RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PATZ1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020453

Ensembl transcript IDs: ENSMUST00000057089.13, ENSMUST00000093402.12, ENSMUST00000094471.10, ENSMUST00000110043.8, ENSMUST00000134089.8, ENSMUST00000154319.2

Found 496 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GACTGCCACGTCGCAGGAGAAGGAGCCGTTGGCACTCTGTTTCTCTaGCGTCTTCAGGTCGCTGGCGTCGGAGAGGTCACCGTAGGAGTC +
Preference number: 1 (lower is better)
Translates to: DCHVAGEGAVGTLFL*RLQVAGVGEVTVGV
Trigger: GACTCCTACGGTGACCTCTCCGACGCCAGCGACCTGAAGACGCCAGAGAAACAGAGTGCCAACGGCTCCTTCTCCTGCGACGTGGCAGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR GCA 90 bp CTGTGGGGACACAGCATGTCTCACTTCCCTTCAGGCCCCATGGGCTaGTGGTCCACCTCAGGATCCACTAAAGATGATGCAAACGCTGAC +
Preference number: 1 (lower is better)
Translates to: LWGHSMSHFPSGPMG*WSTSGSTKDDANAD
Trigger: GTCAGCGTTTGCATCATCTTTAGTGGATCCTGAGGTGGACCAGCAGCCCATGGGGCCTGAAGGGAAGTGAGACATGCTGTGTCCCCACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR CCA 90 bp CTGTTCTGTGGGGACACAGCATGTCTCACTTCCCTTCAGGCCCCATaGGCTGCTGGTCCACCTCAGGATCCACTAAAGATGATGCAAACG +
Preference number: 1 (lower is better)
Translates to: LFCGDTACLTSLQAP*AAGPPQDPLKMMQT
Trigger: CGTTTGCATCATCTTTAGTGGATCCTGAGGTGGACCAGCAGCCCATGGGGCCTGAAGGGAAGTGAGACATGCTGTGTCCCCACAGAACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR CCA 90 bp CAATCAAGGTACTCGATGTCTCTACCTGAGGTTCTCCCACCTTCCTaGCTCTCAGCACCACGGAACCCTCTTCCTGATCAAACTGGAATT +
Preference number: 1 (lower is better)
Translates to: QSRYSMSLPEVLPPS*LSAPRNPLPDQTGI
Trigger: AATTCCAGTTTGATCAGGAAGAGGGTTCCGTGGTGCTGAGAGCCAGGAAGGTGGGAGAACCTCAGGTAGAGACATCGAGTACCTTGATTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR GCA 90 bp AATAAAAATCTCTCAGCTACAGAACCCAAAGACATCACTTCCCTCTaGATTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGG +
Preference number: 1 (lower is better)
Translates to: NKNLSATEPKDITSL*IHSIAQQSPAAVLW
Trigger: CCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAATGCAGAGGGAAGTGATGTCTTTGGGTTCTGTAGCTGAGAGATTTTTATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR GCA 90 bp AGAAACCAGAACTGGTACTGCCTCAGAGGCCGATGTAGTGCTTTCTaGCCTTGCCCCATATTGGGTCTCTCAGTATTTCTACAGAGAGTA +
Preference number: 1 (lower is better)
Translates to: RNQNWYCLRGRCSAF*PCPILGLSVFLQRV
Trigger: TACTCTCTGTAGAAATACTGAGAGACCCAATATGGGGCAAGGGCAGAAAGCACTACATCGGCCTCTGAGGCAGTACCAGTTCTGGTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR CCA 90 bp CTTAGAGTTGGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTaGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCTCAGAG +
Preference number: 1 (lower is better)
Translates to: LRVGVRTPITEHQKF*LQTTRETRTGTASE
Trigger: CTCTGAGGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCCAACTCTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR TCA 90 bp TTGCCCCATATTGGGTCTCTCAGTATTTCTACAGAGAGTATCAGATaGGAGTCTGTTTCTAAGACCACAGCAGGTGGGGTTAATGGAGGG +
Preference number: 1 (lower is better)
Translates to: LPHIGSLSISTESIR*ESVSKTTAGGVNGG
Trigger: CCCTCCATTAACCCCACCTGCTGTGGTCTTAGAAACAGACTCTCATCTGATACTCTCTGTAGAAATACTGAGAGACCCAATATGGGGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR GCA 90 bp ATAAAGTCTGATCAGGTCAATTCACATCACAAGGTCAACCTGGGCTaGTCAAGTGTAAGACAATCAAGGTACTCGATGTCTCTACCTGAG +
Preference number: 1 (lower is better)
Translates to: IKSDQVNSHHKVNLG*SSVRQSRYSMSLPE
Trigger: CTCAGGTAGAGACATCGAGTACCTTGATTGTCTTACACTTGAGCAGCCCAGGTTGACCTTGTGATGTGAATTGACCTGATCAGACTTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR GCA 90 bp TATGGTACACCTAAACAAAGTTTAATACTAACCCTAATGTGTGACTaGGGTTTACAAAGAGCTGTGTCACCTGGGGTAGCTTTCAGTAGC +
Preference number: 1 (lower is better)
Translates to: YGTPKQSLILTLMCD*GLQRAVSPGVAFSS
Trigger: GCTACTGAAAGCTACCCCAGGTGACACAGCTCTTTGTAAACCGCAGTCACACATTAGGGTTAGTATTAAACTTTGTTTAGGTGTACCATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR GCA 90 bp CACTTCCCTTCAGGCCCCATGGGCTGCTGGTCCACCTCAGGATCCACTAAAGATCTGCATTCACAGCATTaGTCAGCAGTCCCCAGCGGC +
Preference number: 2 (lower is better)
Translates to: HFPSGPMGCWSTSGSTKDLHSQH*SAVPSG
Trigger: GCCGCTGGGGACTGCTGAGCAATGCTGTGAATGCAG...ATCTTTAGTGGATCCTGAGGTGGACCAGCAGCCCATGGGGCCTGAAGGGAAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR GCA 90 bp ATTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGAGCGAGGCCCAAGAGTaGCTTAGAGTTGGGGTGAGG +
Preference number: 2 (lower is better)
Translates to: IHSIAQQSPAAVLWGHSMSEAQE*LRVGVR
Trigger: CCTCACCCCAACTCTAAGGCACTCTTGGGCCTCGCT...CATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR GCA 90 bp GAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTTCAGGCCCCATGGGCTaGTGGTCCACCTCAGGATCC +
Preference number: 2 (lower is better)
Translates to: EKTRANLRGHSLYGPWDASGPMG*WSTSGS
Trigger: GGATCCTGAGGTGGACCAGCAGCCCATGGGGCCTGA...AGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR GCA 90 bp GAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTTCAGGCCCCATGGGCTaGTGGTCCACCTCAGGATCC +
Preference number: 2 (lower is better)
Translates to: EDQGQPQRTLFVWSMGCCSGPMG*WSTSGS
Trigger: GGATCCTGAGGTGGACCAGCAGCCCATGGGGCCTGA...ACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR CCA 90 bp AGACTCCATTTTGTTTTTAGGGACTGCCACGTCGCAGGAGAAGGAGCCGTTGGCGCGTCTTCAGGTCGCTaGCGTCGGAGAGGTCACCGT +
Preference number: 2 (lower is better)
Translates to: RLHFVFRDCHVAGEGAVGASSGR*RRRGHR
Trigger: ACGGTGACCTCTCCGACGCCAGCGACCTGAAGACGC...GCCAACGGCTCCTTCTCCTGCGACGTGGCAGTCCCTAAAAACAAAATGGAGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR CAA 90 bp TCCATTTTGTTTTTAGGGACTGCCACGTCGCAGGAGAAGGAGCCGTaGGCACTCTGTTTCTCTGGCGTCTTCAGGTCGCTGGCGTCGGAG +
Preference number: 2 (lower is better)
Translates to: SILFLGTATSQEKEP*ALCFSGVFRSLASE
Trigger: CTCCGACGCCAGCGACCTGAAGACGCCAGAGAAACAGAGTGCCAACGGCTCCTTCTCCTGCGACGTGGCAGTCCCTAAAAACAAAATGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR TCA 90 bp GGAGAGCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGCATCTTGGAAGGATCTaGGAGTGCTGGGCAGGAACC +
Preference number: 2 (lower is better)
Translates to: GEHSERNMAPTGEGPSERHLGRI*ECWAGT
Trigger: GGTTCCTGCCCAGCACTCTCAGATCCTTCCAAGATG...CCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGCTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
3UTR-3UTR CCA 90 bp ATTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGCCCACATTCAGGGCATaGGTACTTCTTCTCCCCGTC +
Preference number: 2 (lower is better)
Translates to: IHSIAQQSPAAVLWGHSMPTFRA*VLLLPV
Trigger: GACGGGGAGAAGAAGTACCCATGCCCTGAATGTGGG...CATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR GCA 90 bp TTAGCTTCCAGCAGCTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTCTGCATTCACAGCATTaGTCAGCAGTCCCCAGCGGC +
Preference number: 2 (lower is better)
Translates to: LASSSSRRPGPTSEDTLCLHSQH*SAVPSG
Trigger: GCCGCTGGGGACTGCTGAGCAATGCTGTGAATGCAG...ACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAGCTGCTGGAAGCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR CAA 90 bp CCACATTCAGGGCATGGGTACTTCTTCTCCCCGTCAGACTCCATTTaGTTTTTAGGGACTGCCACGTCGCAGGAGAAGGAGCCGTTGGCA +
Preference number: 2 (lower is better)
Translates to: PHSGHGYFFSPSDSI*FLGTATSQEKEPLA
Trigger: TGCCAACGGCTCCTTCTCCTGCGACGTGGCAGTCCCTAAAAACAAAATGGAGTCTGACGGGGAGAAGAAGTACCCATGCCCTGAATGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR TCA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGAGTGTCCTCAGTAGGTaGGCTTGTCCTGGCAGTGAA +
Preference number: 2 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRSVLSR*ACPGSE
Trigger: TTCACTGCCAGGACAAGCTCACCTACTGAGGACACT...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CCA 90 bp CCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCCCAGCGGCTGTTCTGTaGGGACACAGCATGTCTCAC +
Preference number: 2 (lower is better)
Translates to: PQRTLFVWSMGCCRFLASPAAVL*GHSMSH
Trigger: GTGAGACATGCTGTGTCCCCACAGAACAGCCGCTGG...GGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR GCA 90 bp CTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCTCTGCATTCACAGCATTaGTCAGCAGTCCCCAGCGGC +
Preference number: 2 (lower is better)
Translates to: LRGHSLYGPWDAVGFWLPLHSQH*SAVPSG
Trigger: GCCGCTGGGGACTGCTGAGCAATGCTGTGAATGCAG...AGGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR GCA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGCGATGTAGTGCTTTCTaGCCTTGCCCCATATTGGGT +
Preference number: 2 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRRCSAF*PCPILG
Trigger: ACCCAATATGGGGCAAGGGCAGAAAGCACTACATCG...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR GCA 90 bp CTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCTAGCGAGGCCCAAGAGTaGCTTAGAGTTGGGGTGAGG +
Preference number: 2 (lower is better)
Translates to: LRGHSLYGPWDAVGFWLPSEAQE*LRVGVR
Trigger: CCTCACCCCAACTCTAAGGCACTCTTGGGCCTCGCT...AGGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR GCA 90 bp GAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTCCAAGGGCACGGACATaGACCTTCTGGATGTGTTTG +
Preference number: 2 (lower is better)
Translates to: EKTRANLRGHSLYGPWDAPRART*TFWMCL
Trigger: CAAACACATCCAGAAGGTGCATGTCCGTGCCCTTGG...AGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR GCA 90 bp GGAGAGCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTTGCTAGCTATCCTCTaGCAAAAGCAGGAGTCTCCA +
Preference number: 2 (lower is better)
Translates to: GEHSERNMAPTGEGPSERLLAIL*QKQESP
Trigger: TGGAGACTCCTGCTTTTGGCAGAGGATAGCTAGCAA...CCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGCTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
3UTR-3UTR CCA 90 bp GGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGGCACTCTGTTTCTCTaGCGTCTTCAGGTCGCTGGC +
Preference number: 2 (lower is better)
Translates to: GVRTPITEHQKFWLQTTRGTLFL*RLQVAG
Trigger: GCCAGCGACCTGAAGACGCCAGAGAAACAGAGTGCC...TCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR CCA 90 bp GAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCGGCACTCTGTTTCTCTaGCGTCTTCAGGTCGCTGGC +
Preference number: 2 (lower is better)
Translates to: EHQKFWLQTTRETRTGTAGTLFL*RLQVAG
Trigger: GCCAGCGACCTGAAGACGCCAGAGAAACAGAGTGCC...GGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR TCA 90 bp GAGTGTCTACCTGCTCTGTCAGTCCCTAAAGCCATGTATCACAATACAATACTGAGTTGGCAGCCCTGTTaGGGTAGGGGAGGGGAGAGG +
Preference number: 2 (lower is better)
Translates to: ECLPALSVPKAMYHNTILSWQPC*GRGGER
Trigger: CCTCTCCCCTCCCCTACCTCAACAGGGCTGCCAACT...CAGTATTGTATTGTGATACATGGCTTTAGGGACTGACAGAGCAGGTAGACACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
3UTR-3UTR GCA 90 bp GAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTCGATGTAGTGCTTTCTaGCCTTGCCCCATATTGGGT +
Preference number: 2 (lower is better)
Translates to: EKTRANLRGHSLYGPWDARCSAF*PCPILG
Trigger: ACCCAATATGGGGCAAGGGCAGAAAGCACTACATCG...AGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CCA 90 bp TCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTCAGGGAGGGGCAGGGATaGGGTTTAAAAATGAATAAA +
Preference number: 2 (lower is better)
Translates to: SQHCSAVPSGCSVGTQHVREGQG*GLKMNK
