Pregenerated sensors for PAX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037034Ensembl transcript IDs: ENSMUST00000109968.3, ENSMUST00000126068.9
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCAATCCAAGGAAGTTGTACTCTTGTTTGTTACTATAAAAATATATaGTTAAGGGCTTTGGCTTTGCTCCTAGGTTCAAGCCCCACTCCC | + |
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Preference number: 1 (lower is better) Translates to: AIQGSCTLVCYYKNI*LRALALLLGSSPTP Trigger: GGGAGTGGGGCTTGAACCTAGGAGCAAAGCCAAAGCCCTTAATCATATATTTTTATAGTAACAAACAAGAGTACAACTTCCTTGGATTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| 3UTR GCA 90 bp | CAGACTCTCACCAGTAATATGTTTATGACTACAACAATTGAATTATaGTCAGAGTCCCCACCACCAGTGCGCCTTAACTTGAAATCATTT | + |
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Preference number: 1 (lower is better) Translates to: QTLTSNMFMTTTIEL*SESPPPVRLNLKSF Trigger: AAATGATTTCAAGTTAAGGCGCACTGGTGGTGGGGACTCTGAGCATAATTCAATTGTTGTAGTCATAAACATATTACTGGTGAGAGTCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| 3UTR-3UTR GCA 90 bp | TGCCTAGCTCCAGAAGAAGCCTTCTGGGTTCCTGGGTTTTTGCCCACCCCAATTTGGGTCCTTGAAGAATaGACTGAAGTTTTCCCCACC | + |
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Preference number: 2 (lower is better) Translates to: CLAPEEAFWVPGFLPTPIWVLEE*TEVFPT Trigger: GGTGGGGAAAACTTCAGTGCATTCTTCAAGGACCCA...AATTGGGGTGGGCAAAAACCCAGGAACCCAGAAGGCTTCTTCTGGAGCTAGGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| 3UTR-3UTR TCA 90 bp | TGCCTAGCTCCAGAAGAAGCCTTCTGGGTTCCTGGGTTTTTGCCCACCCCAATTGAGAAAGGATTGAGATaGGAATATAAAGGAGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: CLAPEEAFWVPGFLPTPIEKGLR*EYKGGK Trigger: CTTCCCTCCTTTATATTCTCATCTCAATCCTTTCTC...AATTGGGGTGGGCAAAAACCCAGGAACCCAGAAGGCTTCTTCTGGAGCTAGGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| 3UTR-3UTR CCA 90 bp | AAACCAGAAACCAAAATGAACCTCACCACCCTGAAGCAGTTTGTTCTTCAAAATAAAAATAAATTGAGGTaGATGCAGGAGTCTCTCTCC | + |
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Preference number: 2 (lower is better) Translates to: KPETKMNLTTLKQFVLQNKNKLR*MQESLS Trigger: GGAGAGAGACTCCTGCATCCACCTCAATTTATTTTT...ATTTTGAAGAACAAACTGCTTCAGGGTGGTGAGGTTCATTTTGGTTTCTGGTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| 3UTR GCA 72 bp | AAGGAAGCACCGGCGGAACTGTTGAGACCAAAGCAATaGCGGGGCCCCAACTCCAGGATGCTGCTAGCGCAG | + |
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Preference number: 3 (lower is better) Translates to: KEAPAELLRPKQ*RGPNSRMLLAQ Trigger: CTGCGCTAGCAGCATCCTGGAGTTGGGGCCCCGGCATTGCTTTGGTCTCAACAGTTCCGCCGGTGCTTCCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| 3UTR TCA 72 bp | ACAAATGTACTGAGCCCCAAACACCCGAAACCATGCTaGTGGCTCTGGAGGTACATTAAGGAGTGTTGGGCA | + |
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Preference number: 3 (lower is better) Translates to: TNVLSPKHPKPC*WLWRYIKECWA Trigger: TGCCCAACACTCCTTAATGTACCTCCAGAGCCATCAGCATGGTTTCGGGTGTTTGGGGCTCAGTACATTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| 3UTR-3UTR CAA 90 bp | CCTCACCAAGCTGGCGAGTTTCAGACTTTCCTTTATTCAAAGGCAGCCATGTTTGCCCACCCCAATTCTTaGCAAACCAGAAACCAAAAT | + |
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Preference number: 3 (lower is better) Translates to: PHQAGEFQTFLYSKAAMFAHPNS*QTRNQN Trigger: ATTTTGGTTTCTGGTTTGCAAAGAATTGGGGTGGGC...AAACATGGCTGCCTTTGAATAAAGGAAAGTCTGAAACTCGCCAGCTTGGTGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| 3UTR-3UTR CAA 90 bp | GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGCAGAAAGAGCAAAACAAAAATAAATaGAGGTGGATGCAGGAGTCT | + |
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Preference number: 3 (lower is better) Translates to: ERERERERERERERMQKEQNKNK*RWMQES Trigger: AGACTCCTGCATCCACCTCAATTTATTTTTGTTTTG...CTCTTTCTGCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| 3UTR GCA 72 bp | ACCAGTAATATGTTTATGACTACAACAATTGAATTATaGTCAGAGTCCCCACCACCAGTGCGCCTTAACTTG | + |
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Preference number: 3 (lower is better) Translates to: TSNMFMTTTIEL*SESPPPVRLNL Trigger: CAAGTTAAGGCGCACTGGTGGTGGGGACTCTGAGCATAATTCAATTGTTGTAGTCATAAACATATTACTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR TCA 90 bp | ATGCCGGGGCCCCAACTCCAGGATGCTGCTAGCGCAGAGGTGCAGAGGTCGAATGCTGGAGACGCGCAGTaGGCCGCTGCCCAGCGCGCC | + |
