Pregenerated sensors for PBLD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020072Ensembl transcript IDs: ENSMUST00000020262.5, ENSMUST00000124784.8
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCGCACCTCCATCAGGTGTCTTCCCTTTTGGGTTCACACGACGACTaGACCAAGCTCTGTGCATTTGCTGTTGAGTTGGGTTGGGTTCTG | + |
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Preference number: 1 (lower is better) Translates to: PHLHQVSSLLGSHDD*TKLCAFAVELGWVL Trigger: CAGAACCCAACCCAACTCAACAGCAAATGCACAGAGCTTGGTTCAGTCGTCGTGTGAACCCAAAAGGGAAGACACCTGATGGAGGTGCGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR GCA 90 bp | AAGGCCCCCACACATATGTCTAAATTTCTTCTCATTTCGTGTCAATaGCTTTATCATTCTAAATTTCTTCTCGTTCCTTATCAATGCACC | + |
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Preference number: 1 (lower is better) Translates to: KAPTHMSKFLLISCQ*LYHSKFLLVPYQCT Trigger: GGTGCATTGATAAGGAACGAGAAGAAATTTAGAATGATAAAGGCATTGACACGAAATGAGAAGAAATTTAGACATATGTGTGGGGGCCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR-3UTR CCA 90 bp | ACACACACACACACAATTTGTAAAATCTATCAGAAACCATTTGATGGTGGCACGCACCATGTAGAACAGTaGCCCCAAGCCCAGCAGGAA | + |
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Preference number: 2 (lower is better) Translates to: THTHTICKIYQKPFDGGTHHVEQ*PQAQQE Trigger: TTCCTGCTGGGCTTGGGGCCACTGTTCTACATGGTG...CGTGCCACCATCAAATGGTTTCTGATAGATTTTACAAATTGTGTGTGTGTGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR-3UTR TCA 90 bp | CGTGTCAATGCCTTTATCATTCTAAATTTCTTCTCGTTCCTTATCAATGCACCTATCTGCTGTGGGGACTaGAGATGCACACACAGGCAG | + |
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Preference number: 2 (lower is better) Translates to: RVNAFIILNFFSFLINAPICCGD*RCTHRQ Trigger: CTGCCTGTGTGTGCATCTTCAGTCCCCACAGCAGAT...AGGTGCATTGATAAGGAACGAGAAGAAATTTAGAATGATAAAGGCATTGACACG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR CAA 90 bp | ACACAGGAGGGAAAGATTTCGTCTCACACGCCCTTAGCGTGTATTTaGATCATCACATCACCAAATCAGATACCTACTGTTGTAATCTCC | + |
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Preference number: 2 (lower is better) Translates to: TQEGKISSHTPLACI*IITSPNQIPTVVIS Trigger: GGAGATTACAACAGTAGGTATCTGATTTGGTGATGTGATGATCAAAATACACGCTAAGGGCGTGTGAGACGAAATCTTTCCCTCCTGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR-3UTR TCA 90 bp | ATTGGGTCGATTACAATGATTGTGACTCTGGGCATGATGGTGCATAGCATTAACTTTGATTGGCAGTCATaGTCAAAAGAAGGGGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: IGSITMIVTLGMMVHSINFDWQS*SKEGAA Trigger: TGCTGCCCCTTCTTTTGATCATGACTGCCAATCAAA...GTTAATGCTATGCACCATCATGCCCAGAGTCACAATCATTGTAATCGACCCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR CAA 90 bp | ATCATTCTAAATTTCTTCTCGTTCCTTATCAATGCACCTCTCACTTaGATTGGCAGTCATGATCAAAAGAAGGGGCAGCATCCCTATCTG | + |
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Preference number: 2 (lower is better) Translates to: IILNFFSFLINAPLT*IGSHDQKKGQHPYL Trigger: CAGATAGGGATGCTGCCCCTTCTTTTGATCATGACTGCCAATCAAAGTGAGAGGTGCATTGATAAGGAACGAGAAGAAATTTAGAATGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR CCA 72 bp | GGCAGAGCTCAGAGCCCACCATCAGGAAAAGGATTCTaGAGACACTACCGCACCTCCATCAGGTGTCTTCCC | + |