Trigger: TTTATTCATTTTTAAACCCCATCCCTGCCCCTCCCT...GACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CCA 90 bp ATTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGGAGCACCAGAAATTCTaGCTTCAGACCACTAGAGAA +
Preference number: 2 (lower is better)
Translates to: IHSIAQQSPAAVLWGHSMEHQKF*LQTTRE
Trigger: TTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTC...CATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR GCA 90 bp GGAATGAAAGAAGTGGGAGGGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTTTTGTTTTTAGGGACTaGCACGTCGCAGGAGAAGGA +
Preference number: 2 (lower is better)
Translates to: GMKEVGGTKTTKRGPRVPFVFRD*HVAGEG
Trigger: TCCTTCTCCTGCGACGTGGCAGTCCCTAAAAACAAA...AGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCCCTCCCACTTCTTTCATTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR GCA 90 bp TTAGCTTCCAGCAGCTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTTTTGTTTTTAGGGACTaGCACGTCGCAGGAGAAGGA +
Preference number: 2 (lower is better)
Translates to: LASSSSRRPGPTSEDTLCFVFRD*HVAGEG
Trigger: TCCTTCTCCTGCGACGTGGCAGTCCCTAAAAACAAA...ACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAGCTGCTGGAAGCTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR CCA 90 bp ATTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGAGGGAGGGGCAGGGATaGGGTTTAAAAATGAATAAA +
Preference number: 2 (lower is better)
Translates to: IHSIAQQSPAAVLWGHSMREGQG*GLKMNK
Trigger: TTTATTCATTTTTAAACCCCATCCCTGCCCCTCCCT...CATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CCA 90 bp AGCTTCCAGCAGCTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGCCCTTGCCCCATATTaGGTCTCTCAGTATTTCTAC +
Preference number: 2 (lower is better)
Translates to: SFQQLEKTRANLRGHSLYALAPY*VSQYFY
Trigger: GTAGAAATACTGAGAGACCCAATATGGGGCAAGGGC...ATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAGCTGCTGGAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CCA 90 bp GGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTTAGAGTTGGGGTGAGGACAGAGCACCAGAAATTCTaGCTTCAGACCACTAGAGAA +
Preference number: 2 (lower is better)
Translates to: GPKLPSEAQECLRVGVRTEHQKF*LQTTRE
Trigger: TTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTC...TGTCCTCACCCCAACTCTAAGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CCA 90 bp CCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCGCCCTTGCCCCATATTaGGTCTCTCAGTATTTCTAC +
Preference number: 2 (lower is better)
Translates to: PQRTLFVWSMGCCRFLASALAPY*VSQYFY
Trigger: GTAGAAATACTGAGAGACCCAATATGGGGCAAGGGC...GGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CCA 90 bp CCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCAGAGACATGTTCTGCTaGGGAGAGAAAGGTGAACCA +
Preference number: 2 (lower is better)
Translates to: PQRTLFVWSMGCCRFLASRDMFC*GEKGEP
Trigger: TGGTTCACCTTTCTCTCCCCAGCAGAACATGTCTCT...GGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR TCA 90 bp CTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCTGAGGACACCAATAACTaGGCACCAGAAATTCTGGCT +
Preference number: 2 (lower is better)
Translates to: LRGHSLYGPWDAVGFWLPEDTNN*APEILA
Trigger: AGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTC...AGGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR TCA 90 bp GTAAGACAATCAAGGTACTCGATGTCTCTACCTGAGGTTCTCCCACCTTCCTGGGAGGACACCAATAACTaGGCACCAGAAATTCTGGCT +
Preference number: 2 (lower is better)
Translates to: VRQSRYSMSLPEVLPPSWEDTNN*APEILA
Trigger: AGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTC...CCAGGAAGGTGGGAGAACCTCAGGTAGAGACATCGAGTACCTTGATTGTCTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR TCA 90 bp GAGTGTCTACCTGCTCTGTCAGTCCCTAAAGCCATGTATCACAATACAATACTGGAGCCCCAGTCAGTGTaGAAAGTGAGACCAGGGGAA +
Preference number: 2 (lower is better)
Translates to: ECLPALSVPKAMYHNTILEPQSV*KVRPGE
Trigger: TTCCCCTGGTCTCACTTTTCACACTGACTGGGGCTC...CAGTATTGTATTGTGATACATGGCTTTAGGGACTGACAGAGCAGGTAGACACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
3UTR-3UTR GCA 90 bp GAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCGACATCACTTCCCTCTaGATTCACAGCATTGCTCAG +
Preference number: 2 (lower is better)
Translates to: EHQKFWLQTTRETRTGTADITSL*IHSIAQ
Trigger: CTGAGCAATGCTGTGAATGCAGAGGGAAGTGATGTC...GGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CCA 90 bp AGGTTTCTGGCTTCCTTAAAAATAGTTGGCCATAAGAGGGTAGAGACCCTACTTCCAGCGGCTGTTCTGTaGGGACACAGCATGTCTCAC +
Preference number: 2 (lower is better)
Translates to: RFLASLKIVGHKRVETLLPAAVL*GHSMSH
Trigger: GTGAGACATGCTGTGTCCCCACAGAACAGCCGCTGG...AAGTAGGGTCTCTACCCTCTTATGGCCAACTATTTTTAAGGAAGCCAGAAACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR TCA 90 bp GAGTGTCTACCTGCTCTGTCAGTCCCTAAAGCCATGTATCACAATACAATACTGAGTCAGTGTGAAAAGTaGGACCAGGGGAAGGGACAC +
Preference number: 2 (lower is better)
Translates to: ECLPALSVPKAMYHNTILSQCEK*DQGKGH
Trigger: GTGTCCCTTCCCCTGGTCTCACTTTTCACACTGACT...CAGTATTGTATTGTGATACATGGCTTTAGGGACTGACAGAGCAGGTAGACACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
3UTR-3UTR GCA 90 bp GTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAACGATGTAGTGCTTTCTaGCCTTGCCCCATATTGGGT +
Preference number: 2 (lower is better)
Translates to: VRTPITEHQKFWLQTTRERCSAF*PCPILG
Trigger: ACCCAATATGGGGCAAGGGCAGAAAGCACTACATCG...TTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CCA 90 bp AGGTTTCTGGCTTCCTTAAAAATAGTTGGCCATAAGAGGGTAGAGACCCTACTTCCCACATTCAGGGCATaGGTACTTCTTCTCCCCGTC +
Preference number: 2 (lower is better)
Translates to: RFLASLKIVGHKRVETLLPTFRA*VLLLPV
Trigger: GACGGGGAGAAGAAGTACCCATGCCCTGAATGTGGG...AAGTAGGGTCTCTACCCTCTTATGGCCAACTATTTTTAAGGAAGCCAGAAACCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR GCA 90 bp TTGGGTCTCTCAGTATTTCTACAGAGAGTATCAGATGAGAGTCTGTTTCTAAGACTGCATTCACAGCATTaGTCAGCAGTCCCCAGCGGC +
Preference number: 2 (lower is better)
Translates to: LGLSVFLQRVSDESLFLRLHSQH*SAVPSG
Trigger: GCCGCTGGGGACTGCTGAGCAATGCTGTGAATGCAG...TCTTAGAAACAGACTCTCATCTGATACTCTCTGTAGAAATACTGAGAGACCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CCA 90 bp GTTGGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGGGAGGGGCAGGGATaGGGTTTAAAAATGAATAAA +
Preference number: 2 (lower is better)
Translates to: VGVRTPITEHQKFWLQTTREGQG*GLKMNK
Trigger: TTTATTCATTTTTAAACCCCATCCCTGCCCCTCCCT...AGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCCAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR CCA 72 bp GTCGCAGGAGAAGGAGCCGTTGGCACTCTGTTTCTCTaGCGTCTTCAGGTCGCTGGCGTCGGAGAGGTCACC +
Preference number: 3 (lower is better)
Translates to: VAGEGAVGTLFL*RLQVAGVGEVT
Trigger: GGTGACCTCTCCGACGCCAGCGACCTGAAGACGCCAGAGAAACAGAGTGCCAACGGCTCCTTCTCCTGCGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR CAA 90 bp CATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCCTCCAGCCAGCCATCATaGCCTCCACCTCTCCAGAGG +
Preference number: 3 (lower is better)
Translates to: HSERNMAPTGEGPSERWSSSQPS*PPPLQR
Trigger: CCTCTGGAGAGGTGGAGGCAATGATGGCTGGCTGGA...GGACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
3UTR-3UTR CAA 90 bp ATTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGCAGGAGAAGGAGCCGTaGGCACTCTGTTTCTCTGGC +
Preference number: 3 (lower is better)
Translates to: IHSIAQQSPAAVLWGHSMQEKEP*ALCFSG
Trigger: GCCAGAGAAACAGAGTGCCAACGGCTCCTTCTCCTG...CATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR GCA 72 bp GAGTGCTGGGCAGGAACCATCTTGCTAGCTATCCTCTaGCAAAAGCAGGAGTCTCCAGCCAGCCATCATTGC +
Preference number: 3 (lower is better)
Translates to: ECWAGTILLAIL*QKQESPASHHC
Trigger: GCAATGATGGCTGGCTGGAGACTCCTGCTTTTGGCAGAGGATAGCTAGCAAGATGGTTCCTGCCCAGCACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
3UTR GCA 72 bp CTCTCAGCTACAGAACCCAAAGACATCACTTCCCTCTaGATTCACAGCATTGCTCAGCAGTCCCCAGCGGCT +
Preference number: 3 (lower is better)
Translates to: LSATEPKDITSL*IHSIAQQSPAA
Trigger: AGCCGCTGGGGACTGCTGAGCAATGCTGTGAATGCAGAGGGAAGTGATGTCTTTGGGTTCTGTAGCTGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CAA 90 bp GGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGATCTGCATTCACAGCATaGCTCAGCAGTCCCCAGCGG +
Preference number: 3 (lower is better)
Translates to: GVRTPITEHQKFWLQTTRSAFTA*LSSPQR
Trigger: CCGCTGGGGACTGCTGAGCAATGCTGTGAATGCAGA...TCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CAA 90 bp AAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCTCAGAGGCCTCTGCATTCACAGCATaGCTCAGCAGTCCCCAGCGG +
Preference number: 3 (lower is better)
Translates to: KFWLQTTRETRTGTASEASAFTA*LSSPQR
Trigger: CCGCTGGGGACTGCTGAGCAATGCTGTGAATGCAGA...GGCCTCTGAGGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CAA 90 bp GTAAGACAATCAAGGTACTCGATGTCTCTACCTGAGGTTCTCCCACCTTCCTGGTCTGCATTCACAGCATaGCTCAGCAGTCCCCAGCGG +
Preference number: 3 (lower is better)
Translates to: VRQSRYSMSLPEVLPPSWSAFTA*LSSPQR
Trigger: CCGCTGGGGACTGCTGAGCAATGCTGTGAATGCAGA...CCAGGAAGGTGGGAGAACCTCAGGTAGAGACATCGAGTACCTTGATTGTCTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CAA 90 bp GTTGGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTTCTGCATTCACAGCATaGCTCAGCAGTCCCCAGCGG +
Preference number: 3 (lower is better)
Translates to: VGVRTPITEHQKFWLQTTSAFTA*LSSPQR
Trigger: CCGCTGGGGACTGCTGAGCAATGCTGTGAATGCAGA...AGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CAA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGCTCAGAGGACACTCTTaGTATGGTCCATGGGATGCT +
Preference number: 3 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRLRGHS*YGPWDA
Trigger: AGCATCCCATGGACCATACAAAGAGTGTCCTCTGAG...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CAA 90 bp AGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGCCGTCAGACTCCATTTaGTTTTTAGGGACTGCCACG +
Preference number: 3 (lower is better)
Translates to: RRPGPTSEDTLCMVHGMLPSDSI*FLGTAT
Trigger: CGTGGCAGTCCCTAAAAACAAAATGGAGTCTGACGG...CAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR CCA 72 bp GAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATaGTCCATGGGATGCTGTAGGTTTCTGGCTTCCTTA +
Preference number: 3 (lower is better)
Translates to: EDQGQPQRTLFV*SMGCCRFLASL
Trigger: TAAGGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR CCA 72 bp GGACTTAGAACGGAAGAAGCTCCCACATTCAGGGCATaGGTACTTCTTCTCCCCGTCAGACTCCATTTTGTT +
Preference number: 3 (lower is better)
Translates to: GLRTEEAPTFRA*VLLLPVRLHFV
Trigger: AACAAAATGGAGTCTGACGGGGAGAAGAAGTACCCATGCCCTGAATGTGGGAGCTTCTTCCGTTCTAAGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR-3UTR CAA 90 bp GAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCTGCCCTTGCCCCATATaGGGTCTCTCAGTATTTCTA +
Preference number: 3 (lower is better)
Translates to: EHQKFWLQTTRETRTGTACPCPI*GLSVFL
Trigger: TAGAAATACTGAGAGACCCAATATGGGGCAAGGGCA...GGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR TCA 72 bp AGAACTGGAATTTGGGGTAGAAGTGTCCTCAGTAGGTaGGCTTGTCCTGGCAGTGAAATGTTAGCTTCCAGC +
Preference number: 3 (lower is better)
Translates to: RTGIWGRSVLSR*ACPGSEMLASS
Trigger: GCTGGAAGCTAACATTTCACTGCCAGGACAAGCTCACCTACTGAGGACACTTCTACCCCAAATTCCAGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR CCA 72 bp GAGGCCGATGTAGTGCTTTCTGCCCTTGCCCCATATTaGGTCTCTCAGTATTTCTACAGAGAGTATCAGATG +