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Preference number: 4 (lower is better) Translates to: MPGPQLQDAASAEVQRSNAGDAQ*AAAQRA Trigger: GGCGCGCTGGGCAGCGGCTCACTGCGCGTCTCCAGC...ATTCGACCTCTGCACCTCTGCGCTAGCAGCATCCTGGAGTTGGGGCCCCGGCAT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR CCA 90 bp | ATGCCGGGGCCCCAACTCCAGGATGCTGCTAGCGCAGAGGTGCAGAGGTCGAATCCTTGCCTCCCGGGCTaGGGGGCTTCCGGTCGGTCC | + |
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Preference number: 4 (lower is better) Translates to: MPGPQLQDAASAEVQRSNPCLPG*GASGRS Trigger: GGACCGACCGGAAGCCCCCCAGCCCGGGAGGCAAGG...ATTCGACCTCTGCACCTCTGCGCTAGCAGCATCCTGGAGTTGGGGCCCCGGCAT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR GCA 90 bp | GCTGCTAGCGCAGAGGTGCAGAGGTCGAATGAGCTGAGCTGCACTCCCGGCCGGATGATTGTAGGGCAGTaGAGGCTGCGGAGGCGGCTG | + |
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Preference number: 4 (lower is better) Translates to: AASAEVQRSNELSCTPGRMIVGQ*RLRRRL Trigger: CAGCCGCCTCCGCAGCCTGCACTGCCCTACAATCAT...CCGGCCGGGAGTGCAGCTCAGCTCATTCGACCTCTGCACCTCTGCGCTAGCAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR CCA 90 bp | GCTGCTAGCGCAGAGGTGCAGAGGTCGAATGAGCTGAGCTGCACTCCCGGCCGGTGGGTGACACTGGGCTaGGGTAGGGGTACTGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: AASAEVQRSNELSCTPGRWVTLG*GRGTGR Trigger: TCTACCAGTACCCCTACCCCAGCCCAGTGTCACCCA...CCGGCCGGGAGTGCAGCTCAGCTCATTCGACCTCTGCACCTCTGCGCTAGCAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR GCA 90 bp | AGCGCAGAGGTGCAGAGGTCGAATGAGCTGAGCTGCACTCCCGGCCGGCTCCTCCTGGCTGCGCCAGGCTaGCAATCTTATTTCGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: SAEVQRSNELSCTPGRLLLAAPG*QSYFAG Trigger: TCCTGCGAAATAAGATTGGCAGCCTGGCGCAGCCAG...GAGGAGCCGGCCGGGAGTGCAGCTCAGCTCATTCGACCTCTGCACCTCTGCGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR TCA 90 bp | GCGGAACTGTTGAGACCAAAGCAATGCCGGGGCCCCAACTCCAGGATGCTGCTATGCCCAGGATGTTGCTaGCTGAATGTGCGGAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: AELLRPKQCRGPNSRMLLCPGCC*LNVRRA Trigger: GGCCCTCCGCACATTCAGTCAGCAACATCCTGGGCA...TAGCAGCATCCTGGAGTTGGGGCCCCGGCATTGCTTTGGTCTCAACAGTTCCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR GCA 90 bp | CTCTTGCCTAGCTCCAGAAGAAGCCTTCTGGGTTCCTGGGTTTTTGCCCACCCCAGGCGGCTGCTTACTTaGTTCGTATGGCCCTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LLPSSRRSLLGSWVFAHPRRLLT*FVWPWL Trigger: CAGCCAGGGCCATACGAAGCAAGTAAGCAGCCGCCT...GGGGTGGGCAAAAACCCAGGAACCCAGAAGGCTTCTTCTGGAGCTAGGCAAGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR CCA 90 bp | CTCTTGCCTAGCTCCAGAAGAAGCCTTCTGGGTTCCTGGGTTTTTGCCCACCCCAGGTCGAGGCTGGGATaGGCAGTCCGTGTAAGCTAC | + |
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Preference number: 4 (lower is better) Translates to: LLPSSRRSLLGSWVFAHPRSRLG*AVRVSY Trigger: GTAGCTTACACGGACTGCCCATCCCAGCCTCGACCT...GGGGTGGGCAAAAACCCAGGAACCCAGAAGGCTTCTTCTGGAGCTAGGCAAGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR CCA 90 bp | AAACACCACCAGTCCCAACACCAGTCCCAGCATCTCTTTCTCCTGTCCTGTCTTTCACTGCTGGCGAGGTaGGGAAGGCCGCACGGTTCA | + |
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Preference number: 4 (lower is better) Translates to: KHHQSQHQSQHLFLLSCLSLLAR*GRPHGS Trigger: TGAACCGTGCGGCCTTCCCCACCTCGCCAGCAGTGA...AAGACAGGACAGGAGAAAGAGATGCTGGGACTGGTGTTGGGACTGGTGGTGTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR TCA 90 bp | TGCCTAGCTCCAGAAGAAGCCTTCTGGGTTCCTGGGTTTTTGCCCACCCCAATTTTGCTCACGCAGCCATaGGAGACCCGCAGTTGCCTA | + |
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Preference number: 4 (lower is better) Translates to: CLAPEEAFWVPGFLPTPILLTQP*ETRSCL Trigger: TAGGCAACTGCGGGTCTCTCATGGCTGCGTGAGCAA...AATTGGGGTGGGCAAAAACCCAGGAACCCAGAAGGCTTCTTCTGGAGCTAGGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR TCA 90 bp | TCTGGGTTCCTGGGTTTTTGCCCACCCCAATTCTTTGCAAACCAGAAACCAAAACCGGGGACCCCGGGATaGGTGCCCATCTTAGTGCCC | + |
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Preference number: 4 (lower is better) Translates to: SGFLGFCPPQFFANQKPKPGTPG*VPILVP Trigger: GGGCACTAAGATGGGCACTCATCCCGGGGTCCCCGG...TTTTGGTTTCTGGTTTGCAAAGAATTGGGGTGGGCAAAAACCCAGGAACCCAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR GCA 90 bp | TGCCTAGCTCCAGAAGAAGCCTTCTGGGTTCCTGGGTTTTTGCCCACCCCAATTTCGTATGGCCCTGGCTaGGCCAGGCTGCCAATCTTA | + |
