATGGTaGCCGTCATCAAAGTCTCCACTGACACTGCTGGAAGGAGAGGTG +
Preference number: 5 (lower is better)
Translates to: SLLLFLLGPGVGTEW*PSSKSPLTLLEGEV
Trigger: CACCTCTCCTTCCAGCAGTGTCAGTGGAGACTTTGATGACGGGCACCATTCTGTGCCTACACCAGGCCCAAGCAGGAAAAGGAGAAGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 14 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000112106.8
ENSMUST00000123678.8
ENSMUST00000136237.8
ENSMUST00000144009.2
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CCA 90 bp GACAGTCTTCTCCTTTTCCTGCTTGGGCCTGGTGTAGGCACAGAATaGTGCCCGTCATCAAAGTCTCCACTGACACTGCTGGAAGGAGAG +
Preference number: 5 (lower is better)
Translates to: DSLLLFLLGPGVGTE*CPSSKSPLTLLEGE
Trigger: CTCTCCTTCCAGCAGTGTCAGTGGAGACTTTGATGACGGGCACCATTCTGTGCCTACACCAGGCCCAAGCAGGAAAAGGAGAAGACTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 14 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000112106.8
ENSMUST00000123678.8
ENSMUST00000136237.8
ENSMUST00000144009.2
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CCA 90 bp CCTGTTGTCCATACGGACTTCCACCTGGTGCTGGAGTCCCTACCATaGGGGCTACTCCTTGATTCATCACACCTGCAACAGGTGTCAACT +
Preference number: 5 (lower is better)
Translates to: PVVHTDFHLVLESLP*GLLLDSSHLQQVST
Trigger: AGTTGACACCTGTTGCAGGTGTGATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATGGACAACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112092.8
CDS CCA 90 bp TCCCAAAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTaGAGTCCCTACCATGGGGGCTACTCCTTGATTCATCACACCTGC +
Preference number: 5 (lower is better)
Translates to: SQNSYLLSIRTSTWC*SPYHGGYSLIHHTC
Trigger: GCAGGTGTGATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112092.8
CDS-3UTR CAA 90 bp GGCCGTGTTGGAAAGACAGGGTTGTGGTTGCTGAGCACTATGGTACCTGCCCTTCCAAGGCTGCTTTTATaGTGCGAAGGACCTGTCAGC +
Preference number: 5 (lower is better)
Translates to: GRVGKTGLWLLSTMVPALPRLLL*CEGPVS
Trigger: GCTGACAGGTCCTTCGCACAATAAAAGCAGCCTTGG...AAGGGCAGGTACCATAGTGCTCAGCAACCACAACCCTGTCTTTCCAACACGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CAA 90 bp ACAGAGGCCACTCGGACCACAGGCAAAGGCACATCCCGAGGGACAAATCTAACTAGCTATGAGCTGCCCTaGGTGATTCCTACAGCTCCT +
Preference number: 5 (lower is better)
Translates to: TEATRTTGKGTSRGTNLTSYELP*VIPTAP
Trigger: AGGAGCTGTAGGAATCACCAAGGGCAGCTCATAGCT...AGTTAGATTTGTCCCTCGGGATGTGCCTTTGCCTGTGGTCCGAGTGGCCTCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCAGCACTCGGCTGCTGTaGCTGTGCTGCTCGCTCTCT +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCSTRLL*LCCSLS
Trigger: AGAGAGCGAGCAGCACAGCAACAGCAGCCGAGTGCT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS TCA 90 bp CGTGCAGCAGCTAAAGCAGCGTCCTCTTCACTCTCTGATCCATACTaGAGTGCCATGGTAATTGCTGACAAGCGACCCCCTTGGACTGCT +
Preference number: 5 (lower is better)
Translates to: RAAAKAASSSLSDPY*SAMVIADKRPPWTA
Trigger: AGCAGTCCAAGGGGGTCGCTTGTCAGCAATTACCATGGCACTTCAGTATGGATCAGAGAGTGAAGAGGACGCTGCTTTAGCTGCTGCACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CCA 90 bp TCCCAAAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTaGAGTCCCTACCATGGGGGCTACTCCTTGATTCATCACACCTTC +
Preference number: 5 (lower is better)
Translates to: SQNSYLLSIRTSTWC*SPYHGGYSLIHHTF
Trigger: GAAGGTGTGATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
CDS-3UTR CAA 90 bp TTGCTGAGCACTATGGTACCTGCCCTTAATCCCAGCACTTGGGAGGAAGAGGCAAGCTATGAGCTGCCCTaGGTGATTCCTACAGCTCCT +
Preference number: 5 (lower is better)
Translates to: LLSTMVPALNPSTWEEEASYELP*VIPTAP
Trigger: AGGAGCTGTAGGAATCACCAAGGGCAGCTCATAGCT...TGCCTCTTCCTCCCAAGTGCTGGGATTAAGGGCAGGTACCATAGTGCTCAGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCATGGGGGCTACTCCTaGATTCATCACACCCGGTGG +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCHGGYS*IHHTRW
Trigger: CCACCGGGTGTGATGAATCAAGGAGTAGCCCCCATG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp CGGATGTTGAGAGTGTCTCGAAGCATTAAATCCCGTAGGCGCCAGAGGGCATCTGTAAGGGGAGGTTTATaGGGAGAGTTGGGATCCACA +
Preference number: 5 (lower is better)
Translates to: RMLRVSRSIKSRRRQRASVRGGL*GELGST
Trigger: TGTGGATCCCAACTCTCCCAATAAACCTCCCCTTAC...AGATGCCCTCTGGCGCCTACGGGATTTAATGCTTCGAGACACTCTCAACATCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp AAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTGGAGTCCCTACCAGTAAGGGGAGGTTTATaGGGAGAGTTGGGATCCACA +
Preference number: 5 (lower is better)
Translates to: KLLPVVHTDFHLVLESLPVRGGL*GELGST
Trigger: TGTGGATCCCAACTCTCCCAATAAACCTCCCCTTAC...TGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp TTGCTGAGCACTATGGTACCTGCCCTTAATCCCAGCACTTGGGAGGAAGAGGCACAAAACTCCTACCTGTaGTCCATACGGACTTCCACC +
Preference number: 5 (lower is better)
Translates to: LLSTMVPALNPSTWEEEAQNSYL*SIRTST
Trigger: GGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTG...TGCCTCTTCCTCCCAAGTGCTGGGATTAAGGGCAGGTACCATAGTGCTCAGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGAAGCCTTTGGGTCTTaGGTGGGGGAGCCACAAACA +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCEAFGS*VGEPQT
Trigger: TGTTTGTGGCTCCCCCACCAAAGACCCAAAGGCTTC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp TCAGGGCTTGCCTTAGGGACACAGCCCCCTGTGCTGGATTTTTACTGCCTCGGGAAAGTTTGGTCCCACTaGCTAATGCTGTTGGATTCA +
Preference number: 5 (lower is better)
Translates to: SGLALGTQPPVLDFYCLGKVWSH*LMLLDS
Trigger: TGAATCCAACAGCATTAGCAAGTGGGACCAAACTTT...CCCGAGGCAGTAAAAATCCAGCACAGGGGGCTGTGTCCCTAAGGCAAGCCCTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CAA 90 bp CTGCATGCTGCCCATGCTAACAAGGCCATCAACTGGGCCCTGCAAAGGTGGAAGATCGGTTCATCCTTCTaGCCCGTTCCAATACTTCAA +
Preference number: 5 (lower is better)
Translates to: LHAAHANKAINWALQRWKIGSSF*PVPILQ
Trigger: TTGAAGTATTGGAACGGGCAAGAAGGATGAACCGAT...CTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGCATGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136237.8
CDS CCA 90 bp TACAGTTGGAAGATTGGACAGTCTTCTCCTTTTCCTGCTTGGGCCTaGTGTAGGCACAGAATGGTGCCCGTCATCAAAGTCTCCACTGAC +
Preference number: 5 (lower is better)
Translates to: YSWKIGQSSPFPAWA*CRHRMVPVIKVSTD
Trigger: GTCAGTGGAGACTTTGATGACGGGCACCATTCTGTGCCTACACCAGGCCCAAGCAGGAAAAGGAGAAGACTGTCCAATCTTCCAACTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 14 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000112106.8
ENSMUST00000123678.8
ENSMUST00000136237.8
ENSMUST00000144009.2
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CCA 90 bp AGGATCTACAGTTGGAAGATTGGACAGTCTTCTCCTTTTCCTGCTTaGGCCTGGTGTAGGCACAGAATGGTGCCCGTCATCAAAGTCTCC +
Preference number: 5 (lower is better)
Translates to: RIYSWKIGQSSPFPA*AWCRHRMVPVIKVS
Trigger: GGAGACTTTGATGACGGGCACCATTCTGTGCCTACACCAGGCCCAAGCAGGAAAAGGAGAAGACTGTCCAATCTTCCAACTGTAGATCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 14 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000112106.8