Preference number: 3 (lower is better)
Translates to: EADVVLSALAPY*VSQYFYREYQM
Trigger: CATCTGATACTCTCTGTAGAAATACTGAGAGACCCAATATGGGGCAAGGGCAGAAAGCACTACATCGGCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CAA 90 bp CCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTCTCAGAGGACACTCTTaGTATGGTCCATGGGATGCT +
Preference number: 3 (lower is better)
Translates to: PITEHQKFWLQTTRETRTLRGHS*YGPWDA
Trigger: AGCATCCCATGGACCATACAAAGAGTGTCCTCTGAG...AGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
3UTR-3UTR CAA 90 bp ACGCTGACTGAACAATCTGAAATCCAAAGGACTCAAGAAGAGACATGTTCTGCTCCGTCAGACTCCATTTaGTTTTTAGGGACTGCCACG +
Preference number: 3 (lower is better)
Translates to: TLTEQSEIQRTQEETCSAPSDSI*FLGTAT
Trigger: CGTGGCAGTCCCTAAAAACAAAATGGAGTCTGACGG...AGCAGAACATGTCTCTTCTTGAGTCCTTTGGATTTCAGATTGTTCAGTCAGCGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
3UTR TCA 72 bp ATTGGGTCTCTCAGTATTTCTACAGAGAGTATCAGATaGGAGTCTGTTTCTAAGACCACAGCAGGTGGGGTT +
Preference number: 3 (lower is better)
Translates to: IGSLSISTESIR*ESVSKTTAGGV
Trigger: AACCCCACCTGCTGTGGTCTTAGAAACAGACTCTCATCTGATACTCTCTGTAGAAATACTGAGAGACCCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp AAGCAGGAGTCTCCAGCCAGCCATCATTGCCTCCACCTCTCCAGAGGGACCCAGGCAGGTTGGCCTTCCTaGGGCGTCCCCGGCCTCGCT +
Preference number: 4 (lower is better)
Translates to: KQESPASHHCLHLSRGTQAGWPS*GVPGLA
Trigger: AGCGAGGCCGGGGACGCCCCAGGAAGGCCAACCTGC...CTGGGTCCCTCTGGAGAGGTGGAGGCAATGATGGCTGGCTGGAGACTCCTGCTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp AAGCAGGAGTCTCCAGCCAGCCATCATTGCCTCCACCTCTCCAGAGGGACCCAGGCCAGTACGGCGCGGTaGGCTGGGAAGCTCTCGTCG +
Preference number: 4 (lower is better)
Translates to: KQESPASHHCLHLSRGTQASTAR*AGKLSS
Trigger: CGACGAGAGCTTCCCAGCGCACCGCGCCGTACTGGC...CTGGGTCCCTCTGGAGAGGTGGAGGCAATGATGGCTGGCTGGAGACTCCTGCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp GGAGAGCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGGGGGCGGCAGGCCGCTaGTGCTCCCAACCCACACCT +
Preference number: 4 (lower is better)
Translates to: GEHSERNMAPTGEGPSERGAAGR*CSQPTP
Trigger: AGGTGTGGGTTGGGAGCAGCAGCGGCCTGCCGCCCC...CCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGCTCTCC
63% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp TCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTCCAGCACCTGTGGCCCTaGCAGCCTCCTCCTCGGGCT +
Preference number: 4 (lower is better)
Translates to: SQHCSAVPSGCSVGTQHVQHLWP*QPPPRA
Trigger: AGCCCGAGGAGGAGGCTGCCAGGGCCACAGGTGCTG...GACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp AAGCAGGAGTCTCCAGCCAGCCATCATTGCCTCCACCTCTCCAGAGGGACCCAGTGGAGTCCAGCAGGTTaGCCTTCCTGGGGCGTCCCC +
Preference number: 4 (lower is better)
Translates to: KQESPASHHCLHLSRGTQWSPAG*PSWGVP
Trigger: GGGGACGCCCCAGGAAGGCCAACCTGCTGGACTCCA...CTGGGTCCCTCTGGAGAGGTGGAGGCAATGATGGCTGGCTGGAGACTCCTGCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR TCA 90 bp GATTCCCCCTCCCGCCCAATTAAGAGGAGGGTGACTGGGAGCCCCAGTCAGTGTGTGGGCGAAAGAGCATaGTATCAGCCCGGGCAGGGG +
Preference number: 4 (lower is better)
Translates to: DSPSRPIKRRVTGSPSQCVGERA*YQPGQG
Trigger: CCCCTGCCCGGGCTGATATCATGCTCTTTCGCCCAC...ACACTGACTGGGGCTCCCAGTCACCCTCCTCTTAATTGGGCGGGAGGGGGAATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR TCA 90 bp AAGCAGGAGTCTCCAGCCAGCCATCATTGCCTCCACCTCTCCAGAGGGACCCAGCCAACTGGAGGCTTGTaGCGCCGTGCTGGGCCTCAT +
Preference number: 4 (lower is better)
Translates to: KQESPASHHCLHLSRGTQPTGGL*RRAGPH
Trigger: ATGAGGCCCAGCACGGCGTCACAAGCCTCCAGTTGG...CTGGGTCCCTCTGGAGAGGTGGAGGCAATGATGGCTGGCTGGAGACTCCTGCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp ATTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTCTCCAGTTCGCGGCTaGCTCCAGCTCCGCCGCCTG +
Preference number: 4 (lower is better)
Translates to: IHSIAQQSPAAVLWGHSMSPVRG*LQLRRL
Trigger: CAGGCGGCGGAGCTGGAGGCAGCCGCGAACTGGAGA...CATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GGAGAGCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTCTCCAGTTCGCGGCTaGCTCCAGCTCCGCCGCCTG +
Preference number: 4 (lower is better)
Translates to: GEHSERNMAPTGEGPSERSPVRG*LQLRRL
Trigger: CAGGCGGCGGAGCTGGAGGCAGCCGCGAACTGGAGA...CCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGCTCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp GGCACTCTGTTTCTCTGGCGTCTTCAGGTCGCTGGCGTCGGAGAGGTCACCGTATGCTGGGCCTCATGTTaGCGGAGCCGGTTGGCGTCA +
Preference number: 4 (lower is better)
Translates to: GTLFLWRLQVAGVGEVTVCWASC*RSRLAS
Trigger: TGACGCCAACCGGCTCCGGCAACATGAGGCCCAGCA...TACGGTGACCTCTCCGACGCCAGCGACCTGAAGACGCCAGAGAAACAGAGTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR GCA 90 bp GCCCAGGTCCCCCAAGGGACCCCCAAGGGCACGGACATGCACCTTCTGGATGTGGTGGTCTGCCATGTATaGGGCCCGCAAGTACTTTCC +
Preference number: 4 (lower is better)
Translates to: AQVPQGTPKGTDMHLLDVVVCHV*GPQVLS
Trigger: GGAAAGTACTTGCGGGCCGCATACATGGCAGACCAC...CACATCCAGAAGGTGCATGTCCGTGCCCTTGGGGGTCCCTTGGGGGACCTGGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR GCA 90 bp CATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCCGCGGCAGGCCGCTGCTaGTCCCAACCCACACCTGAC +
Preference number: 4 (lower is better)
Translates to: HSERNMAPTGEGPSERWSAAGRC*SQPTPD
Trigger: GTCAGGTGTGGGTTGGGAGCAGCAGCGGCCTGCCGC...GGACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp GATTCCCCCTCCCGCCCAATTAAGAGGAGGGTGACTGGGAGCCCCAGTCAGTGTTCCGGCTCCTTTTTCTaGGGCCATCGGGGTCCTCGG +
Preference number: 4 (lower is better)
Translates to: DSPSRPIKRRVTGSPSQCSGSFF*GHRGPR
Trigger: CCGAGGACCCCGATGGCCCCAGAAAAAGGAGCCGGA...ACACTGACTGGGGCTCCCAGTCACCCTCCTCTTAATTGGGCGGGAGGGGGAATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp GCCCAGGTCCCCCAAGGGACCCCCAAGGGCACGGACATGCACCTTCTGGATGTGGACCTCGGTTACAGATaGTACAGAAGTTGCTGGGCC +
Preference number: 4 (lower is better)
Translates to: AQVPQGTPKGTDMHLLDVDLGYR*YRSCWA
Trigger: GGCCCAGCAACTTCTGTAGCATCTGTAACCGAGGTC...CACATCCAGAAGGTGCATGTCCGTGCCCTTGGGGGTCCCTTGGGGGACCTGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp CAGAACTGGTACTGCCTCAGAGGCCGATGTAGTGCTTTCTGCCCTTGCCCCATACAGCACCTGTGGCCCTaGCAGCCTCCTCCTCGGGCT +
Preference number: 4 (lower is better)
Translates to: QNWYCLRGRCSAFCPCPIQHLWP*QPPPRA
Trigger: AGCCCGAGGAGGAGGCTGCCAGGGCCACAGGTGCTG...TATGGGGCAAGGGCAGAAAGCACTACATCGGCCTCTGAGGCAGTACCAGTTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp ATTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGGGGGTCCAGCCACCATaGGCAATCTGTCCACCCCGG +
Preference number: 4 (lower is better)
Translates to: IHSIAQQSPAAVLWGHSMGVQPP*AICPPR
Trigger: CCGGGGTGGACAGATTGCCCATGGTGGCTGGACCCC...CATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp ATTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGGTGGGCGAAAGAGCATaGTATCAGCCCGGGCAGGGG +
Preference number: 4 (lower is better)
Translates to: IHSIAQQSPAAVLWGHSMVGERA*YQPGQG
Trigger: CCCCTGCCCGGGCTGATATCATGCTCTTTCGCCCAC...CATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp CACTTCCCTTCAGGCCCCATGGGCTGCTGGTCCACCTCAGGATCCACTAAAGATGTGGGCGAAAGAGCATaGTATCAGCCCGGGCAGGGG +
Preference number: 4 (lower is better)
Translates to: HFPSGPMGCWSTSGSTKDVGERA*YQPGQG
Trigger: CCCCTGCCCGGGCTGATATCATGCTCTTTCGCCCAC...ATCTTTAGTGGATCCTGAGGTGGACCAGCAGCCCATGGGGCCTGAAGGGAAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR CCA 90 bp CTACAGGGGAGGGGCCTTCAGAAAGGTGGTCCTTCCTATCTCTACTTGAGAGCTCAGCACCTGTGGCCCTaGCAGCCTCCTCCTCGGGCT +
Preference number: 4 (lower is better)
Translates to: LQGRGLQKGGPSYLYLRAQHLWP*QPPPRA
Trigger: AGCCCGAGGAGGAGGCTGCCAGGGCCACAGGTGCTG...AGCTCTCAAGTAGAGATAGGAAGGACCACCTTTCTGAAGGCCCCTCCCCTGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp GAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTCAGCACCTGTGGCCCTaGCAGCCTCCTCCTCGGGCT +
Preference number: 4 (lower is better)
Translates to: EKTRANLRGHSLYGPWDAQHLWP*QPPPRA
Trigger: AGCCCGAGGAGGAGGCTGCCAGGGCCACAGGTGCTG...AGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp CCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCGCAGGTTGGCCTTCCTaGGGCGTCCCCGGCCTCGCT +
Preference number: 4 (lower is better)
Translates to: PQRTLFVWSMGCCRFLASAGWPS*GVPGLA
Trigger: AGCGAGGCCGGGGACGCCCCAGGAAGGCCAACCTGC...GGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp TCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTCCCCGCACAGGCCACATaGAAGGATGCCTGCTTCCCT +
Preference number: 4 (lower is better)
Translates to: SQHCSAVPSGCSVGTQHVPAQAT*KDACFP
Trigger: AGGGAAGCAGGCATCCTTCCATGTGGCCTGTGCGGG...GACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp AAGCAGGAGTCTCCAGCCAGCCATCATTGCCTCCACCTCTCCAGAGGGACCCAGGGCTTCTCCCCCGAGTaGGAAAGCTTATGCCGGTTG +
Preference number: 4 (lower is better)
Translates to: KQESPASHHCLHLSRGTQGFSPE*ESLCRL
Trigger: CAACCGGCATAAGCTTTCCCACTCGGGGGAGAAGCC...CTGGGTCCCTCTGGAGAGGTGGAGGCAATGATGGCTGGCTGGAGACTCCTGCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp GCCCAGGTCCCCCAAGGGACCCCCAAGGGCACGGACATGCACCTTCTGGATGTGTACTTTCCACACACCTaGCAGGGCACCTTGTCTTCA +
Preference number: 4 (lower is better)
Translates to: AQVPQGTPKGTDMHLLDVYFPHT*QGTLSS
Trigger: TGAAGACAAGGTGCCCTGCCAGGTGTGTGGAAAGTA...CACATCCAGAAGGTGCATGTCCGTGCCCTTGGGGGTCCCTTGGGGGACCTGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp GGCACTCTGTTTCTCTGGCGTCTTCAGGTCGCTGGCGTCGGAGAGGTCACCGTATGTTGCCATAGGTCCTaGCGCAGTGGAACGCTGCTC +
Preference number: 4 (lower is better)
Translates to: GTLFLWRLQVAGVGEVTVCCHRS*RSGTLL
Trigger: GAGCAGCGTTCCACTGCGCCAGGACCTATGGCAACA...TACGGTGACCTCTCCGACGCCAGCGACCTGAAGACGCCAGAGAAACAGAGTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR TCA 90 bp GGAGAGCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGACTTGGCGGCCGTCATaGGCTCGGGGAAGCTCTCTA +
Preference number: 4 (lower is better)
Translates to: GEHSERNMAPTGEGPSERTWRPS*ARGSSL
Trigger: TAGAGAGCTTCCCCGAGCTCATGACGGCCGCCAAGT...CCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGCTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR TCA 90 bp GGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTTAGAGTTGGGGTGAGGACAGGCACCTTGTCTTCATaGCAGGCCAGGTGGGAGCGC +
Preference number: 4 (lower is better)
Translates to: GPKLPSEAQECLRVGVRTGTLSS*QARWER
Trigger: GCGCTCCCACCTGGCCTGTCATGAAGACAAGGTGCC...TGTCCTCACCCCAACTCTAAGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR TCA 90 bp CAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCCTTCCCTGGGCAAAGTCCCATaGTGGCAGGTCGCTAGGAAG +
Preference number: 4 (lower is better)
Translates to: QKGTWRLQGRGLQKGGPSLGKVP*WQVARK
Trigger: CTTCCTAGCGACCTGCCATCATGGGACTTTGCCCAG...GGAAGGACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp CCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCGCCAGTACGGCGCGGTaGGCTGGGAAGCTCTCGTCG +
Preference number: 4 (lower is better)
Translates to: PQRTLFVWSMGCCRFLASASTAR*AGKLSS
Trigger: CGACGAGAGCTTCCCAGCGCACCGCGCCGTACTGGC...GGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp TCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTCACATGGAAGGATGCCTaGTTCCCTCAAGCCCCCTGG +