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Preference number: 3 (lower is better) Translates to: GRAQSPPSGKGF*RHYRTSIRCLP Trigger: GGGAAGACACCTGATGGAGGTGCGGTAGTGTCTCCAGAATCCTTTTCCTGATGGTGGGCTCTGAGCTCTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR TCA 72 bp | TTCCTAAACACTAGGCCTCCTCTGAGTCTTTCCACATaGACTGTCTCCCCTGGCTGTCTCCACAGTCGCGTG | + |
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Preference number: 3 (lower is better) Translates to: FLNTRPPLSLST*TVSPGCLHSRV Trigger: CACGCGACTGTGGAGACAGCCAGGGGAGACAGTTCATGTGGAAAGACTCAGAGGAGGCCTAGTGTTTAGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR CCA 72 bp | CATGATCAAAAGAAGGGGCAGCATCCCTATCTGCTGTaGGGACTGAAGATGCACACACAGGCAGAGCTCAGA | + |
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Preference number: 3 (lower is better) Translates to: HDQKKGQHPYLL*GLKMHTQAELR Trigger: TCTGAGCTCTGCCTGTGTGTGCATCTTCAGTCCCCACAGCAGATAGGGATGCTGCCCCTTCTTTTGATCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR-3UTR CAA 90 bp | ACCATCAGGAAAAGGATTCTGGAGACACTACCGCACCTCCATCAGGTGTCTTCCGCATTTGCTGTTGAGTaGGGTTGGGTTCTGCGCTCT | + |
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Preference number: 3 (lower is better) Translates to: TIRKRILETLPHLHQVSSAFAVE*GWVLRS Trigger: AGAGCGCAGAACCCAACCCAACTCAACAGCAAATGC...GGAAGACACCTGATGGAGGTGCGGTAGTGTCTCCAGAATCCTTTTCCTGATGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR GCA 72 bp | AGCTCTGTGCATTTGCTGTTGAGTTGGGTTGGGTTCTaGGCTCTAGAGAAGACACCATGTAGAACAGTGGCC | + |
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Preference number: 3 (lower is better) Translates to: SSVHLLLSWVGF*ALEKTPCRTVA Trigger: GGCCACTGTTCTACATGGTGTCTTCTCTAGAGCGCAGAACCCAACCCAACTCAACAGCAAATGCACAGAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR TCA 72 bp | CATCAGGTGTCTTCCCTTTTGGGTTCACACGACGACTaGACCAAGCTCTGTGCATTTGCTGTTGAGTTGGGT | + |
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Preference number: 3 (lower is better) Translates to: HQVSSLLGSHDD*TKLCAFAVELG Trigger: ACCCAACTCAACAGCAAATGCACAGAGCTTGGTTCAGTCGTCGTGTGAACCCAAAAGGGAAGACACCTGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR TCA 72 bp | CCTTATCAATGCACCTCTCACTTTGATTGGCAGTCATaGTCAAAAGAAGGGGCAGCATCCCTATCTGCTGTG | + |
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Preference number: 3 (lower is better) Translates to: PYQCTSHFDWQS*SKEGAASLSAV Trigger: CACAGCAGATAGGGATGCTGCCCCTTCTTTTGATCATGACTGCCAATCAAAGTGAGAGGTGCATTGATAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR CCA 72 bp | GTCTTTAGTACTGCGCCTGCATTTCCACAGAGTTATTaGGTCGATTACAATGATTGTGACTCTGGGCATGAT | + |
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Preference number: 3 (lower is better) Translates to: VFSTAPAFPQSY*VDYNDCDSGHD Trigger: ATCATGCCCAGAGTCACAATCATTGTAATCGACCCAATAACTCTGTGGAAATGCAGGCGCAGTACTAAAGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR-3UTR CAA 90 bp | CATTCTAAATTTCTTCTCGTTCCTTATCAATGCACCTCTCACTTTGATTGGCAGTCTGTGCATTTGCTGTaGAGTTGGGTTGGGTTCTGC | + |
