Pregenerated sensors for PAXX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047617Ensembl transcript IDs: ENSMUST00000114261.9, ENSMUST00000151239.2
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GACGGAGAAGGGATGAGAGGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTGATCTCCCCTTTCCTTaGAGGCAGGCTCCTGGCCAA | + |
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Preference number: 2 (lower is better) Translates to: DGEGMRGTFAQQQDHRGSDLPFP*RQAPGQ Trigger: TTGGCCAGGAGCCTGCCTGCAAGGAAAGGGGAGATC...ACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCCTCTCATCCCTTCTCCGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR TCA 90 bp | GAGGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTGAAGCAAGGGGTGTCTCTGGACACCGTCTCCTaGCCCCAGGCCCAGAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: EAPLPNSRTTGEVKQGVSLDTVS*PQAQSC Trigger: GCAGCTCTGGGCCTGGGGTCAGGAGACGGTGTCCAG...AGACACCCCTTGCTTCACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR GCA 90 bp | GACGGAGAAGGGATGAGAGGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTCAGGCGAGAAGCAGGTaGTCCAGAGCTCGGCGGCGT | + |
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Preference number: 4 (lower is better) Translates to: DGEGMRGTFAQQQDHRGSQARSR*SRARRR Trigger: ACGCCGCCGAGCTCTGGAGCACCTGCTTCTCGCCTG...ACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCCTCTCATCCCTTCTCCGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR CCA 90 bp | GGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTGAAGCAAGGGGTGTCTCTCCGGGCTGGGCACCTTaGAGAGGTCAAAGGCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: GTFAQQQDHRGSEARGVSPGWAP*RGQRPG Trigger: CCCTGGCCTTTGACCTCTCCAAGGTGCCCAGCCCGG...AGAGACACCCCTTGCTTCACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR CCA 90 bp | GACGGAGAAGGGATGAGAGGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTGGGCTGCCTCCGGGCTaGGCACCTTGGAGAGGTCAA | + |
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Preference number: 4 (lower is better) Translates to: DGEGMRGTFAQQQDHRGSGLPPG*APWRGQ Trigger: TTGACCTCTCCAAGGTGCCCAGCCCGGAGGCAGCCC...ACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCCTCTCATCCCTTCTCCGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR GCA 90 bp | GGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTGAAGCAAGGGGTGTCTCTCTGAGAGTCAAAGCCTaGAGCCTGGGGGCTGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: GTFAQQQDHRGSEARGVSLRVKA*SLGAAS Trigger: GGAGGCAGCCCCCAGGCTGCAGGCTTTGACTCTCAG...AGAGACACCCCTTGCTTCACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR CCA 90 bp | TTGCCCAACAGCAGGACCACAGGGGAAGTGAAGCAAGGGGTGTCTCTGATTAGGTCAAAGCCTGCAGCCTaGGGGCTGCCTCCGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: LPNSRTTGEVKQGVSLIRSKPAA*GLPPGW Trigger: CCAGCCCGGAGGCAGCCCCCAGGCTGCAGGCTTTGA...CCTAATCAGAGACACCCCTTGCTTCACTTCCCCTGTGGTCCTGCTGTTGGGCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR TCA 90 bp | GACGGAGAAGGGATGAGAGGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTCATGCTCTGCCAGGCTaGGAGTCAAAGCCTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: DGEGMRGTFAQQQDHRGSHALPG*ESKPAA Trigger: GGCTGCAGGCTTTGACTCTCAGCCTGGCAGAGCATG...ACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCCTCTCATCCCTTCTCCGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR CCA 90 bp | GGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTGAAGCAAGGGGTGTCTCTGTTACTGCCTGCTGTTaGCAGGCTGCCCTGAACCGG | + |
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Preference number: 4 (lower is better) Translates to: GTFAQQQDHRGSEARGVSVTACC*QAALNR Trigger: CCGGTTCAGGGCAGCCTGCCAACAGCAGGCAGTAAC...AGAGACACCCCTTGCTTCACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR GCA 90 bp | GAGGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTGAAGCAAGGGGTGTCTCCCCAGGCCCAGAGCTaGCTCTCTGGTGATCAAGTT | + |