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Preference number: 4 (lower is better) Translates to: CLAPEEAFWVPGFLPTPISYGPG*ARLPIL Trigger: TAAGATTGGCAGCCTGGCGCAGCCAGGGCCATACGA...AATTGGGGTGGGCAAAAACCCAGGAACCCAGAAGGCTTCTTCTGGAGCTAGGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR TCA 90 bp | CCTCACCAAGCTGGCGAGTTTCAGACTTTCCTTTATTCAAAGGCAGCCATGTTTCTTAGTGCCCGTGGGTaGCACTGGGCTGGGGTAGGG | + |
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Preference number: 4 (lower is better) Translates to: PHQAGEFQTFLYSKAAMFLSARG*HWAGVG Trigger: CCCTACCCCAGCCCAGTGTCACCCACGGGCACTAAG...AAACATGGCTGCCTTTGAATAAAGGAAAGTCTGAAACTCGCCAGCTTGGTGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR GCA 90 bp | AAACACCACCAGTCCCAACACCAGTCCCAGCATCTCTTTCTCCTGTCCTGTCTTGCCAGGGCCCCTGTTTaGTCCATAAACGTCCGGATG | + |
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Preference number: 4 (lower is better) Translates to: KHHQSQHQSQHLFLLSCLARAPV*SINVRM Trigger: CATCCGGACGTTTATGGAGCAAACAGGGGCCCTGGC...AAGACAGGACAGGAGAAAGAGATGCTGGGACTGGTGTTGGGACTGGTGGTGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR CCA 90 bp | ACCAAGCTGGCGAGTTTCAGACTTTCCTTTATTCAAAGGCAGCCATGTTTAACAGCCACACCAGCTCCGTaGGGCGTCAGTGGGGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: TKLASFRLSFIQRQPCLTATPAP*GVSGGA Trigger: GGCACCCCCACTGACGCCCCACGGAGCTGGTGTGGC...TGTTAAACATGGCTGCCTTTGAATAAAGGAAAGTCTGAAACTCGCCAGCTTGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR TCA 90 bp | ACCAAGCTGGCGAGTTTCAGACTTTCCTTTATTCAAAGGCAGCCATGTTTAACAATGAACGCGGGATACTaGCGTGGCCCGCCGAGCCGG | + |
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Preference number: 4 (lower is better) Translates to: TKLASFRLSFIQRQPCLTMNAGY*RGPPSR Trigger: CCGGCTCGGCGGGCCACGTCAGTATCCCGCGTTCAT...TGTTAAACATGGCTGCCTTTGAATAAAGGAAAGTCTGAAACTCGCCAGCTTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR GCA 90 bp | TGCCTAGCTCCAGAAGAAGCCTTCTGGGTTCCTGGGTTTTTGCCCACCCCAATTTCTCCCAGGCAAAGATaGCAGGATCCCCCTGTTTGT | + |
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Preference number: 4 (lower is better) Translates to: CLAPEEAFWVPGFLPTPISPRQR*QDPPVC Trigger: ACAAACAGGGGGATCCTGGCATCTTTGCCTGGGAGA...AATTGGGGTGGGCAAAAACCCAGGAACCCAGAAGGCTTCTTCTGGAGCTAGGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR GCA 90 bp | AAACCAGAAACCAAAATGAACCTCACCACCCTGAAGCAGTTTGTTCTTCAAAATGGGCGTCAGTGGGGGTaGCTGGGCTGGTGGCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: KPETKMNLTTLKQFVLQNGRQWG*LGWWPG Trigger: CCCTGGCCACCAGCCCAGGCACCCCCACTGACGCCC...ATTTTGAAGAACAAACTGCTTCAGGGTGGTGAGGTTCATTTTGGTTTCTGGTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR TCA 90 bp | GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGCAGAAAGAGTTCGCAGGATGCGACTaGTGGAGCTCACAGAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: ERERERERERERERMQKEFAGCD*WSSQRA Trigger: TGCCCTCTGTGAGCTCCATCAGTCGCATCCTGCGAA...CTCTTTCTGCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR GCA 90 bp | CCTCACCAAGCTGGCGAGTTTCAGACTTTCCTTTATTCAAAGGCAGCCATGTTTCTCGAGTCCATTCACTaGTGGCGAGGTGGGGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: PHQAGEFQTFLYSKAAMFLESIH*WRGGEG Trigger: GCCTTCCCCACCTCGCCAGCAGTGAATGGACTCGAG...AAACATGGCTGCCTTTGAATAAAGGAAAGTCTGAAACTCGCCAGCTTGGTGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR CCA 90 bp | AAACCAGAAACCAAAATGAACCTCACCACCCTGAAGCAGTTTGTTCTTCAAAATTCCGTGGGGCGTCAGTaGGGGTGCCTGGGCTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: KPETKMNLTTLKQFVLQNSVGRQ*GCLGWW Trigger: CCACCAGCCCAGGCACCCCCACTGACGCCCCACGGA...ATTTTGAAGAACAAACTGCTTCAGGGTGGTGAGGTTCATTTTGGTTTCTGGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR TCA 90 bp | AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGCAGAAAGAGACCCGCAGTTGCCTACTaGTGTCACAGGGTCGGATAC | + |
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Preference number: 4 (lower is better) Translates to: RERERERERERERECRKRPAVAY*CHRVGY Trigger: GTATCCGACCCTGTGACATCAGTAGGCAACTGCGGG...TCTCTTTCTGCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR CCA 90 bp | CCTCACCAAGCTGGCGAGTTTCAGACTTTCCTTTATTCAAAGGCAGCCATGTTTCTTACTTGCTTCGTATaGCCCTGGCTGCGCCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: PHQAGEFQTFLYSKAAMFLTCFV*PWLRQA Trigger: AGCCTGGCGCAGCCAGGGCCATACGAAGCAAGTAAG...AAACATGGCTGCCTTTGAATAAAGGAAAGTCTGAAACTCGCCAGCTTGGTGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR CCA 90 bp | ACCAAGCTGGCGAGTTTCAGACTTTCCTTTATTCAAAGGCAGCCATGTTTAACATGCTTCGTATGGCCCTaGCTGCGCCAGGCTGCCAAT | + |
