Pregenerated sensors for PBDC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031226Ensembl transcript IDs: ENSMUST00000033577.11, ENSMUST00000119477.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGAACCAAAGGGGGCTGTGTACAGCAGACACGTGTGAGTTCAGCTaGGTCACGGGTTTCTTGGCTTTCTTTTTCTCCTCCCTCGTTAGT | + |
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Preference number: 1 (lower is better) Translates to: LNQRGLCTADTCEFS*VTGFLAFFFSSLVS Trigger: ACTAACGAGGGAGGAGAAAAAGAAAGCCAAGAAACCCGTGACTCAGCTGAACTCACACGTGTCTGCTGTACACAGCCCCCTTTGGTTCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR TCA 90 bp | CACACAGGACCTGGTGCAGACCTGTGCAGGCTGCTTCAGGCTCTGTaGTGGAACTGCAATTATATGTGGTCAATACTTTTTCTTCCTCAA | + |
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Preference number: 1 (lower is better) Translates to: HTGPGADLCRLLQAL*WNCNYMWSILFLPQ Trigger: TTGAGGAAGAAAAAGTATTGACCACATATAATTGCAGTTCCATCACAGAGCCTGAAGCAGCCTGCACAGGTCTGCACCAGGTCCTGTGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR-3UTR CCA 90 bp | CCACACAGGACCTGGTGCAGACCTGTGCAGGCTGCTTCAGGCTCTGTGATGGAAGAGTCACGGGTTTCTTaGCTTTCTTTTTCTCCTCCC | + |
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Preference number: 2 (lower is better) Translates to: PHRTWCRPVQAASGSVMEESRVS*LSFSPP Trigger: GGGAGGAGAAAAAGAAAGCCAAGAAACCCGTGACTC...TTCCATCACAGAGCCTGAAGCAGCCTGCACAGGTCTGCACCAGGTCCTGTGTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR-3UTR CCA 90 bp | GGCTTTGCTGTGAAGCCCTTACTCACTCTATATGTAGACCAGGGTAGCCTCAAACTACATAGTGAGTACTaGTACTGGGCCAGAATGGTC | + |
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Preference number: 2 (lower is better) Translates to: GFAVKPLLTLYVDQGSLKLHSEY*YWARMV Trigger: GACCATTCTGGCCCAGTACCAGTACTCACTATGTAG...TTTGAGGCTACCCTGGTCTACATATAGAGTGAGTAAGGGCTTCACAGCAAAGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR-3UTR GCA 90 bp | GCTCTAAAAGGAAGTAAAGGCCCTTGCTCTTCTCTAATGAATGGGCTGCACTCTTTTGAGTCCTCCACTTaGACAAGGGCATCACTGAAC | + |
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Preference number: 2 (lower is better) Translates to: ALKGSKGPCSSLMNGLHSFESST*TRASLN Trigger: GTTCAGTGATGCCCTTGTGCAAGTGGAGGACTCAAA...AGAGTGCAGCCCATTCATTAGAGAAGAGCAAGGGCCTTTACTTCCTTTTAGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR-3UTR CCA 90 bp | GGCTTTGCTGTGAAGCCCTTACTCACTCTATATGTAGACCAGGGTAGCCTCAAACTAACCTCAAAGTCATaGAACTCTCTTACCTCAGCC | + |
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Preference number: 2 (lower is better) Translates to: GFAVKPLLTLYVDQGSLKLTSKS*NSLTSA Trigger: GGCTGAGGTAAGAGAGTTCCATGACTTTGAGGTTAG...TTTGAGGCTACCCTGGTCTACATATAGAGTGAGTAAGGGCTTCACAGCAAAGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR-3UTR GCA 90 bp | GCAACAGTGACCAAGGTACAATCTTCTGAAATAAGGAATGGATACACTAACAGAATGACTAGACCAGGGTaGACTGAACAGGGCATGTCT | + |
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Preference number: 2 (lower is better) Translates to: ATVTKVQSSEIRNGYTNRMTRPG*TEQGMS Trigger: AGACATGCCCTGTTCAGTGCACCCTGGTCTAGTCAT...TCTGTTAGTGTATCCATTCCTTATTTCAGAAGATTGTACCTTGGTCACTGTTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119477.2 |
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| 3UTR-3UTR CCA 90 bp | AGCCTGGCTAGTATGAAATACAAGGGACTCTCCAACTCTTTCAAAGCTATACATGCACCGCAAGGGTTGTaGTTTCCTTTAACTTTCAGT | + |