ENSMUST00000123678.8
ENSMUST00000136237.8
ENSMUST00000144009.2
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CCA 90 bp CCTGTTGTCCATACGGACTTCCACCTGGTGCTGGAGTCCCTACCATaGGGGCTACTCCTTGATTCATCACACCTTCATATTCTGCTTTCT +
Preference number: 5 (lower is better)
Translates to: PVVHTDFHLVLESLP*GLLLDSSHLHILLS
Trigger: AGAAAGCAGAATATGAAGGTGTGATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATGGACAACAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGTCAGCCAGTGTGCCTaGATTGTCTTGCCCATCTTC +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCVSQCA*IVLPIF
Trigger: GAAGATGGGCAAGACAATCAAGGCACACTGGCTGAC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp TCTGCATTTGCAAACACAGAGGCCACTCGGACCACAGGCAAAGGCACATCCCGATGGCTGCAGCCAAATTaGATGCAGTCCTTATTCGAA +
Preference number: 5 (lower is better)
Translates to: SAFANTEATRTTGKGTSRWLQPN*MQSLFE
Trigger: TTCGAATAAGGACTGCATCAAATTTGGCTGCAGCCA...TCGGGATGTGCCTTTGCCTGTGGTCCGAGTGGCCTCTGTGTTTGCAAATGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp CCTGGAGGTCCCAAAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTTGGCTGCAGCCAAATTaGATGCAGTCCTTATTCGAA +
Preference number: 5 (lower is better)
Translates to: PGGPKTPTCCPYGLPPGAWLQPN*MQSLFE
Trigger: TTCGAATAAGGACTGCATCAAATTTGGCTGCAGCCA...AGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTGGGACCTCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp GAGCTCCCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATTTCAGCTATGAGCTGCCCTaGGTGATTCCTACAGCTCCT +
Preference number: 5 (lower is better)
Translates to: ELPKRVVWVLGFNHSSHFSYELP*VIPTAP
Trigger: AGGAGCTGTAGGAATCACCAAGGGCAGCTCATAGCT...GAAATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGGGAGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp TCAGGGCTTGCCTTAGGGACACAGCCCCCTGTGCTGGATTTTTACTGCCTCGGGTCAGTTTCTGCTGCATaGGAGTCATGTACTTTGATT +
Preference number: 5 (lower is better)
Translates to: SGLALGTQPPVLDFYCLGSVSAA*ESCTLI
Trigger: AATCAAAGTACATGACTCCAATGCAGCAGAAACTGA...CCCGAGGCAGTAAAAATCCAGCACAGGGGGCTGTGTCCCTAAGGCAAGCCCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CAA 90 bp TCAGGGCTTGCCTTAGGGACACAGCCCCCTGTGCTGGATTTTTACTGCCTCGGGAGGATCTCTCCATTTTaGCAGAGTTCATCACGAATT +
Preference number: 5 (lower is better)
Translates to: SGLALGTQPPVLDFYCLGRISPF*QSSSRI
Trigger: AATTCGTGATGAACTCTGCAAAAATGGAGAGATCCT...CCCGAGGCAGTAAAAATCCAGCACAGGGGGCTGTGTCCCTAAGGCAAGCCCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCGGCTCTCCTGTTCTTaGGACAAATGGACATCCCGT +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCRLSCS*DKWTSR
Trigger: ACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS GCA 90 bp TTTTCCTTTTGGCACTACCAGTGTCAGAAGTGGCTGAGGAGATCATaGTGTCTCCGTCCTCAATGTCATCTCTCCTCGCAAGCTCCTTCT +
Preference number: 5 (lower is better)
Translates to: FSFWHYQCQKWLRRS*CLRPQCHLSSQAPS
Trigger: AGAAGGAGCTTGCGAGGAGAGATGACATTGAGGACGGAGACAGCATGATCTCCTCAGCCACTTCTGACACTGGTAGTGCCAAAAGGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS-3UTR CAA 90 bp TCAGGGCTTGCCTTAGGGACACAGCCCCCTGTGCTGGATTTTTACTGCCTCGGGAGAAGATCTATATCTTaGGCCATTGCGTGTATACTT +
Preference number: 5 (lower is better)
Translates to: SGLALGTQPPVLDFYCLGRRSIS*AIACIL
Trigger: AAGTATACACGCAATGGCCAAAGATATAGATCTTCT...CCCGAGGCAGTAAAAATCCAGCACAGGGGGCTGTGTCCCTAAGGCAAGCCCTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CAA 90 bp CCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATTTCACTGCTCCAAGGCTGCTTTTATaGTGCGAAGGACCTGTCAGC +
Preference number: 5 (lower is better)
Translates to: PKRVVWVLGFNHSSHFTAPRLLL*CEGPVS
Trigger: GCTGACAGGTCCTTCGCACAATAAAAGCAGCCTTGG...AGCAGTGAAATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGTAAGGGGAGGTTTATaGGGAGAGTTGGGATCCACA +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCVRGGL*GELGST
Trigger: TGTGGATCCCAACTCTCCCAATAAACCTCCCCTTAC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCCCCTTTATCTGCATTaGCAAACACAGAGGCCACTC +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCPLYLH*QTQRPL
Trigger: GAGTGGCCTCTGTGTTTGCAAATGCAGATAAAGGGG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTTCTTTGCACTGCCTTaGGCAGACTTTGGGGTAGAC +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCFFALP*ADFGVD
Trigger: GTCTACCCCAAAGTCTGCCAAAGGCAGTGCAAAGAA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCAAAACTCCTACCTGTaGTCCATACGGACTTCCACC +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCQNSYL*SIRTST
Trigger: GGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCCGGCTCTCCTGTTCTTaGGACAAATGGACATCCCGT +
Preference number: 5 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTRLSCS*DKWTSR
Trigger: ACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCG...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTAGCACTCGGCTGCTGTaGCTGTGCTGCTCGCTCTCT +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLSTRLL*LCCSLS
Trigger: AGAGAGCGAGCAGCACAGCAACAGCAGCCGAGTGCT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS TCA 90 bp ATGAGTATTCCTTTTCCTTTTGGCACTACCAGTGTCAGAAGTGGCTaGGGAGATCATGCTGTCTCCGTCCTCAATGTCATCTCTCCTCGC +
Preference number: 5 (lower is better)
Translates to: MSIPFPFGTTSVRSG*GDHAVSVLNVISPR
Trigger: GCGAGGAGAGATGACATTGAGGACGGAGACAGCATGATCTCCTCAGCCACTTCTGACACTGGTAGTGCCAAAAGGAAAAGGAATACTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022474.14
ENSMUST00000112092.8
ENSMUST00000112098.11
ENSMUST00000135704.2
CDS GCA 90 bp TACTTGCTAGTGGGGTTTCTTTCTTCACCAAGGCTGCTTTTATTGTaGGAAGGACCTGTCAGCCTGGCTGCAGCCAAATTTGATGCAGTC +
Preference number: 5 (lower is better)
Translates to: YLLVGFLSSPRLLLL*EGPVSLAAAKFDAV
Trigger: GACTGCATCAAATTTGGCTGCAGCCAGGCTGACAGGTCCTTCGCACAATAAAAGCAGCCTTGGTGAAGAAAGAAACCCCACTAGCAAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 11 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000156628.8
CDS-3UTR CAA 90 bp GCAAAGGTGGAAGGCCTGGCGGATAGCCACCCATCATGCCTTCATATTCTGCTTTCTACAGTTGGAAGATaGGACAGTCTTCTCCTTTTC +
Preference number: 5 (lower is better)
Translates to: AKVEGLADSHPSCLHILLSTVGR*DSLLLF
Trigger: GAAAAGGAGAAGACTGTCCAATCTTCCAACTGTAGA...AAGCAGAATATGAAGGCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp GCCGATAAAACCAACAGCCGTACAACCATTTTTCACCAGCTGAATCCTCCCACAGCCGTCCTGATGGATTaGTGGCTACAACTATGGCTT +
Preference number: 5 (lower is better)
Translates to: ADKTNSRTTIFHQLNPPTAVLMD*WLQLWL
Trigger: AAGCCATAGTTGTAGCCACAAATCCATCAGGACGGC...TGTGGGAGGATTCAGCTGGTGAAAAATGGTTGTACGGCTGTTGGTTTTATCGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp GGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCAAAGTCAGTTTCTGCTGCATaGGAGTCATGTACTTTGATT +
Preference number: 5 (lower is better)
Translates to: GGSPVLWTNGHPVFELPKSVSAA*ESCTLI