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Preference number: 3 (lower is better) Translates to: HSKFLLVPYQCTSHFDWQSVHLL*SWVGFC Trigger: GCAGAACCCAACCCAACTCAACAGCAAATGCACAGA...CTGCCAATCAAAGTGAGAGGTGCATTGATAAGGAACGAGAAGAAATTTAGAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR TCA 72 bp | TCAGATACCTACTGTTGTAATCTCCTGGGTTTGTCCTaGTTGTTACTCCTAGCTGAGTTCAAAATACAAAGG | + |
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Preference number: 3 (lower is better) Translates to: SDTYCCNLLGLS*LLLLAEFKIQR Trigger: CCTTTGTATTTTGAACTCAGCTAGGAGTAACAATCAGGACAAACCCAGGAGATTACAACAGTAGGTATCTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS-3UTR GCA 90 bp | GACACTACCGCACCTCCATCAGGTGTCTTCCCTTTTGGGTTCACACGACGACTGCTCCAGGAGGCAGACTaGGGCAGGATTGCCCCGGAA | + |
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Preference number: 4 (lower is better) Translates to: DTTAPPSGVFPFGFTRRLLQEAD*GRIAPE Trigger: TTCCGGGGCAATCCTGCCGCAGTCTGCCTCCTGGAG...CAGTCGTCGTGTGAACCCAAAAGGGAAGACACCTGATGGAGGTGCGGTAGTGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS-3UTR CCA 90 bp | ACCATCAGGAAAAGGATTCTGGAGACACTACCGCACCTCCATCAGGTGTCTTCCCTGCAGAAGCCAGCGTaGCGTGGCCACACAAGGGGA | + |
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Preference number: 4 (lower is better) Translates to: TIRKRILETLPHLHQVSSLQKPA*RGHTRG Trigger: TCCCCTTGTGTGGCCACGCCACGCTGGCTTCTGCAG...GGAAGACACCTGATGGAGGTGCGGTAGTGTCTCCAGAATCCTTTTCCTGATGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS-3UTR CCA 90 bp | GAGCTCAGAGCCCACCATCAGGAAAAGGATTCTGGAGACACTACCGCACCTCCAGTCCTGGGGGAAGGTTaGGTAGACAGGAAAGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: ELRAHHQEKDSGDTTAPPVLGEG*VDRKVQ Trigger: CTGGACTTTCCTGTCTACCCAACCTTCCCCCAGGAC...TGGAGGTGCGGTAGTGTCTCCAGAATCCTTTTCCTGATGGTGGGCTCTGAGCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS-3UTR TCA 90 bp | ACCTCCATCAGGTGTCTTCCCTTTTGGGTTCACACGACGACTGAACCAAGCTCTCCTCGGCGGGAACACTaGAAGGCTCGCATTTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: TSIRCLPFWVHTTTEPSSPRREH*KARISF Trigger: GAAGGAAATGCGAGCCTTTCAGTGTTCCCGCCGAGG...AGAGCTTGGTTCAGTCGTCGTGTGAACCCAAAAGGGAAGACACCTGATGGAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS-3UTR GCA 90 bp | GGGGTCGAGTTGGAGGCTAGCTTGGTCTACATAGAGAGTTTCTTCCCAGCCACGCATCTTCATCCAATGTaGGCTCCAGGAGGCAGACTG | + |
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Preference number: 4 (lower is better) Translates to: GVELEASLVYIESFFPATHLHPM*APGGRL Trigger: CAGTCTGCCTCCTGGAGCGCACATTGGATGAAGATG...CGTGGCTGGGAAGAAACTCTCTATGTAGACCAAGCTAGCCTCCAACTCGACCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS-3UTR GCA 90 bp | GGGGTCGAGTTGGAGGCTAGCTTGGTCTACATAGAGAGTTTCTTCCCAGCCACGCCCTGTCTTCTCAATTaGAGGCAGAGGCTCTGTGTT | + |
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Preference number: 4 (lower is better) Translates to: GVELEASLVYIESFFPATPCLLN*RQRLCV Trigger: AACACAGAGCCTCTGCCTGCAATTGAGAAGACAGGG...CGTGGCTGGGAAGAAACTCTCTATGTAGACCAAGCTAGCCTCCAACTCGACCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS-3UTR CCA 90 bp | GGGGTCGAGTTGGAGGCTAGCTTGGTCTACATAGAGAGTTTCTTCCCAGCCACGCATCTTCTTCTCTTCTaGCCTTTAGCTCCCCGCTCA | + |
