Pregenerated sensors for PBP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047104Ensembl transcript IDs: ENSMUST00000050471.4
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTCAAGAATCCCTTGGGCAGGTGGGAATGGGAAAAGGAAAGACATaGCACTCATTGCTGAACCCGATAATAATATGGCAGGAGTGGCCA | + |
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Preference number: 1 (lower is better) Translates to: AQESLGQVGMGKGKT*HSLLNPIIIWQEWP Trigger: TGGCCACTCCTGCCATATTATTATCGGGTTCAGCAATGAGTGGCATGTCTTTCCTTTTCCCATTCCCACCTGCCCAAGGGATTCTTGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR CCA 90 bp | AAAAGTCATCCTAAACTACCTCCCTACAACAGCTCAAGAATCCCTTaGGCAGGTGGGAATGGGAAAAGGAAAGACATGCCACTCATTGCT | + |
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Preference number: 1 (lower is better) Translates to: KSHPKLPPYNSSRIP*AGGNGKRKDMPLIA Trigger: AGCAATGAGTGGCATGTCTTTCCTTTTCCCATTCCCACCTGCCCAAGGGATTCTTGAGCTGTTGTAGGGAGGTAGTTTAGGATGACTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR CCA 90 bp | ATTACCAATATAACGAGTCCATCACAGTGCCAAATCTCCACCAGATaGAGCTTAAGTTTGATCAAAACCAACTGGGTGCAACTATTTGGA | + |
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Preference number: 1 (lower is better) Translates to: ITNITSPSQCQISTR*SLSLIKTNWVQLFG Trigger: TCCAAATAGTTGCACCCAGTTGGTTTTGATCAAACTTAAGCTCCATCTGGTGGAGATTTGGCACTGTGATGGACTCGTTATATTGGTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR-3UTR TCA 90 bp | ACCCAGATACTAAGTCTCTGGTTGTGCAGGTGGGAGACAGGACCTTCAGACAACGAGAACTGGAACCACTaGGCACAGCTCCTGATTCAG | + |
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Preference number: 2 (lower is better) Translates to: TQILSLWLCRWETGPSDNENWNH*AQLLIQ Trigger: CTGAATCAGGAGCTGTGCTCAGTGGTTCCAGTTCTC...GTTGTCTGAAGGTCCTGTCTCCCACCTGCACAACCAGAGACTTAGTATCTGGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR-3UTR GCA 90 bp | TCATGCCAAGCCAGCACACAGCAGAGGTGTCTTCCTGATTGCTTCTTAACAGAGGCAGAGGCCAGTCCTTaGTTTCTTCCTGTAGGCCTG | + |
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Preference number: 2 (lower is better) Translates to: SCQASTQQRCLPDCFLTEAEASP*FLPVGL Trigger: CAGGCCTACAGGAAGAAAGCAAGGACTGGCCTCTGC...CTCTGTTAAGAAGCAATCAGGAAGACACCTCTGCTGTGTGCTGGCTTGGCATGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR CAA 90 bp | TTGTCCAGCTGTATGCCTAGGATCACCCAGATACTAAGTCTCTGGTaGTGCAGGTGGGAGACAGGACCTTCAGACAACTCTGAGAACTGG | + |
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Preference number: 2 (lower is better) Translates to: LSSCMPRITQILSLW*CRWETGPSDNSENW Trigger: CCAGTTCTCAGAGTTGTCTGAAGGTCCTGTCTCCCACCTGCACAACCAGAGACTTAGTATCTGGGTGATCCTAGGCATACAGCTGGACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR-3UTR GCA 90 bp | CCTAGGATCACCCAGATACTAAGTCTCTGGTTGTGCAGGTGGGAGACAGGACCTTCAAAACCAACTGGGTaGAACTATTTGGAATCTTTA | + |