Trigger: AATCAAAGTACATGACTCCAATGCAGCAGAAACTGA...CTTTGGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCGTAAGGGGAGGTTTATaGGGAGAGTTGGGATCCACA +
Preference number: 5 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTVRGGL*GELGST
Trigger: TGTGGATCCCAACTCTCCCAATAAACCTCCCCTTAC...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCATATGTGGTTGTAGATaGGCCTCCGCAGGTTCAACA +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCICGCR*ASAGST
Trigger: TGTTGAACCTGCGGAGGCCAATCTACAACCACATAT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTTCAGCCACATGTCATaGTACCGAAGCTGCTCAAAG +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCFSHMS*YRSCSK
Trigger: CTTTGAGCAGCTTCGGTACAATGACATGTGGCTGAA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTTTCTGGTATTTCAGTaGGCCTGCAGGAGAGGAAGT +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCFLVFQ*ACRRGS
Trigger: ACTTCCTCTCCTGCAGGCCAACTGAAATACCAGAAA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCATGGGGGCTACTCCTaGATTCATCACACCTTCATA +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCHGGYS*IHHTFI
Trigger: TATGAAGGTGTGATGAATCAAGGAGTAGCCCCCATG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022471.12
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCATGGGGGCTACTCCTaGATTCATCACACCCGGTGG +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLHGGYS*IHHTRW
Trigger: CCACCGGGTGTGATGAATCAAGGAGTAGCCCCCATG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS TCA 90 bp GGAGTCGCTGTAACACCTCCCTTCGTCATCCTGATGACTCATGACTaGCACAAAAAGGTTATGGATGAGCTCTTGAATCAGCAACGTCAC +
Preference number: 5 (lower is better)
Translates to: GVAVTPPFVILMTHD*HKKVMDELLNQQRH
Trigger: GTGACGTTGCTGATTCAAGAGCTCATCCATAACCTTTTTGTGTCAGTCATGAGTCATCAGGATGACGAAGGGAGGTGTTACAGCGACTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CCA 90 bp TGTCATGAGTATTCCTTTTCCTTTTGGCACTACCAGTGTCAGAAGTaGCTGAGGAGATCATGCTGTCTCCGTCCTCAATGTCATCTCTCC +
Preference number: 5 (lower is better)
Translates to: CHEYSFSFWHYQCQK*LRRSCCLRPQCHLS
Trigger: GGAGAGATGACATTGAGGACGGAGACAGCATGATCTCCTCAGCCACTTCTGACACTGGTAGTGCCAAAAGGAAAAGGAATACTCATGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022474.14
ENSMUST00000112092.8
ENSMUST00000112098.11
ENSMUST00000135704.2
CDS-3UTR CAA 90 bp CGGATGTTGAGAGTGTCTCGAAGCATTAAATCCCGTAGGCGCCAGAGGGCATCTGAACAAACTCATTTCTaGTTCGAAGGTACAAATCCC +
Preference number: 5 (lower is better)
Translates to: RMLRVSRSIKSRRRQRASEQTHF*FEGTNP
Trigger: GGGATTTGTACCTTCGAACAAGAAATGAGTTTGTTC...AGATGCCCTCTGGCGCCTACGGGATTTAATGCTTCGAGACACTCTCAACATCCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp GGCGGCTCTCCTGTTCTTTGGACAAATGGACATCCCGTCTTCGAGCTGCCAAAGATAATAGTCTGGATATaGCACTTTGGAAGGCAGTTT +
Preference number: 5 (lower is better)
Translates to: GGSPVLWTNGHPVFELPKIIVWI*HFGRQF
Trigger: AAACTGCCTTCCAAAGTGCAATATCCAGACTATTAT...CTTTGGCAGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp ACAGAGGCCACTCGGACCACAGGCAAAGGCACATCCCGAGGGACAAATCTAACTAGAAGATCTATATCTTaGGCCATTGCGTGTATACTT +
Preference number: 5 (lower is better)
Translates to: TEATRTTGKGTSRGTNLTRRSIS*AIACIL
Trigger: AAGTATACACGCAATGGCCAAAGATATAGATCTTCT...AGTTAGATTTGTCCCTCGGGATGTGCCTTTGCCTGTGGTCCGAGTGGCCTCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp AAACTCCTACCTGTTGTCCATACGGACTTCCACCTGGTGCTGGAGTCCCTACCACTACTCAATTTAAGTTaGGGAGAAGCCATGTCATCA +
Preference number: 5 (lower is better)
Translates to: KLLPVVHTDFHLVLESLPLLNLS*GEAMSS
Trigger: TGATGACATGGCTTCTCCCAAACTTAAATTGAGTAG...TGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATGGACAACAGGTAGGAGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCTTTCTGGTATTTCAGTaGGCCTGCAGGAGAGGAAGT +
Preference number: 5 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTFLVFQ*ACRRGS
Trigger: ACTTCCTCTCCTGCAGGCCAACTGAAATACCAGAAA...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTGAAGCCTTTGGGTCTTaGGTGGGGGAGCCACAAACA +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLEAFGS*VGEPQT
Trigger: TGTTTGTGGCTCCCCCACCAAAGACCCAAAGGCTTC...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGCATCCCCATTGGTGTaGGTGGTGGCACCACCCCCA +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFASPLV*VVAPPP
Trigger: TGGGGGTGGTGCCACCACCAACACCAATGGGGATGC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGCATCCCCATTGGTGTaGGTGGTGGCACCACCCCCA +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSASPLV*VVAPPP
Trigger: TGGGGGTGGTGCCACCACCAACACCAATGGGGATGC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS TCA 90 bp CACTTTGGAAGGCAGTTTCTGAAAAAGTTCACTGATGAGCCGTCCTaGTGGATTTGTGGCTACAACTATGGCTTCAAGAAGCTGCTCCAG +
Preference number: 5 (lower is better)
Translates to: HFGRQFLKKFTDEPS*WICGYNYGFKKLLQ
Trigger: CTGGAGCAGCTTCTTGAAGCCATAGTTGTAGCCACAAATCCATCAGGACGGCTCATCAGTGAACTTTTTCAGAAACTGCCTTCCAAAGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTCTACAGTTGGAAGATaGGACAGTCTTCTCCTTTTC +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCSTVGR*DSLLLF
Trigger: GAAAAGGAGAAGACTGTCCAATCTTCCAACTGTAGA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp TTTTCACCAGCTGAATCCTCCCACAGTCTCTCAATACACACTATATGTGGTTGTGTCAGCCAGTGTGCCTaGATTGTCTTGCCCATCTTC +
Preference number: 5 (lower is better)
Translates to: FSPAESSHSLSIHTICGCVSQCA*IVLPIF
Trigger: GAAGATGGGCAAGACAATCAAGGCACACTGGCTGAC...ACAACCACATATAGTGTGTATTGAGAGACTGTGGGAGGATTCAGCTGGTGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTAGCTATGAGCTGCCCTaGGTGATTCCTACAGCTCCT +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLSYELP*VIPTAP
Trigger: AGGAGCTGTAGGAATCACCAAGGGCAGCTCATAGCT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCAACCTCTTCAAACCCTaGAACTTCTTCATCTGCTTG +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCNLFKP*NFFICL
Trigger: CAAGCAGATGAAGAAGTTCAAGGGTTTGAAGAGGTT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCAAAGTTTGGTCCCACTaGCTAATGCTGTTGGATTCA +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCKVWSH*LMLLDS
Trigger: TGAATCCAACAGCATTAGCAAGTGGGACCAAACTTT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCGTATTCCTTTTCCTTTaGGCACTACCAGTGTCAGAA +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCVFLFL*ALPVSE
Trigger: TTCTGACACTGGTAGTGCCAAAAGGAAAAGGAATAC...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTCAGTTTCTGCTGCATaGGAGTCATGTACTTTGATT +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCSVSAA*ESCTLI
Trigger: AATCAAAGTACATGACTCCAATGCAGCAGAAACTGA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTGTAAGGGGAGGTTTATaGGGAGAGTTGGGATCCACA +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLVRGGL*GELGST
Trigger: TGTGGATCCCAACTCTCCCAATAAACCTCCCCTTAC...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCAGGATCTCTCCATTTTaGCAGAGTTCATCACGAATT +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCRISPF*QSSSRI