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Preference number: 4 (lower is better) Translates to: GVELEASLVYIESFFPATHLLLF*PLAPRS Trigger: TGAGCGGGGAGCTAAAGGCCAGAAGAGAAGAAGATG...CGTGGCTGGGAAGAAACTCTCTATGTAGACCAAGCTAGCCTCCAACTCGACCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS-3UTR CCA 90 bp | ACCATCAGGAAAAGGATTCTGGAGACACTACCGCACCTCCATCAGGTGTCTTCCCAAGAAGAGTGTGGGTaGACCCTGTCACCGGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: TIRKRILETLPHLHQVSSQEECG*TLSPGL Trigger: AAGACCCGGTGACAGGGTCCACCCACACTCTTCTTG...GGAAGACACCTGATGGAGGTGCGGTAGTGTCTCCAGAATCCTTTTCCTGATGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR CAA 72 bp | CACACGACGACTGAACCAAGCTCTGTGCATTTGCTGTaGAGTTGGGTTGGGTTCTGCGCTCTAGAGAAGACA | + |
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Preference number: 4 (lower is better) Translates to: HTTTEPSSVHLL*SWVGFCALEKT Trigger: TGTCTTCTCTAGAGCGCAGAACCCAACCCAACTCAACAGCAAATGCACAGAGCTTGGTTCAGTCGTCGTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS-3UTR GCA 90 bp | ACCATCAGGAAAAGGATTCTGGAGACACTACCGCACCTCCATCAGGTGTCTTCCCAGTTGGTTGCAGTTTaGGGACAAAAGCGGTTTCAG | + |
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Preference number: 4 (lower is better) Translates to: TIRKRILETLPHLHQVSSQLVAV*GQKRFQ Trigger: CTGAAACCGCTTTTGTCCGCAAACTGCAACCAACTG...GGAAGACACCTGATGGAGGTGCGGTAGTGTCTCCAGAATCCTTTTCCTGATGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS-3UTR GCA 90 bp | GTCTCACACGCCCTTAGCGTGTATTTTGATCATCACATCACCAAATCAGATACCTTGAAACAGCACAGCTaGAGAAGCCAGCGTGGCGTG | + |
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Preference number: 4 (lower is better) Translates to: VSHALSVYFDHHITKSDTLKQHS*RSQRGV Trigger: CACGCCACGCTGGCTTCTGCAGCTGTGCTGTTTCAA...GGTATCTGATTTGGTGATGTGATGATCAAAATACACGCTAAGGGCGTGTGAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS-3UTR CCA 90 bp | ACACACACACACACAATTTGTAAAATCTATCAGAAACCATTTGATGGTGGCACGGGGCCAAGAAGAGTGTaGGTGGACCCTGTCACCGGG | + |
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Preference number: 4 (lower is better) Translates to: THTHTICKIYQKPFDGGTGPRRV*VDPVTG Trigger: CCCGGTGACAGGGTCCACCCACACTCTTCTTGGCCC...CGTGCCACCATCAAATGGTTTCTGATAGATTTTACAAATTGTGTGTGTGTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS-3UTR CCA 90 bp | ACACACACACACACAATTTGTAAAATCTATCAGAAACCATTTGATGGTGGCACGGGACCAGGAGGTTTTTaGTATCTGGAGAGTACCGGA | + |
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Preference number: 4 (lower is better) Translates to: THTHTICKIYQKPFDGGTGPGGF*YLESTG Trigger: TCCGGTACTCTCCAGATACCAAAAACCTCCTGGTCC...CGTGCCACCATCAAATGGTTTCTGATAGATTTTACAAATTGTGTGTGTGTGTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS-3UTR CCA 90 bp | CGTGTCAATGCCTTTATCATTCTAAATTTCTTCTCGTTCCTTATCAATGCACCTACGGCGCGAAGCATCTaGAGTAGAAGTCATACAGGG | + |
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Preference number: 4 (lower is better) Translates to: RVNAFIILNFFSFLINAPTARSI*SRSHTG Trigger: CCCTGTATGACTTCTACTCCAGATGCTTCGCGCCGT...AGGTGCATTGATAAGGAACGAGAAGAAATTTAGAATGATAAAGGCATTGACACG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| 3UTR CAA 72 bp | GGAAAGATTTCGTCTCACACGCCCTTAGCGTGTATTTaGATCATCACATCACCAAATCAGATACCTACTGTT | + |