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Preference number: 4 (lower is better) Translates to: TKLASFRLSFIQRQPCLTCFVWP*LRQAAN Trigger: ATTGGCAGCCTGGCGCAGCCAGGGCCATACGAAGCA...TGTTAAACATGGCTGCCTTTGAATAAAGGAAAGTCTGAAACTCGCCAGCTTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR CCA 90 bp | ACCAAGCTGGCGAGTTTCAGACTTTCCTTTATTCAAAGGCAGCCATGTTTAACAATACTCCGTGCTGGTTaGAAGCCGGGTAGGCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: TKLASFRLSFIQRQPCLTILRAG*KPGRRR Trigger: CCTGCGCCTACCCGGCTTCCAACCAGCACGGAGTAT...TGTTAAACATGGCTGCCTTTGAATAAAGGAAAGTCTGAAACTCGCCAGCTTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR CCA 90 bp | AAACCAGAAACCAAAATGAACCTCACCACCCTGAAGCAGTTTGTTCTTCAAAATCGATTCGTAGGCGGATaGCATTGGGCAGGGGACGGC | + |
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Preference number: 4 (lower is better) Translates to: KPETKMNLTTLKQFVLQNRFVGG*HWAGDG Trigger: GCCGTCCCCTGCCCAATGCCATCCGCCTACGAATCG...ATTTTGAAGAACAAACTGCTTCAGGGTGGTGAGGTTCATTTTGGTTTCTGGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| 3UTR CAA 72 bp | CTAGCTCCAGAAGAAGCCTTCTGGGTTCCTGGGTTTTaGCCCACCCCAATTCTTTGCAAACCAGAAACCAAA | + |
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Preference number: 4 (lower is better) Translates to: LAPEEAFWVPGF*PTPILCKPETK Trigger: TTTGGTTTCTGGTTTGCAAAGAATTGGGGTGGGCAAAAACCCAGGAACCCAGAAGGCTTCTTCTGGAGCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR CCA 90 bp | AAACCAGAAACCAAAATGAACCTCACCACCCTGAAGCAGTTTGTTCTTCAAAATCCCAGTCTTCCATCTTaGGGGAGTAGGCAGCGCCTT | + |
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Preference number: 4 (lower is better) Translates to: KPETKMNLTTLKQFVLQNPSLPS*GSRQRL Trigger: AAGGCGCTGCCTACTCCCCCAAGATGGAAGACTGGG...ATTTTGAAGAACAAACTGCTTCAGGGTGGTGAGGTTCATTTTGGTTTCTGGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR TCA 90 bp | ACCAAGCTGGCGAGTTTCAGACTTTCCTTTATTCAAAGGCAGCCATGTTTAACAAGGCTGGAAGCCGACTaGGTATATTTAATGTCTGCC | + |
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Preference number: 4 (lower is better) Translates to: TKLASFRLSFIQRQPCLTRLEAD*VYLMSA Trigger: GGCAGACATTAAATATACTCAGTCGGCTTCCAGCCT...TGTTAAACATGGCTGCCTTTGAATAAAGGAAAGTCTGAAACTCGCCAGCTTGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR GCA 90 bp | AAACCAGAAACCAAAATGAACCTCACCACCCTGAAGCAGTTTGTTCTTCAAAATAGTATATTTAATGTCTaGCTCCAAGGCAGGTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: KPETKMNLTTLKQFVLQNSIFNV*LQGRFL Trigger: GAGAAACCTGCCTTGGAGGCAGACATTAAATATACT...ATTTTGAAGAACAAACTGCTTCAGGGTGGTGAGGTTCATTTTGGTTTCTGGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS CCA 90 bp | AGAGGCATAGAGGGAGGGCGCGCGCGAGCCGTGGGCCGCGGCGGCTaGAGACGCGCAGTGAGCCGCTGCCCAGCGCGCCGCCCGCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: RGIEGGRARAVGRGG*RRAVSRCPARRPPQ Trigger: CTGGGGCGGGCGGCGCGCTGGGCAGCGGCTCACTGCGCGTCTCCAGCCGCCGCGGCCCACGGCTCGCGCGCGCCCTCCCTCTATGCCTCT 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS GCA 90 bp | TTCACTTCGCCGTACGTCTGCTCCATCGCGCGCGGGCCGGCCAGCTaGCTGGCGCCGGAGCGGCGGGGGCTGGGCCCGGCGCAGTCCGGG | + |
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Preference number: 5 (lower is better) Translates to: FTSPYVCSIARGPAS*LAPERRGLGPAQSG Trigger: CCCGGACTGCGCCGGGCCCAGCCCCCGCCGCTCCGGCGCCAGGCAGCTGGCCGGCCCGCGCGCGATGGAGCAGACGTACGGCGAAGTGAA 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS GCA 90 bp | CGGGAAGAGTTTGTCGCCCCCTGTCGGGTCCGGTCCCGGCTTGGCTaGGCAGGTTCCCGCGCAGCTGGCTGGATGAGGTGGCGCAAAGGT | + |
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Preference number: 5 (lower is better) Translates to: REEFVAPCRVRSRLG*AGSRAAGWMRWRKG Trigger: ACCTTTGCGCCACCTCATCCAGCCAGCTGCGCGGGAACCTGCGCAGCCAAGCCGGGACCGGACCCGACAGGGGGCGACAAACTCTTCCCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000126068.9 |
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| CDS GCA 90 bp | GGGCTTCCGGTCGGTCCCTTCTCGGTGTTTGAAGGTCATTGCCGCTaGAAGCTCCCCGCCGTGCACCGCCACACCAGCTCCGTGGGGCGT | + |