Trigger: AATTCGTGATGAACTCTGCAAAAATGGAGAGATCCT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCCCCTTTATCTGCATTaGCAAACACAGAGGCCACTC +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLPLYLH*QTQRPL
Trigger: GAGTGGCCTCTGTGTTTGCAAATGCAGATAAAGGGG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTTGTCTTCAGCTCTATaGTCATCTGAGTTGTCTGTA +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCLSSAL*SSELSV
Trigger: TACAGACAACTCAGATGACAATAGAGCTGAAGACAA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GTCCCTTACCCACTCAGTTCTTCCTTAGAAGGGGAAGGCAGACTTAGTAAAACCAACCTCTTCAAACCCTaGAACTTCTTCATCTGCTTG +
Preference number: 5 (lower is better)
Translates to: VPYPLSSSLEGEGRLSKTNLFKP*NFFICL
Trigger: CAAGCAGATGAAGAAGTTCAAGGGTTTGAAGAGGTT...GGTTTTACTAAGTCTGCCTTCCCCTTCTAAGGAAGAACTGAGTGGGTAAGGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112095.8
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTTCTTTGCACTGCCTTaGGCAGACTTTGGGGTAGAC +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLFFALP*ADFGVD
Trigger: GTCTACCCCAAAGTCTGCCAAAGGCAGTGCAAAGAA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCTCATATTCTGCTTTCTaGGCTGTTTCAAGGTTTCTC +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCSYSAF*AVSRFL
Trigger: GAGAAACCTTGAAACAGCCAAGAAAGCAGAATATGA...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCAAAACTCCTACCTGTaGTCCATACGGACTTCCACC +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLQNSYL*SIRTST
Trigger: GGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp CAAATGGAATGTTTCATTTGGCCGATAAAACCAACAGCCGTACAACCATTTTTCGTCAGCCAGTGTGCCTaGATTGTCTTGCCCATCTTC +
Preference number: 5 (lower is better)
Translates to: QMECFIWPIKPTAVQPFFVSQCA*IVLPIF
Trigger: GAAGATGGGCAAGACAATCAAGGCACACTGGCTGAC...GAAAAATGGTTGTACGGCTGTTGGTTTTATCGGCCAAATGAAACATTCCATTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCATAATAGTCTGGATATaGCACTTTGGAAGGCAGTTT +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCIIVWI*HFGRQF
Trigger: AAACTGCCTTCCAAAGTGCAATATCCAGACTATTAT...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GAGCTCCCCAAAAGAGTAGTCTGGGTGCTGGGCTTTAATCACAGCTCTCATTTCATAATAGTCTGGATATaGCACTTTGGAAGGCAGTTT +
Preference number: 5 (lower is better)
Translates to: ELPKRVVWVLGFNHSSHFIIVWI*HFGRQF
Trigger: AAACTGCCTTCCAAAGTGCAATATCCAGACTATTAT...GAAATGAGAGCTGTGATTAAAGCCCAGCACCCAGACTACTCTTTTGGGGAGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp ATAAAGAATCCCGGCCATGTGTATGTAGGCAGTCTACCCTGCACAGCTATGTGCCTATTGTCATCTGAGTaGTCTGTATTCTTCTCATCA +
Preference number: 5 (lower is better)
Translates to: IKNPGHVYVGSLPCTAMCLLSSE*SVFFSS
Trigger: TGATGAGAAGAATACAGACAACTCAGATGACAATAG...GCACATAGCTGTGCAGGGTAGACTGCCTACATACACATGGCCGGGATTCTTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTTCAGCCACATGTCATaGTACCGAAGCTGCTCAAAG +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLFSHMS*YRSCSK
Trigger: CTTTGAGCAGCTTCGGTACAATGACATGTGGCTGAA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGAAGCCTTTGGGTCTTaGGTGGGGGAGCCACAAACA +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFEAFGS*VGEPQT
Trigger: TGTTTGTGGCTCCCCCACCAAAGACCCAAAGGCTTC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGTCAGCCAGTGTGCCTaGATTGTCTTGCCCATCTTC +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSVSQCA*IVLPIF
Trigger: GAAGATGGGCAAGACAATCAAGGCACACTGGCTGAC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGTCAGCCAGTGTGCCTaGATTGTCTTGCCCATCTTC +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFVSQCA*IVLPIF
Trigger: GAAGATGGGCAAGACAATCAAGGCACACTGGCTGAC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTGGCTGCAGCCAAATTaGATGCAGTCCTTATTCGAA +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLWLQPN*MQSLFE
Trigger: TTCGAATAAGGACTGCATCAAATTTGGCTGCAGCCA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCCAAGGCTGCTTTTATaGTGCGAAGGACCTGTCAGC +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSPRLLL*CEGPVS
Trigger: GCTGACAGGTCCTTCGCACAATAAAAGCAGCCTTGG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCCAAGGCTGCTTTTATaGTGCGAAGGACCTGTCAGC +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFPRLLL*CEGPVS
Trigger: GCTGACAGGTCCTTCGCACAATAAAAGCAGCCTTGG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCAGCTATGAGCTGCCCTaGGTGATTCCTACAGCTCCT +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFSYELP*VIPTAP
Trigger: AGGAGCTGTAGGAATCACCAAGGGCAGCTCATAGCT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCGGCTCTCCTGTTCTTaGGACAAATGGACATCCCGT +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSRLSCS*DKWTSR
Trigger: ACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GTCACTCTCATTATAGCGGCTCTCACAAAGCAGAATGTCATTTTCTGGTATTTCAGCGGTTCATCCTTCTaGCCCGTTCCAATACTTCAA +
Preference number: 5 (lower is better)
Translates to: VTLIIAALTKQNVIFWYFSGSSF*PVPILQ
Trigger: TTGAAGTATTGGAACGGGCAAGAAGGATGAACCGCT...GAAATACCAGAAAATGACATTCTGCTTTGTGAGAGCCGCTATAATGAGAGTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123678.8
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTCTACAGTTGGAAGATaGGACAGTCTTCTCCTTTTC +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLSTVGR*DSLLLF
Trigger: GAAAAGGAGAAGACTGTCCAATCTTCCAACTGTAGA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp CATCTGCTTGTCACTCTCATTATAGCGGCTCTCACAAAGCAGAATGTCATTTTCTCTACAGTTGGAAGATaGGACAGTCTTCTCCTTTTC +
Preference number: 5 (lower is better)
Translates to: HLLVTLIIAALTKQNVIFSTVGR*DSLLLF
Trigger: GAAAAGGAGAAGACTGTCCAATCTTCCAACTGTAGA...GAAAATGACATTCTGCTTTGTGAGAGCCGCTATAATGAGAGTGACAAGCAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTTCATAATAGTCTGGTaGATTTCTCCGCTTTGGAGC +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLFIIVW*ISPLWS
Trigger: GCTCCAAAGCGGAGAAATCAACCAGACTATTATGAA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp TTTTCACCAGCTGAATCCTCCCACAGTCTCTCAATACACACTATATGTGGTTGTTTCATAATAGTCTGGTaGATTTCTCCGCTTTGGAGC +
Preference number: 5 (lower is better)
Translates to: FSPAESSHSLSIHTICGCFIIVW*ISPLWS
Trigger: GCTCCAAAGCGGAGAAATCAACCAGACTATTATGAA...ACAACCACATATAGTGTGTATTGAGAGACTGTGGGAGGATTCAGCTGGTGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGCCGTCCTGATGGATTaGTGGCTACAACTATGGCTT +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFAVLMD*WLQLWL
Trigger: AAGCCATAGTTGTAGCCACAAATCCATCAGGACGGC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGCCGTCCTGATGGATTaGTGGCTACAACTATGGCTT +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSAVLMD*WLQLWL
Trigger: AAGCCATAGTTGTAGCCACAAATCCATCAGGACGGC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCTGAACAAAATGTAGCCACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTCCAAGGCTGCTTTTATaGTGCGAAGGACCTGTCAGC +
