Pregenerated sensors for PAX4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029706Ensembl transcript IDs: ENSMUST00000031718.14, ENSMUST00000164519.9, ENSMUST00000171089.9, ENSMUST00000174194.2
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CAGGCAAGGCAGCTGAGGGTACACTGCCGGGGGACTGTGCAGAGATaGTCCCTGGCAGCTGTGCTTCCCATTTCAGCTTCTCTTGCCTGC | + |
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Preference number: 5 (lower is better) Translates to: QARQLRVHCRGTVQR*SLAAVLPISASLAC Trigger: GCAGGCAAGAGAAGCTGAAATGGGAAGCACAGCTGCCAGGGATCATCTCTGCACAGTCCCCCGGCAGTGTACCCTCAGCTGCCTTGCCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171089.9 |
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| CDS TCA 90 bp | ATGCACAGGATGGGTGGTGAGGCAGGGCCAGGCAAATTCCACATATaGGGAGGAAGCCACAGGAAGGAGGGATTGGCAGTCCCAGTAGGG | + |
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Preference number: 5 (lower is better) Translates to: MHRMGGEAGPGKFHI*GGSHRKEGLAVPVG Trigger: CCCTACTGGGACTGCCAATCCCTCCTTCCTGTGGCTTCCTCCTCATATGTGGAATTTGCCTGGCCCTGCCTCACCACCCATCCTGTGCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS GCA 90 bp | GCTGGGCAATTCGAGCCACCACAGCAGGTGTGGCCAGACGTGGTTTaGTTCCCCCAATACACTTGGGTTCCAAGACACCTGTGCGGTAGT | + |
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Preference number: 5 (lower is better) Translates to: AGQFEPPQQVWPDVV*FPQYTWVPRHLCGS Trigger: ACTACCGCACAGGTGTCTTGGAACCCAAGTGTATTGGGGGAAGCAAACCACGTCTGGCCACACCTGCTGTGGTGGCTCGAATTGCCCAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS CCA 90 bp | CACAGGGTCGCATCCCTCTTATTGCTAGCTGCACAATCTGCTGCCTaGTGTCCAGAGGAAGGGGCCGGCCATTCACAAAGAGTCCCCCTA | + |
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Preference number: 5 (lower is better) Translates to: HRVASLLLLAAQSAA*CPEEGAGHSQRVPL Trigger: TAGGGGGACTCTTTGTGAATGGCCGGCCCCTTCCTCTGGACACCAGGCAGCAGATTGTGCAGCTAGCAATAAGAGGGATGCGACCCTGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS TCA 90 bp | GCACTTGTCCTGGGCCTCCAATCAGATGATGCACAGGATGGGTGGTaGGGCAGGGCCAGGCAAATTCCACATATGAGGAGGAAGCCACAG | + |
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Preference number: 5 (lower is better) Translates to: ALVLGLQSDDAQDGW*GRARQIPHMRRKPQ Trigger: CTGTGGCTTCCTCCTCATATGTGGAATTTGCCTGGCCCTGCCTCACCACCCATCCTGTGCATCATCTGATTGGAGGCCCAGGACAAGTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS GCA 90 bp | ATGTCACAGGGTCGCATCCCTCTTATTGCTAGCTGCACAATCTGCTaGCTGGTGTCCAGAGGAAGGGGCCGGCCATTCACAAAGAGTCCC | + |
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Preference number: 5 (lower is better) Translates to: MSQGRIPLIASCTIC*LVSRGRGRPFTKSP Trigger: GGGACTCTTTGTGAATGGCCGGCCCCTTCCTCTGGACACCAGGCAGCAGATTGTGCAGCTAGCAATAAGAGGGATGCGACCCTGTGACAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS CCA 90 bp | CCACAGCAGGTGTGGCCAGACGTGGTTTGCTTCCCCCAATACACTTaGGTTCCAAGACACCTGTGCGGTAGTAGCGTCCTAGGATCTTGC | + |