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Preference number: 2 (lower is better) Translates to: PRITQILSLWLCRWETGPSKPTG*NYLESL Trigger: TAAAGATTCCAAATAGTTGCACCCAGTTGGTTTTGA...AGGTCCTGTCTCCCACCTGCACAACCAGAGACTTAGTATCTGGGTGATCCTAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR CAA 90 bp | ACGAGTCCATCACAGTGCCAAATCTCCACCAGATGGAGCTTAAGTTaGATCAAAACCAACTGGGTGCAACTATTTGGAATCTTTAGGGTG | + |
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Preference number: 2 (lower is better) Translates to: TSPSQCQISTRWSLS*IKTNWVQLFGIFRV Trigger: CACCCTAAAGATTCCAAATAGTTGCACCCAGTTGGTTTTGATCAAACTTAAGCTCCATCTGGTGGAGATTTGGCACTGTGATGGACTCGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR-3UTR CAA 90 bp | CACCCAGATACTAAGTCTCTGGTTGTGCAGGTGGGAGACAGGACCTTCAGACAAGGCAGAGGCCAGTCCTaGCTTTCTTCCTGTAGGCCT | + |
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Preference number: 3 (lower is better) Translates to: HPDTKSLVVQVGDRTFRQGRGQS*LSSCRP Trigger: AGGCCTACAGGAAGAAAGCAAGGACTGGCCTCTGCC...TTGTCTGAAGGTCCTGTCTCCCACCTGCACAACCAGAGACTTAGTATCTGGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR-3UTR CAA 90 bp | ATACTAAGTCTCTGGTTGTGCAGGTGGGAGACAGGACCTTCAGACAACTCTGAGCAGCTCAAGAATCCCTaGGGCAGGTGGGAATGGGAA | + |
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Preference number: 3 (lower is better) Translates to: ILSLWLCRWETGPSDNSEQLKNP*GRWEWE Trigger: TTCCCATTCCCACCTGCCCAAGGGATTCTTGAGCTG...CTCAGAGTTGTCTGAAGGTCCTGTCTCCCACCTGCACAACCAGAGACTTAGTAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR CCA 72 bp | ACCTCCCTACAACAGCTCAAGAATCCCTTGGGCAGGTaGGAATGGGAAAAGGAAAGACATGCCACTCATTGC | + |
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Preference number: 3 (lower is better) Translates to: TSLQQLKNPLGR*EWEKERHATHC Trigger: GCAATGAGTGGCATGTCTTTCCTTTTCCCATTCCCACCTGCCCAAGGGATTCTTGAGCTGTTGTAGGGAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR CCA 72 bp | AGCTGTATGCCTAGGATCACCCAGATACTAAGTCTCTaGTTGTGCAGGTGGGAGACAGGACCTTCAGACAAC | + |
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Preference number: 3 (lower is better) Translates to: SCMPRITQILSL*LCRWETGPSDN Trigger: GTTGTCTGAAGGTCCTGTCTCCCACCTGCACAACCAGAGACTTAGTATCTGGGTGATCCTAGGCATACAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR GCA 72 bp | TGCCAAGCCAGCACACAGCAGAGGTGTCTTCCTGATTaGTTCTTAACAGAGCTCTGCTCTTTAATGGAGGCA | + |
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Preference number: 3 (lower is better) Translates to: CQASTQQRCLPD*FLTELCSLMEA Trigger: TGCCTCCATTAAAGAGCAGAGCTCTGTTAAGAAGCAATCAGGAAGACACCTCTGCTGTGTGCTGGCTTGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR-3UTR CAA 90 bp | CACCCAGATACTAAGTCTCTGGTTGTGCAGGTGGGAGACAGGACCTTCAGACAACTTTTCCCTTGGATTTaGCCTTCTTTACTTTCAGAG | + |