Preference number: 5 (lower is better)
Translates to: AEQNVATHVDFSFRTFLLPRLLL*CEGPVS
Trigger: GCTGACAGGTCCTTCGCACAATAAAAGCAGCCTTGG...AAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGTGGCTACATTTTGTTCAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp GTCTGTATTCTTCTCATCATCCCCTTTATCTGCATTTGCAAACACAGAGGCCACTCAGTTTCTGCTGCATaGGAGTCATGTACTTTGATT +
Preference number: 5 (lower is better)
Translates to: VCILLIIPFICICKHRGHSVSAA*ESCTLI
Trigger: AATCAAAGTACATGACTCCAATGCAGCAGAAACTGA...GTGGCCTCTGTGTTTGCAAATGCAGATAAAGGGGATGATGAGAAGAATACAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTGTCTTGGTACTTGTTaGCCATCATGTGACTTCGAA +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLCLGTC*PSCDFE
Trigger: TTCGAAGTCACATGATGGCAAACAAGTACCAAGACA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp CACATCGTTATGCAAGTGTTTTGTGGTATAGCTGAGTGCTGGAGAAAGAAGGATTGTCTTGGTACTTGTTaGCCATCATGTGACTTCGAA +
Preference number: 5 (lower is better)
Translates to: HIVMQVFCGIAECWRKKDCLGTC*PSCDFE
Trigger: TTCGAAGTCACATGATGGCAAACAAGTACCAAGACA...ATCCTTCTTTCTCCAGCACTCAGCTATACCACAAAACACTTGCATAACGATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGTAAGGGGAGGTTTATaGGGAGAGTTGGGATCCACA +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSVRGGL*GELGST
Trigger: TGTGGATCCCAACTCTCCCAATAAACCTCCCCTTAC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCCCCTTTATCTGCATTaGCAAACACAGAGGCCACTC +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFPLYLH*QTQRPL
Trigger: GAGTGGCCTCTGTGTTTGCAAATGCAGATAAAGGGG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTAACCTCTTCAAACCCTaGAACTTCTTCATCTGCTTG +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLNLFKP*NFFICL
Trigger: CAAGCAGATGAAGAAGTTCAAGGGTTTGAAGAGGTT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTTCTTTGCACTGCCTTaGGCAGACTTTGGGGTAGAC +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSFFALP*ADFGVD
Trigger: GTCTACCCCAAAGTCTGCCAAAGGCAGTGCAAAGAA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTTCTTTGCACTGCCTTaGGCAGACTTTGGGGTAGAC +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFFFALP*ADFGVD
Trigger: GTCTACCCCAAAGTCTGCCAAAGGCAGTGCAAAGAA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCAAAACTCCTACCTGTaGTCCATACGGACTTCCACC +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSQNSYL*SIRTST
Trigger: GGTGGAAGTCCGTATGGACAACAGGTAGGAGTTTTG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS GCA 90 bp AATGTAGCCACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTTaGACTGCCTTTGGCAGACTTTGGGGTAGATTCACTATCCTCTTC +
Preference number: 5 (lower is better)
Translates to: NVATHVDFSFRTFLL*TAFGRLWGRFTILF
Trigger: GAAGAGGATAGTGAATCTACCCCAAAGTCTGCCAAAGGCAGTGCAAAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGTGGCTACATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052239.12
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTGAACAAACTCATTTCTaGTTCGAAGGTACAAATCCC +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLEQTHF*FEGTNP
Trigger: GGGATTTGTACCTTCGAACAAGAAATGAGTTTGTTC...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp CAAAATGTAGCCACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTTGCACTGCCGTCCTGATGGATTaGTGGCTACAACTATGGCTT +
Preference number: 5 (lower is better)
Translates to: QNVATHVDFSFRTFLLCTAVLMD*WLQLWL
Trigger: AAGCCATAGTTGTAGCCACAAATCCATCAGGACGGC...AGTGCAAAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGTGGCTACATTTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTCTTCACCTGCATATTaGTCATTTCGGATGTTATGC +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLSSPAY*SFRMLC
Trigger: GCATAACATCCGAAATGACAAATATGCAGGTGAAGA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp CATCTGCTTGTCACTCTCATTATAGCGGCTCTCACAAAGCAGAATGTCATTTTCTCTTCACCTGCATATTaGTCATTTCGGATGTTATGC +
Preference number: 5 (lower is better)
Translates to: HLLVTLIIAALTKQNVIFSSPAY*SFRMLC
Trigger: GCATAACATCCGAAATGACAAATATGCAGGTGAAGA...GAAAATGACATTCTGCTTTGTGAGAGCCGCTATAATGAGAGTGACAAGCAGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCTACTCAATTTAAGTTaGGGAGAAGCCATGTCATCA +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLLLNLS*GEAMSS
Trigger: TGATGACATGGCTTCTCCCAAACTTAAATTGAGTAG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTCAGTTTCTGCTGCATaGGAGTCATGTACTTTGATT +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLSVSAA*ESCTLI
Trigger: AATCAAAGTACATGACTCCAATGCAGCAGAAACTGA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTCCGGTTCATCCTTCTaGCCCGTTCCAATACTTCAA +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSSGSSF*PVPILQ
Trigger: TTGAAGTATTGGAACGGGCAAGAAGGATGAACCGGA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTCCGGTTCATCCTTCTaGCCCGTTCCAATACTTCAA +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFSGSSF*PVPILQ
Trigger: TTGAAGTATTGGAACGGGCAAGAAGGATGAACCGGA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCATATGTGGTTGTAGATaGGCCTCCGCAGGTTCAACA +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFICGCR*ASAGST
Trigger: TGTTGAACCTGCGGAGGCCAATCTACAACCACATAT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTATATGTGGTTGTAGATaGGCCTCCGCAGGTTCAACA +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSICGCR*ASAGST
Trigger: TGTTGAACCTGCGGAGGCCAATCTACAACCACATAT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTAATGGAATGTTTCATTaGGCCGATAAAACCAACAGC +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLNGMFH*ADKTNS
Trigger: GCTGTTGGTTTTATCGGCCAAATGAAACATTCCATT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTTTGTCTTCAGCTCTATaGTCATCTGAGTTGTCTGTA +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLLSSAL*SSELSV
Trigger: TACAGACAACTCAGATGACAATAGAGCTGAAGACAA...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTTCAGCCACATGTCATaGTACCGAAGCTGCTCAAAG +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSFSHMS*YRSCSK
Trigger: CTTTGAGCAGCTTCGGTACAATGACATGTGGCTGAA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTTTCTGGTATTTCAGTaGGCCTGCAGGAGAGGAAGT +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFFLVFQ*ACRRGS
Trigger: ACTTCCTCTCCTGCAGGCCAACTGAAATACCAGAAA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp TCATCTACAACTTTAGCAGAGAGTGAAAACCTCTTCAAACCCTTGAACTTCTTCTTCATAATAGTCTGGTaGATTTCTCCGCTTTGGAGC +
Preference number: 5 (lower is better)
Translates to: SSTTLAESENLFKPLNFFFIIVW*ISPLWS
Trigger: GCTCCAAAGCGGAGAAATCAACCAGACTATTATGAA...GAAGAAGTTCAAGGGTTTGAAGAGGTTTTCACTCTCTGCTAAAGTTGTAGATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp GTCACTCTCATTATAGCGGCTCTCACAAAGCAGAATGTCATTTTCTGGTATTTCGAACAAACTCATTTCTaGTTCGAAGGTACAAATCCC +
Preference number: 5 (lower is better)
Translates to: VTLIIAALTKQNVIFWYFEQTHF*FEGTNP