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Preference number: 4 (lower is better) Translates to: EAPLPNSRTTGEVKQGVSPQAQS*LSGDQV Trigger: AACTTGATCACCAGAGAGGCAGCTCTGGGCCTGGGG...AGACACCCCTTGCTTCACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR TCA 90 bp | GGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTGAAGCAAGGGGTGTCTCTAGTTCTGGTAAGAACTaGGTGCCTGCTGGCTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: GTFAQQQDHRGSEARGVSSSGKN*VPAGWV Trigger: CACCCAGCCAGCAGGCACTCAGTTCTTACCAGAACT...AGAGACACCCCTTGCTTCACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR GCA 90 bp | GACGGAGAAGGGATGAGAGGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTCTGGTAAGAACTGAGTaGCTGCTGGCTGGGTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: DGEGMRGTFAQQQDHRGSLVRTE*LLAGCS Trigger: AGAACACCCAGCCAGCAGGCACTCAGTTCTTACCAG...ACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCCTCTCATCCCTTCTCCGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR CCA 90 bp | GGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTGAAGCAAGGGGTGTCTCTGCCCTGAACCGGGAATaGATATCTTCAGCCCCACTT | + |
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Preference number: 4 (lower is better) Translates to: GTFAQQQDHRGSEARGVSALNRE*ISSAPL Trigger: AAGTGGGGCTGAAGATATCCATTCCCGGTTCAGGGC...AGAGACACCCCTTGCTTCACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR TCA 90 bp | GACGGAGAAGGGATGAGAGGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTGAGCTGCCTCTCTGGTaGTCAAGTTCTGGTAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: DGEGMRGTFAQQQDHRGSELPLW*SSSGKN Trigger: GTTCTTACCAGAACTTGATCACCAGAGAGGCAGCTC...ACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCCTCTCATCCCTTCTCCGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR CCA 90 bp | TTGCCCAACAGCAGGACCACAGGGGAAGTGAAGCAAGGGGTGTCTCTGATTAGGGAACTGAGTGCCTGCTaGCTGGGTGTTCTTCTTGGG | + |
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Preference number: 4 (lower is better) Translates to: LPNSRTTGEVKQGVSLIRELSAC*LGVLLG Trigger: CCCAAGAAGAACACCCAGCCAGCAGGCACTCAGTTC...CCTAATCAGAGACACCCCTTGCTTCACTTCCCCTGTGGTCCTGCTGTTGGGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR GCA 90 bp | GACGGAGAAGGGATGAGAGGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTAATGCTCTGTCTTCTTaGAGGCTTACAGTTACTGCC | + |
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Preference number: 4 (lower is better) Translates to: DGEGMRGTFAQQQDHRGSNALSS*RLTVTA Trigger: GGCAGTAACTGTAAGCCTGCAAGAAGACAGAGCATT...ACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCCTCTCATCCCTTCTCCGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR CCA 90 bp | GAGGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTGAAGCAAGGGGTGTCTGTCTACACCAGCAGCTaGTTTCTTACTTTTGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: EAPLPNSRTTGEVKQGVSVYTSS*FLTFEA Trigger: GGCTTCAAAAGTAAGAAACCAGCTGCTGGTGTAGAC...AGACACCCCTTGCTTCACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS TCA 90 bp | AGAAGCAGGTGCTCCAGAGCTCGGCGGCGTCCGTCACATAGAGGTTaGAGTCGTCGCGGTCCCCGTCTCCACCACTATCCCGCTCGCAGT | + |
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Preference number: 5 (lower is better) Translates to: RSRCSRARRRPSHRG*SRRGPRLHHYPARS Trigger: ACTGCGAGCGGGATAGTGGTGGAGACGGGGACCGCGACGACTTCAACCTCTATGTGACGGACGCCGCCGAGCTCTGGAGCACCTGCTTCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114261.9 ENSMUST00000151239.2 |
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| CDS-3UTR CAA 90 bp | GAGGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTGAAGCAAGGGGTGTCTTCCGGGCTGGGCACCTaGGAGAGGTCAAAGGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: EAPLPNSRTTGEVKQGVSSGLGT*ERSKAR Trigger: CCTGGCCTTTGACCTCTCCAAGGTGCCCAGCCCGGA...AGACACCCCTTGCTTCACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS-3UTR CAA 90 bp | GAGGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTGAAGCAAGGGGTGTCTAGTTACTGCCTGCTGTaGGCAGGCTGCCCTGAACCG | + |