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Preference number: 5 (lower is better) Translates to: PQQVWPDVVCFPQYT*VPRHLCGSSVLGSC Trigger: GCAAGATCCTAGGACGCTACTACCGCACAGGTGTCTTGGAACCCAAGTGTATTGGGGGAAGCAAACCACGTCTGGCCACACCTGCTGTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS TCA 90 bp | TACTGTGGGGACTGGGAAGAACTGGAGCCAACACAGCTGGTGATCTaGGTTGAGTCCAGTGCAAGCTCTGGTCTTCCTGAAGTGCCCGAA | + |
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Preference number: 5 (lower is better) Translates to: YCGDWEELEPTQLVI*VESSASSGLPEVPE Trigger: TTCGGGCACTTCAGGAAGACCAGAGCTTGCACTGGACTCAACTCAGATCACCAGCTGTGTTGGCTCCAGTTCTTCCCAGTCCCCACAGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 |
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| CDS TCA 90 bp | TTTGAGCAATGGGTTGATGGCACTTGTCCTGGGCCTCCAATCAGATaGTGCACAGGATGGGTGGTGAGGCAGGGCCAGGCAAATTCCACA | + |
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Preference number: 5 (lower is better) Translates to: FEQWVDGTCPGPPIR*CTGWVVRQGQANST Trigger: TGTGGAATTTGCCTGGCCCTGCCTCACCACCCATCCTGTGCATCATCTGATTGGAGGCCCAGGACAAGTGCCATCAACCCATTGCTCAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS TCA 90 bp | GGGCCACTGAATCTGGATACTGCCCACGCTGAAACTCTGGTGATCTaGGTTGAGTCCAGTGCAAGCTCTGGTCTTCCTGAAGTGCCCGAA | + |
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Preference number: 5 (lower is better) Translates to: GPLNLDTAHAETLVI*VESSASSGLPEVPE Trigger: TTCGGGCACTTCAGGAAGACCAGAGCTTGCACTGGACTCAACTCAGATCACCAGAGTTTCAGCGTGGGCAGTATCCAGATTCAGTGGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174194.2 |
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| CDS GCA 90 bp | GAAATGTCACAGGGTCGCATCCCTCTTATTGCTAGCTGCACAATCTaGTGCCTGGTGTCCAGAGGAAGGGGCCGGCCATTCACAAAGAGT | + |
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Preference number: 5 (lower is better) Translates to: EMSQGRIPLIASCTI*CLVSRGRGRPFTKS Trigger: ACTCTTTGTGAATGGCCGGCCCCTTCCTCTGGACACCAGGCAGCAGATTGTGCAGCTAGCAATAAGAGGGATGCGACCCTGTGACATTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS CCA 90 bp | GGTACTCATCCTTTAGCTGGGCAATTCGAGCCACCACAGCAGGTGTaGCCAGACGTGGTTTGCTTCCCCCAATACACTTGGGTTCCAAGA | + |
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Preference number: 5 (lower is better) Translates to: GTHPLAGQFEPPQQV*PDVVCFPQYTWVPR Trigger: TCTTGGAACCCAAGTGTATTGGGGGAAGCAAACCACGTCTGGCCACACCTGCTGTGGTGGCTCGAATTGCCCAGCTAAAGGATGAGTACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS CCA 90 bp | TGTTGGATCTCCCAGGCAAAAAGAGCAGGGTACTCATCCTTTAGCTaGGCAATTCGAGCCACCACAGCAGGTGTGGCCAGACGTGGTTTG | + |
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Preference number: 5 (lower is better) Translates to: CWISQAKRAGYSSFS*AIRATTAGVARRGL Trigger: CAAACCACGTCTGGCCACACCTGCTGTGGTGGCTCGAATTGCCCAGCTAAAGGATGAGTACCCTGCTCTTTTTGCCTGGGAGATCCAACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS CCA 90 bp | GCCCGAAGTACTCGATTGATAGAGGACACACTGGGAGCCTTGTCCTaGGTACAAAGCCCTTCAGTGCAAAGCTGGTGTTGGATCTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: ARSTRLIEDTLGALS*VQSPSVQSWCWISQ Trigger: CTGGGAGATCCAACACCAGCTTTGCACTGAAGGGCTTTGTACCCAGGACAAGGCTCCCAGTGTGTCCTCTATCAATCGAGTACTTCGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS TCA 90 bp | ACAGTTACTGTGGGGACTGGGAAGAACTGGAGCCAACACAGCTGGTaGTCTGAGTTGAGTCCAGTGCAAGCTCTGGTCTTCCTGAAGTGC | + |