Trigger: GGGATTTGTACCTTCGAACAAGAAATGAGTTTGTTC...GAAATACCAGAAAATGACATTCTGCTTTGTGAGAGCCGCTATAATGAGAGTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTATAATAGTCTGGATATaGCACTTTGGAAGGCAGTTT +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLIIVWI*HFGRQF
Trigger: AAACTGCCTTCCAAAGTGCAATATCCAGACTATTAT...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTGGCTGCAGCCAAATTaGATGCAGTCCTTATTCGAA +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFWLQPN*MQSLFE
Trigger: TTCGAATAAGGACTGCATCAAATTTGGCTGCAGCCA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp ACATTTTCTAGGTTGTATGCCTGTCGGATGTTGAGAGTGTCTCGAAGCATTAAACTACTCAATTTAAGTTaGGGAGAAGCCATGTCATCA +
Preference number: 5 (lower is better)
Translates to: TFSRLYACRMLRVSRSIKLLNLS*GEAMSS
Trigger: TGATGACATGGCTTCTCCCAAACTTAAATTGAGTAG...TTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGAAAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp TGCAGGCACAGCTTGTGTCCACTTACACTCTTTCTTGGGTTAAGTATTATGCTTCTATTGTCATCTGAGTaGTCTGTATTCTTCTCATCA +
Preference number: 5 (lower is better)
Translates to: CRHSLCPLTLFLGLSIMLLLSSE*SVFFSS
Trigger: TGATGAGAAGAATACAGACAACTCAGATGACAATAG...AAGCATAATACTTAACCCAAGAAAGAGTGTAAGTGGACACAAGCTGTGCCTGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS CCA 90 bp GAGGACTTTATGCAGTACAAGGGCATCTTTGTAGATCAAAGACTCTaGTTCATTGTAGGTACAGGCATTATTAAACATCATGACAAAGTC +
Preference number: 5 (lower is better)
Translates to: EDFMQYKGIFVDQRL*FIVGTGIIKHHDKV
Trigger: GACTTTGTCATGATGTTTAATAATGCCTGTACCTACAATGAACCAGAGTCTTTGATCTACAAAGATGCCCTTGTACTGCATAAAGTCCTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTCTACAGTTGGAAGATaGGACAGTCTTCTCCTTTTC +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSSTVGR*DSLLLF
Trigger: GAAAAGGAGAAGACTGTCCAATCTTCCAACTGTAGA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTTCATAATAGTCTGGTaGATTTCTCCGCTTTGGAGC +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFFIIVW*ISPLWS
Trigger: GCTCCAAAGCGGAGAAATCAACCAGACTATTATGAA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTTCATAATAGTCTGGTaGATTTCTCCGCTTTGGAGC +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSFIIVW*ISPLWS
Trigger: GCTCCAAAGCGGAGAAATCAACCAGACTATTATGAA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp ACATTTTCTAGGTTGTATGCCTGTCGGATGTTGAGAGTGTCTCGAAGCATTAAAAGAAGATCTATATCTTaGGCCATTGCGTGTATACTT +
Preference number: 5 (lower is better)
Translates to: TFSRLYACRMLRVSRSIKRRSIS*AIACIL
Trigger: AAGTATACACGCAATGGCCAAAGATATAGATCTTCT...TTTAATGCTTCGAGACACTCTCAACATCCGACAGGCATACAACCTAGAAAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp TCATCTACAACTTTAGCAGAGAGTGAAAACCTCTTCAAACCCTTGAACTTCTTCTCTTCACCTGCATATTaGTCATTTCGGATGTTATGC +
Preference number: 5 (lower is better)
Translates to: SSTTLAESENLFKPLNFFSSPAY*SFRMLC
Trigger: GCATAACATCCGAAATGACAAATATGCAGGTGAAGA...GAAGAAGTTCAAGGGTTTGAAGAGGTTTTCACTCTCTGCTAAAGTTGTAGATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTGTCTTGGTACTTGTTaGCCATCATGTGACTTCGAA +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSCLGTC*PSCDFE
Trigger: TTCGAAGTCACATGATGGCAAACAAGTACCAAGACA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTAACCTCTTCAAACCCTaGAACTTCTTCATCTGCTTG +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSNLFKP*NFFICL
Trigger: CAAGCAGATGAAGAAGTTCAAGGGTTTGAAGAGGTT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCAAAGTTTGGTCCCACTaGCTAATGCTGTTGGATTCA +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFKVWSH*LMLLDS
Trigger: TGAATCCAACAGCATTAGCAAGTGGGACCAAACTTT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS GCA 90 bp ATTGCGGAACATGAGTTTCATGTCTTCCATCATTCCTTCTTCACCTaGATATTTGTCATTTCGGATGTTATGCTCAATTATTTTCAGGTC +
Preference number: 5 (lower is better)
Translates to: IAEHEFHVFHHSFFT*IFVISDVMLNYFQV
Trigger: GACCTGAAAATAATTGAGCATAACATCCGAAATGACAAATATGCAGGTGAAGAAGGAATGATGGAAGACATGAAACTCATGTTCCGCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCGAACAAACTCATTTCTaGTTCGAAGGTACAAATCCC +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFEQTHF*FEGTNP
Trigger: GGGATTTGTACCTTCGAACAAGAAATGAGTTTGTTC...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTGAACAAACTCATTTCTaGTTCGAAGGTACAAATCCC +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSEQTHF*FEGTNP
Trigger: GGGATTTGTACCTTCGAACAAGAAATGAGTTTGTTC...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTCTTCACCTGCATATTaGTCATTTCGGATGTTATGC +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFSSPAY*SFRMLC
Trigger: GCATAACATCCGAAATGACAAATATGCAGGTGAAGA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTCTTCACCTGCATATTaGTCATTTCGGATGTTATGC +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSSSPAY*SFRMLC
Trigger: GCATAACATCCGAAATGACAAATATGCAGGTGAAGA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTCTACTCAATTTAAGTTaGGGAGAAGCCATGTCATCA +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSLLNLS*GEAMSS
Trigger: TGATGACATGGCTTCTCCCAAACTTAAATTGAGTAG...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCTGAACAAAATGTAGCCACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTTGTCTTGGTACTTGTTaGCCATCATGTGACTTCGAA +
Preference number: 5 (lower is better)
Translates to: AEQNVATHVDFSFRTFLLCLGTC*PSCDFE
Trigger: TTCGAAGTCACATGATGGCAAACAAGTACCAAGACA...AAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGTGGCTACATTTTGTTCAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000123678.8
ENSMUST00000136237.8
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCAGGATCTCTCCATTTTaGCAGAGTTCATCACGAATT +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFRISPF*QSSSRI
Trigger: AATTCGTGATGAACTCTGCAAAAATGGAGAGATCCT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCAATGGAATGTTTCATTaGGCCGATAAAACCAACAGC +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFNGMFH*ADKTNS
Trigger: GCTGTTGGTTTTATCGGCCAAATGAAACATTCCATT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTTCATATTCTGCTTTCTaGGCTGTTTCAAGGTTTCTC +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSSYSAF*AVSRFL
Trigger: GAGAAACCTTGAAACAGCCAAGAAAGCAGAATATGA...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCTCATATTCTGCTTTCTaGGCTGTTTCAAGGTTTCTC +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFSYSAF*AVSRFL
Trigger: GAGAAACCTTGAAACAGCCAAGAAAGCAGAATATGA...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTATAATAGTCTGGATATaGCACTTTGGAAGGCAGTTT +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSIIVWI*HFGRQF
Trigger: AAACTGCCTTCCAAAGTGCAATATCCAGACTATTAT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCACATATTCTACAAGAATCACTGACAATACAGATGTCTAACTCAGCACAAAGTAGAAGATCTATATCTTaGGCCATTGCGTGTATACTT +
Preference number: 5 (lower is better)
Translates to: AHILQESLTIQMSNSAQSRRSIS*AIACIL