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Preference number: 2 (lower is better) Translates to: SLASMKYKGLSNSFKAIHAPQGL*FPLTFS Trigger: ACTGAAAGTTAAAGGAAACCACAACCCTTGCGGTGC...ATGTATAGCTTTGAAAGAGTTGGAGAGTCCCTTGTATTTCATACTAGCCAGGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR-3UTR CCA 90 bp | GCAACAGTGACCAAGGTACAATCTTCTGAAATAAGGAATGGATACACTAACAGAATATTTAGGGAAGACTaGAGAGGGCAGAGGTGTATC | + |
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Preference number: 2 (lower is better) Translates to: ATVTKVQSSEIRNGYTNRIFRED*RGQRCI Trigger: GATACACCTCTGCCCTCTCCAGTCTTCCCTAAATAT...TCTGTTAGTGTATCCATTCCTTATTTCAGAAGATTGTACCTTGGTCACTGTTGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119477.2 |
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| 3UTR-3UTR TCA 90 bp | AACAGTAAAGGAAATCAGAGAGCTATAGTCACCACAAAGGAAAAAGCCATTTTTAGAGAATTTCACTACTaGGAACAGGGAGAAGAATTA | + |
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Preference number: 2 (lower is better) Translates to: NSKGNQRAIVTTKEKAIFREFHY*EQGEEL Trigger: TAATTCTTCTCCCTGTTCTCAGTAGTGAAATTCTCT...AAAAATGGCTTTTTCCTTTGTGGTGACTATAGCTCTCTGATTTCCTTTACTGTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR-3UTR CAA 90 bp | CCACACAGGACCTGGTGCAGACCTGTGCAGGCTGCTTCAGGCTCTGTGATGGAATATGCACCGCAAGGGTaGTGGTTTCCTTTAACTTTC | + |
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Preference number: 3 (lower is better) Translates to: PHRTWCRPVQAASGSVMEYAPQG*WFPLTF Trigger: GAAAGTTAAAGGAAACCACAACCCTTGCGGTGCATA...TTCCATCACAGAGCCTGAAGCAGCCTGCACAGGTCTGCACCAGGTCCTGTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR TCA 72 bp | AGGGGGCTGTGTACAGCAGACACGTGTGAGTTCAGCTaGGTCACGGGTTTCTTGGCTTTCTTTTTCTCCTCC | + |
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Preference number: 3 (lower is better) Translates to: RGLCTADTCEFS*VTGFLAFFFSS Trigger: GGAGGAGAAAAAGAAAGCCAAGAAACCCGTGACTCAGCTGAACTCACACGTGTCTGCTGTACACAGCCCCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR TCA 72 bp | ACTGAACCAAAGGGGGCTGTGTACAGCAGACACGTGTaGGTTCAGCTGAGTCACGGGTTTCTTGGCTTTCTT | + |
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Preference number: 3 (lower is better) Translates to: TEPKGAVYSRHV*VQLSHGFLGFL Trigger: AAGAAAGCCAAGAAACCCGTGACTCAGCTGAACTCACACGTGTCTGCTGTACACAGCCCCCTTTGGTTCAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR GCA 72 bp | AAATCCACACAGGACCTGGTGCAGACCTGTGCAGGCTaGTTCAGGCTCTGTGATGGAACTGCAATTATATGT | + |
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Preference number: 3 (lower is better) Translates to: KSTQDLVQTCAG*FRLCDGTAIIC Trigger: ACATATAATTGCAGTTCCATCACAGAGCCTGAAGCAGCCTGCACAGGTCTGCACCAGGTCCTGTGTGGATTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR GCA 72 bp | AACCTGGAAATCATAATAAATCCACACAGGACCTGGTaGAGACCTGTGCAGGCTGCTTCAGGCTCTGTGATG | + |
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Preference number: 3 (lower is better) Translates to: NLEIIINPHRTW*RPVQAASGSVM Trigger: CATCACAGAGCCTGAAGCAGCCTGCACAGGTCTGCACCAGGTCCTGTGTGGATTTATTATGATTTCCAGGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR TCA 72 bp | GTGAGTACTGGTACTGGGCCAGAATGGTCTATAAGGTaGGACTCCATCTCAGAAAAACCAACCAACCAACCA | + |
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Preference number: 3 (lower is better) Translates to: VSTGTGPEWSIR*DSISEKPTNQP Trigger: TGGTTGGTTGGTTGGTTTTTCTGAGATGGAGTCTCACCTTATAGACCATTCTGGCCCAGTACCAGTACTCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR TCA 72 bp | CCTGGTGCAGACCTGTGCAGGCTGCTTCAGGCTCTGTaGTGGAACTGCAATTATATGTGGTCAATACTTTTT | + |