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Preference number: 5 (lower is better) Translates to: TVTVGTGKNWSQHSW*SELSPVQALVFLKC Trigger: GCACTTCAGGAAGACCAGAGCTTGCACTGGACTCAACTCAGATCACCAGCTGTGTTGGCTCCAGTTCTTCCCAGTCCCCACAGTAACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 |
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| CDS CCA 90 bp | GGAGCCTTGTCCTGGGTACAAAGCCCTTCAGTGCAAAGCTGGTGTTaGATCTCCCAGGCAAAAAGAGCAGGGTACTCATCCTTTAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: GALSWVQSPSVQSWC*ISQAKRAGYSSFSW Trigger: CCAGCTAAAGGATGAGTACCCTGCTCTTTTTGCCTGGGAGATCCAACACCAGCTTTGCACTGAAGGGCTTTGTACCCAGGACAAGGCTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS CCA 90 bp | ACACTGGGAGCCTTGTCCTGGGTACAAAGCCCTTCAGTGCAAAGCTaGTGTTGGATCTCCCAGGCAAAAAGAGCAGGGTACTCATCCTTT | + |
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Preference number: 5 (lower is better) Translates to: TLGALSWVQSPSVQS*CWISQAKRAGYSSF Trigger: AAAGGATGAGTACCCTGCTCTTTTTGCCTGGGAGATCCAACACCAGCTTTGCACTGAAGGGCTTTGTACCCAGGACAAGGCTCCCAGTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS TCA 72 bp | TTCCCACGGGCCACTGAATCTGGATACTGCCCACGCTaGAACTCTTTCTCCAGTGCCTCGGCTTGTCCCGGG | + |
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Preference number: 6 (lower is better) Translates to: FPRATESGYCPR*NSFSSASACPG Trigger: CCCGGGACAAGCCGAGGCACTGGAGAAAGAGTTTCAGCGTGGGCAGTATCCAGATTCAGTGGCCCGTGGGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 |
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| CDS TCA 72 bp | TGGGTTGATGGCACTTGTCCTGGGCCTCCAATCAGATaGTGCACAGGATGGGTGGTGAGGCAGGGCCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: WVDGTCPGPPIR*CTGWVVRQGQA Trigger: TGCCTGGCCCTGCCTCACCACCCATCCTGTGCATCATCTGATTGGAGGCCCAGGACAAGTGCCATCAACCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS GCA 72 bp | CAGGGTCGCATCCCTCTTATTGCTAGCTGCACAATCTaGTGCCTGGTGTCCAGAGGAAGGGGCCGGCCATTC | + |
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Preference number: 6 (lower is better) Translates to: QGRIPLIASCTI*CLVSRGRGRPF Trigger: GAATGGCCGGCCCCTTCCTCTGGACACCAGGCAGCAGATTGTGCAGCTAGCAATAAGAGGGATGCGACCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS TCA 72 bp | CAGCTGAGGGTACACTGCCGGGGGACTGTGCAGAGATaGTCCCTGGCAGCTGTGCTTCCCATTTCAGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: QLRVHCRGTVQR*SLAAVLPISAS Trigger: AGAAGCTGAAATGGGAAGCACAGCTGCCAGGGATCATCTCTGCACAGTCCCCCGGCAGTGTACCCTCAGCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171089.9 |