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Preference number: 3 (lower is better) Translates to: HPDTKSLVVQVGDRTFRQLFPWI*PSLLSE Trigger: CTCTGAAAGTAAAGAAGGCAAAATCCAAGGGAAAAG...TTGTCTGAAGGTCCTGTCTCCCACCTGCACAACCAGAGACTTAGTATCTGGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR CCA 72 bp | TCCACCAGATGGAGCTTAAGTTTGATCAAAACCAACTaGGTGCAACTATTTGGAATCTTTAGGGTGAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: STRWSLSLIKTN*VQLFGIFRVRK Trigger: TTTTCTCACCCTAAAGATTCCAAATAGTTGCACCCAGTTGGTTTTGATCAAACTTAAGCTCCATCTGGTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| CDS-3UTR TCA 90 bp | TTCAGGACTGCATCCGGGCTCATGCCAAGCCAGCACACAGCAGAGGTGTCTTCCGTCAAGGCCATCCCATaGAATGCTTCCGGGTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: FRTASGLMPSQHTAEVSSVKAIP*NASGSV Trigger: CACAGACCCGGAAGCATTTCATGGGATGGCCTTGAC...GGAAGACACCTCTGCTGTGTGCTGGCTTGGCATGAGCCCGGATGCAGTCCTGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| CDS-3UTR CCA 90 bp | CTACCTCCCTACAACAGCTCAAGAATCCCTTGGGCAGGTGGGAATGGGAAAAGGTGCTCATCCACTTCGTaGAGGCTCAGCGGCCCGGTC | + |
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Preference number: 4 (lower is better) Translates to: LPPYNSSRIPWAGGNGKRCSSTS*RLSGPV Trigger: GACCGGGCCGCTGAGCCTCCACGAAGTGGATGAGCA...CCTTTTCCCATTCCCACCTGCCCAAGGGATTCTTGAGCTGTTGTAGGGAGGTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| CDS-3UTR CCA 90 bp | CACCCAGATACTAAGTCTCTGGTTGTGCAGGTGGGAGACAGGACCTTCAGACAAGGAGGCCAGTGCCCTTaGGAGGTCCGGAACCCACGT | + |
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Preference number: 4 (lower is better) Translates to: HPDTKSLVVQVGDRTFRQGGQCP*EVRNPR Trigger: ACGTGGGTTCCGGACCTCCCAAGGGCACTGGCCTCC...TTGTCTGAAGGTCCTGTCTCCCACCTGCACAACCAGAGACTTAGTATCTGGGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| CDS-3UTR GCA 90 bp | ATACTAAGTCTCTGGTTGTGCAGGTGGGAGACAGGACCTTCAGACAACTCTGAGGTGACCCGCAGTAGGTaGTGGGGCTGCTCATCCACT | + |
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Preference number: 4 (lower is better) Translates to: ILSLWLCRWETGPSDNSEVTRSR*WGCSST Trigger: AGTGGATGAGCAGCCCCAGCACCTACTGCGGGTCAC...CTCAGAGTTGTCTGAAGGTCCTGTCTCCCACCTGCACAACCAGAGACTTAGTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| CDS-3UTR TCA 90 bp | ATACTAAGTCTCTGGTTGTGCAGGTGGGAGACAGGACCTTCAGACAACTCTGAGGGAAGGCTGCAGTTTTaGACTTCCCACGATGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: ILSLWLCRWETGPSDNSEGRLQF*TSHDGL Trigger: GAGACCATCGTGGGAAGTTCAAAACTGCAGCCTTCC...CTCAGAGTTGTCTGAAGGTCCTGTCTCCCACCTGCACAACCAGAGACTTAGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| CDS-3UTR TCA 90 bp | CACCCAGATACTAAGTCTCTGGTTGTGCAGGTGGGAGACAGGACCTTCAGACAACATTGCCTTTCATGTTaGCCACCAGAAAATGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: HPDTKSLVVQVGDRTFRQHCLSC*PPENGA Trigger: GGCACCATTTTCTGGTGGTCAACATGAAAGGCAATG...TTGTCTGAAGGTCCTGTCTCCCACCTGCACAACCAGAGACTTAGTATCTGGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR CAA 72 bp | TGTATGCCTAGGATCACCCAGATACTAAGTCTCTGGTaGTGCAGGTGGGAGACAGGACCTTCAGACAACTCT | + |
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Preference number: 4 (lower is better) Translates to: CMPRITQILSLW*CRWETGPSDNS Trigger: AGAGTTGTCTGAAGGTCCTGTCTCCCACCTGCACAACCAGAGACTTAGTATCTGGGTGATCCTAGGCATACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| CDS-3UTR GCA 90 bp | CTCCACCAGATGGAGCTTAAGTTTGATCAAAACCAACTGGGTGCAACTATTTGGATAGCTGTCCCATTCTaGCTGGTAACACGTGCCGGC | + |