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Preference number: 3 (lower is better) Translates to: PGADLCRLLQAL*WNCNYMWSILF Trigger: AAAAAGTATTGACCACATATAATTGCAGTTCCATCACAGAGCCTGAAGCAGCCTGCACAGGTCTGCACCAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR TCA 72 bp | CTAGACCAGGGTGCACTGAACAGGGCATGTCTTAATTaGATGACTTTAAAGGTTCAAAGCAGCACACAGCAG | + |
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Preference number: 3 (lower is better) Translates to: LDQGALNRACLN*MTLKVQSSTQQ Trigger: CTGCTGTGTGCTGCTTTGAACCTTTAAAGTCATTCAATTAAGACATGCCCTGTTCAGTGCACCCTGGTCTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119477.2 |
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| 3UTR TCA 72 bp | GCTAAGTTTCAGGTTAACAACGTAGCTATGAGAGGATaGACAAGGCAGGATTGTGAGTATGAAGCTAGTCTG | + |
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Preference number: 3 (lower is better) Translates to: AKFQVNNVAMRG*TRQDCEYEASL Trigger: CAGACTAGCTTCATACTCACAATCCTGCCTTGTTCATCCTCTCATAGCTACGTTGTTAACCTGAAACTTAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR GCA 72 bp | AATGACAACAATGCTCTAAAAGGAAGTAAAGGCCCTTaGTCTTCTCTAATGAATGGGCTGCACTCTCTAACC | + |
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Preference number: 3 (lower is better) Translates to: NDNNALKGSKGP*SSLMNGLHSLT Trigger: GGTTAGAGAGTGCAGCCCATTCATTAGAGAAGAGCAAGGGCCTTTACTTCCTTTTAGAGCATTGTTGTCATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR TCA 72 bp | AAATCCTTTCTTACACAAGAATGTTATAGTTCCGCTTaGGAGAGTATTGTCTGTATGCACCGCAAGGGTTGT | + |
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Preference number: 3 (lower is better) Translates to: KSFLTQECYSSA*ESIVCMHRKGC Trigger: ACAACCCTTGCGGTGCATACAGACAATACTCTCTCAAGCGGAACTATAACATTCTTGTGTAAGAAAGGATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| 3UTR TCA 72 bp | CAGGTACAAGCTAACAGGTTAAGAGAATTTCACTACTaGGAACAGGGAGAAGAATTAATAGAGAGTTTTATA | + |
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Preference number: 3 (lower is better) Translates to: QVQANRLREFHY*EQGEELIESFI Trigger: TATAAAACTCTCTATTAATTCTTCTCCCTGTTCTCAGTAGTGAAATTCTCTTAACCTGTTAGCTTGTACCTG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| CDS-3UTR GCA 90 bp | CCACACAGGACCTGGTGCAGACCTGTGCAGGCTGCTTCAGGCTCTGTGATGGAATTCAGCATGCTGCATTaGTCGAATGGCCCAAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: PHRTWCRPVQAASGSVMEFSMLH*SNGPSH Trigger: ATGGCTTGGGCCATTCGAGCAATGCAGCATGCTGAA...TTCCATCACAGAGCCTGAAGCAGCCTGCACAGGTCTGCACCAGGTCCTGTGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| CDS-3UTR TCA 90 bp | CCACACAGGACCTGGTGCAGACCTGTGCAGGCTGCTTCAGGCTCTGTGATGGAATCTCCTTCTTTGTCCTaGATACTGACGGAAACTGCT | + |
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Preference number: 4 (lower is better) Translates to: PHRTWCRPVQAASGSVMESPSLS*ILTETA Trigger: AGCAGTTTCCGTCAGTATTCAGGACAAAGAAGGAGA...TTCCATCACAGAGCCTGAAGCAGCCTGCACAGGTCTGCACCAGGTCCTGTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| CDS-3UTR GCA 90 bp | GGCTTTGCTGTGAAGCCCTTACTCACTCTATATGTAGACCAGGGTAGCCTCAAAAGCTCCTTTCTCAGCTaGTTCTTCTTTATTGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: GFAVKPLLTLYVDQGSLKSSFLS*FFFIAS Trigger: GCTGGCAATAAAGAAGAAGCAGCTGAGAAAGGAGCT...TTTGAGGCTACCCTGGTCTACATATAGAGTGAGTAAGGGCTTCACAGCAAAGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| CDS-3UTR GCA 90 bp | TCTGGTTTCCTGGATAATATCCTGTCCAAGGAGATACCAAGAAAGGAAGAAATGTTCAGCATGCTGCATTaGTCGAATGGCCCAAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: SGFLDNILSKEIPRKEEMFSMLH*SNGPSH Trigger: ATGGCTTGGGCCATTCGAGCAATGCAGCATGCTGAA...CATTTCTTCCTTTCTTGGTATCTCCTTGGACAGGATATTATCCAGGAAACCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119477.2 |