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Preference number: 4 (lower is better) Translates to: GKISSHTPLACI*IITSPNQIPTV Trigger: AACAGTAGGTATCTGATTTGGTGATGTGATGATCAAAATACACGCTAAGGGCGTGTGAGACGAAATCTTTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS-3UTR GCA 90 bp | CATTCTAAATTTCTTCTCGTTCCTTATCAATGCACCTCTCACTTTGATTGGCAGGAGGTTCATTTCCCTTaGAATGTCCTGATGAGCATC | + |
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Preference number: 4 (lower is better) Translates to: HSKFLLVPYQCTSHFDWQEVHFP*NVLMSI Trigger: GATGCTCATCAGGACATTGCAAGGGAAATGAACCTC...CTGCCAATCAAAGTGAGAGGTGCATTGATAAGGAACGAGAAGAAATTTAGAATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS GCA 90 bp | GATTGGGAGCTTCATTTTCCTCGCTGGCTCTGTCTGAGGGCTCCCTaGCCTGCTCGGAGCCCGTTTCACTTCCAGCTGGCAGGTAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: DWELHFPRWLCLRAP*PARSPFHFQLAGRK Trigger: TTTCCTACCTGCCAGCTGGAAGTGAAACGGGCTCCGAGCAGGGCAGGGAGCCCTCAGACAGAGCCAGCGAGGAAAATGAAGCTCCCAATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124784.8 |
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| CDS CCA 90 bp | TGCAGAAGCCAGCGTGGCGTGGCCACACAAGGGGAACTCGGCCTCTaGGGTAAACCACCTCAGCCCAAAACGGGAACTTTGTGTGAAGTC | + |
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Preference number: 5 (lower is better) Translates to: CRSQRGVATQGELGL*GKPPQPKTGTLCEV Trigger: GACTTCACACAAAGTTCCCGTTTTGGGCTGAGGTGGTTTACCCCAGAGGCCGAGTTCCCCTTGTGTGGCCACGCCACGCTGGCTTCTGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020262.5 ENSMUST00000124784.8 |
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| CDS TCA 90 bp | TCTGCTATGAAGATTGGGAGCTTCATTTTCCTCGCTGGCTCTGTCTaGGGGCTCCCTGCCCTGCTCGGAGCCCGTTTCACTTCCAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: SAMKIGSFIFLAGSV*GLPALLGARFTSSW Trigger: CCAGCTGGAAGTGAAACGGGCTCCGAGCAGGGCAGGGAGCCCTCAGACAGAGCCAGCGAGGAAAATGAAGCTCCCAATCTTCATAGCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124784.8 |
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| CDS GCA 90 bp | GACTGCGGCAGGATTGCCCCGGAAAGCTGTCGCAGTGAACGCATCTaGTATGAAGATTGGGAGCTTCATTTTCCTCGCTGGCTCTGTCTG | + |
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Preference number: 5 (lower is better) Translates to: DCGRIAPESCRSERI*YEDWELHFPRWLCL Trigger: CAGACAGAGCCAGCGAGGAAAATGAAGCTCCCAATCTTCATAGCAGATGCGTTCACTGCGACAGCTTTCCGGGGCAATCCTGCCGCAGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124784.8 |
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| CDS CCA 90 bp | CCTGTCATAAGAATCGCTGAGCCGGACCAGGAGGTTTTTGGTATCTaGAGAGTACCGGATGTCCTGGACCAGGGTGTCACCTATGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: PVIRIAEPDQEVFGI*RVPDVLDQGVTYGC Trigger: GCAGCCATAGGTGACACCCTGGTCCAGGACATCCGGTACTCTCCAGATACCAAAAACCTCCTGGTCCGGCTCAGCGATTCTTATGACAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS CCA 90 bp | AGCCGGACCAGGAGGTTTTTGGTATCTGGAGAGTACCGGATGTCCTaGACCAGGGTGTCACCTATGGCTGCCTTTATCAAGTCTTCAACT | + |