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Preference number: 5 (lower is better) Translates to: GLPVGPFSVFEGHCR*KLPAVHRHTSSVGR Trigger: ACGCCCCACGGAGCTGGTGTGGCGGTGCACGGCGGGGAGCTTGCAGCGGCAATGACCTTCAAACACCGAGAAGGGACCGACCGGAAGCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS CCA 90 bp | ATGGCATTGGGCAGGGGACGGCCGTTGACGAACACGCCACCAAGTTaGTTCACTTCGCCGTACGTCTGCTCCATCGCGCGCGGGCCGGCC | + |
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Preference number: 5 (lower is better) Translates to: MALGRGRPLTNTPPS*FTSPYVCSIARGPA Trigger: GGCCGGCCCGCGCGCGATGGAGCAGACGTACGGCGAAGTGAACCAACTTGGTGGCGTGTTCGTCAACGGCCGTCCCCTGCCCAATGCCAT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS CCA 90 bp | GAGATAGGTAGCCGGCTGCTGGAGCGCTGTATACTCCGTGCTGGTTaGAAGCCGGGTAGGCGCAGGCAGGAAGGAAGCCTCCCACTGCGG | + |
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Preference number: 5 (lower is better) Translates to: EIGSRLLERCILRAG*KPGRRRQEGSLPLR Trigger: CCGCAGTGGGAGGCTTCCTTCCTGCCTGCGCCTACCCGGCTTCCAACCAGCACGGAGTATACAGCGCTCCAGCAGCCGGCTACCTATCTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS TCA 90 bp | TCCGGTCCCGGCTTGGCTGCGCAGGTTCCCGCGCAGCTGGCTGGATaGGGTGGCGCAAAGGTTGGAGTGCAGAAGGCAAAGTGTCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: SGPGLAAQVPAQLAG*GGAKVGVQKAKCLF Trigger: GAAGAGACACTTTGCCTTCTGCACTCCAACCTTTGCGCCACCTCATCCAGCCAGCTGCGCGGGAACCTGCGCAGCCAAGCCGGGACCGGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126068.9 |
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| CDS-3UTR CAA 90 bp | AGCGCAGAGGTGCAGAGGTCGAATGAGCTGAGCTGCACTCCCGGCCGGCTCCTCAGCCAGGGCCCCTGTTaGCTCCATAAACGTCCGGAT | + |
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Preference number: 5 (lower is better) Translates to: SAEVQRSNELSCTPGRLLSQGPC*LHKRPD Trigger: ATCCGGACGTTTATGGAGCAAACAGGGGCCCTGGCT...GAGGAGCCGGCCGGGAGTGCAGCTCAGCTCATTCGACCTCTGCACCTCTGCGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS CCA 90 bp | GTAGGGCAGTGCAGGCTGCGGAGGCGGCTGCTTACTTGCTTCGTATaGCCCTGGCTGCGCCAGGCTGCCAATCTTATTTCGCAGGATGCG | + |
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Preference number: 5 (lower is better) Translates to: VGQCRLRRRLLTCFV*PWLRQAANLISQDA Trigger: CGCATCCTGCGAAATAAGATTGGCAGCCTGGCGCAGCCAGGGCCATACGAAGCAAGTAAGCAGCCGCCTCCGCAGCCTGCACTGCCCTAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS CCA 90 bp | CTGCCTCCAAGGCAGGTTTCTCGAGTCCATTCACTGCTGGCGAGGTaGGGAAGGCCGCACGGTTCACACCCGCCCAGTCTTCCATCTTGG | + |
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Preference number: 5 (lower is better) Translates to: LPPRQVSRVHSLLAR*GRPHGSHPPSLPSW Trigger: CCAAGATGGAAGACTGGGCGGGTGTGAACCGTGCGGCCTTCCCCACCTCGCCAGCAGTGAATGGACTCGAGAAACCTGCCTTGGAGGCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS TCA 90 bp | GCTCCACGATTCGTAGGCGGATGGCATTGGGCAGGGGACGGCCGTTaGCGAACACGCCACCAAGTTGGTTCACTTCGCCGTACGTCTGCT | + |
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Preference number: 5 (lower is better) Translates to: APRFVGGWHWAGDGR*RTRHQVGSLRRTSA Trigger: AGCAGACGTACGGCGAAGTGAACCAACTTGGTGGCGTGTTCGTCAACGGCCGTCCCCTGCCCAATGCCATCCGCCTACGAATCGTGGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS CCA 90 bp | CAGTGCAGGCTGCGGAGGCGGCTGCTTACTTGCTTCGTATGGCCCTaGCTGCGCCAGGCTGCCAATCTTATTTCGCAGGATGCGACTGAT | + |
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Preference number: 5 (lower is better) Translates to: QCRLRRRLLTCFVWP*LRQAANLISQDATD Trigger: ATCAGTCGCATCCTGCGAAATAAGATTGGCAGCCTGGCGCAGCCAGGGCCATACGAAGCAAGTAAGCAGCCGCCTCCGCAGCCTGCACTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS CCA 90 bp | TTTAATGTCTGCCTCCAAGGCAGGTTTCTCGAGTCCATTCACTGCTaGCGAGGTGGGGAAGGCCGCACGGTTCACACCCGCCCAGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: FNVCLQGRFLESIHC*RGGEGRTVHTRPVF Trigger: GAAGACTGGGCGGGTGTGAACCGTGCGGCCTTCCCCACCTCGCCAGCAGTGAATGGACTCGAGAAACCTGCCTTGGAGGCAGACATTAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS GCA 90 bp | ATATTTAATGTCTGCCTCCAAGGCAGGTTTCTCGAGTCCATTCACTaGTGGCGAGGTGGGGAAGGCCGCACGGTTCACACCCGCCCAGTC | + |
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Preference number: 5 (lower is better) Translates to: IFNVCLQGRFLESIH*WRGGEGRTVHTRPV Trigger: GACTGGGCGGGTGTGAACCGTGCGGCCTTCCCCACCTCGCCAGCAGTGAATGGACTCGAGAAACCTGCCTTGGAGGCAGACATTAAATAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR CAA 90 bp | AAACACCACCAGTCCCAACACCAGTCCCAGCATCTCTTTCTCCTGTCCTGTCTTGTGGTAACTCGAGGTTaGCTGCCCCCGATGGCCCCG | + |