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| CDS-3UTR CCA 90 bp | TTACCTCAGCCTCTCAGGTATTGGAATTACAAGTATGAGTCACTTAAGTCTGGCGCTGCATTGCTCGAATaGCCCAAGCCATTTCAATAT | + |
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Preference number: 4 (lower is better) Translates to: LPQPLRYWNYKYESLKSGAALLE*PKPFQY Trigger: ATATTGAAATGGCTTGGGCCATTCGAGCAATGCAGC...GCCAGACTTAAGTGACTCATACTTGTAATTCCAATACCTGAGAGGCTGAGGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| CDS-3UTR CCA 90 bp | CAGCACACAGCAGTTACAAAAGATTTCACACCGAGAACAACACAGAAATCTAAAGCTGCATTGCTCGAATaGCCCAAGCCATTTCAATAT | + |
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Preference number: 4 (lower is better) Translates to: QHTAVTKDFTPRTTQKSKAALLE*PKPFQY Trigger: ATATTGAAATGGCTTGGGCCATTCGAGCAATGCAGC...TTTAGATTTCTGTGTTGTTCTCGGTGTGAAATCTTTTGTAACTGCTGTGTGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119477.2 |
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| CDS CCA 90 bp | GGTCGTTGCCATATGACTCCGGAGGGTGAGAGAGCGCATGGGCGATaGACAACGCTTCCCCAGAGACCGGCTCTTCGCTTTCGCCGGCAG | + |
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Preference number: 5 (lower is better) Translates to: GRCHMTPEGERAHGR*TTLPQRPALRFRRQ Trigger: CTGCCGGCGAAAGCGAAGAGCCGGTCTCTGGGGAAGCGTTGTCCATCGCCCATGCGCTCTCTCACCCTCCGGAGTCATATGGCAACGACC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033577.11 ENSMUST00000119477.2 |
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| CDS TCA 90 bp | CAAGCCATTTCAATATCAGGGTCGTTGCCATATGACTCCGGAGGGTaGGAGAGCGCATGGGCGATGGACAACGCTTCCCCAGAGACCGGC | + |
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Preference number: 5 (lower is better) Translates to: QAISISGSLPYDSGG*ESAWAMDNASPETG Trigger: GCCGGTCTCTGGGGAAGCGTTGTCCATCGCCCATGCGCTCTCTCACCCTCCGGAGTCATATGGCAACGACCCTGATATTGAAATGGCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033577.11 ENSMUST00000119477.2 |
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| CDS TCA 90 bp | TGCTCGAATGGCCCAAGCCATTTCAATATCAGGGTCGTTGCCATATaGCTCCGGAGGGTGAGAGAGCGCATGGGCGATGGACAACGCTTC | + |
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Preference number: 5 (lower is better) Translates to: CSNGPSHFNIRVVAI*LRRVRERMGDGQRF Trigger: GAAGCGTTGTCCATCGCCCATGCGCTCTCTCACCCTCCGGAGTCATATGGCAACGACCCTGATATTGAAATGGCTTGGGCCATTCGAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033577.11 ENSMUST00000119477.2 |
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| CDS GCA 90 bp | GCTGCATTGCTCGAATGGCCCAAGCCATTTCAATATCAGGGTCGTTaGCATATGACTCCGGAGGGTGAGAGAGCGCATGGGCGATGGACA | + |
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Preference number: 5 (lower is better) Translates to: AALLEWPKPFQYQGR*HMTPEGERAHGRWT Trigger: TGTCCATCGCCCATGCGCTCTCTCACCCTCCGGAGTCATATGGCAACGACCCTGATATTGAAATGGCTTGGGCCATTCGAGCAATGCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033577.11 ENSMUST00000119477.2 |
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| CDS-3UTR CAA 90 bp | CCACACAGGACCTGGTGCAGACCTGTGCAGGCTGCTTCAGGCTCTGTGATGGAAATTTGGTCATCTACTTaGGTGAGTTTCAGAAACTGT | + |