Preference number: 4 (lower is better)
Translates to: SQHCSAVPSGCSVGTQHVTWKDA*FPQAPW
Trigger: CCAGGGGGCTTGAGGGAAGCAGGCATCCTTCCATGT...GACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCGGCCACATGGAAGGATaGCTGCTTCCCTCAAGCCCC +
Preference number: 4 (lower is better)
Translates to: AFRKEHGAYRGGAFRKVVGHMEG*LLPSSP
Trigger: GGGGCTTGAGGGAAGCAGGCATCCTTCCATGTGGCC...GACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp CAGAACTGGTACTGCCTCAGAGGCCGATGTAGTGCTTTCTGCCCTTGCCCCATATGCTGGGCCTCATGTTaGCGGAGCCGGTTGGCGTCA +
Preference number: 4 (lower is better)
Translates to: QNWYCLRGRCSAFCPCPICWASC*RSRLAS
Trigger: TGACGCCAACCGGCTCCGGCAACATGAGGCCCAGCA...TATGGGGCAAGGGCAGAAAGCACTACATCGGCCTCTGAGGCAGTACCAGTTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp CAGAACTGGTACTGCCTCAGAGGCCGATGTAGTGCTTTCTGCCCTTGCCCCATATCAGGCCCCATGGGCTaGTGGTCCACCTCAGGATCC +
Preference number: 4 (lower is better)
Translates to: QNWYCLRGRCSAFCPCPISGPMG*WSTSGS
Trigger: GGATCCTGAGGTGGACCAGCAGCCCATGGGGCCTGA...TATGGGGCAAGGGCAGAAAGCACTACATCGGCCTCTGAGGCAGTACCAGTTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGGGCGCAGTGGAACGCTaGTCCCCCATTCAGGATGGG +
Preference number: 4 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRGAVER*SPIQDG
Trigger: CCCATCCTGAATGGGGGAGCAGCGTTCCACTGCGCC...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp CACTTCCCTTCAGGCCCCATGGGCTGCTGGTCCACCTCAGGATCCACTAAAGATCCGCCGTCGCCTAACTaGGCGCTGAACACAGACTCA +
Preference number: 4 (lower is better)
Translates to: HFPSGPMGCWSTSGSTKDPPSPN*ALNTDS
Trigger: TGAGTCTGTGTTCAGCGCCCAGTTAGGCGACGGCGG...ATCTTTAGTGGATCCTGAGGTGGACCAGCAGCCCATGGGGCCTGAAGGGAAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR CCA 90 bp CTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCTGCAGGTTGGCCTTCCTaGGGCGTCCCCGGCCTCGCT +
Preference number: 4 (lower is better)
Translates to: LRGHSLYGPWDAVGFWLPAGWPS*GVPGLA
Trigger: AGCGAGGCCGGGGACGCCCCAGGAAGGCCAACCTGC...AGGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTTGGAGTCCAGCAGGTTaGCCTTCCTGGGGCGTCCCC +
Preference number: 4 (lower is better)
Translates to: EDQGQPQRTLFVWSMGCCWSPAG*PSWGVP
Trigger: GGGGACGCCCCAGGAAGGCCAACCTGCTGGACTCCA...ACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp CATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCCCCCGCACAGGCCACATaGAAGGATGCCTGCTTCCCT +
Preference number: 4 (lower is better)
Translates to: HSERNMAPTGEGPSERWSPAQAT*KDACFP
Trigger: AGGGAAGCAGGCATCCTTCCATGTGGCCTGTGCGGG...GGACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp GGCACTCTGTTTCTCTGGCGTCTTCAGGTCGCTGGCGTCGGAGAGGTCACCGTACTGTGCTTCTTCAGGTaGTCTGCCATGTATGCGGCC +
Preference number: 4 (lower is better)
Translates to: GTLFLWRLQVAGVGEVTVLCFFR*SAMYAA
Trigger: GGCCGCATACATGGCAGACCACCTGAAGAAGCACAG...TACGGTGACCTCTCCGACGCCAGCGACCTGAAGACGCCAGAGAAACAGAGTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp GGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTTAGAGTTGGGGTGAGGACAGCGTCTTCAGGTCGCTaGCGTCGGAGAGGTCACCGT +
Preference number: 4 (lower is better)
Translates to: GPKLPSEAQECLRVGVRTASSGR*RRRGHR
Trigger: ACGGTGACCTCTCCGACGCCAGCGACCTGAAGACGC...TGTCCTCACCCCAACTCTAAGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GGCACTCTGTTTCTCTGGCGTCTTCAGGTCGCTGGCGTCGGAGAGGTCACCGTATTCAGGATGGGTTCCTaGTGCCTGGAGACCTCGGTT +
Preference number: 4 (lower is better)
Translates to: GTLFLWRLQVAGVGEVTVFRMGS*CLETSV
Trigger: AACCGAGGTCTCCAGGCACCAGGAACCCATCCTGAA...TACGGTGACCTCTCCGACGCCAGCGACCTGAAGACGCCAGAGAAACAGAGTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR TCA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGACTTGGCGGCCGTCATaGGCTCGGGGAAGCTCTCTA +
Preference number: 4 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRTWRPS*ARGSSL
Trigger: TAGAGAGCTTCCCCGAGCTCATGACGGCCGCCAAGT...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp GCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCGTACGGTTTGCCCACTaGCCCATCATGGGACCTCAC +
Preference number: 4 (lower is better)
Translates to: AFRKEHGAYRGGAFRKVVVRFAH*PIMGPH
Trigger: GTGAGGTCCCATGATGGGTCAGTGGGCAAACCGTAC...GACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR TCA 90 bp GGAGAGCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGGTATCCTGGTGGGGCTaGGCAGAAGAGCGCATTGCT +
Preference number: 4 (lower is better)
Translates to: GEHSERNMAPTGEGPSERVSWWG*AEERIA
Trigger: AGCAATGCGCTCTTCTGCTCAGCCCCACCAGGATAC...CCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGCTCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp TTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTACTCAAAGTACTCGCTaGAGGCAGCCAGTACGGCGC +
Preference number: 4 (lower is better)
Translates to: FTALLSSPQRLFCGDTACTQSTR*RQPVRR
Trigger: GCGCCGTACTGGCTGCCTGCAGCGAGTACTTTGAGT...ACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGATCTCCAGTTCGCGGCTaGCTCCAGCTCCGCCGCCTG +
Preference number: 4 (lower is better)
Translates to: GVRTPITEHQKFWLQTTRSPVRG*LQLRRL
Trigger: CAGGCGGCGGAGCTGGAGGCAGCCGCGAACTGGAGA...TCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCTCTCCAGTTCGCGGCTaGCTCCAGCTCCGCCGCCTG +
Preference number: 4 (lower is better)
Translates to: EHQKFWLQTTRETRTGTASPVRG*LQLRRL
Trigger: CAGGCGGCGGAGCTGGAGGCAGCCGCGAACTGGAGA...GGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp TTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTGTTGGCTGCCATGGCTaGCCCGTTGGTCATGTCCAA +
Preference number: 4 (lower is better)
Translates to: FTALLSSPQRLFCGDTACVGCHG*PVGHVQ
Trigger: TTGGACATGACCAACGGGGCAGCCATGGCAGCCAAC...ACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTTAGAGTTGGGGTGAGGACAGGCCACATGGAAGGATaGCTGCTTCCCTCAAGCCCC +
Preference number: 4 (lower is better)
Translates to: GPKLPSEAQECLRVGVRTGHMEG*LLPSSP
Trigger: GGGGCTTGAGGGAAGCAGGCATCCTTCCATGTGGCC...TGTCCTCACCCCAACTCTAAGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTTGCTGGGCCTCATGTTaGCGGAGCCGGTTGGCGTCA +
Preference number: 4 (lower is better)
Translates to: EKTRANLRGHSLYGPWDACWASC*RSRLAS
Trigger: TGACGCCAACCGGCTCCGGCAACATGAGGCCCAGCA...AGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GGGCCCAGGTCCCCCAAGGGACCCCCAAGGGCACGGACATGCACCTTCTGGATGTCAGAAGTGTGCACCTaGTTGATATGTCCATTCAAG +
Preference number: 4 (lower is better)
Translates to: GPRSPKGPPRARTCTFWMSEVCT*LICPFK
Trigger: CTTGAATGGACATATCAAGCAGGTGCACACTTCTGA...CATCCAGAAGGTGCATGTCCGTGCCCTTGGGGGTCCCTTGGGGGACCTGGGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR GCA 90 bp CAGAACTGGTACTGCCTCAGAGGCCGATGTAGTGCTTTCTGCCCTTGCCCCATACTGGGCCCCTCACTGTaGTTCTTCAGGTGGTCTGCC +
Preference number: 4 (lower is better)
Translates to: QNWYCLRGRCSAFCPCPILGPSL*FFRWSA
Trigger: GGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAG...TATGGGGCAAGGGCAGAAAGCACTACATCGGCCTCTGAGGCAGTACCAGTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR GCA 90 bp GATTCCCCCTCCCGCCCAATTAAGAGGAGGGTGACTGGGAGCCCCAGTCAGTGTAGCAGAAGAGCGCATTaGTGGAGTGTGCTGGACTCA +
Preference number: 4 (lower is better)
Translates to: DSPSRPIKRRVTGSPSQCSRRAH*WSVLDS
Trigger: TGAGTCCAGCACACTCCAGCAATGCGCTCTTCTGCT...ACACTGACTGGGGCTCCCAGTCACCCTCCTCTTAATTGGGCGGGAGGGGGAATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp GAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGGCGCAGTGGAACGCTaGTCCCCCATTCAGGATGGG +
Preference number: 4 (lower is better)
Translates to: EKTRANLRGHSLYGPWDAGAVER*SPIQDG
Trigger: CCCATCCTGAATGGGGGAGCAGCGTTCCACTGCGCC...AGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp CATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTCTCACTTCCATGGCTGCCCCGTTaGTCATGTCCAAAGGGAAGC +
Preference number: 4 (lower is better)
Translates to: HCSAVPSGCSVGTQHVSLPWLPR*SCPKGS
Trigger: GCTTCCCTTTGGACATGACCAACGGGGCAGCCATGG...AAGTGAGACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR CCA 90 bp GGAGAGCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGGGAGAAGTCAGTAGTTaGGGGGATAGGGGTCCAGCC +
Preference number: 4 (lower is better)
Translates to: GEHSERNMAPTGEGPSERGEVSS*GDRGPA
Trigger: GGCTGGACCCCTATCCCCCCAACTACTGACTTCTCC...CCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGCTCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp TTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTGGAGAAGTCAGTAGTTaGGGGGATAGGGGTCCAGCC +
Preference number: 4 (lower is better)
Translates to: FTALLSSPQRLFCGDTACGEVSS*GDRGPA
Trigger: GGCTGGACCCCTATCCCCCCAACTACTGACTTCTCC...ACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp TCAGATGAGAGTCTGTTTCTAAGACCACAGCAGGTGGGGTTAATGGAGGGAGGGTGGAGTCCAGCAGGTTaGCCTTCCTGGGGCGTCCCC +
Preference number: 4 (lower is better)
Translates to: SDESLFLRPQQVGLMEGGWSPAG*PSWGVP
Trigger: GGGGACGCCCCAGGAAGGCCAACCTGCTGGACTCCA...CCCTCCCTCCATTAACCCCACCTGCTGTGGTCTTAGAAACAGACTCTCATCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp CCCATGGGCTGCTGGTCCACCTCAGGATCCACTAAAGATGATGCAAACGCTGACCCCGCACAGGCCACATaGAAGGATGCCTGCTTCCCT +
Preference number: 4 (lower is better)
Translates to: PMGCWSTSGSTKDDANADPAQAT*KDACFP
Trigger: AGGGAAGCAGGCATCCTTCCATGTGGCCTGTGCGGG...GTCAGCGTTTGCATCATCTTTAGTGGATCCTGAGGTGGACCAGCAGCCCATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR CCA 90 bp GATTCCCCCTCCCGCCCAATTAAGAGGAGGGTGACTGGGAGCCCCAGTCAGTGTAGAAGAGCGCATTGCTaGAGTGTGCTGGACTCAGGT +
Preference number: 4 (lower is better)
Translates to: DSPSRPIKRRVTGSPSQCRRAHC*SVLDSG
Trigger: ACCTGAGTCCAGCACACTCCAGCAATGCGCTCTTCT...ACACTGACTGGGGCTCCCAGTCACCCTCCTCTTAATTGGGCGGGAGGGGGAATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp CACTTCCCTTCAGGCCCCATGGGCTGCTGGTCCACCTCAGGATCCACTAAAGATCTCCCCCATTCAGGATaGGTTCCTGGTGCCTGGAGA +
Preference number: 4 (lower is better)
Translates to: HFPSGPMGCWSTSGSTKDLPHSG*VPGAWR
Trigger: TCTCCAGGCACCAGGAACCCATCCTGAATGGGGGAG...ATCTTTAGTGGATCCTGAGGTGGACCAGCAGCCCATGGGGCCTGAAGGGAAGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp AGCTTCCAGCAGCTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATTGGTGCCTGGAGACCTaGGGAAGGGGAACACCGTGG +
Preference number: 4 (lower is better)
Translates to: SFQQLEKTRANLRGHSLYWCLET*GRGTPW
Trigger: CCACGGTGTTCCCCTTCCCCAGGTCTCCAGGCACCA...ATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAGCTGCTGGAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp GGAATGAAAGAAGTGGGAGGGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTACTTGGCGGCCGTCATaGGCTCGGGGAAGCTCTCTA +
Preference number: 4 (lower is better)
Translates to: GMKEVGGTKTTKRGPRVPTWRPS*ARGSSL
Trigger: TAGAGAGCTTCCCCGAGCTCATGACGGCCGCCAAGT...AGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCCCTCCCACTTCTTTCATTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp TCAGATGAGAGTCTGTTTCTAAGACCACAGCAGGTGGGGTTAATGGAGGGAGGGCCAACTGGAGGCTTGTaGCGCCGTGCTGGGCCTCAT +
Preference number: 4 (lower is better)
Translates to: SDESLFLRPQQVGLMEGGPTGGL*RRAGPH
Trigger: ATGAGGCCCAGCACGGCGTCACAAGCCTCCAGTTGG...CCCTCCCTCCATTAACCCCACCTGCTGTGGTCTTAGAAACAGACTCTCATCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp CAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCCTTCCGGGGGCACGAGGATCTaGACGTTGGACTGTTTGATT +