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Preference number: 4 (lower is better) Translates to: LHQMELKFDQNQLGATIWIAVPF*LVTRAG Trigger: GCCGGCACGTGTTACCAGGCAGAATGGGACAGCTAT...CCAAATAGTTGCACCCAGTTGGTTTTGATCAAACTTAAGCTCCATCTGGTGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| CDS-3UTR CCA 90 bp | ATACTAAGTCTCTGGTTGTGCAGGTGGGAGACAGGACCTTCAGACAACTCTGAGCTGTTTGTACAGCTTTaGTACATAGCTGTCCCATTC | + |
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Preference number: 4 (lower is better) Translates to: ILSLWLCRWETGPSDNSELFVQL*YIAVPF Trigger: GAATGGGACAGCTATGTACCAAAGCTGTACAAACAG...CTCAGAGTTGTCTGAAGGTCCTGTCTCCCACCTGCACAACCAGAGACTTAGTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| CDS-3UTR GCA 90 bp | GTGGGAATGGGAAAAGGAAAGACATGCCACTCATTGCTGAACCCGATAATAATAACCACCAGAAAATGGTaGCATTCCCTGTACACGGGT | + |
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Preference number: 4 (lower is better) Translates to: VGMGKGKTCHSLLNPIIITTRKW*HSLYTG Trigger: ACCCGTGTACAGGGAATGGCACCATTTTCTGGTGGT...TATTATTATCGGGTTCAGCAATGAGTGGCATGTCTTTCCTTTTCCCATTCCCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR CAA 72 bp | GCTCTGCTCTTTAATGGAGGCATAAGACACAGATACTaGTCCAGCTGTATGCCTAGGATCACCCAGATACTA | + |
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Preference number: 4 (lower is better) Translates to: ALLFNGGIRHRY*SSCMPRITQIL Trigger: TAGTATCTGGGTGATCCTAGGCATACAGCTGGACAAGTATCTGTGTCTTATGCCTCCATTAAAGAGCAGAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| 3UTR CAA 72 bp | TCACAGTGCCAAATCTCCACCAGATGGAGCTTAAGTTaGATCAAAACCAACTGGGTGCAACTATTTGGAATC | + |
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Preference number: 4 (lower is better) Translates to: SQCQISTRWSLS*IKTNWVQLFGI Trigger: GATTCCAAATAGTTGCACCCAGTTGGTTTTGATCAAACTTAAGCTCCATCTGGTGGAGATTTGGCACTGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| CDS-3UTR CAA 90 bp | GTGGGAATGGGAAAAGGAAAGACATGCCACTCATTGCTGAACCCGATAATAATACGGAAGGCTGCAGTTTaGAACTTCCCACGATGGTCT | + |
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Preference number: 5 (lower is better) Translates to: VGMGKGKTCHSLLNPIIIRKAAV*NFPRWS Trigger: AGACCATCGTGGGAAGTTCAAAACTGCAGCCTTCCG...TATTATTATCGGGTTCAGCAATGAGTGGCATGTCTTTCCTTTTCCCATTCCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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| CDS-3UTR CAA 90 bp | GTGGGAATGGGAAAAGGAAAGACATGCCACTCATTGCTGAACCCGATAATAATAGCTGTTTGTACAGCTTaGGTACATAGCTGTCCCATT | + |
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Preference number: 5 (lower is better) Translates to: VGMGKGKTCHSLLNPIIIAVCTA*VHSCPI Trigger: AATGGGACAGCTATGTACCAAAGCTGTACAAACAGC...TATTATTATCGGGTTCAGCAATGAGTGGCATGTCTTTCCTTTTCCCATTCCCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050471.4 |
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