Pregenerated sensors for PBK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022033Ensembl transcript IDs: ENSMUST00000022612.10
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCCAGGGCGCATGGGCTGACAGGCCAGCTGAAGGACTGACACTATaGGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTA | + |
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Preference number: 1 (lower is better) Translates to: SQGAWADRPAEGLTL*ADRYLYHMYVVKFL Trigger: TAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCATAGTGTCAGTCCTTCAGCTGGCCTGTCAGCCCATGCGCCCTGGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| 3UTR TCA 72 bp | CCCAGGGCGCATGGGCTGACAGGCCAGCTGAAGGACTaGCACTATGAGCAGACAGATATCTGTACCACATGT | + |
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Preference number: 3 (lower is better) Translates to: PRAHGLTGQLKD*HYEQTDICTTC Trigger: ACATGTGGTACAGATATCTGTCTGCTCATAGTGTCAGTCCTTCAGCTGGCCTGTCAGCCCATGCGCCCTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| 3UTR TCA 72 bp | GCATGGGCTGACAGGCCAGCTGAAGGACTGACACTATaGGCAGACAGATATCTGTACCACATGTACGTAGTG | + |
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Preference number: 3 (lower is better) Translates to: AWADRPAEGLTL*ADRYLYHMYVV Trigger: CACTACGTACATGTGGTACAGATATCTGTCTGCTCATAGTGTCAGTCCTTCAGCTGGCCTGTCAGCCCATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| 3UTR TCA 72 bp | ATATCTAAAAAGATCTGTAACAAAGCAATGGTCCCTTaGTTCTTAAGTCATCTTAGACAGGGGTCACTAGTG | + |
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Preference number: 3 (lower is better) Translates to: ISKKICNKAMVP*FLSHLRQGSLV Trigger: CACTAGTGACCCCTGTCTAAGATGACTTAAGAATCAAGGGACCATTGCTTTGTTACAGATCTTTTTAGATAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR TCA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCAACGGCCCAAGGAGAATaGGACAACCCTCTTGGAGAT | + |
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Preference number: 4 (lower is better) Translates to: MSRQISVPHVRSEIFSNPTAQGE*DNPLGD Trigger: ATCTCCAAGAGGGTTGTCTCATTCTCCTTGGGCCGT...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR GCA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCACCAAAGCCAAGCTTCTaGATAAATGGAGAGGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: MSRQISVPHVRSEIFSNPPKPSF*INGEAG Trigger: CCCTGCCTCTCCATTTATGCAGAAGCTTGGCTTTGG...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR CCA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCAGGTACTTTAGCCCTCTaGCCATGTGCAAAGCAACTC | + |
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Preference number: 4 (lower is better) Translates to: MSRQISVPHVRSEIFSNPGTLAL*PCAKQL Trigger: GAGTTGCTTTGCACATGGCCAGAGGGCTAAAGTACC...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR CCA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCACTTCCAACGCTTCCTTaGGTTTCCATGGCTCAGTAC | + |
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Preference number: 4 (lower is better) Translates to: MSRQISVPHVRSEIFSNPLPTLP*VSMAQY Trigger: GTACTGAGCCATGGAAACCCAAGGAAGCGTTGGAAG...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR GCA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCAAGCCCTCTGGCCATGTaGAAAGCAACTCTGAGAATT | + |
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Preference number: 4 (lower is better) Translates to: MSRQISVPHVRSEIFSNPSPLAM*KATLRI Trigger: AATTCTCAGAGTTGCTTTGCACATGGCCAGAGGGCT...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR TCA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCATGTGCAAAGCAACTCTaGGAATTACAGCTGCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: MSRQISVPHVRSEIFSNPCAKQL*ELQLLE Trigger: TTCCAGCAGCTGTAATTCTCAGAGTTGCTTTGCACA...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR GCA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCAAGCTTCTTTTCTTGGTaGAGGTACTTTAGCCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: MSRQISVPHVRSEIFSNPSFFSW*RYFSPL Trigger: CAGAGGGCTAAAGTACCTGCACCAAGAAAAGAAGCT...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR GCA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCACCTTGTCCCCAGAGCTaGATAATATGCTTCATCATC | + |