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| CDS CAA 72 bp | CTGCCCACGCTGAAACTCTTTCTCCAGTGCCTCGGCTaGTCCCGGGGAGAAGATAGTCCGATTCCTGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: LPTLKLFLQCLG*SRGEDSPIPVA Trigger: AGCCACAGGAATCGGACTATCTTCTCCCCGGGACAAGCCGAGGCACTGGAGAAAGAGTTTCAGCGTGGGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 |
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| CDS TCA 72 bp | CTGGGCCTCCAATCAGATGATGCACAGGATGGGTGGTaGGGCAGGGCCAGGCAAATTCCACATATGAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: LGLQSDDAQDGW*GRARQIPHMRR Trigger: CCTCCTCATATGTGGAATTTGCCTGGCCCTGCCTCACCACCCATCCTGTGCATCATCTGATTGGAGGCCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS GCA 72 bp | TTCGAGCCACCACAGCAGGTGTGGCCAGACGTGGTTTaGTTCCCCCAATACACTTGGGTTCCAAGACACCTG | + |
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Preference number: 6 (lower is better) Translates to: FEPPQQVWPDVV*FPQYTWVPRHL Trigger: CAGGTGTCTTGGAACCCAAGTGTATTGGGGGAAGCAAACCACGTCTGGCCACACCTGCTGTGGTGGCTCGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS CCA 72 bp | GGCAATTCGAGCCACCACAGCAGGTGTGGCCAGACGTaGTTTGCTTCCCCCAATACACTTGGGTTCCAAGAC | + |
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Preference number: 6 (lower is better) Translates to: GNSSHHSRCGQT*FASPNTLGFQD Trigger: GTCTTGGAACCCAAGTGTATTGGGGGAAGCAAACCACGTCTGGCCACACCTGCTGTGGTGGCTCGAATTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS CCA 72 bp | CCTTTAGCTGGGCAATTCGAGCCACCACAGCAGGTGTaGCCAGACGTGGTTTGCTTCCCCCAATACACTTGG | + |
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Preference number: 6 (lower is better) Translates to: PLAGQFEPPQQV*PDVVCFPQYTW Trigger: CCAAGTGTATTGGGGGAAGCAAACCACGTCTGGCCACACCTGCTGTGGTGGCTCGAATTGCCCAGCTAAAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS CCA 72 bp | GTGTGGCCAGACGTGGTTTGCTTCCCCCAATACACTTaGGTTCCAAGACACCTGTGCGGTAGTAGCGTCCTA | + |
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Preference number: 6 (lower is better) Translates to: VWPDVVCFPQYT*VPRHLCGSSVL Trigger: TAGGACGCTACTACCGCACAGGTGTCTTGGAACCCAAGTGTATTGGGGGAAGCAAACCACGTCTGGCCACAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS CCA 72 bp | TCCCAGGCAAAAAGAGCAGGGTACTCATCCTTTAGCTaGGCAATTCGAGCCACCACAGCAGGTGTGGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: SQAKRAGYSSFS*AIRATTAGVAR Trigger: TCTGGCCACACCTGCTGTGGTGGCTCGAATTGCCCAGCTAAAGGATGAGTACCCTGCTCTTTTTGCCTGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS CCA 72 bp | AGTAGGGTTGGAGATAGGCCTGGGATGAGGTGTCACTaGAACATCTGCCTGGTGCTGTCCCACAGCATAGCT | + |
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Preference number: 6 (lower is better) Translates to: SRVGDRPGMRCH*NICLVLSHSIA Trigger: AGCTATGCTGTGGGACAGCACCAGGCAGATGTTCCAGTGACACCTCATCCCAGGCCTATCTCCAACCCTACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS CAA 72 bp | GGCTCCGTGAAATGTCACAGGGTCGCATCCCTCTTATaGCTAGCTGCACAATCTGCTGCCTGGTGTCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: GSVKCHRVASLL*LAAQSAAWCPE Trigger: CTCTGGACACCAGGCAGCAGATTGTGCAGCTAGCAATAAGAGGGATGCGACCCTGTGACATTTCACGGAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS CAA 72 bp | ATTCGAGCCACCACAGCAGGTGTGGCCAGACGTGGTTaGCTTCCCCCAATACACTTGGGTTCCAAGACACCT | + |