Preference number: 4 (lower is better)
Translates to: QKGTWRLQGRGLQKGGPSGGTRI*TLDCLI
Trigger: AATCAAACAGTCCAACGTGCAGATCCTCGTGCCCCC...GGAAGGACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp CAGAACTGGTACTGCCTCAGAGGCCGATGTAGTGCTTTCTGCCCTTGCCCCATAGTTGGCTGCCATGGCTaGCCCGTTGGTCATGTCCAA +
Preference number: 4 (lower is better)
Translates to: QNWYCLRGRCSAFCPCPIVGCHG*PVGHVQ
Trigger: TTGGACATGACCAACGGGGCAGCCATGGCAGCCAAC...TATGGGGCAAGGGCAGAAAGCACTACATCGGCCTCTGAGGCAGTACCAGTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTTAGAGTTGGGGTGAGGACAACCGTTACTGTTGGCTaGCATGGCTGCCCCGTTGGT +
Preference number: 4 (lower is better)
Translates to: GPKLPSEAQECLRVGVRTTVTVG*HGCPVG
Trigger: ACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGT...TGTCCTCACCCCAACTCTAAGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp TCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTCATCTCACAAGCCACTTaGTTCCTGGTCCGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: SQHCSAVPSGCSVGTQHVISQAT*FLVRLL
Trigger: AAGGAGCCGGACCAGGAAGCAAGTGGCTTGTGAGAT...GACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCGGCAGATGTACGGTTTaGCCACTGACCCATCATGGG +
Preference number: 4 (lower is better)
Translates to: AFRKEHGAYRGGAFRKVVGRCTV*PLTHHG
Trigger: CCCATGATGGGTCAGTGGGCAAACCGTACATCTGCC...GACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp TTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTGGCAGATGTACGGTTTaGCCACTGACCCATCATGGG +
Preference number: 4 (lower is better)
Translates to: FTALLSSPQRLFCGDTACGRCTV*PLTHHG
Trigger: CCCATGATGGGTCAGTGGGCAAACCGTACATCTGCC...ACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp TTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTGTGGTCTGCCATGTATaGGGCCCGCAAGTACTTTCC +
Preference number: 4 (lower is better)
Translates to: FTALLSSPQRLFCGDTACVVCHV*GPQVLS
Trigger: GGAAAGTACTTGCGGGCCGCATACATGGCAGACCAC...ACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR GCA 90 bp CACTTCCCTTCAGGCCCCATGGGCTGCTGGTCCACCTCAGGATCCACTAAAGATCTTCTTCAGGTGGTCTaGCATGTATGCGGCCCGCAA +
Preference number: 4 (lower is better)
Translates to: HFPSGPMGCWSTSGSTKDLLQVV*HVCGPQ
Trigger: TTGCGGGCCGCATACATGGCAGACCACCTGAAGAAG...ATCTTTAGTGGATCCTGAGGTGGACCAGCAGCCCATGGGGCCTGAAGGGAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR GCA 90 bp TTAGCTTCCAGCAGCTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTCTGGGCCCCTCACTGTaGTTCTTCAGGTGGTCTGCC +
Preference number: 4 (lower is better)
Translates to: LASSSSRRPGPTSEDTLCLGPSL*FFRWSA
Trigger: GGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAG...ACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAGCTGCTGGAAGCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp CTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCTTACGGCGCGGTGCGCTaGGAAGCTCTCGTCGCCTAC +
Preference number: 4 (lower is better)
Translates to: LRGHSLYGPWDAVGFWLPYGAVR*EALVAY
Trigger: GTAGGCGACGAGAGCTTCCCAGCGCACCGCGCCGTA...AGGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCACAGGCAGAGAAGCTTaGCCCGCAATAGCAGCACCT +
Preference number: 4 (lower is better)
Translates to: AFRKEHGAYRGGAFRKVVTGREA*PAIAAP
Trigger: AGGTGCTGCTATTGCGGGCCAAGCTTCTCTGCCTGT...GACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp GTAAGACAATCAAGGTACTCGATGTCTCTACCTGAGGTTCTCCCACCTTCCTGGGGGGTCCAGCCACCATaGGCAATCTGTCCACCCCGG +
Preference number: 4 (lower is better)
Translates to: VRQSRYSMSLPEVLPPSWGVQPP*AICPPR
Trigger: CCGGGGTGGACAGATTGCCCATGGTGGCTGGACCCC...CCAGGAAGGTGGGAGAACCTCAGGTAGAGACATCGAGTACCTTGATTGTCTTAC
57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCGGGGTCCAGCCACCATaGGCAATCTGTCCACCCCGG +
Preference number: 4 (lower is better)
Translates to: EHQKFWLQTTRETRTGTAGVQPP*AICPPR
Trigger: CCGGGGTGGACAGATTGCCCATGGTGGCTGGACCCC...GGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGGGAGAAGTCAGTAGTTaGGGGGATAGGGGTCCAGCC +
Preference number: 4 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRGEVSS*GDRGPA
Trigger: GGCTGGACCCCTATCCCCCCAACTACTGACTTCTCC...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCTGGAGTCCAGCAGGTTaGCCTTCCTGGGGCGTCCCC +
Preference number: 4 (lower is better)
Translates to: EHQKFWLQTTRETRTGTAWSPAG*PSWGVP
Trigger: GGGGACGCCCCAGGAAGGCCAACCTGCTGGACTCCA...GGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp TTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTTTCCCTCAAGCCCCCTaGAGACCCAAACATGGAGTC +
Preference number: 4 (lower is better)
Translates to: FTALLSSPQRLFCGDTACFPQAP*RPKHGV
Trigger: GACTCCATGTTTGGGTCTCCAGGGGGCTTGAGGGAA...ACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTTAGAGTTGGGGTGAGGACACGGGGTCCTCGGAGATaGGTAACCCATTCTCACCCA +
Preference number: 4 (lower is better)
Translates to: GPKLPSEAQECLRVGVRTRGPRR*VTHSHP
Trigger: TGGGTGAGAATGGGTTACCCATCTCCGAGGACCCCG...TGTCCTCACCCCAACTCTAAGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp CAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCCTTCCAAGCCACTTGCTTCCTaGTCCGGCTCCTTTTTCTGG +
Preference number: 4 (lower is better)
Translates to: QKGTWRLQGRGLQKGGPSKPLAS*SGSFFW
Trigger: CCAGAAAAAGGAGCCGGACCAGGAAGCAAGTGGCTT...GGAAGGACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp ATTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGCTGTGCTTCTTCAGGTaGTCTGCCATGTATGCGGCC +
Preference number: 4 (lower is better)
Translates to: IHSIAQQSPAAVLWGHSMLCFFR*SAMYAA
Trigger: GGCCGCATACATGGCAGACCACCTGAAGAAGCACAG...CATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp CACTTCCCTTCAGGCCCCATGGGCTGCTGGTCCACCTCAGGATCCACTAAAGATTGGGTTCCTGGTGCCTaGAGACCTCGGTTACAGATG +
Preference number: 4 (lower is better)
Translates to: HFPSGPMGCWSTSGSTKDWVPGA*RPRLQM
Trigger: CATCTGTAACCGAGGTCTCCAGGCACCAGGAACCCA...ATCTTTAGTGGATCCTGAGGTGGACCAGCAGCCCATGGGGCCTGAAGGGAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR TCA 90 bp TCAGATGAGAGTCTGTTTCTAAGACCACAGCAGGTGGGGTTAATGGAGGGAGGGACTTGGCGGCCGTCATaGGCTCGGGGAAGCTCTCTA +
Preference number: 4 (lower is better)
Translates to: SDESLFLRPQQVGLMEGGTWRPS*ARGSSL
Trigger: TAGAGAGCTTCCCCGAGCTCATGACGGCCGCCAAGT...CCCTCCCTCCATTAACCCCACCTGCTGTGGTCTTAGAAACAGACTCTCATCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp GGACTTAGAACGGAAGAAGCTCCCACATTCAGGGCATGGGTACTTCTTCTCCCCCCTGGCAGATCTCGATaGCCGACCTCATCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: GLRTEEAPTFRAWVLLLPPGRSR*PTSSAG
Trigger: TCCTGCTGATGAGGTCGGTCATCGAGATCTGCCAGG...GGGGAGAAGAAGTACCCATGCCCTGAATGTGGGAGCTTCTTCCGTTCTAAGTCC
56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR TCA 90 bp GAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCCCAACTGGAGGCTTGTaGCGCCGTGCTGGGCCTCAT +
Preference number: 4 (lower is better)
Translates to: EHQKFWLQTTRETRTGTAPTGGL*RRAGPH
Trigger: ATGAGGCCCAGCACGGCGTCACAAGCCTCCAGTTGG...GGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp AAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCTCAGAGGCCGGCACCTTGTCTTCATaGCAGGCCAGGTGGGAGCGC +
Preference number: 4 (lower is better)
Translates to: KFWLQTTRETRTGTASEAGTLSS*QARWER
Trigger: GCGCTCCCACCTGGCCTGTCATGAAGACAAGGTGCC...GGCCTCTGAGGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR GCA 90 bp GTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAGCCAGTACGGCGCGGTaGGCTGGGAAGCTCTCGTCG +
Preference number: 4 (lower is better)
Translates to: VRTPITEHQKFWLQTTREASTAR*AGKLSS
Trigger: CGACGAGAGCTTCCCAGCGCACCGCGCCGTACTGGC...TTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp AGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGGTTGGCTGCCATGGCTaGCCCGTTGGTCATGTCCAA +
Preference number: 4 (lower is better)
Translates to: RRPGPTSEDTLCMVHGMLVGCHG*PVGHVQ
Trigger: TTGGACATGACCAACGGGGCAGCCATGGCAGCCAAC...CAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp CTACAGGGGAGGGGCCTTCAGAAAGGTGGTCCTTCCTATCTCTACTTGAGAGCTACCGTTACTGTTGGCTaGCATGGCTGCCCCGTTGGT +
Preference number: 4 (lower is better)
Translates to: LQGRGLQKGGPSYLYLRATVTVG*HGCPVG
Trigger: ACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGT...AGCTCTCAAGTAGAGATAGGAAGGACCACCTTTCTGAAGGCCCCTCCCCTGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp GGGCTTAACTCCCTAGAATTCCCAACTTCTAGATTCCCCAAAGTTGGCAGCCCTTGCTGGGCCTCATGTTaGCGGAGCCGGTTGGCGTCA +
Preference number: 4 (lower is better)
Translates to: GLNSLEFPTSRFPKVGSPCWASC*RSRLAS
Trigger: TGACGCCAACCGGCTCCGGCAACATGAGGCCCAGCA...AGGGCTGCCAACTTTGGGGAATCTAGAAGTTGGGAATTCTAGGGAGTTAAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp TCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTCGGTCGCTCAGAAGTGTaGACCTGCTTGATATGTCCA +
Preference number: 4 (lower is better)
Translates to: SQHCSAVPSGCSVGTQHVGRSEV*TCLICP
Trigger: TGGACATATCAAGCAGGTGCACACTTCTGAGCGACC...GACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp CCCATGGGCTGCTGGTCCACCTCAGGATCCACTAAAGATGATGCAAACGCTGACCTTCTTCAGGTGGTCTaGCATGTATGCGGCCCGCAA +
Preference number: 4 (lower is better)
Translates to: PMGCWSTSGSTKDDANADLLQVV*HVCGPQ
Trigger: TTGCGGGCCGCATACATGGCAGACCACCTGAAGAAG...GTCAGCGTTTGCATCATCTTTAGTGGATCCTGAGGTGGACCAGCAGCCCATGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR GCA 90 bp AAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCTCAGAGGCCTCAGGCCCCATGGGCTaGTGGTCCACCTCAGGATCC +
Preference number: 4 (lower is better)
Translates to: KFWLQTTRETRTGTASEASGPMG*WSTSGS
Trigger: GGATCCTGAGGTGGACCAGCAGCCCATGGGGCCTGA...GGCCTCTGAGGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp CCCAAGGGCACGGACATGCACCTTCTGGATGTGTTTGTTCAAGTAGGACTTAGAGGCGCAGTGGAACGCTaGTCCCCCATTCAGGATGGG +
Preference number: 4 (lower is better)
Translates to: PKGTDMHLLDVFVQVGLRGAVER*SPIQDG
Trigger: CCCATCCTGAATGGGGGAGCAGCGTTCCACTGCGCC...TCTAAGTCCTACTTGAACAAACACATCCAGAAGGTGCATGTCCGTGCCCTTGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR GCA 90 bp TCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTCAACCTCGGTTACAGATaGTACAGAAGTTGCTGGGCC +
Preference number: 4 (lower is better)
Translates to: SQHCSAVPSGCSVGTQHVNLGYR*YRSCWA
Trigger: GGCCCAGCAACTTCTGTAGCATCTGTAACCGAGGTT...GACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp AAGCAGGAGTCTCCAGCCAGCCATCATTGCCTCCACCTCTCCAGAGGGACCCAGCCGTTTTTGCGTTGTTaGTTCAGGTTGTGCAGCATC +
Preference number: 4 (lower is better)
Translates to: KQESPASHHCLHLSRGTQPFLRC*FRLCSI
Trigger: GATGCTGCACAACCTGAACCAACAACGCAAAAACGG...CTGGGTCCCTCTGGAGAGGTGGAGGCAATGATGGCTGGCTGGAGACTCCTGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp TTAGCTTCCAGCAGCTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTCCATGGCTGCCCCGTTaGTCATGTCCAAAGGGAAGC +
Preference number: 4 (lower is better)
Translates to: LASSSSRRPGPTSEDTLCPWLPR*SCPKGS
Trigger: GCTTCCCTTTGGACATGACCAACGGGGCAGCCATGG...ACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAGCTGCTGGAAGCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTCCCTCAAGCCCCCTaGAGACCCAAACATGGAGTC +
Preference number: 4 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRFPQAP*RPKHGV