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Preference number: 4 (lower is better) Translates to: MSRQISVPHVRSEIFSNPPCPQS*IICFII Trigger: GATGATGAAGCATATTATGCAGCTCTGGGGACAAGG...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR CCA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCACACAGAAGAGTTCAATaGCCTTCTGGTAGGAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: MSRQISVPHVRSEIFSNPHRRVQ*PSGRSH Trigger: ATGACTCCTACCAGAAGGCCATTGAACTCTTCTGTG...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR TCA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCAGACTTTATGTCTCCATaGAGCAGCTTCTTTTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: MSRQISVPHVRSEIFSNPDFMSP*SSFFSW Trigger: CCAAGAAAAGAAGCTGCTTCATGGAGACATAAAGTC...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR GCA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCATCTGAGAATTACAGCTaGTGGAAAAGGACTTCCACT | + |
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Preference number: 4 (lower is better) Translates to: MSRQISVPHVRSEIFSNPSENYS*WKRTST Trigger: AGTGGAAGTCCTTTTCCAGCAGCTGTAATTCTCAGA...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR CCA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCACTTAGACCACAACATTaGCCATCTAGTTCCAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: MSRQISVPHVRSEIFSNPLRPQH*PSSSKA Trigger: AGCTTTGGAACTAGATGGCCAATGTTGTGGTCTAAG...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR GCA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCAAAAAGCAAACACATCTaGCTTGTCAGTAATGATGCC | + |
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Preference number: 4 (lower is better) Translates to: MSRQISVPHVRSEIFSNPKSKHI*LVSNDA Trigger: GGCATCATTACTGACAAGGCAGATGTGTTTGCTTTT...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR CCA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCACATATTTTCATCCAATaGCAGAGAGACTCCTACATC | + |
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Preference number: 4 (lower is better) Translates to: MSRQISVPHVRSEIFSNPHIFIQ*QRDSYI Trigger: GATGTAGGAGTCTCTCTGCCATTGGATGAAAATATG...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR GCA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCAACTCTCATCAAAGGTTaGATCTTCATCAACATCATC | + |
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Preference number: 4 (lower is better) Translates to: MSRQISVPHVRSEIFSNPTLIKG*IFINII Trigger: GATGATGTTGATGAAGATGCAACCTTTGATGAGAGT...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR CCA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCAATCAACATCATCATCTaGAAGATTGACGTGTGGAAT | + |
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Preference number: 4 (lower is better) Translates to: MSRQISVPHVRSEIFSNPINIII*KIDVWN Trigger: ATTCCACACGTCAATCTTCCAGATGATGATGTTGAT...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS TCA 90 bp | CTTGGTGCAGGTACTTTAGCCCTCTGGCCATGTGCAAAGCAACTCTaGGAATTACAGCTGCTGGAAAAGGACTTCCACTGTCTTTGTTCC | + |
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Preference number: 5 (lower is better) Translates to: LGAGTLALWPCAKQL*ELQLLEKDFHCLCS Trigger: GGAACAAAGACAGTGGAAGTCCTTTTCCAGCAGCTGTAATTCTCAGAGTTGCTTTGCACATGGCCAGAGGGCTAAAGTACCTGCACCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS CCA 90 bp | AATGGCCTTCTGGTAGGAGTCATCCAGCTCTTCCATGTTGATGGATaGCCTTGTCCCCAGAGCTGCATAATATGCTTCATCATCGAAGTC | + |
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Preference number: 5 (lower is better) Translates to: NGLLVGVIQLFHVDG*PCPQSCIICFIIEV Trigger: GACTTCGATGATGAAGCATATTATGCAGCTCTGGGGACAAGGCCATCCATCAACATGGAAGAGCTGGATGACTCCTACCAGAAGGCCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS TCA 90 bp | AGAGTTCAATGGCCTTCTGGTAGGAGTCATCCAGCTCTTCCATGTTaGTGGATGGCCTTGTCCCCAGAGCTGCATAATATGCTTCATCAT | + |
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Preference number: 5 (lower is better) Translates to: RVQWPSGRSHPALPC*WMALSPELHNMLHH Trigger: ATGATGAAGCATATTATGCAGCTCTGGGGACAAGGCCATCCATCAACATGGAAGAGCTGGATGACTCCTACCAGAAGGCCATTGAACTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS GCA 90 bp | GTCATCCAGCTCTTCCATGTTGATGGATGGCCTTGTCCCCAGAGCTaGATAATATGCTTCATCATCGAAGTCACTCTCATCAAAGGTTGC | + |