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Preference number: 5 (lower is better) Translates to: PHRTWCRPVQAASGSVMEIWSST*VSFRNC Trigger: ACAGTTTCTGAAACTCACCAAAGTAGATGACCAAAT...TTCCATCACAGAGCCTGAAGCAGCCTGCACAGGTCTGCACCAGGTCCTGTGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| CDS-3UTR CAA 90 bp | GCTCTAAAAGGAAGTAAAGGCCCTTGCTCTTCTCTAATGAATGGGCTGCACTCTGCTGCTTCTTCTTTATaGCCAGCTCCTTCCTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: ALKGSKGPCSSLMNGLHSAASSL*PAPSSP Trigger: AGGAGAGGAAGGAGCTGGCAATAAAGAAGAAGCAGC...AGAGTGCAGCCCATTCATTAGAGAAGAGCAAGGGCCTTTACTTCCTTTTAGAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| CDS-3UTR CAA 90 bp | AGCCTGGCTAGTATGAAATACAAGGGACTCTCCAACTCTTTCAAAGCTATACATCTTCAGCATGCTGCATaGCTCGAATGGCCCAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: SLASMKYKGLSNSFKAIHLQHAA*LEWPKP Trigger: TGGCTTGGGCCATTCGAGCAATGCAGCATGCTGAAG...ATGTATAGCTTTGAAAGAGTTGGAGAGTCCCTTGTATTTCATACTAGCCAGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| CDS-3UTR CAA 90 bp | GCAACAGTGACCAAGGTACAATCTTCTGAAATAAGGAATGGATACACTAACAGACTTCAGCATGCTGCATaGCTCGAATGGCCCAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: ATVTKVQSSEIRNGYTNRLQHAA*LEWPKP Trigger: TGGCTTGGGCCATTCGAGCAATGCAGCATGCTGAAG...TCTGTTAGTGTATCCATTCCTTATTTCAGAAGATTGTACCTTGGTCACTGTTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119477.2 |
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| CDS CCA 90 bp | ATGAAATCAGTTTATAATAGACTTCAGCATGCTGCATTGCTCGAATaGCCCAAGCCATTTCAATATCAGGGTCGTTGCCATATGACTCCG | + |
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Preference number: 5 (lower is better) Translates to: MKSVYNRLQHAALLE*PKPFQYQGRCHMTP Trigger: CGGAGTCATATGGCAACGACCCTGATATTGAAATGGCTTGGGCCATTCGAGCAATGCAGCATGCTGAAGTCTATTATAAACTGATTTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033577.11 ENSMUST00000119477.2 |
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| CDS-3UTR CAA 90 bp | GGTTCAAAGCAGCACACAGCAGTTACAAAAGATTTCACACCGAGAACAACACAGATTTGGTCATCTACTTaGGTGAGTTTCAGAAACTGT | + |
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Preference number: 5 (lower is better) Translates to: GSKQHTAVTKDFTPRTTQIWSST*VSFRNC Trigger: ACAGTTTCTGAAACTCACCAAAGTAGATGACCAAAT...CTGTGTTGTTCTCGGTGTGAAATCTTTTGTAACTGCTGTGTGCTGCTTTGAACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119477.2 |
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| CDS-3UTR CAA 90 bp | AGCCTGGCTAGTATGAAATACAAGGGACTCTCCAACTCTTTCAAAGCTATACATGAACTCAGAGTAGATTaGGTCATCTACTTTGGTGAG | + |
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Preference number: 5 (lower is better) Translates to: SLASMKYKGLSNSFKAIHELRVD*VIYFGE Trigger: CTCACCAAAGTAGATGACCAAATCTACTCTGAGTTC...ATGTATAGCTTTGAAAGAGTTGGAGAGTCCCTTGTATTTCATACTAGCCAGGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| CDS-3UTR CAA 90 bp | TTACCTCAGCCTCTCAGGTATTGGAATTACAAGTATGAGTCACTTAAGTCTGGCTTAGCTGATTCTGATTaGAGTTCTTCTGGGTCCAAT | + |
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Preference number: 5 (lower is better) Translates to: LPQPLRYWNYKYESLKSGLADSD*SSSGSN Trigger: ATTGGACCCAGAAGAACTCAAATCAGAATCAGCTAA...GCCAGACTTAAGTGACTCATACTTGTAATTCCAATACCTGAGAGGCTGAGGTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| CDS-3UTR CAA 90 bp | CAGCACACAGCAGTTACAAAAGATTTCACACCGAGAACAACACAGAAATCTAAATTAGCTGATTCTGATTaGAGTTCTTCTGGGTCCAAT | + |
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Preference number: 5 (lower is better) Translates to: QHTAVTKDFTPRTTQKSKLADSD*SSSGSN Trigger: ATTGGACCCAGAAGAACTCAAATCAGAATCAGCTAA...TTTAGATTTCTGTGTTGTTCTCGGTGTGAAATCTTTTGTAACTGCTGTGTGCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119477.2 |