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Preference number: 5 (lower is better) Translates to: KHHQSQHQSQHLFLLSCLVVTRG*LPPMAP Trigger: CGGGGCCATCGGGGGCAGCAAACCTCGAGTTACCAC...AAGACAGGACAGGAGAAAGAGATGCTGGGACTGGTGTTGGGACTGGTGGTGTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS TCA 90 bp | CAGGCAGGAAGGAAGCCTCCCACTGCGGAGAGGCTGGAAGCCGACTaGGTATATTTAATGTCTGCCTCCAAGGCAGGTTTCTCGAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: QAGRKPPTAERLEAD*VYLMSASKAGFSSP Trigger: TGGACTCGAGAAACCTGCCTTGGAGGCAGACATTAAATATACTCAGTCGGCTTCCAGCCTCTCCGCAGTGGGAGGCTTCCTTCCTGCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR CAA 90 bp | AAACACCACCAGTCCCAACACCAGTCCCAGCATCTCTTTCTCCTGTCCTGTCTTGAGGCGGCTGCTTACTaGCTTCGTATGGCCCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: KHHQSQHQSQHLFLLSCLEAAAY*LRMALA Trigger: AGCCAGGGCCATACGAAGCAAGTAAGCAGCCGCCTC...AAGACAGGACAGGAGAAAGAGATGCTGGGACTGGTGTTGGGACTGGTGGTGTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS GCA 90 bp | TCCCACTGCGGAGAGGCTGGAAGCCGACTGAGTATATTTAATGTCTaGCTCCAAGGCAGGTTTCTCGAGTCCATTCACTGCTGGCGAGGT | + |
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Preference number: 5 (lower is better) Translates to: SHCGEAGSRLSIFNV*LQGRFLESIHCWRG Trigger: ACCTCGCCAGCAGTGAATGGACTCGAGAAACCTGCCTTGGAGGCAGACATTAAATATACTCAGTCGGCTTCCAGCCTCTCCGCAGTGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS-3UTR CAA 90 bp | ACCAAGCTGGCGAGTTTCAGACTTTCCTTTATTCAAAGGCAGCCATGTTTAACACTCACAGAGGGCACGTaGTACTTGTCACAAACGCCA | + |
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Preference number: 5 (lower is better) Translates to: TKLASFRLSFIQRQPCLTLTEGT*YLSQTP Trigger: TGGCGTTTGTGACAAGTACAACGTGCCCTCTGTGAG...TGTTAAACATGGCTGCCTTTGAATAAAGGAAAGTCTGAAACTCGCCAGCTTGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS GCA 72 bp | TTTGTCGCCCCCTGTCGGGTCCGGTCCCGGCTTGGCTaGGCAGGTTCCCGCGCAGCTGGCTGGATGAGGTGG | + |
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Preference number: 6 (lower is better) Translates to: FVAPCRVRSRLG*AGSRAAGWMRW Trigger: CCACCTCATCCAGCCAGCTGCGCGGGAACCTGCGCAGCCAAGCCGGGACCGGACCCGACAGGGGGCGACAAA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000126068.9 |
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| CDS CCA 72 bp | AGAGTTTGTCGCCCCCTGTCGGGTCCGGTCCCGGCTTaGCTGCGCAGGTTCCCGCGCAGCTGGCTGGATGAG | + |
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Preference number: 6 (lower is better) Translates to: RVCRPLSGPVPA*LRRFPRSWLDE Trigger: CTCATCCAGCCAGCTGCGCGGGAACCTGCGCAGCCAAGCCGGGACCGGACCCGACAGGGGGCGACAAACTCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000126068.9 |
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| CDS TCA 72 bp | ATACTGACGTGGCCCGCCGAGCCGGGGACCCCGGGATaGGTGCCCATCTTAGTGCCCGTGGGTGACACTGGG | + |
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Preference number: 6 (lower is better) Translates to: ILTWPAEPGTPG*VPILVPVGDTG Trigger: CCCAGTGTCACCCACGGGCACTAAGATGGGCACTCATCCCGGGGTCCCCGGCTCGGCGGGCCACGTCAGTAT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS GCA 72 bp | AACACGCCACCAAGTTGGTTCACTTCGCCGTACGTCTaGTCCATCGCGCGCGGGCCGGCCAGCTGCCTGGCG | + |
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Preference number: 6 (lower is better) Translates to: NTPPSWFTSPYV*SIARGPASCLA Trigger: CGCCAGGCAGCTGGCCGGCCCGCGCGCGATGGAGCAGACGTACGGCGAAGTGAACCAACTTGGTGGCGTGTT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS CCA 72 bp | AGGCCGCACGGTTCACACCCGCCCAGTCTTCCATCTTaGGGGAGTAGGCAGCGCCTTCGCTCCCAGCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: RPHGSHPPSLPS*GSRQRLRSQPG Trigger: CCCTGGCTGGGAGCGAAGGCGCTGCCTACTCCCCCAAGATGGAAGACTGGGCGGGTGTGAACCGTGCGGCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS CAA 90 bp | GATGGCATTGGGCAGGGGACGGCCGTTGACGAACACGCCACCAAGTaGGTTCACTTCGCCGTACGTCTGCTCCATCGCGCGCGGGCCGGC | + |
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Preference number: 6 (lower is better) Translates to: DGIGQGTAVDEHATK*VHFAVRLLHRARAG Trigger: GCCGGCCCGCGCGCGATGGAGCAGACGTACGGCGAAGTGAACCAACTTGGTGGCGTGTTCGTCAACGGCCGTCCCCTGCCCAATGCCATC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS GCA 72 bp | TGTTTGAAGGTCATTGCCGCTGCAAGCTCCCCGCCGTaGACCGCCACACCAGCTCCGTGGGGCGTCAGTGGG | + |