Trigger: GACTCCATGTTTGGGTCTCCAGGGGGCTTGAGGGAA...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp TCAGATGAGAGTCTGTTTCTAAGACCACAGCAGGTGGGGTTAATGGAGGGAGGGCCCGCACAGGCCACATaGAAGGATGCCTGCTTCCCT +
Preference number: 4 (lower is better)
Translates to: SDESLFLRPQQVGLMEGGPAQAT*KDACFP
Trigger: AGGGAAGCAGGCATCCTTCCATGTGGCCTGTGCGGG...CCCTCCCTCCATTAACCCCACCTGCTGTGGTCTTAGAAACAGACTCTCATCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GTAAGACAATCAAGGTACTCGATGTCTCTACCTGAGGTTCTCCCACCTTCCTGGTCCGGCTCCTTTTTCTaGGGCCATCGGGGTCCTCGG +
Preference number: 4 (lower is better)
Translates to: VRQSRYSMSLPEVLPPSWSGSFF*GHRGPR
Trigger: CCGAGGACCCCGATGGCCCCAGAAAAAGGAGCCGGA...CCAGGAAGGTGGGAGAACCTCAGGTAGAGACATCGAGTACCTTGATTGTCTTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GGTCAACCTGGGCTGCTCAAGTGTAAGACAATCAAGGTACTCGATGTCTCTACCTCCGGCTCCTTTTTCTaGGGCCATCGGGGTCCTCGG +
Preference number: 4 (lower is better)
Translates to: GQPGLLKCKTIKVLDVSTSGSFF*GHRGPR
Trigger: CCGAGGACCCCGATGGCCCCAGAAAAAGGAGCCGGA...GGTAGAGACATCGAGTACCTTGATTGTCTTACACTTGAGCAGCCCAGGTTGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GGTCAACCTGGGCTGCTCAAGTGTAAGACAATCAAGGTACTCGATGTCTCTACCGCGTCTTCAGGTCGCTaGCGTCGGAGAGGTCACCGT +
Preference number: 4 (lower is better)
Translates to: GQPGLLKCKTIKVLDVSTASSGR*RRRGHR
Trigger: ACGGTGACCTCTCCGACGCCAGCGACCTGAAGACGC...GGTAGAGACATCGAGTACCTTGATTGTCTTACACTTGAGCAGCCCAGGTTGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GGAATGAAAGAAGTGGGAGGGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTGGCACTCTGTTTCTCTaGCGTCTTCAGGTCGCTGGC +
Preference number: 4 (lower is better)
Translates to: GMKEVGGTKTTKRGPRVPGTLFL*RLQVAG
Trigger: GCCAGCGACCTGAAGACGCCAGAGAAACAGAGTGCC...AGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCCCTCCCACTTCTTTCATTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGCCCACATTCAGGGCATaGGTACTTCTTCTCCCCGTC +
Preference number: 4 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRPTFRA*VLLLPV
Trigger: GACGGGGAGAAGAAGTACCCATGCCCTGAATGTGGG...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGCGCCTAACTGGGCGCTaGACACAGACTCAAAGTACT +
Preference number: 4 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRRLTGR*TQTQST
Trigger: AGTACTTTGAGTCTGTGTTCAGCGCCCAGTTAGGCG...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp TCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTCGCACGTTGGACTGTTTaGTTACTTCCTGGCAGATCT +
Preference number: 4 (lower is better)
Translates to: SQHCSAVPSGCSVGTQHVARWTV*LLPGRS
Trigger: AGATCTGCCAGGAAGTAATCAAACAGTCCAACGTGC...GACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp GTTCAAGTAGGACTTAGAACGGAAGAAGCTCCCACATTCAGGGCATGGGTACTTGGCACCTTGTCTTCATaGCAGGCCAGGTGGGAGCGC +
Preference number: 4 (lower is better)
Translates to: VQVGLRTEEAPTFRAWVLGTLSS*QARWER
Trigger: GCGCTCCCACCTGGCCTGTCATGAAGACAAGGTGCC...AAGTACCCATGCCCTGAATGTGGGAGCTTCTTCCGTTCTAAGTCCTACTTGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR GCA 90 bp TCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTCTGTTGGTTCAGGTTGTaGAGCATCTCCGTACTGTGT +
Preference number: 4 (lower is better)
Translates to: SQHCSAVPSGCSVGTQHVCWFRL*SISVLC
Trigger: ACACAGTACGGAGATGCTGCACAACCTGAACCAACA...GACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGGGGGGCACGAGGATCTaGACGTTGGACTGTTTGATT +
Preference number: 4 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRGGTRI*TLDCLI
Trigger: AATCAAACAGTCCAACGTGCAGATCCTCGTGCCCCC...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
54% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTTAGAGTTGGGGTGAGGACAGGGGGCACGAGGATCTaGACGTTGGACTGTTTGATT +
Preference number: 4 (lower is better)
Translates to: GPKLPSEAQECLRVGVRTGGTRI*TLDCLI
Trigger: AATCAAACAGTCCAACGTGCAGATCCTCGTGCCCCC...TGTCCTCACCCCAACTCTAAGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp CAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCCTTCCCGTCACGAAAGATCTTaGCACAGATCTCACAAGCCA +
Preference number: 4 (lower is better)
Translates to: QKGTWRLQGRGLQKGGPSRHERS*HRSHKP
Trigger: TGGCTTGTGAGATCTGTGGCAAGATCTTTCGTGACG...GGAAGGACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp GGAATGAAAGAAGTGGGAGGGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTGGCAGATGTACGGTTTaGCCACTGACCCATCATGGG +
Preference number: 4 (lower is better)
Translates to: GMKEVGGTKTTKRGPRVPGRCTV*PLTHHG
Trigger: CCCATGATGGGTCAGTGGGCAAACCGTACATCTGCC...AGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCCCTCCCACTTCTTTCATTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp AGACTCCATTTTGTTTTTAGGGACTGCCACGTCGCAGGAGAAGGAGCCGTTGGCGGCAGATGTACGGTTTaGCCACTGACCCATCATGGG +
Preference number: 4 (lower is better)
Translates to: RLHFVFRDCHVAGEGAVGGRCTV*PLTHHG
Trigger: CCCATGATGGGTCAGTGGGCAAACCGTACATCTGCC...GCCAACGGCTCCTTCTCCTGCGACGTGGCAGTCCCTAAAAACAAAATGGAGTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR GCA 90 bp GAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTGTGGTCTGCCATGTATaGGGCCCGCAAGTACTTTCC +
Preference number: 4 (lower is better)
Translates to: EDQGQPQRTLFVWSMGCCVVCHV*GPQVLS
Trigger: GGAAAGTACTTGCGGGCCGCATACATGGCAGACCAC...ACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR GCA 90 bp GAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTCTTCTTCAGGTGGTCTaGCATGTATGCGGCCCGCAA +
Preference number: 4 (lower is better)
Translates to: EDQGQPQRTLFVWSMGCCLLQVV*HVCGPQ
Trigger: TTGCGGGCCGCATACATGGCAGACCACCTGAAGAAG...ACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR GCA 90 bp CTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCTCTGGGCCCCTCACTGTaGTTCTTCAGGTGGTCTGCC +
Preference number: 4 (lower is better)
Translates to: LRGHSLYGPWDAVGFWLPLGPSL*FFRWSA
Trigger: GGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAG...AGGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR GCA 90 bp ATTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGCTTCTCGGTTACAGATaGTACAGAAGTTGCTGGGCC +
Preference number: 4 (lower is better)
Translates to: IHSIAQQSPAAVLWGHSMLLGYR*YRSCWA
Trigger: GGCCCAGCAACTTCTGTAGCATCTGTAACCGAGAAG...CATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057089.13
CDS-3UTR GCA 90 bp GGAGAGCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGCGCATTGCTGGAGTGTaGTGGACTCAGGTTTTCAAG +
Preference number: 4 (lower is better)
Translates to: GEHSERNMAPTGEGPSERRIAGV*WTQVFK
Trigger: CTTGAAAACCTGAGTCCAGCACACTCCAGCAATGCG...CCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGCTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp CAGAACTGGTACTGCCTCAGAGGCCGATGTAGTGCTTTCTGCCCTTGCCCCATAGACCTCGGTTACAGATaGTACAGAAGTTGCTGGGCC +
Preference number: 4 (lower is better)
Translates to: QNWYCLRGRCSAFCPCPIDLGYR*YRSCWA
Trigger: GGCCCAGCAACTTCTGTAGCATCTGTAACCGAGGTC...TATGGGGCAAGGGCAGAAAGCACTACATCGGCCTCTGAGGCAGTACCAGTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp GTAAGACAATCAAGGTACTCGATGTCTCTACCTGAGGTTCTCCCACCTTCCTGGCCGCCGTCGCCTAACTaGGCGCTGAACACAGACTCA +
Preference number: 4 (lower is better)
Translates to: VRQSRYSMSLPEVLPPSWPPSPN*ALNTDS
Trigger: TGAGTCTGTGTTCAGCGCCCAGTTAGGCGACGGCGG...CCAGGAAGGTGGGAGAACCTCAGGTAGAGACATCGAGTACCTTGATTGTCTTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GGGCTTAACTCCCTAGAATTCCCAACTTCTAGATTCCCCAAAGTTGGCAGCCCTCCGCCGTCGCCTAACTaGGCGCTGAACACAGACTCA +
Preference number: 4 (lower is better)
Translates to: GLNSLEFPTSRFPKVGSPPPSPN*ALNTDS
Trigger: TGAGTCTGTGTTCAGCGCCCAGTTAGGCGACGGCGG...AGGGCTGCCAACTTTGGGGAATCTAGAAGTTGGGAATTCTAGGGAGTTAAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp GATTCCCCCTCCCGCCCAATTAAGAGGAGGGTGACTGGGAGCCCCAGTCAGTGTTGTTTGATTACTTCCTaGCAGATCTCGATGACCGAC +
Preference number: 4 (lower is better)
Translates to: DSPSRPIKRRVTGSPSQCCLITS*QISMTD
Trigger: GTCGGTCATCGAGATCTGCCAGGAAGTAATCAAACA...ACACTGACTGGGGCTCCCAGTCACCCTCCTCTTAATTGGGCGGGAGGGGGAATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp GAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTTACTGTTGGCTGCCATaGCTGCCCCGTTGGTCATGT +
Preference number: 4 (lower is better)
Translates to: EDQGQPQRTLFVWSMGCCYCWLP*LPRWSC
Trigger: ACATGACCAACGGGGCAGCCATGGCAGCCAACAGTA...ACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp CTACAGGGGAGGGGCCTTCAGAAAGGTGGTCCTTCCTATCTCTACTTGAGAGCTTACTGTTGGCTGCCATaGCTGCCCCGTTGGTCATGT +
Preference number: 4 (lower is better)
Translates to: LQGRGLQKGGPSYLYLRAYCWLP*LPRWSC
Trigger: ACATGACCAACGGGGCAGCCATGGCAGCCAACAGTA...AGCTCTCAAGTAGAGATAGGAAGGACCACCTTTCTGAAGGCCCCTCCCCTGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp GGAATGAAAGAAGTGGGAGGGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTTACTGTTGGCTGCCATaGCTGCCCCGTTGGTCATGT +
Preference number: 4 (lower is better)
Translates to: GMKEVGGTKTTKRGPRVPYCWLP*LPRWSC
Trigger: ACATGACCAACGGGGCAGCCATGGCAGCCAACAGTA...AGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCCCTCCCACTTCTTTCATTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTCAATACCGTTACTGTTaGCTGCCATGGCTGCCCCGT +
Preference number: 4 (lower is better)
Translates to: EDQGQPQRTLFVWSMGCCQYRYC*LPWLPR
Trigger: ACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTG...ACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp AGACTCCATTTTGTTTTTAGGGACTGCCACGTCGCAGGAGAAGGAGCCGTTGGCCAATACCGTTACTGTTaGCTGCCATGGCTGCCCCGT +
Preference number: 4 (lower is better)
Translates to: RLHFVFRDCHVAGEGAVGQYRYC*LPWLPR
Trigger: ACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTG...GCCAACGGCTCCTTCTCCTGCGACGTGGCAGTCCCTAAAAACAAAATGGAGTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR CCA 90 bp TGCTGGGCAGGAACCATCTTGCTAGCTATCCTCTGCCAAAAGCAGGAGTCTCCACAATACCGTTACTGTTaGCTGCCATGGCTGCCCCGT +
Preference number: 4 (lower is better)
Translates to: CWAGTILLAILCQKQESPQYRYC*LPWLPR
Trigger: ACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTG...TGGAGACTCCTGCTTTTGGCAGAGGATAGCTAGCAAGATGGTTCCTGCCCAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp GAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTCAATACCGTTACTGTTaGCTGCCATGGCTGCCCCGT +
Preference number: 4 (lower is better)
Translates to: EKTRANLRGHSLYGPWDAQYRYC*LPWLPR
Trigger: ACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTG...AGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp TTAGCTTCCAGCAGCTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTACAGGCAGAGAAGCTTaGCCCGCAATAGCAGCACCT +
Preference number: 4 (lower is better)
Translates to: LASSSSRRPGPTSEDTLCTGREA*PAIAAP
Trigger: AGGTGCTGCTATTGCGGGCCAAGCTTCTCTGCCTGT...ACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAGCTGCTGGAAGCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTACAGGCAGAGAAGCTTaGCCCGCAATAGCAGCACCT +
Preference number: 4 (lower is better)
Translates to: EKTRANLRGHSLYGPWDATGREA*PAIAAP
Trigger: AGGTGCTGCTATTGCGGGCCAAGCTTCTCTGCCTGT...AGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp AGGTTTCTGGCTTCCTTAAAAATAGTTGGCCATAAGAGGGTAGAGACCCTACTTGCAGGTTGGCCTTCCTaGGGCGTCCCCGGCCTCGCT +
Preference number: 4 (lower is better)
Translates to: RFLASLKIVGHKRVETLLAGWPS*GVPGLA