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Preference number: 6 (lower is better) Translates to: IRATTAGVARRG*LPPIHLGSKTP Trigger: AGGTGTCTTGGAACCCAAGTGTATTGGGGGAAGCAAACCACGTCTGGCCACACCTGCTGTGGTGGCTCGAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS GCA 72 bp | CACTGGGAGCCTTGTCCTGGGTACAAAGCCCTTCAGTaGAAAGCTGGTGTTGGATCTCCCAGGCAAAAAGAG | + |
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Preference number: 6 (lower is better) Translates to: HWEPCPGYKALQ*KAGVGSPRQKE Trigger: CTCTTTTTGCCTGGGAGATCCAACACCAGCTTTGCACTGAAGGGCTTTGTACCCAGGACAAGGCTCCCAGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS CCA 72 bp | GCCTTGTCCTGGGTACAAAGCCCTTCAGTGCAAAGCTaGTGTTGGATCTCCCAGGCAAAAAGAGCAGGGTAC | + |
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Preference number: 6 (lower is better) Translates to: ALSWVQSPSVQS*CWISQAKRAGY Trigger: GTACCCTGCTCTTTTTGCCTGGGAGATCCAACACCAGCTTTGCACTGAAGGGCTTTGTACCCAGGACAAGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS TCA 72 bp | GACTGGGAAGAACTGGAGCCAACACAGCTGGTGATCTaGGTTGAGTCCAGTGCAAGCTCTGGTCTTCCTGAA | + |
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Preference number: 6 (lower is better) Translates to: DWEELEPTQLVI*VESSASSGLPE Trigger: TTCAGGAAGACCAGAGCTTGCACTGGACTCAACTCAGATCACCAGCTGTGTTGGCTCCAGTTCTTCCCAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 |
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| CDS GCA 72 bp | GAGTTGAGTCCAGTGCAAGCTCTGGTCTTCCTGAAGTaGCCGAAGTACTCGATTGATAGAGGACACACTGGG | + |
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Preference number: 6 (lower is better) Translates to: ELSPVQALVFLK*PKYSIDRGHTG Trigger: CCCAGTGTGTCCTCTATCAATCGAGTACTTCGGGCACTTCAGGAAGACCAGAGCTTGCACTGGACTCAACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS CCA 72 bp | TCCTGGGTACAAAGCCCTTCAGTGCAAAGCTGGTGTTaGATCTCCCAGGCAAAAAGAGCAGGGTACTCATCC | + |
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Preference number: 6 (lower is better) Translates to: SWVQSPSVQSWC*ISQAKRAGYSS Trigger: GGATGAGTACCCTGCTCTTTTTGCCTGGGAGATCCAACACCAGCTTTGCACTGAAGGGCTTTGTACCCAGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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| CDS CCA 72 bp | ACTCGATTGATAGAGGACACACTGGGAGCCTTGTCCTaGGTACAAAGCCCTTCAGTGCAAAGCTGGTGTTGG | + |
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Preference number: 6 (lower is better) Translates to: TRLIEDTLGALS*VQSPSVQSWCW Trigger: CCAACACCAGCTTTGCACTGAAGGGCTTTGTACCCAGGACAAGGCTCCCAGTGTGTCCTCTATCAATCGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031718.14 ENSMUST00000164519.9 ENSMUST00000171089.9 ENSMUST00000174194.2 |
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