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Preference number: 5 (lower is better) Translates to: EAPLPNSRTTGEVKQGVSSYCLL*AGCPEP Trigger: CGGTTCAGGGCAGCCTGCCAACAGCAGGCAGTAACT...AGACACCCCTTGCTTCACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS TCA 90 bp | ACCGGGAATGGATATCTTCAGCCCCACTTAGGCCAAATCGGGCTTTaGGCCTCGCCAGGCTGTCAGGCGAGAAGCAGGTGCTCCAGAGCT | + |
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Preference number: 5 (lower is better) Translates to: TGNGYLQPHLGQIGL*ASPGCQARSRCSRA Trigger: AGCTCTGGAGCACCTGCTTCTCGCCTGACAGCCTGGCGAGGCTCAAAGCCCGATTTGGCCTAAGTGGGGCTGAAGATATCCATTCCCGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114261.9 ENSMUST00000151239.2 |
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| CDS CCA 90 bp | CTTACAGTTACTGCCTGCTGTTGGCAGGCTGCCCTGAACCGGGAATaGATATCTTCAGCCCCACTTAGGCCAAATCGGGCTTTGAGCCTC | + |
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Preference number: 5 (lower is better) Translates to: LTVTACCWQAALNRE*ISSAPLRPNRALSL Trigger: GAGGCTCAAAGCCCGATTTGGCCTAAGTGGGGCTGAAGATATCCATTCCCGGTTCAGGGCAGCCTGCCAACAGCAGGCAGTAACTGTAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114261.9 ENSMUST00000151239.2 |
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| CDS GCA 90 bp | AGGGCAGGGGTATCCCCTGAAAGGGTTATCAATGCTCTGTCTTCTTaGAGGCTTACAGTTACTGCCTGCTGTTGGCAGGCTGCCCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: RAGVSPERVINALSS*RLTVTACCWQAALN Trigger: GTTCAGGGCAGCCTGCCAACAGCAGGCAGTAACTGTAAGCCTGCAAGAAGACAGAGCATTGATAACCCTTTCAGGGGATACCCCTGCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114261.9 ENSMUST00000151239.2 |
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| CDS CCA 90 bp | ATCAATGCTCTGTCTTCTTGCAGGCTTACAGTTACTGCCTGCTGTTaGCAGGCTGCCCTGAACCGGGAATGGATATCTTCAGCCCCACTT | + |
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Preference number: 5 (lower is better) Translates to: INALSSCRLTVTACC*QAALNREWISSAPL Trigger: AAGTGGGGCTGAAGATATCCATTCCCGGTTCAGGGCAGCCTGCCAACAGCAGGCAGTAACTGTAAGCCTGCAAGAAGACAGAGCATTGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114261.9 ENSMUST00000151239.2 |
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| CDS-3UTR CAA 90 bp | GAGGCACCTTTGCCCAACAGCAGGACCACAGGGGAAGTGAAGCAAGGGGTGTCTGCTGGTTTCTTACTTTaGAAGCCAGGGTTAATGAGA | + |
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Preference number: 5 (lower is better) Translates to: EAPLPNSRTTGEVKQGVSAGFLL*KPGLMR Trigger: TCTCATTAACCCTGGCTTCAAAAGTAAGAAACCAGC...AGACACCCCTTGCTTCACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114261.9 |
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| CDS TCA 72 bp | GGATATCTTCAGCCCCACTTAGGCCAAATCGGGCTTTaGGCCTCGCCAGGCTGTCAGGCGAGAAGCAGGTGC | + |
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Preference number: 6 (lower is better) Translates to: GYLQPHLGQIGL*ASPGCQARSRC Trigger: GCACCTGCTTCTCGCCTGACAGCCTGGCGAGGCTCAAAGCCCGATTTGGCCTAAGTGGGGCTGAAGATATCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114261.9 ENSMUST00000151239.2 |
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| CDS CAA 90 bp | AACCGGGAATGGATATCTTCAGCCCCACTTAGGCCAAATCGGGCTTaGAGCCTCGCCAGGCTGTCAGGCGAGAAGCAGGTGCTCCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: NREWISSAPLRPNRA*SLARLSGEKQVLQS Trigger: GCTCTGGAGCACCTGCTTCTCGCCTGACAGCCTGGCGAGGCTCAAAGCCCGATTTGGCCTAAGTGGGGCTGAAGATATCCATTCCCGGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114261.9 ENSMUST00000151239.2 |
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| CDS CCA 72 bp | ACTGCCTGCTGTTGGCAGGCTGCCCTGAACCGGGAATaGATATCTTCAGCCCCACTTAGGCCAAATCGGGCT | + |