Trigger: AAGTATACACGCAATGGCCAAAGATATAGATCTTCT...ACTTTGTGCTGAGTTAGACATCTGTATTGTCAGTGATTCTTGTAGAATATGTGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCAGAAGATCTATATCTTaGGCCATTGCGTGTATACTT +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFRRSIS*AIACIL
Trigger: AAGTATACACGCAATGGCCAAAGATATAGATCTTCT...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS-3UTR CAA 90 bp GCAAATATGCCGCATCTGTCACACATGTATAATCTAAACTTTTCAAAGCACTTCCTATTGTCATCTGAGTaGTCTGTATTCTTCTCATCA +
Preference number: 5 (lower is better)
Translates to: ANMPHLSHMYNLNFSKHFLLSSE*SVFFSS
Trigger: TGATGAGAAGAATACAGACAACTCAGATGACAATAG...GAAGTGCTTTGAAAAGTTTAGATTATACATGTGTGACAGATGCGGCATATTTGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022471.12
ENSMUST00000090214.11
ENSMUST00000112095.8
ENSMUST00000112098.11
CDS GCA 72 bp TGCTCGGGGAGAAGCACTCGGCTGCTGTTGCTGTGCTaGTCGCTCTCTCTCCTGCTGCTCAGCAACTTTAGC +
Preference number: 6 (lower is better)
Translates to: CSGRSTRLLLLC*SLSLLLLSNFS
Trigger: GCTAAAGTTGCTGAGCAGCAGGAGAGAGAGCGAGCAGCACAGCAACAGCAGCCGAGTGCTTCTCCCCGAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112098.11
CDS CCA 72 bp AAGGCCATCAACTGGGCCCTGCAAAGGTGGAAGGCCTaGCGGATAGCCACCCATCATGCCTGCAACAGGTGT +
Preference number: 6 (lower is better)
Translates to: KAINWALQRWKA*RIATHHACNRC
Trigger: ACACCTGTTGCAGGCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS TCA 72 bp CACCCATCATGCCTGCAACAGGTGTCAACTGCTGATTaGGCATCCCCATTGGTGTTGGTGGTGGCACCACCC +
Preference number: 6 (lower is better)
Translates to: HPSCLQQVSTAD*ASPLVLVVAPP
Trigger: GGGTGGTGCCACCACCAACACCAATGGGGATGCTCAATCAGCAGTTGACACCTGTTGCAGGCATGATGGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090214.11
ENSMUST00000112098.11
CDS GCA 72 bp CTCGGCTGCTGTTGCTGTGCTGCTCGCTCTCTCTCCTaGTGCTCAGCAACTTTAGCTGCCCGCTCTTCATAT +
Preference number: 6 (lower is better)
Translates to: LGCCCCAARSLS*CSATLAARSSY
Trigger: ATATGAAGAGCGGGCAGCTAAAGTTGCTGAGCAGCAGGAGAGAGAGCGAGCAGCACAGCAACAGCAGCCGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112098.11
CDS CCA 72 bp CTCCTTTTCCTGCTTGGGCCTGGTGTAGGCACAGAATaGTGCCCGTCATCAAAGTCTCCACTGACACTGCTG +
Preference number: 6 (lower is better)
Translates to: LLFLLGPGVGTE*CPSSKSPLTLL
Trigger: CAGCAGTGTCAGTGGAGACTTTGATGACGGGCACCATTCTGTGCCTACACCAGGCCCAAGCAGGAAAAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 14 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000112106.8
ENSMUST00000123678.8
ENSMUST00000136237.8
ENSMUST00000144009.2
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CCA 72 bp CATACGGACTTCCACCTGGTGCTGGAGTCCCTACCATaGGGGCTACTCCTTGATTCATCACACCTGCAACAG +
Preference number: 6 (lower is better)
Translates to: HTDFHLVLESLP*GLLLDSSHLQQ
Trigger: CTGTTGCAGGTGTGATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112092.8
CDS CAA 72 bp ACCTGGTGCTGGAGTCCCTACCATGGGGGCTACTCCTaGATTCATCACACCTGCAACAGGTGTCAACTGCTG +
Preference number: 6 (lower is better)
Translates to: TWCWSPYHGGYS*IHHTCNRCQLL
Trigger: CAGCAGTTGACACCTGTTGCAGGTGTGATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112092.8
CDS TCA 72 bp GATTCATCACACCTGCAACAGGTGTCAACTGCTGATTaGGCATCCCCATTGGTGTTGGTGGTGGCACCACCC +
Preference number: 6 (lower is better)
Translates to: DSSHLQQVSTAD*ASPLVLVVAPP
Trigger: GGGTGGTGCCACCACCAACACCAATGGGGATGCTCAATCAGCAGTTGACACCTGTTGCAGGTGTGATGAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112092.8
CDS GCA 72 bp CTTTTCCTGCTTGGGCCTGGTGTAGGCACAGAATGGTaGCCGTCATCAAAGTCTCCACTGACACTGCTGGAA +
Preference number: 6 (lower is better)
Translates to: LFLLGPGVGTEW*PSSKSPLTLLE
Trigger: TTCCAGCAGTGTCAGTGGAGACTTTGATGACGGGCACCATTCTGTGCCTACACCAGGCCCAAGCAGGAAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 14 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000112106.8
ENSMUST00000123678.8
ENSMUST00000136237.8
ENSMUST00000144009.2
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS GCA 72 bp TGGCACTACCAGTGTCAGAAGTGGCTGAGGAGATCATaGTGTCTCCGTCCTCAATGTCATCTCTCCTCGCAA +
Preference number: 6 (lower is better)
Translates to: WHYQCQKWLRRS*CLRPQCHLSSQ
Trigger: TTGCGAGGAGAGATGACATTGAGGACGGAGACAGCATGATCTCCTCAGCCACTTCTGACACTGGTAGTGCCA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CAA 90 bp AAGTCTCCACTGACACTGCTGGAAGGAGAGGTGGCTCTTCTTCTCTaGGAACCCATGGAATCCAACTTCTTCAGAGCACAACCAGCGCCT +
Preference number: 6 (lower is better)
Translates to: KSPLTLLEGEVALLL*EPMESNFFRAQPAP
Trigger: AGGCGCTGGTTGTGCTCTGAAGAAGTTGGATTCCATGGGTTCCAAGAGAAGAAGAGCCACCTCTCCTTCCAGCAGTGTCAGTGGAGACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112106.8
CDS CCA 72 bp TTCAAGAAGCTGCTCCAGGATCTCCTTCAGATAACCTaGAGAAGAGCCGTCAGCCAGTGTGCCTTGATTGTC +
Preference number: 6 (lower is better)
Translates to: FKKLLQDLLQIT*RRAVSQCALIV
Trigger: GACAATCAAGGCACACTGGCTGACGGCTCTTCTCCAGGTTATCTGAAGGAGATCCTGGAGCAGCTTCTTGAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CCA 72 bp CATACGGACTTCCACCTGGTGCTGGAGTCCCTACCATaGGGGCTACTCCTTGATTCATCACACCTTCATATT +
Preference number: 6 (lower is better)
Translates to: HTDFHLVLESLP*GLLLDSSHLHI
Trigger: AATATGAAGGTGTGATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
CDS CAA 72 bp TGGAGAAGAGCCGTCAGCCAGTGTGCCTTGATTGTCTaGCCCATCTTCGTCATCATCTTCATCGTCTGCTTC +
Preference number: 6 (lower is better)
Translates to: WRRAVSQCALIV*PIFVIIFIVCF
Trigger: GAAGCAGACGATGAAGATGATGACGAAGATGGGCAAGACAATCAAGGCACACTGGCTGACGGCTCTTCTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CAA 72 bp ACCTGGTGCTGGAGTCCCTACCATGGGGGCTACTCCTaGATTCATCACACCTTCATATTCTGCTTTCTTGGC +
Preference number: 6 (lower is better)
Translates to: TWCWSPYHGGYS*IHHTFIFCFLG
Trigger: GCCAAGAAAGCAGAATATGAAGGTGTGATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
CDS TCA 72 bp CCTTTTCCTTTTGGCACTACCAGTGTCAGAAGTGGCTaGGGAGATCATGCTGTCTCCGTCCTCAATGTCATC +
Preference number: 6 (lower is better)
Translates to: PFPFGTTSVRSG*GDHAVSVLNVI
Trigger: GATGACATTGAGGACGGAGACAGCATGATCTCCTCAGCCACTTCTGACACTGGTAGTGCCAAAAGGAAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022474.14
ENSMUST00000112092.8
ENSMUST00000112098.11
ENSMUST00000135704.2
CDS CAA 72 bp CTGACACTGCTGGAAGGAGAGGTGGCTCTTCTTCTCTaGGAACCCATGGAATCCAACTTCTTCAGAGCACAA +
Preference number: 6 (lower is better)
Translates to: LTLLEGEVALLL*EPMESNFFRAQ
Trigger: TTGTGCTCTGAAGAAGTTGGATTCCATGGGTTCCAAGAGAAGAAGAGCCACCTCTCCTTCCAGCAGTGTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112106.8
CDS CAA 72 bp CTGACACTGCTGGAAGGAGAGGTGGCTCTTCTTCTCTaGGAACCCATGGAATCCAACTTCTTCAGCTTTACC +
Preference number: 6 (lower is better)
Translates to: LTLLEGEVALLL*EPMESNFFSFT
Trigger: GGTAAAGCTGAAGAAGTTGGATTCCATGGGTTCCAAGAGAAGAAGAGCCACCTCTCCTTCCAGCAGTGTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000144009.2
ENSMUST00000146325.8