Trigger: AGCGAGGCCGGGGACGCCCCAGGAAGGCCAACCTGC...AAGTAGGGTCTCTACCCTCTTATGGCCAACTATTTTTAAGGAAGCCAGAAACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp TGCTGGGCAGGAACCATCTTGCTAGCTATCCTCTGCCAAAAGCAGGAGTCTCCATTCCCTCAAGCCCCCTaGAGACCCAAACATGGAGTC +
Preference number: 4 (lower is better)
Translates to: CWAGTILLAILCQKQESPFPQAP*RPKHGV
Trigger: GACTCCATGTTTGGGTCTCCAGGGGGCTTGAGGGAA...TGGAGACTCCTGCTTTTGGCAGAGGATAGCTAGCAAGATGGTTCCTGCCCAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp GGCACTCTGTTTCTCTGGCGTCTTCAGGTCGCTGGCGTCGGAGAGGTCACCGTAATTCTCACCCAGCCTTaGAGGAGGAAGATCGATATA +
Preference number: 4 (lower is better)
Translates to: GTLFLWRLQVAGVGEVTVILTQP*RRKIDI
Trigger: TATATCGATCTTCCTCCTCCAAGGCTGGGTGAGAAT...TACGGTGACCTCTCCGACGCCAGCGACCTGAAGACGCCAGAGAAACAGAGTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR CCA 90 bp CATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCCTCAAGTGATCTGGCCTaGAGAAACCTTTCCCACAGC +
Preference number: 4 (lower is better)
Translates to: HSERNMAPTGEGPSERWSSSDLA*RNLSHS
Trigger: GCTGTGGGAAAGGTTTCTCCAGGCCAGATCACTTGA...GGACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp TTAGCTTCCAGCAGCTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTCTGTGCTTCTTCAGGTaGTCTGCCATGTATGCGGCC +
Preference number: 4 (lower is better)
Translates to: LASSSSRRPGPTSEDTLCLCFFR*SAMYAA
Trigger: GGCCGCATACATGGCAGACCACCTGAAGAAGCACAG...ACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAGCTGCTGGAAGCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp GGAATGAAAGAAGTGGGAGGGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTCCCACATTCAGGGCATaGGTACTTCTTCTCCCCGTC +
Preference number: 4 (lower is better)
Translates to: GMKEVGGTKTTKRGPRVPPTFRA*VLLLPV
Trigger: GACGGGGAGAAGAAGTACCCATGCCCTGAATGTGGG...AGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCCCTCCCACTTCTTTCATTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCATTGCTGGAGTGTGCTaGACTCAGGTTTTCAAGGGC +
Preference number: 4 (lower is better)
Translates to: AFRKEHGAYRGGAFRKVVIAGVC*TQVFKG
Trigger: GCCCTTGAAAACCTGAGTCCAGCACACTCCAGCAAT...GACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp TCAGATGAGAGTCTGTTTCTAAGACCACAGCAGGTGGGGTTAATGGAGGGAGGGCTCCCCCATTCAGGATaGGTTCCTGGTGCCTGGAGA +
Preference number: 4 (lower is better)
Translates to: SDESLFLRPQQVGLMEGGLPHSG*VPGAWR
Trigger: TCTCCAGGCACCAGGAACCCATCCTGAATGGGGGAG...CCCTCCCTCCATTAACCCCACCTGCTGTGGTCTTAGAAACAGACTCTCATCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp CAGAACTGGTACTGCCTCAGAGGCCGATGTAGTGCTTTCTGCCCTTGCCCCATAGGAAGGGGAACACCGTaGTGGGTTTTAACATGGACC +
Preference number: 4 (lower is better)
Translates to: QNWYCLRGRCSAFCPCPIGRGTP*WVLTWT
Trigger: GGTCCATGTTAAAACCCACCACGGTGTTCCCCTTCC...TATGGGGCAAGGGCAGAAAGCACTACATCGGCCTCTGAGGCAGTACCAGTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110043.8
3UTR CAA 72 bp GGGCATGGGTACTTCTTCTCCCCGTCAGACTCCATTTaGTTTTTAGGGACTGCCACGTCGCAGGAGAAGGAG +
Preference number: 4 (lower is better)
Translates to: GHGYFFSPSDSI*FLGTATSQEKE
Trigger: CTCCTTCTCCTGCGACGTGGCAGTCCCTAAAAACAAAATGGAGTCTGACGGGGAGAAGAAGTACCCATGCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR TCA 90 bp GGAATGAAAGAAGTGGGAGGGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTCGCCTAACTGGGCGCTaGACACAGACTCAAAGTACT +
Preference number: 4 (lower is better)
Translates to: GMKEVGGTKTTKRGPRVPRLTGR*TQTQST
Trigger: AGTACTTTGAGTCTGTGTTCAGCGCCCAGTTAGGCG...AGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCCCTCCCACTTCTTTCATTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp GTAAGACAATCAAGGTACTCGATGTCTCTACCTGAGGTTCTCCCACCTTCCTGGCCTGGCAGATCTCGATaGCCGACCTCATCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: VRQSRYSMSLPEVLPPSWPGRSR*PTSSAG
Trigger: TCCTGCTGATGAGGTCGGTCATCGAGATCTGCCAGG...CCAGGAAGGTGGGAGAACCTCAGGTAGAGACATCGAGTACCTTGATTGTCTTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp GGTCAACCTGGGCTGCTCAAGTGTAAGACAATCAAGGTACTCGATGTCTCTACCCCTGGCAGATCTCGATaGCCGACCTCATCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: GQPGLLKCKTIKVLDVSTPGRSR*PTSSAG
Trigger: TCCTGCTGATGAGGTCGGTCATCGAGATCTGCCAGG...GGTAGAGACATCGAGTACCTTGATTGTCTTACACTTGAGCAGCCCAGGTTGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp GCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCGCACGTTGGACTGTTTaGTTACTTCCTGGCAGATCT +
Preference number: 4 (lower is better)
Translates to: AFRKEHGAYRGGAFRKVVARWTV*LLPGRS
Trigger: AGATCTGCCAGGAAGTAATCAAACAGTCCAACGTGC...GACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR TCA 90 bp GTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAGTGGGCGAAAGAGCATaGTATCAGCCCGGGCAGGGG +
Preference number: 4 (lower is better)
Translates to: VRTPITEHQKFWLQTTREVGERA*YQPGQG
Trigger: CCCCTGCCCGGGCTGATATCATGCTCTTTCGCCCAC...TTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp TTAGCTTCCAGCAGCTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTTTCGGTCTTTTCTCTTaGACCGCAGACCACACACCG +
Preference number: 4 (lower is better)
Translates to: LASSSSRRPGPTSEDTLCFGLFS*TADHTP
Trigger: CGGTGTGTGGTCTGCGGTTCAAGAGAAAAGACCGAA...ACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAGCTGCTGGAAGCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp AAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCTCAGAGGCCGTACGGTTTGCCCACTaGCCCATCATGGGACCTCAC +
Preference number: 4 (lower is better)
Translates to: KFWLQTTRETRTGTASEAVRFAH*PIMGPH
Trigger: GTGAGGTCCCATGATGGGTCAGTGGGCAAACCGTAC...GGCCTCTGAGGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp ATTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGAATCAGATCCTGATGTaGGCATTTCTGGCCTTCTCG +
Preference number: 4 (lower is better)
Translates to: IHSIAQQSPAAVLWGHSMNQILM*AFLAFS
Trigger: CGAGAAGGCCAGAAATGCTCACATCAGGATCTGATT...CATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057089.13
CDS-3UTR TCA 90 bp TTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTCTCTCAATCAGATCCTaGTGTGAGCATTTCTGGCCT +
Preference number: 4 (lower is better)
Translates to: FTALLSSPQRLFCGDTACLSIRS*CEHFWP
Trigger: AGGCCAGAAATGCTCACATCAGGATCTGATTGAGAG...ACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GGTCAACCTGGGCTGCTCAAGTGTAAGACAATCAAGGTACTCGATGTCTCTACCACTCAAAGTACTCGCTaGAGGCAGCCAGTACGGCGC +
Preference number: 4 (lower is better)
Translates to: GQPGLLKCKTIKVLDVSTTQSTR*RQPVRR
Trigger: GCGCCGTACTGGCTGCCTGCAGCGAGTACTTTGAGT...GGTAGAGACATCGAGTACCTTGATTGTCTTACACTTGAGCAGCCCAGGTTGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGGGGGCACGAGGATCTaGACGTTGGACTGTTTGATT +
Preference number: 4 (lower is better)
Translates to: EKTRANLRGHSLYGPWDAGGTRI*TLDCLI
Trigger: AATCAAACAGTCCAACGTGCAGATCCTCGTGCCCCC...AGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GGGCTTAACTCCCTAGAATTCCCAACTTCTAGATTCCCCAAAGTTGGCAGCCCTGTTGGCTGCCATGGCTaGCCCGTTGGTCATGTCCAA +
Preference number: 4 (lower is better)
Translates to: GLNSLEFPTSRFPKVGSPVGCHG*PVGHVQ
Trigger: TTGGACATGACCAACGGGGCAGCCATGGCAGCCAAC...AGGGCTGCCAACTTTGGGGAATCTAGAAGTTGGGAATTCTAGGGAGTTAAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp GGTCAACCTGGGCTGCTCAAGTGTAAGACAATCAAGGTACTCGATGTCTCTACCACCGTTACTGTTGGCTaGCATGGCTGCCCCGTTGGT +
Preference number: 4 (lower is better)
Translates to: GQPGLLKCKTIKVLDVSTTVTVG*HGCPVG
Trigger: ACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGT...GGTAGAGACATCGAGTACCTTGATTGTCTTACACTTGAGCAGCCCAGGTTGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GTTGGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTACCGTTACTGTTGGCTaGCATGGCTGCCCCGTTGGT +
Preference number: 4 (lower is better)
Translates to: VGVRTPITEHQKFWLQTTTVTVG*HGCPVG
Trigger: ACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGT...AGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAACATGGAAGGATGCCTaGTTCCCTCAAGCCCCCTGG +
Preference number: 4 (lower is better)
Translates to: GVRTPITEHQKFWLQTTRTWKDA*FPQAPW
Trigger: CCAGGGGGCTTGAGGGAAGCAGGCATCCTTCCATGT...TCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCACATGGAAGGATGCCTaGTTCCCTCAAGCCCCCTGG +
Preference number: 4 (lower is better)
Translates to: EHQKFWLQTTRETRTGTATWKDA*FPQAPW
Trigger: CCAGGGGGCTTGAGGGAAGCAGGCATCCTTCCATGT...GGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GGACTTAGAACGGAAGAAGCTCCCACATTCAGGGCATGGGTACTTCTTCTCCCCATCTCACAAGCCACTTaGTTCCTGGTCCGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: GLRTEEAPTFRAWVLLLPISQAT*FLVRLL
Trigger: AAGGAGCCGGACCAGGAAGCAAGTGGCTTGTGAGAT...GGGGAGAAGAAGTACCCATGCCCTGAATGTGGGAGCTTCTTCCGTTCTAAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR GCA 90 bp TCAGATGAGAGTCTGTTTCTAAGACCACAGCAGGTGGGGTTAATGGAGGGAGGGCTTCTTCAGGTGGTCTaGCATGTATGCGGCCCGCAA +
Preference number: 4 (lower is better)
Translates to: SDESLFLRPQQVGLMEGGLLQVV*HVCGPQ
Trigger: TTGCGGGCCGCATACATGGCAGACCACCTGAAGAAG...CCCTCCCTCCATTAACCCCACCTGCTGTGGTCTTAGAAACAGACTCTCATCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR GCA 90 bp GAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTCCAAGGGCACGGACATaGACCTTCTGGATGTGTTTG +
Preference number: 4 (lower is better)
Translates to: EDQGQPQRTLFVWSMGCCPRART*TFWMCL
Trigger: CAAACACATCCAGAAGGTGCATGTCCGTGCCCTTGG...ACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp TTAGCTTCCAGCAGCTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTTCGCAAAGGAGGCATTaGAGGTCTCCACAAAGCAGG +
Preference number: 4 (lower is better)
Translates to: LASSSSRRPGPTSEDTLCSQRRH*RSPQSR
Trigger: CCTGCTTTGTGGAGACCTGCAATGCCTCCTTTGCGA...ACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAGCTGCTGGAAGCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGGTCAGAAGTCCCAGGTaGGCGAAAGAGCATGATATC +
Preference number: 4 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRVRSPR*AKEHDI
Trigger: GATATCATGCTCTTTCGCCCACCTGGGACTTCTGAC...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GGGCTTAACTCCCTAGAATTCCCAACTTCTAGATTCCCCAAAGTTGGCAGCCCTCCATGGCTGCCCCGTTaGTCATGTCCAAAGGGAAGC +
Preference number: 4 (lower is better)
Translates to: GLNSLEFPTSRFPKVGSPPWLPR*SCPKGS
Trigger: GCTTCCCTTTGGACATGACCAACGGGGCAGCCATGG...AGGGCTGCCAACTTTGGGGAATCTAGAAGTTGGGAATTCTAGGGAGTTAAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp GGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGACCATGGCTGCCCCGTTaGTCATGTCCAAAGGGAAGC +
Preference number: 4 (lower is better)
Translates to: GVRTPITEHQKFWLQTTRPWLPR*SCPKGS
Trigger: GCTTCCCTTTGGACATGACCAACGGGGCAGCCATGG...TCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp CCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCTACTGTTGGCTGCCATaGCTGCCCCGTTGGTCATGT +
Preference number: 4 (lower is better)
Translates to: PQRTLFVWSMGCCRFLASYCWLP*LPRWSC
Trigger: ACATGACCAACGGGGCAGCCATGGCAGCCAACAGTA...GGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GAGTGTCTACCTGCTCTGTCAGTCCCTAAAGCCATGTATCACAATACAATACTGGGGGTCCAGCCACCATaGGCAATCTGTCCACCCCGG +
Preference number: 4 (lower is better)
Translates to: ECLPALSVPKAMYHNTILGVQPP*AICPPR