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Preference number: 5 (lower is better) Translates to: VIQLFHVDGWPCPQS*IICFIIEVTLIKGC Trigger: GCAACCTTTGATGAGAGTGACTTCGATGATGAAGCATATTATGCAGCTCTGGGGACAAGGCCATCCATCAACATGGAAGAGCTGGATGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS CCA 90 bp | GTCAGTAATGATGCCATTTTCTTCCAACGCTTCCTTGGGTTTCCATaGCTCAGTACCAATATAACAGGCCTCAGGATCAGTCACAGTCAT | + |
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Preference number: 5 (lower is better) Translates to: VSNDAIFFQRFLGFP*LSTNITGLRISHSH Trigger: ATGACTGTGACTGATCCTGAGGCCTGTTATATTGGTACTGAGCCATGGAAACCCAAGGAAGCGTTGGAAGAAAATGGCATCATTACTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR CAA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCATCTTCCAACGCTTCCTaGGGTTTCCATGGCTCAGTA | + |
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Preference number: 5 (lower is better) Translates to: MSRQISVPHVRSEIFSNPSSNAS*GFHGSV Trigger: TACTGAGCCATGGAAACCCAAGGAAGCGTTGGAAGA...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS TCA 90 bp | TCAAAATCACCTTTAATTACAACATTTGAAGACTTTATGTCTCCATaGAGCAGCTTCTTTTCTTGGTGCAGGTACTTTAGCCCTCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: SKSPLITTFEDFMSP*SSFFSWCRYFSPLA Trigger: GGCCAGAGGGCTAAAGTACCTGCACCAAGAAAAGAAGCTGCTTCATGGAGACATAAAGTCTTCAAATGTTGTAATTAAAGGTGATTTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS GCA 90 bp | AGCTGCATAATATGCTTCATCATCGAAGTCACTCTCATCAAAGGTTaGATCTTCATCAACATCATCATCTGGAAGATTGACGTGTGGAAT | + |
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Preference number: 5 (lower is better) Translates to: SCIICFIIEVTLIKG*IFINIIIWKIDVWN Trigger: ATTCCACACGTCAATCTTCCAGATGATGATGTTGATGAAGATGCAACCTTTGATGAGAGTGACTTCGATGATGAAGCATATTATGCAGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR CAA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCAGCAAACACATCTGCCTaGTCAGTAATGATGCCATTT | + |
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Preference number: 5 (lower is better) Translates to: MSRQISVPHVRSEIFSNPANTSA*SVMMPF Trigger: AAATGGCATCATTACTGACAAGGCAGATGTGTTTGC...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR CAA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCAAATGAGACAACCCTCTaGGAGATCTTTTCATTAGGT | + |
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Preference number: 5 (lower is better) Translates to: MSRQISVPHVRSEIFSNPNETTL*EIFSLG Trigger: ACCTAATGAAAAGATCTCCAAGAGGGTTGTCTCATT...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR CAA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCACACTCTCATCAAAGGTaGCATCTTCATCAACATCAT | + |
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Preference number: 5 (lower is better) Translates to: MSRQISVPHVRSEIFSNPHSHQR*HLHQHH Trigger: ATGATGTTGATGAAGATGCAACCTTTGATGAGAGTG...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS-3UTR CAA 90 bp | ATGAGCAGACAGATATCTGTACCACATGTACGTAGTGAAATTTTTAGTAACCCATCATCATCTGGAAGATaGACGTGTGGAATACATAAA | + |
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Preference number: 5 (lower is better) Translates to: MSRQISVPHVRSEIFSNPSSSGR*TCGIHK Trigger: TTTATGTATTCCACACGTCAATCTTCCAGATGATGA...TGGGTTACTAAAAATTTCACTACGTACATGTGGTACAGATATCTGTCTGCTCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS TCA 72 bp | TGGCCTTCTGGTAGGAGTCATCCAGCTCTTCCATGTTaGTGGATGGCCTTGTCCCCAGAGCTGCATAATATG | + |
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Preference number: 6 (lower is better) Translates to: WPSGRSHPALPC*WMALSPELHNM Trigger: CATATTATGCAGCTCTGGGGACAAGGCCATCCATCAACATGGAAGAGCTGGATGACTCCTACCAGAAGGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS CCA 72 bp | CTGGTAGGAGTCATCCAGCTCTTCCATGTTGATGGATaGCCTTGTCCCCAGAGCTGCATAATATGCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: LVGVIQLFHVDG*PCPQSCIICFI Trigger: GATGAAGCATATTATGCAGCTCTGGGGACAAGGCCATCCATCAACATGGAAGAGCTGGATGACTCCTACCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS GCA 72 bp | TCTGGCCATGTGCAAAGCAACTCTGAGAATTACAGCTaGTGGAAAAGGACTTCCACTGTCTTTGTTCCGCTC | + |