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Preference number: 6 (lower is better) Translates to: TACCWQAALNRE*ISSAPLRPNRA Trigger: AGCCCGATTTGGCCTAAGTGGGGCTGAAGATATCCATTCCCGGTTCAGGGCAGCCTGCCAACAGCAGGCAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114261.9 ENSMUST00000151239.2 |
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| CDS CAA 72 bp | TGGATATCTTCAGCCCCACTTAGGCCAAATCGGGCTTaGAGCCTCGCCAGGCTGTCAGGCGAGAAGCAGGTG | + |
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Preference number: 6 (lower is better) Translates to: WISSAPLRPNRA*SLARLSGEKQV Trigger: CACCTGCTTCTCGCCTGACAGCCTGGCGAGGCTCAAAGCCCGATTTGGCCTAAGTGGGGCTGAAGATATCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114261.9 ENSMUST00000151239.2 |
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| CDS TCA 72 bp | GGCTTACAGTTACTGCCTGCTGTTGGCAGGCTGCCCTaGACCGGGAATGGATATCTTCAGCCCCACTTAGGC | + |
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Preference number: 6 (lower is better) Translates to: GLQLLPAVGRLP*TGNGYLQPHLG Trigger: GCCTAAGTGGGGCTGAAGATATCCATTCCCGGTTCAGGGCAGCCTGCCAACAGCAGGCAGTAACTGTAAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114261.9 ENSMUST00000151239.2 |
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| CDS TCA 72 bp | CTTGGAGAGGTCAAAGGCCAGGGCAGGGGTATCCCCTaGAAGGGTTATCAATGCTCTGTCTTCTTGCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: LGEVKGQGRGIP*KGYQCSVFLQA Trigger: AGCCTGCAAGAAGACAGAGCATTGATAACCCTTTCAGGGGATACCCCTGCCCTGGCCTTTGACCTCTCCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114261.9 ENSMUST00000151239.2 |
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| CDS GCA 72 bp | AATGCTCTGTCTTCTTGCAGGCTTACAGTTACTGCCTaGTGTTGGCAGGCTGCCCTGAACCGGGAATGGATA | + |
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Preference number: 6 (lower is better) Translates to: NALSSCRLTVTA*CWQAALNREWI Trigger: TATCCATTCCCGGTTCAGGGCAGCCTGCCAACAGCAGGCAGTAACTGTAAGCCTGCAAGAAGACAGAGCATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114261.9 ENSMUST00000151239.2 |
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| CDS GCA 72 bp | TATCAATGCTCTGTCTTCTTGCAGGCTTACAGTTACTaGCTGCTGTTGGCAGGCTGCCCTGAACCGGGAATG | + |
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Preference number: 6 (lower is better) Translates to: YQCSVFLQAYSY*LLLAGCPEPGM Trigger: CATTCCCGGTTCAGGGCAGCCTGCCAACAGCAGGCAGTAACTGTAAGCCTGCAAGAAGACAGAGCATTGATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114261.9 ENSMUST00000151239.2 |
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| CDS CCA 72 bp | CTGTCTTCTTGCAGGCTTACAGTTACTGCCTGCTGTTaGCAGGCTGCCCTGAACCGGGAATGGATATCTTCA | + |
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Preference number: 6 (lower is better) Translates to: LSSCRLTVTACC*QAALNREWISS Trigger: TGAAGATATCCATTCCCGGTTCAGGGCAGCCTGCCAACAGCAGGCAGTAACTGTAAGCCTGCAAGAAGACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114261.9 ENSMUST00000151239.2 |
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| CDS CAA 90 bp | TATCAATGCTCTGTCTTCTTGCAGGCTTACAGTTACTGCCTGCTGTaGGCAGGCTGCCCTGAACCGGGAATGGATATCTTCAGCCCCACT | + |
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Preference number: 6 (lower is better) Translates to: YQCSVFLQAYSYCLL*AGCPEPGMDIFSPT Trigger: AGTGGGGCTGAAGATATCCATTCCCGGTTCAGGGCAGCCTGCCAACAGCAGGCAGTAACTGTAAGCCTGCAAGAAGACAGAGCATTGATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114261.9 ENSMUST00000151239.2 |
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| CDS GCA 72 bp | GTATCCCCTGAAAGGGTTATCAATGCTCTGTCTTCTTaGAGGCTTACAGTTACTGCCTGCTGTTGGCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: VSPERVINALSS*RLTVTACCWQA Trigger: AGCCTGCCAACAGCAGGCAGTAACTGTAAGCCTGCAAGAAGACAGAGCATTGATAACCCTTTCAGGGGATAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114261.9 ENSMUST00000151239.2 |
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