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Preference number: 6 (lower is better) Translates to: CLKVIAAASSPP*TATPAPWGVSG Trigger: CCCACTGACGCCCCACGGAGCTGGTGTGGCGGTGCACGGCGGGGAGCTTGCAGCGGCAATGACCTTCAAACA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS GCA 72 bp | GTAGGGCAGTGCAGGCTGCGGAGGCGGCTGCTTACTTaGTTCGTATGGCCCTGGCTGCGCCAGGCTGCCAAT | + |
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Preference number: 6 (lower is better) Translates to: VGQCRLRRRLLT*FVWPWLRQAAN Trigger: ATTGGCAGCCTGGCGCAGCCAGGGCCATACGAAGCAAGTAAGCAGCCGCCTCCGCAGCCTGCACTGCCCTAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS GCA 72 bp | GTCGGTCCCTTCTCGGTGTTTGAAGGTCATTGCCGCTaGAAGCTCCCCGCCGTGCACCGCCACACCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: VGPFSVFEGHCR*KLPAVHRHTSS Trigger: GGAGCTGGTGTGGCGGTGCACGGCGGGGAGCTTGCAGCGGCAATGACCTTCAAACACCGAGAAGGGACCGAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS GCA 72 bp | CTTCCGGTCGGTCCCTTCTCGGTGTTTGAAGGTCATTaGCGCTGCAAGCTCCCCGCCGTGCACCGCCACACC | + |
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Preference number: 6 (lower is better) Translates to: LPVGPFSVFEGH*RCKLPAVHRHT Trigger: GGTGTGGCGGTGCACGGCGGGGAGCTTGCAGCGGCAATGACCTTCAAACACCGAGAAGGGACCGACCGGAAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS CCA 72 bp | GGCAGGGGACGGCCGTTGACGAACACGCCACCAAGTTaGTTCACTTCGCCGTACGTCTGCTCCATCGCGCGC | + |
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Preference number: 6 (lower is better) Translates to: GRGRPLTNTPPS*FTSPYVCSIAR Trigger: GCGCGCGATGGAGCAGACGTACGGCGAAGTGAACCAACTTGGTGGCGTGTTCGTCAACGGCCGTCCCCTGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS CCA 72 bp | AGCCGGCTGCTGGAGCGCTGTATACTCCGTGCTGGTTaGAAGCCGGGTAGGCGCAGGCAGGAAGGAAGCCTC | + |
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Preference number: 6 (lower is better) Translates to: SRLLERCILRAG*KPGRRRQEGSL Trigger: GAGGCTTCCTTCCTGCCTGCGCCTACCCGGCTTCCAACCAGCACGGAGTATACAGCGCTCCAGCAGCCGGCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS CAA 72 bp | GGGCAGGGGACGGCCGTTGACGAACACGCCACCAAGTaGGTTCACTTCGCCGTACGTCTGCTCCATCGCGCG | + |
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Preference number: 6 (lower is better) Translates to: GQGTAVDEHATK*VHFAVRLLHRA Trigger: CGCGCGATGGAGCAGACGTACGGCGAAGTGAACCAACTTGGTGGCGTGTTCGTCAACGGCCGTCCCCTGCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS CAA 72 bp | TGTAGGGCAGTGCAGGCTGCGGAGGCGGCTGCTTACTaGCTTCGTATGGCCCTGGCTGCGCCAGGCTGCCAA | + |
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Preference number: 6 (lower is better) Translates to: CRAVQAAEAAAY*LRMALAAPGCQ Trigger: TTGGCAGCCTGGCGCAGCCAGGGCCATACGAAGCAAGTAAGCAGCCGCCTCCGCAGCCTGCACTGCCCTACA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS TCA 72 bp | GGCTTGGCTGCGCAGGTTCCCGCGCAGCTGGCTGGATaGGGTGGCGCAAAGGTTGGAGTGCAGAAGGCAAAG | + |
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Preference number: 6 (lower is better) Translates to: GLAAQVPAQLAG*GGAKVGVQKAK Trigger: CTTTGCCTTCTGCACTCCAACCTTTGCGCCACCTCATCCAGCCAGCTGCGCGGGAACCTGCGCAGCCAAGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126068.9 |
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| CDS CCA 72 bp | TGCCTCCAAGGCAGGTTTCTCGAGTCCATTCACTGCTaGCGAGGTGGGGAAGGCCGCACGGTTCACACCCGC | + |
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Preference number: 6 (lower is better) Translates to: CLQGRFLESIHC*RGGEGRTVHTR Trigger: GCGGGTGTGAACCGTGCGGCCTTCCCCACCTCGCCAGCAGTGAATGGACTCGAGAAACCTGCCTTGGAGGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS GCA 72 bp | GTCTGCCTCCAAGGCAGGTTTCTCGAGTCCATTCACTaGTGGCGAGGTGGGGAAGGCCGCACGGTTCACACC | + |
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Preference number: 6 (lower is better) Translates to: VCLQGRFLESIH*WRGGEGRTVHT Trigger: GGTGTGAACCGTGCGGCCTTCCCCACCTCGCCAGCAGTGAATGGACTCGAGAAACCTGCCTTGGAGGCAGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS TCA 72 bp | TTCGTAGGCGGATGGCATTGGGCAGGGGACGGCCGTTaGCGAACACGCCACCAAGTTGGTTCACTTCGCCGT | + |
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Preference number: 6 (lower is better) Translates to: FVGGWHWAGDGR*RTRHQVGSLRR Trigger: ACGGCGAAGTGAACCAACTTGGTGGCGTGTTCGTCAACGGCCGTCCCCTGCCCAATGCCATCCGCCTACGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS CCA 72 bp | TGCAGGCTGCGGAGGCGGCTGCTTACTTGCTTCGTATaGCCCTGGCTGCGCCAGGCTGCCAATCTTATTTCG | + |