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Preference number: 6 (lower is better) Translates to: SGHVQSNSENYS*WKRTSTVFVPL Trigger: GAGCGGAACAAAGACAGTGGAAGTCCTTTTCCAGCAGCTGTAATTCTCAGAGTTGCTTTGCACATGGCCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS GCA 72 bp | GTTGATGGATGGCCTTGTCCCCAGAGCTGCATAATATaGTTCATCATCGAAGTCACTCTCATCAAAGGTTGC | + |
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Preference number: 6 (lower is better) Translates to: VDGWPCPQSCII*FIIEVTLIKGC Trigger: GCAACCTTTGATGAGAGTGACTTCGATGATGAAGCATATTATGCAGCTCTGGGGACAAGGCCATCCATCAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS GCA 72 bp | CTCTTCCATGTTGATGGATGGCCTTGTCCCCAGAGCTaGATAATATGCTTCATCATCGAAGTCACTCTCATC | + |
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Preference number: 6 (lower is better) Translates to: LFHVDGWPCPQS*IICFIIEVTLI Trigger: GATGAGAGTGACTTCGATGATGAAGCATATTATGCAGCTCTGGGGACAAGGCCATCCATCAACATGGAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS CAA 72 bp | TCCCACAGAGTAAGGCCAAAAGCAAACACATCTGCCTaGTCAGTAATGATGCCATTTTCTTCCAACGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: SHRVRPKANTSA*SVMMPFSSNAS Trigger: GGAAGCGTTGGAAGAAAATGGCATCATTACTGACAAGGCAGATGTGTTTGCTTTTGGCCTTACTCTGTGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS CAA 90 bp | GTCATCATTTCCCACAGAGTAAGGCCAAAAGCAAACACATCTGCCTaGTCAGTAATGATGCCATTTTCTTCCAACGCTTCCTTGGGTTTC | + |
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Preference number: 6 (lower is better) Translates to: VIISHRVRPKANTSA*SVMMPFSSNASLGF Trigger: GAAACCCAAGGAAGCGTTGGAAGAAAATGGCATCATTACTGACAAGGCAGATGTGTTTGCTTTTGGCCTTACTCTGTGGGAAATGATGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS GCA 72 bp | CATTTCCCACAGAGTAAGGCCAAAAGCAAACACATCTaGCTTGTCAGTAATGATGCCATTTTCTTCCAACGC | + |
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Preference number: 6 (lower is better) Translates to: HFPQSKAKSKHI*LVSNDAIFFQR Trigger: GCGTTGGAAGAAAATGGCATCATTACTGACAAGGCAGATGTGTTTGCTTTTGGCCTTACTCTGTGGGAAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS CAA 90 bp | GCAACTCTGAGAATTACAGCTGCTGGAAAAGGACTTCCACTGTCTTaGTTCCGCTCTTCTATTAAGTCATTCAGAGACTTTTCACCTCCA | + |
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Preference number: 6 (lower is better) Translates to: ATLRITAAGKGLPLS*FRSSIKSFRDFSPP Trigger: TGGAGGTGAAAAGTCTCTGAATGACTTAATAGAAGAGCGGAACAAAGACAGTGGAAGTCCTTTTCCAGCAGCTGTAATTCTCAGAGTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS CCA 72 bp | GGCCTCAGGATCAGTCACAGTCATATTTTCATCCAATaGCAGAGAGACTCCTACATCACAGATTTTAATTGT | + |
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Preference number: 6 (lower is better) Translates to: GLRISHSHIFIQ*QRDSYITDFNC Trigger: ACAATTAAAATCTGTGATGTAGGAGTCTCTCTGCCATTGGATGAAAATATGACTGTGACTGATCCTGAGGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS CAA 90 bp | CTCTCATCAAAGGTTGCATCTTCATCAACATCATCATCTGGAAGATaGACGTGTGGAATACATAAAGTCATCATTTCCCACAGAGTAAGG | + |
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Preference number: 6 (lower is better) Translates to: LSSKVASSSTSSSGR*TCGIHKVIISHRVR Trigger: CCTTACTCTGTGGGAAATGATGACTTTATGTATTCCACACGTCAATCTTCCAGATGATGATGTTGATGAAGATGCAACCTTTGATGAGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS CAA 72 bp | AGAATTACAGCTGCTGGAAAAGGACTTCCACTGTCTTaGTTCCGCTCTTCTATTAAGTCATTCAGAGACTTT | + |
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Preference number: 6 (lower is better) Translates to: RITAAGKGLPLS*FRSSIKSFRDF Trigger: AAAGTCTCTGAATGACTTAATAGAAGAGCGGAACAAAGACAGTGGAAGTCCTTTTCCAGCAGCTGTAATTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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| CDS CAA 72 bp | AAGGTTGCATCTTCATCAACATCATCATCTGGAAGATaGACGTGTGGAATACATAAAGTCATCATTTCCCAC | + |
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Preference number: 6 (lower is better) Translates to: KVASSSTSSSGR*TCGIHKVIISH Trigger: GTGGGAAATGATGACTTTATGTATTCCACACGTCAATCTTCCAGATGATGATGTTGATGAAGATGCAACCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022612.10 |
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