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Preference number: 5 (lower is better) Translates to: SRTRRFLVSGEYRMS*TRVSPMAAFIKSST Trigger: AGTTGAAGACTTGATAAAGGCAGCCATAGGTGACACCCTGGTCCAGGACATCCGGTACTCTCCAGATACCAAAAACCTCCTGGTCCGGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS-3UTR CAA 90 bp | AAGCTCTGTGCATTTGCTGTTGAGTTGGGTTGGGTTCTGCGCTCTAGAGAAGACAGTCCTGGGGGAAGGTaGGGTAGACAGGAAAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: KLCAFAVELGWVLRSREDSPGGR*GRQESP Trigger: TGGACTTTCCTGTCTACCCAACCTTCCCCCAGGACT...GTCTTCTCTAGAGCGCAGAACCCAACCCAACTCAACAGCAAATGCACAGAGCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS-3UTR CAA 90 bp | GTCGAGTTGGAGGCTAGCTTGGTCTACATAGAGAGTTTCTTCCCAGCCACGGCTCCCAAAACGGGAACTTaGTGTGAAGTCATCAGTTGG | + |
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Preference number: 5 (lower is better) Translates to: VELEASLVYIESFFPATAPKTGT*CEVISW Trigger: CCAACTGATGACTTCACACAAAGTTCCCGTTTTGGG...AGCCGTGGCTGGGAAGAAACTCTCTATGTAGACCAAGCTAGCCTCCAACTCGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS TCA 90 bp | TGTTCACCTTCAGGCTCTCTAGAAAGGACCTGTCATAAGAATCGCTaGGCCGGACCAGGAGGTTTTTGGTATCTGGAGAGTACCGGATGT | + |
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Preference number: 5 (lower is better) Translates to: CSPSGSLERTCHKNR*AGPGGFWYLESTGC Trigger: ACATCCGGTACTCTCCAGATACCAAAAACCTCCTGGTCCGGCTCAGCGATTCTTATGACAGGTCCTTTCTAGAGAGCCTGAAGGTGAACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS GCA 90 bp | CACCTCAGCCCAAAACGGGAACTTTGTGTGAAGTCATCAGTTGGTTaGAGTTTGCGGACAAAAGCGGTTTCAGAGAGGTTCATTTCCCTT | + |
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Preference number: 5 (lower is better) Translates to: HLSPKRELCVKSSVG*SLRTKAVSERFISL Trigger: AAGGGAAATGAACCTCTCTGAAACCGCTTTTGTCCGCAAACTGCAACCAACTGATGACTTCACACAAAGTTCCCGTTTTGGGCTGAGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020262.5 ENSMUST00000124784.8 |
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| CDS CCA 90 bp | AAACCACCTCAGCCCAAAACGGGAACTTTGTGTGAAGTCATCAGTTaGTTGCAGTTTGCGGACAAAAGCGGTTTCAGAGAGGTTCATTTC | + |
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Preference number: 5 (lower is better) Translates to: KPPQPKTGTLCEVIS*LQFADKSGFREVHF Trigger: GAAATGAACCTCTCTGAAACCGCTTTTGTCCGCAAACTGCAACCAACTGATGACTTCACACAAAGTTCCCGTTTTGGGCTGAGGTGGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020262.5 ENSMUST00000124784.8 |
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| CDS-3UTR CAA 90 bp | CGTGTCAATGCCTTTATCATTCTAAATTTCTTCTCGTTCCTTATCAATGCACCTAGAGGTTCATTTCCCTaGCAATGTCCTGATGAGCAT | + |
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Preference number: 5 (lower is better) Translates to: RVNAFIILNFFSFLINAPRGSFP*QCPDEH Trigger: ATGCTCATCAGGACATTGCAAGGGAAATGAACCTCT...AGGTGCATTGATAAGGAACGAGAAGAAATTTAGAATGATAAAGGCATTGACACG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS TCA 72 bp | AAGATTGGGAGCTTCATTTTCCTCGCTGGCTCTGTCTaGGGGCTCCCTGCCCTGCTCGGAGCCCGTTTCACT | + |