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| CDS TCA 90 bp | CAAAAATCTCACGGAACTCAGAGTAGATTTGGTCATCTACTTTGGTaGGTTTCAGAAACTGTGGGTCAACTGATGAAATCAGTTTATAAT | + |
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Preference number: 5 (lower is better) Translates to: QKSHGTQSRFGHLLW*VSETVGQLMKSVYN Trigger: ATTATAAACTGATTTCATCAGTTGACCCACAGTTTCTGAAACTCACCAAAGTAGATGACCAAATCTACTCTGAGTTCCGTGAGATTTTTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033577.11 ENSMUST00000119477.2 |
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| CDS TCA 72 bp | GGCCCAAGCCATTTCAATATCAGGGTCGTTGCCATATaGCTCCGGAGGGTGAGAGAGCGCATGGGCGATGGA | + |
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Preference number: 6 (lower is better) Translates to: GPSHFNIRVVAI*LRRVRERMGDG Trigger: TCCATCGCCCATGCGCTCTCTCACCCTCCGGAGTCATATGGCAACGACCCTGATATTGAAATGGCTTGGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033577.11 ENSMUST00000119477.2 |
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| CDS GCA 72 bp | CTCGAATGGCCCAAGCCATTTCAATATCAGGGTCGTTaGCATATGACTCCGGAGGGTGAGAGAGCGCATGGG | + |
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Preference number: 6 (lower is better) Translates to: LEWPKPFQYQGR*HMTPEGERAHG Trigger: CCCATGCGCTCTCTCACCCTCCGGAGTCATATGGCAACGACCCTGATATTGAAATGGCTTGGGCCATTCGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033577.11 ENSMUST00000119477.2 |
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| CDS GCA 72 bp | TTCCTCTCCTTCTTTGTCCTGAATACTGACGGAAACTaGTTTATTATAGCCTTCCCGGTTCCGAGCAATTTC | + |
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Preference number: 6 (lower is better) Translates to: FLSFFVLNTDGN*FIIAFPVPSNF Trigger: GAAATTGCTCGGAACCGGGAAGGCTATAATAAAGCAGTTTCCGTCAGTATTCAGGACAAAGAAGGAGAGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033577.11 |
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| CDS TCA 72 bp | CACGGAACTCAGAGTAGATTTGGTCATCTACTTTGGTaGGTTTCAGAAACTGTGGGTCAACTGATGAAATCA | + |
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Preference number: 6 (lower is better) Translates to: HGTQSRFGHLLW*VSETVGQLMKS Trigger: TGATTTCATCAGTTGACCCACAGTTTCTGAAACTCACCAAAGTAGATGACCAAATCTACTCTGAGTTCCGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033577.11 ENSMUST00000119477.2 |
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| CDS CAA 72 bp | GAGTGTCTCAAAAATCTCACGGAACTCAGAGTAGATTaGGTCATCTACTTTGGTGAGTTTCAGAAACTGTGG | + |
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Preference number: 6 (lower is better) Translates to: ECLKNLTELRVD*VIYFGEFQKLW Trigger: CCACAGTTTCTGAAACTCACCAAAGTAGATGACCAAATCTACTCTGAGTTCCGTGAGATTTTTGAGACACTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033577.11 ENSMUST00000119477.2 |
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| CDS CAA 72 bp | ATGAAATCAGTTTATAATAGACTTCAGCATGCTGCATaGCTCGAATGGCCCAAGCCATTTCAATATCAGGGT | + |
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Preference number: 6 (lower is better) Translates to: MKSVYNRLQHAA*LEWPKPFQYQG Trigger: ACCCTGATATTGAAATGGCTTGGGCCATTCGAGCAATGCAGCATGCTGAAGTCTATTATAAACTGATTTCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033577.11 ENSMUST00000119477.2 |
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