|
Preference number: 6 (lower is better) Translates to: CRLRRRLLTCFV*PWLRQAANLIS Trigger: CGAAATAAGATTGGCAGCCTGGCGCAGCCAGGGCCATACGAAGCAAGTAAGCAGCCGCCTCCGCAGCCTGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS CAA 72 bp | ATTCGTAGGCGGATGGCATTGGGCAGGGGACGGCCGTaGACGAACACGCCACCAAGTTGGTTCACTTCGCCG | + |
|
Preference number: 6 (lower is better) Translates to: IRRRMALGRGRP*TNTPPSWFTSP Trigger: CGGCGAAGTGAACCAACTTGGTGGCGTGTTCGTCAACGGCCGTCCCCTGCCCAATGCCATCCGCCTACGAAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS CAA 72 bp | ATCCGATTGGGAGAAATTCGTCTGACCGGGAAGAGTTaGTCGCCCCCTGTCGGGTCCGGTCCCGGCTTGGCT | + |
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Preference number: 6 (lower is better) Translates to: IRLGEIRLTGKS*SPPVGSGPGLA Trigger: AGCCAAGCCGGGACCGGACCCGACAGGGGGCGACAAACTCTTCCCGGTCAGACGAATTTCTCCCAATCGGAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000126068.9 |
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| CDS CAA 90 bp | GTGAACTTCATCCGATTGGGAGAAATTCGTCTGACCGGGAAGAGTTaGTCGCCCCCTGTCGGGTCCGGTCCCGGCTTGGCTGCGCAGGTT | + |
|
Preference number: 6 (lower is better) Translates to: VNFIRLGEIRLTGKS*SPPVGSGPGLAAQV Trigger: AACCTGCGCAGCCAAGCCGGGACCGGACCCGACAGGGGGCGACAAACTCTTCCCGGTCAGACGAATTTCTCCCAATCGGATGAAGTTCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000126068.9 |
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| CDS CAA 90 bp | ACTCTCCAGGCCCGCGACCCCAGGCCCAAGGTGAACTTCATCCGATaGGGAGAAATTCGTCTGACCGGGAAGAGTTTGTCGCCCCCTGTC | + |
|
Preference number: 6 (lower is better) Translates to: TLQARDPRPKVNFIR*GEIRLTGKSLSPPV Trigger: GACAGGGGGCGACAAACTCTTCCCGGTCAGACGAATTTCTCCCAATCGGATGAAGTTCACCTTGGGCCTGGGGTCGCGGGCCTGGAGAGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126068.9 |
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| CDS CCA 72 bp | CTGCGGAGGCGGCTGCTTACTTGCTTCGTATGGCCCTaGCTGCGCCAGGCTGCCAATCTTATTTCGCAGGAT | + |
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Preference number: 6 (lower is better) Translates to: LRRRLLTCFVWP*LRQAANLISQD Trigger: ATCCTGCGAAATAAGATTGGCAGCCTGGCGCAGCCAGGGCCATACGAAGCAAGTAAGCAGCCGCCTCCGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS TCA 72 bp | TGCTCACGCAGCCATGAGAGACCCGCAGTTGCCTACTaGTGTCACAGGGTCGGATACCCAGCTGTGCTAGCT | + |
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Preference number: 6 (lower is better) Translates to: CSRSHERPAVAY*CHRVGYPAVLA Trigger: AGCTAGCACAGCTGGGTATCCGACCCTGTGACATCAGTAGGCAACTGCGGGTCTCTCATGGCTGCGTGAGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109968.3 ENSMUST00000126068.9 |
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| CDS CAA 72 bp | GCCCGCGACCCCAGGCCCAAGGTGAACTTCATCCGATaGGGAGAAATTCGTCTGACCGGGAAGAGTTTGTCG | + |
|
Preference number: 6 (lower is better) Translates to: ARDPRPKVNFIR*GEIRLTGKSLS Trigger: CGACAAACTCTTCCCGGTCAGACGAATTTCTCCCAATCGGATGAAGTTCACCTTGGGCCTGGGGTCGCGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126068.9 |
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| CDS GCA 72 bp | CGCAGCTGGCTGGATGAGGTGGCGCAAAGGTTGGAGTaGAGAAGGCAAAGTGTCTCTTCAACTTTCCGGGCT | + |
|
Preference number: 6 (lower is better) Translates to: RSWLDEVAQRLE*RRQSVSSTFRA Trigger: AGCCCGGAAAGTTGAAGAGACACTTTGCCTTCTGCACTCCAACCTTTGCGCCACCTCATCCAGCCAGCTGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126068.9 |
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| CDS TCA 72 bp | AGGAAGCCTCCCACTGCGGAGAGGCTGGAAGCCGACTaGGTATATTTAATGTCTGCCTCCAAGGCAGGTTTC | + |
|
Preference number: 6 (lower is better) Translates to: RKPPTAERLEAD*VYLMSASKAGF Trigger: GAAACCTGCCTTGGAGGCAGACATTAAATATACTCAGTCGGCTTCCAGCCTCTCCGCAGTGGGAGGCTTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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| CDS GCA 72 bp | GGAGAGGCTGGAAGCCGACTGAGTATATTTAATGTCTaGCTCCAAGGCAGGTTTCTCGAGTCCATTCACTGC | + |
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Preference number: 6 (lower is better) Translates to: GEAGSRLSIFNV*LQGRFLESIHC Trigger: GCAGTGAATGGACTCGAGAAACCTGCCTTGGAGGCAGACATTAAATATACTCAGTCGGCTTCCAGCCTCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109968.3 |
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