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Preference number: 6 (lower is better) Translates to: KIGSFIFLAGSV*GLPALLGARFT Trigger: AGTGAAACGGGCTCCGAGCAGGGCAGGGAGCCCTCAGACAGAGCCAGCGAGGAAAATGAAGCTCCCAATCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124784.8 |
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| CDS CCA 72 bp | AGAATCGCTGAGCCGGACCAGGAGGTTTTTGGTATCTaGAGAGTACCGGATGTCCTGGACCAGGGTGTCACC | + |
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Preference number: 6 (lower is better) Translates to: RIAEPDQEVFGI*RVPDVLDQGVT Trigger: GGTGACACCCTGGTCCAGGACATCCGGTACTCTCCAGATACCAAAAACCTCCTGGTCCGGCTCAGCGATTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS CAA 90 bp | GCATCTTCATCCAATGTGCGCTCCAGGAGGCAGACTGCGGCAGGATaGCCCCGGAAAGCTGTCGCAGTGAACGCATCTGCTATGAAGATT | + |
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Preference number: 6 (lower is better) Translates to: ASSSNVRSRRQTAAG*PRKAVAVNASAMKI Trigger: AATCTTCATAGCAGATGCGTTCACTGCGACAGCTTTCCGGGGCAATCCTGCCGCAGTCTGCCTCCTGGAGCGCACATTGGATGAAGATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020262.5 ENSMUST00000124784.8 |
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| CDS GCA 72 bp | AGGATTGCCCCGGAAAGCTGTCGCAGTGAACGCATCTaGTATGAAGATTGGGAGCTTCATTTTCCTCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: RIAPESCRSERI*YEDWELHFPRW Trigger: CCAGCGAGGAAAATGAAGCTCCCAATCTTCATAGCAGATGCGTTCACTGCGACAGCTTTCCGGGGCAATCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124784.8 |
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| CDS CCA 72 bp | AGGAGGTTTTTGGTATCTGGAGAGTACCGGATGTCCTaGACCAGGGTGTCACCTATGGCTGCCTTTATCAAG | + |
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Preference number: 6 (lower is better) Translates to: RRFLVSGEYRMS*TRVSPMAAFIK Trigger: CTTGATAAAGGCAGCCATAGGTGACACCCTGGTCCAGGACATCCGGTACTCTCCAGATACCAAAAACCTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS CCA 72 bp | GAAAGCTGTCGCAGTGAACGCATCTGCTATGAAGATTaGGAGCTTCATTTTCCTCGCTGGCTCTGTCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: ESCRSERICYED*ELHFPRWLCLR Trigger: CCTCAGACAGAGCCAGCGAGGAAAATGAAGCTCCCAATCTTCATAGCAGATGCGTTCACTGCGACAGCTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124784.8 |
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| CDS CAA 72 bp | CTCTGGGGTAAACCACCTCAGCCCAAAACGGGAACTTaGTGTGAAGTCATCAGTTGGTTGCAGTTTGCGGAC | + |
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Preference number: 6 (lower is better) Translates to: LWGKPPQPKTGT*CEVISWLQFAD Trigger: GTCCGCAAACTGCAACCAACTGATGACTTCACACAAAGTTCCCGTTTTGGGCTGAGGTGGTTTACCCCAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020262.5 ENSMUST00000124784.8 |
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| CDS TCA 72 bp | TCAGGCTCTCTAGAAAGGACCTGTCATAAGAATCGCTaGGCCGGACCAGGAGGTTTTTGGTATCTGGAGAGT | + |
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Preference number: 6 (lower is better) Translates to: SGSLERTCHKNR*AGPGGFWYLES Trigger: ACTCTCCAGATACCAAAAACCTCCTGGTCCGGCTCAGCGATTCTTATGACAGGTCCTTTCTAGAGAGCCTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS CAA 90 bp | CCACCTCAGCCCAAAACGGGAACTTTGTGTGAAGTCATCAGTTGGTaGCAGTTTGCGGACAAAAGCGGTTTCAGAGAGGTTCATTTCCCT | + |