CDS CAA 90 bp AAGTCTCCACTGACACTGCTGGAAGGAGAGGTGGCTCTTCTTCTCTaGGAACCCATGGAATCCAACTTCTTCAGCTTTACCAGAGCACAA +
Preference number: 6 (lower is better)
Translates to: KSPLTLLEGEVALLL*EPMESNFFSFTRAQ
Trigger: TTGTGCTCTGGTAAAGCTGAAGAAGTTGGATTCCATGGGTTCCAAGAGAAGAAGAGCCACCTCTCCTTCCAGCAGTGTCAGTGGAGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000144009.2
ENSMUST00000146325.8
CDS TCA 72 bp ACTTTTCCTTTTGGCACTACCAGTGTCAGAAGTGGCTaGGGAGATCATGCTGTCTCCGTCCTCAATGTCATC +
Preference number: 6 (lower is better)
Translates to: TFPFGTTSVRSG*GDHAVSVLNVI
Trigger: GATGACATTGAGGACGGAGACAGCATGATCTCCTCAGCCACTTCTGACACTGGTAGTGCCAAAAGGAAAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000022471.12
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000123678.8
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CCA 72 bp CAAGGCTGCTTTTATTGTGCGAAGGACCTGTCAGCCTaGCTGCAGCCAAATTTGATGCAGTCCTTATTCGAA +
Preference number: 6 (lower is better)
Translates to: QGCFYCAKDLSA*LQPNLMQSLFE
Trigger: TTCGAATAAGGACTGCATCAAATTTGGCTGCAGCCAGGCTGACAGGTCCTTCGCACAATAAAAGCAGCCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000156628.8
CDS CCA 72 bp AGAACTTTCCTTCTTTGCACTGCCTTTGGCAGACTTTaGGGTAGATTCACTATCCTCTTCTCCCATCTCCTC +
Preference number: 6 (lower is better)
Translates to: RTFLLCTAFGRL*GRFTILFSHLL
Trigger: GAGGAGATGGGAGAAGAGGATAGTGAATCTACCCCAAAGTCTGCCAAAGGCAGTGCAAAGAAGGAAAGTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052239.12
CDS TCA 72 bp AGGCAGTTTCTGAAAAAGTTCACTGATGAGCCGTCCTaGTGGATTTGTGGCTACAACTATGGCTTCAAGAAG +
Preference number: 6 (lower is better)
Translates to: RQFLKKFTDEPS*WICGYNYGFKK
Trigger: CTTCTTGAAGCCATAGTTGTAGCCACAAATCCATCAGGACGGCTCATCAGTGAACTTTTTCAGAAACTGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CCA 72 bp CAAGTCAATGGGCTGAGAAACCACTTCATAATAGTCTaGTTGATTTCTCCGCTTTGGAGCCCTAATGAACAG +
Preference number: 6 (lower is better)
Translates to: QVNGLRNHFIIV*LISPLWSPNEQ
Trigger: CTGTTCATTAGGGCTCCAAAGCGGAGAAATCAACCAGACTATTATGAAGTGGTTTCTCAGCCCATTGACTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CAA 72 bp TTAGGAGAAACACCACTCTTCCTACTCAATTTAAGTTaGGGAGAAGCCATGTCATCATCATCAGGCAGAGGG +
Preference number: 6 (lower is better)
Translates to: LGETPLFLLNLS*GEAMSSSSGRG
Trigger: CCCTCTGCCTGATGATGATGACATGGCTTCTCCCAAACTTAAATTGAGTAGGAAGAGTGGTGTTTCTCCTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CAA 90 bp CTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTTGCACTGCCTTaGGCAGACTTTGGGGTAGATTCACTATCCTCTTCTCCCATCTCC +
Preference number: 6 (lower is better)
Translates to: LMLIFRLELSFFALP*ADFGVDSLSSSPIS
Trigger: GGAGATGGGAGAAGAGGATAGTGAATCTACCCCAAAGTCTGCCAAAGGCAGTGCAAAGAAGGAAAGTTCTAAACGAAAAATCAACATGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052239.12
CDS CCA 72 bp TCTTTCCTTTTATCTTTGAGTAACTTCTCCAGGATATaGGCATCATTGTATACCTGGGAGCCCTCCTCATTG +
Preference number: 6 (lower is better)
Translates to: SFLLSLSNFSRI*ASLYTWEPSSL
Trigger: CAATGAGGAGGGCTCCCAGGTATACAATGATGCCCATATCCTGGAGAAGTTACTCAAAGATAAAAGGAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CAA 72 bp CCTCATATATTTCGGAATCTGTCCGGTTCATCCTTCTaGCCCGTTCCAATACTTCAAACATATGCTCCTGAA +
Preference number: 6 (lower is better)
Translates to: PHIFRNLSGSSF*PVPILQTYAPE
Trigger: TTCAGGAGCATATGTTTGAAGTATTGGAACGGGCAAGAAGGATGAACCGGACAGATTCCGAAATATATGAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000135704.2
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CAA 90 bp CTTTCAACATTTTTCCTGATAATGTCAAATGTAAGGGGAGGTTTATaGGGAGAGTTGGGATCCACAGCAGGAATTTCTGCTAAGGAGTCG +
Preference number: 6 (lower is better)
Translates to: LSTFFLIMSNVRGGL*GELGSTAGISAKES
Trigger: CGACTCCTTAGCAGAAATTCCTGCTGTGGATCCCAACTCTCCCAATAAACCTCCCCTTACATTTGACATTATCAGGAAAAATGTTGAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS GCA 72 bp CTCATATATTTCGGAATCTGTCCGGTTCATCCTTCTTaGCCGTTCCAATACTTCAAACATATGCTCCTGAAA +
Preference number: 6 (lower is better)
Translates to: LIYFGICPVHPS*PFQYFKHMLLK
Trigger: TTTCAGGAGCATATGTTTGAAGTATTGGAACGGGCAAGAAGGATGAACCGGACAGATTCCGAAATATATGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000135704.2
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CCA 72 bp CCAGAGTTTACAAGCAGCTTTATACTCAGGGGAATCTaGCTTATAGTAGGCCTTTGCATTGTTAAAAAGCAG +
Preference number: 6 (lower is better)
Translates to: PEFTSSFILRGI*LIVGLCIVKKQ
Trigger: CTGCTTTTTAACAATGCAAAGGCCTACTATAAGCCAGATTCCCCTGAGTATAAAGCTGCTTGTAAACTCTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CAA 72 bp TTTTTCCTGATAATGTCAAATGTAAGGGGAGGTTTATaGGGAGAGTTGGGATCCACAGCAGGAATTTCTGCT +
Preference number: 6 (lower is better)
Translates to: FFLIMSNVRGGL*GELGSTAGISA
Trigger: AGCAGAAATTCCTGCTGTGGATCCCAACTCTCCCAATAAACCTCCCCTTACATTTGACATTATCAGGAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS GCA 72 bp ACTCATGTTGATTTTTCGTTTAGAACTTTCCTTCTTTaGACTGCCTTTGGCAGACTTTGGGGTAGATTCACT +
Preference number: 6 (lower is better)
Translates to: THVDFSFRTFLL*TAFGRLWGRFT
Trigger: AGTGAATCTACCCCAAAGTCTGCCAAAGGCAGTGCAAAGAAGGAAAGTTCTAAACGAAAAATCAACATGAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052239.12
CDS CAA 90 bp CATCATCTTCATCGTCTGCTTCTCCTTTCTGAACAAACTCATTTCTaGTTCGAAGGTACAAATCCCAGAGTTTACAAGCAGCTTTATACT +
Preference number: 6 (lower is better)
Translates to: HHLHRLLLLSEQTHF*FEGTNPRVYKQLYT
Trigger: AGTATAAAGCTGCTTGTAAACTCTGGGATTTGTACCTTCGAACAAGAAATGAGTTTGTTCAGAAAGGAGAAGCAGACGATGAAGATGATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CAA 90 bp AACATGAGTTTCATGTCTTCCATCATTCCTTCTTCACCTGCATATTaGTCATTTCGGATGTTATGCTCAATTATTTTCAGGTCCATTGGC +
Preference number: 6 (lower is better)
Translates to: NMSFMSSIIPSSPAY*SFRMLCSIIFRSIG
Trigger: GCCAATGGACCTGAAAATAATTGAGCATAACATCCGAAATGACAAATATGCAGGTGAAGAAGGAATGATGGAAGACATGAAACTCATGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CCA 72 bp GCTGCAGTTTTAGAACTCGCTTATAGATGGCTGAATTaGGAACGTTATAACGTTTGGCATTTTCAAACATTA +
Preference number: 6 (lower is better)
Translates to: AAVLELAYRWLN*ERYNVWHFQTL
Trigger: TAATGTTTGAAAATGCCAAACGTTATAACGTTCCCAATTCAGCCATCTATAAGCGAGTTCTAAAACTGCAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8
CDS CAA 72 bp CATCATGACAAAGTCCTCTACCATAGAATCTATGTCTaGGTACTTGTTTGCCATCATGTGACTTCGAATTTT +
Preference number: 6 (lower is better)
Translates to: HHDKVLYHRIYV*VLVCHHVTSNF
Trigger: AAAATTCGAAGTCACATGATGGCAAACAAGTACCAAGACATAGATTCTATGGTAGAGGACTTTGTCATGATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000022471.12
ENSMUST00000022474.14
ENSMUST00000052239.12
ENSMUST00000090214.11
ENSMUST00000112092.8
ENSMUST00000112094.8
ENSMUST00000112095.8
ENSMUST00000112098.11
ENSMUST00000123678.8
ENSMUST00000135704.2
ENSMUST00000136237.8
ENSMUST00000146325.8
ENSMUST00000156628.8