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Preference number: 6 (lower is better) Translates to: PPQPKTGTLCEVISW*QFADKSGFREVHFP Trigger: AGGGAAATGAACCTCTCTGAAACCGCTTTTGTCCGCAAACTGCAACCAACTGATGACTTCACACAAAGTTCCCGTTTTGGGCTGAGGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020262.5 ENSMUST00000124784.8 |
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| CDS TCA 72 bp | CTTCTTCTCTTCTGGCCTTTAGCTCCCCGCTCATTGTaGCAAAGGTCAGGGTGCTGTTCGTGTTCTTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: LLLFWPLAPRSL*QRSGCCSCSFF Trigger: AAAGAAAGAACACGAACAGCACCCTGACCTTTGTCACAATGAGCGGGGAGCTAAAGGCCAGAAGAGAAGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020262.5 |
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| CDS CCA 72 bp | CAGCCCAAAACGGGAACTTTGTGTGAAGTCATCAGTTaGTTGCAGTTTGCGGACAAAAGCGGTTTCAGAGAG | + |
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Preference number: 6 (lower is better) Translates to: QPKTGTLCEVIS*LQFADKSGFRE Trigger: CTCTCTGAAACCGCTTTTGTCCGCAAACTGCAACCAACTGATGACTTCACACAAAGTTCCCGTTTTGGGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020262.5 ENSMUST00000124784.8 |
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| CDS CAA 90 bp | AGCCCAAAACGGGAACTTTGTGTGAAGTCATCAGTTGGTTGCAGTTaGCGGACAAAAGCGGTTTCAGAGAGGTTCATTTCCCTTGCAATG | + |
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Preference number: 6 (lower is better) Translates to: SPKRELCVKSSVGCS*RTKAVSERFISLAM Trigger: CATTGCAAGGGAAATGAACCTCTCTGAAACCGCTTTTGTCCGCAAACTGCAACCAACTGATGACTTCACACAAAGTTCCCGTTTTGGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020262.5 ENSMUST00000124784.8 |
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| CDS GCA 72 bp | CCAAAACGGGAACTTTGTGTGAAGTCATCAGTTGGTTaGAGTTTGCGGACAAAAGCGGTTTCAGAGAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: PKRELCVKSSVG*SLRTKAVSERF Trigger: GAACCTCTCTGAAACCGCTTTTGTCCGCAAACTGCAACCAACTGATGACTTCACACAAAGTTCCCGTTTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020262.5 ENSMUST00000124784.8 |
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| CDS CAA 72 bp | CGGGAACTTTGTGTGAAGTCATCAGTTGGTTGCAGTTaGCGGACAAAAGCGGTTTCAGAGAGGTTCATTTCC | + |
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Preference number: 6 (lower is better) Translates to: RELCVKSSVGCS*RTKAVSERFIS Trigger: GGAAATGAACCTCTCTGAAACCGCTTTTGTCCGCAAACTGCAACCAACTGATGACTTCACACAAAGTTCCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020262.5 ENSMUST00000124784.8 |
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| CDS CAA 72 bp | CCCAAAACGGGAACTTTGTGTGAAGTCATCAGTTGGTaGCAGTTTGCGGACAAAAGCGGTTTCAGAGAGGTT | + |
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Preference number: 6 (lower is better) Translates to: PKTGTLCEVISW*QFADKSGFREV Trigger: AACCTCTCTGAAACCGCTTTTGTCCGCAAACTGCAACCAACTGATGACTTCACACAAAGTTCCCGTTTTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020262.5 ENSMUST00000124784.8 |
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