Trigger: CCGGGGTGGACAGATTGCCCATGGTGGCTGGACCCC...CAGTATTGTATTGTGATACATGGCTTTAGGGACTGACAGAGCAGGTAGACACTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp GTAAGACAATCAAGGTACTCGATGTCTCTACCTGAGGTTCTCCCACCTTCCTGGGGAGAAGTCAGTAGTTaGGGGGATAGGGGTCCAGCC +
Preference number: 4 (lower is better)
Translates to: VRQSRYSMSLPEVLPPSWGEVSS*GDRGPA
Trigger: GGCTGGACCCCTATCCCCCCAACTACTGACTTCTCC...CCAGGAAGGTGGGAGAACCTCAGGTAGAGACATCGAGTACCTTGATTGTCTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGGCTTCTCCCCCGAGTaGGAAAGCTTATGCCGGTTG +
Preference number: 4 (lower is better)
Translates to: GVRTPITEHQKFWLQTTRGFSPE*ESLCRL
Trigger: CAACCGGCATAAGCTTTCCCACTCGGGGGAGAAGCC...TCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GTTGGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTGGCTTCTCCCCCGAGTaGGAAAGCTTATGCCGGTTG +
Preference number: 4 (lower is better)
Translates to: VGVRTPITEHQKFWLQTTGFSPE*ESLCRL
Trigger: CAACCGGCATAAGCTTTCCCACTCGGGGGAGAAGCC...AGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp TTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTTCCATTCAAGTGATCTaGCCTGGAGAAACCTTTCCC +
Preference number: 4 (lower is better)
Translates to: FTALLSSPQRLFCGDTACSIQVI*PGETFP
Trigger: GGGAAAGGTTTCTCCAGGCCAGATCACTTGAATGGA...ACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTTAGAGTTGGGGTGAGGACATACTTTCCACACACCTaGCAGGGCACCTTGTCTTCA +
Preference number: 4 (lower is better)
Translates to: GPKLPSEAQECLRVGVRTYFPHT*QGTLSS
Trigger: TGAAGACAAGGTGCCCTGCCAGGTGTGTGGAAAGTA...TGTCCTCACCCCAACTCTAAGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp AGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTGCTACAGAAGTTGCTaGGCCCCTCACTGTGCTTCT +
Preference number: 4 (lower is better)
Translates to: RRPGPTSEDTLCMVHGMLCYRSC*APHCAS
Trigger: AGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCA...CAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp ATTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGAGAGACATGTTCTGCTaGGGAGAGAAAGGTGAACCA +
Preference number: 4 (lower is better)
Translates to: IHSIAQQSPAAVLWGHSMRDMFC*GEKGEP
Trigger: TGGTTCACCTTTCTCTCCCCAGCAGAACATGTCTCT...CATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GTAAGACAATCAAGGTACTCGATGTCTCTACCTGAGGTTCTCCCACCTTCCTGGCTCCCCCATTCAGGATaGGTTCCTGGTGCCTGGAGA +
Preference number: 4 (lower is better)
Translates to: VRQSRYSMSLPEVLPPSWLPHSG*VPGAWR
Trigger: TCTCCAGGCACCAGGAACCCATCCTGAATGGGGGAG...CCAGGAAGGTGGGAGAACCTCAGGTAGAGACATCGAGTACCTTGATTGTCTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp CTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCTTGTTGCCATAGGTCCTaGCGCAGTGGAACGCTGCTC +
Preference number: 4 (lower is better)
Translates to: LRGHSLYGPWDAVGFWLPCCHRS*RSGTLL
Trigger: GAGCAGCGTTCCACTGCGCCAGGACCTATGGCAACA...AGGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp AAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCTCAGAGGCCTGTTGCCATAGGTCCTaGCGCAGTGGAACGCTGCTC +
Preference number: 4 (lower is better)
Translates to: KFWLQTTRETRTGTASEACCHRS*RSGTLL
Trigger: GAGCAGCGTTCCACTGCGCCAGGACCTATGGCAACA...GGCCTCTGAGGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp TTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTAGGGGAACACCGTGGTaGGTTTTAACATGGACCTTT +
Preference number: 4 (lower is better)
Translates to: FTALLSSPQRLFCGDTACRGTPW*VLTWTF
Trigger: AAAGGTCCATGTTAAAACCCACCACGGTGTTCCCCT...ACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp AAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCTCAGAGGCCTTCAGGATGGGTTCCTaGTGCCTGGAGACCTGGGGA +
Preference number: 4 (lower is better)
Translates to: KFWLQTTRETRTGTASEAFRMGS*CLETWG
Trigger: TCCCCAGGTCTCCAGGCACCAGGAACCCATCCTGAA...GGCCTCTGAGGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110043.8
3UTR CAA 72 bp CTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTaGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: LEKTRANLRGHS*YGPWDAVGFWL
Trigger: AAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR TCA 90 bp CAGAACTGGTACTGCCTCAGAGGCCGATGTAGTGCTTTCTGCCCTTGCCCCATAGCACGTTGGACTGTTTaGTTACTTCCTGGCAGATCT +
Preference number: 4 (lower is better)
Translates to: QNWYCLRGRCSAFCPCPIARWTV*LLPGRS
Trigger: AGATCTGCCAGGAAGTAATCAAACAGTCCAACGTGC...TATGGGGCAAGGGCAGAAAGCACTACATCGGCCTCTGAGGCAGTACCAGTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp CCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCTTCGGTCTTTTCTCTTaGACCGCAGACCACACACCG +
Preference number: 4 (lower is better)
Translates to: PQRTLFVWSMGCCRFLASFGLFS*TADHTP
Trigger: CGGTGTGTGGTCTGCGGTTCAAGAGAAAAGACCGAA...GGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp GGGCTTAACTCCCTAGAATTCCCAACTTCTAGATTCCCCAAAGTTGGCAGCCCTGGCGGTATCAGGAACTaGATGGGACGACCTCCACAA +
Preference number: 4 (lower is better)
Translates to: GLNSLEFPTSRFPKVGSPGGIRN*MGRPPQ
Trigger: TTGTGGAGGTCGTCCCATTCAGTTCCTGATACCGCC...AGGGCTGCCAACTTTGGGGAATCTAGAAGTTGGGAATTCTAGGGAGTTAAGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp CCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCATCTCACAAGCCACTTaGTTCCTGGTCCGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: PQRTLFVWSMGCCRFLASISQAT*FLVRLL
Trigger: AAGGAGCCGGACCAGGAAGCAAGTGGCTTGTGAGAT...GGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp CAGAACTGGTACTGCCTCAGAGGCCGATGTAGTGCTTTCTGCCCTTGCCCCATACGTCACGAAAGATCTTaGCACAGATCTCACAAGCCA +
Preference number: 4 (lower is better)
Translates to: QNWYCLRGRCSAFCPCPIRHERS*HRSHKP
Trigger: TGGCTTGTGAGATCTGTGGCAAGATCTTTCGTGACG...TATGGGGCAAGGGCAGAAAGCACTACATCGGCCTCTGAGGCAGTACCAGTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp AGCTTCCAGCAGCTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCGCTCAGAAGTGTaGACCTGCTTGATATGTCCA +
Preference number: 4 (lower is better)
Translates to: SFQQLEKTRANLRGHSLYGRSEV*TCLICP
Trigger: TGGACATATCAAGCAGGTGCACACTTCTGAGCGACC...ATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAGCTGCTGGAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp CAGAACTGGTACTGCCTCAGAGGCCGATGTAGTGCTTTCTGCCCTTGCCCCATATTTGTTTTTAGGGACTaGCACGTCGCAGGAGAAGGA +
Preference number: 4 (lower is better)
Translates to: QNWYCLRGRCSAFCPCPIFVFRD*HVAGEG
Trigger: TCCTTCTCCTGCGACGTGGCAGTCCCTAAAAACAAA...TATGGGGCAAGGGCAGAAAGCACTACATCGGCCTCTGAGGCAGTACCAGTTCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp TTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTAGAAGAGACATGTTCTaGTGGGGAGAGAAAGGTGAA +
Preference number: 4 (lower is better)
Translates to: FTALLSSPQRLFCGDTACRRDMF*WGEKGE
Trigger: TTCACCTTTCTCTCCCCAGCAGAACATGTCTCTTCT...ACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp TCAGATGAGAGTCTGTTTCTAAGACCACAGCAGGTGGGGTTAATGGAGGGAGGGTCTGGCCTTCTTTGTTaGCATAGGTCCTGGCGCAGT +
Preference number: 4 (lower is better)
Translates to: SDESLFLRPQQVGLMEGGSGLLC*HRSWRS
Trigger: ACTGCGCCAGGACCTATGGCAACAAAGAAGGCCAGA...CCCTCCCTCCATTAACCCCACCTGCTGTGGTCTTAGAAACAGACTCTCATCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR GCA 90 bp CCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCTCTGGCCTTCTTTGTTaGCATAGGTCCTGGCGCAGT +
Preference number: 4 (lower is better)
Translates to: PQRTLFVWSMGCCRFLASSGLLC*HRSWRS
Trigger: ACTGCGCCAGGACCTATGGCAACAAAGAAGGCCAGA...GGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGCCGTTTTTGCGTTGTTaGTTCAGGTTGTGCAGCATC +
Preference number: 4 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRPFLRC*FRLCSI
Trigger: GATGCTGCACAACCTGAACCAACAACGCAAAAACGG...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp AGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGGTCAGAAGTCCCAGGTaGGCGAAAGAGCATGATATC +
Preference number: 4 (lower is better)
Translates to: RRPGPTSEDTLCMVHGMLVRSPR*AKEHDI
Trigger: GATATCATGCTCTTTCGCCCACCTGGGACTTCTGAC...CAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAACAGGCAGAGAAGCTTaGCCCGCAATAGCAGCACCT +
Preference number: 4 (lower is better)
Translates to: GVRTPITEHQKFWLQTTRTGREA*PAIAAP
Trigger: AGGTGCTGCTATTGCGGGCCAAGCTTCTCTGCCTGT...TCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp TTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTATTCTCACCCAGCCTTaGAGGAGGAAGATCGATATA +
Preference number: 4 (lower is better)
Translates to: FTALLSSPQRLFCGDTACILTQP*RRKIDI
Trigger: TATATCGATCTTCCTCCTCCAAGGCTGGGTGAGAAT...ACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp TCAGATGAGAGTCTGTTTCTAAGACCACAGCAGGTGGGGTTAATGGAGGGAGGGAAGCCACTTGCTTCCTaGTCCGGCTCCTTTTTCTGG +
Preference number: 4 (lower is better)
Translates to: SDESLFLRPQQVGLMEGGKPLAS*SGSFFW
Trigger: CCAGAAAAAGGAGCCGGACCAGGAAGCAAGTGGCTT...CCCTCCCTCCATTAACCCCACCTGCTGTGGTCTTAGAAACAGACTCTCATCTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GGACTTAGAACGGAAGAAGCTCCCACATTCAGGGCATGGGTACTTCTTCTCCCCTCAAGTGATCTGGCCTaGAGAAACCTTTCCCACAGC +
Preference number: 4 (lower is better)
Translates to: GLRTEEAPTFRAWVLLLPSSDLA*RNLSHS
Trigger: GCTGTGGGAAAGGTTTCTCCAGGCCAGATCACTTGA...GGGGAGAAGAAGTACCCATGCCCTGAATGTGGGAGCTTCTTCCGTTCTAAGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR CCA 90 bp AGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTCAAGTGATCTGGCCTaGAGAAACCTTTCCCACAGC +
Preference number: 4 (lower is better)
Translates to: RRPGPTSEDTLCMVHGMLSSDLA*RNLSHS
Trigger: GCTGTGGGAAAGGTTTCTCCAGGCCAGATCACTTGA...CAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTCCATTCAAGTGATCTaGCCTGGAGAAACCTTTCCC +
Preference number: 4 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRSIQVI*PGETFP
Trigger: GGGAAAGGTTTCTCCAGGCCAGATCACTTGAATGGA...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTTAGAGTTGGGGTGAGGACATCCATTCAAGTGATCTaGCCTGGAGAAACCTTTCCC +
Preference number: 4 (lower is better)
Translates to: GPKLPSEAQECLRVGVRTSIQVI*PGETFP
Trigger: GGGAAAGGTTTCTCCAGGCCAGATCACTTGAATGGA...TGTCCTCACCCCAACTCTAAGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GGAATGAAAGAAGTGGGAGGGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTTACTTTCCACACACCTaGCAGGGCACCTTGTCTTCA +
Preference number: 4 (lower is better)
Translates to: GMKEVGGTKTTKRGPRVPYFPHT*QGTLSS
Trigger: TGAAGACAAGGTGCCCTGCCAGGTGTGTGGAAAGTA...AGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCCCTCCCACTTCTTTCATTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp AAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCTCAGAGGCCCTGTGCTTCTTCAGGTaGTCTGCCATGTATGCGGCC +
Preference number: 4 (lower is better)
Translates to: KFWLQTTRETRTGTASEALCFFR*SAMYAA
Trigger: GGCCGCATACATGGCAGACCACCTGAAGAAGCACAG...GGCCTCTGAGGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp CCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCTGCTACAGAAGTTGCTaGGCCCCTCACTGTGCTTCT +
Preference number: 4 (lower is better)
Translates to: PQRTLFVWSMGCCRFLASCYRSC*APHCAS
Trigger: AGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCA...GGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp GTAAGACAATCAAGGTACTCGATGTCTCTACCTGAGGTTCTCCCACCTTCCTGGTTCAGGATGGGTTCCTaGTGCCTGGAGACCTCGGTT +
Preference number: 4 (lower is better)
Translates to: VRQSRYSMSLPEVLPPSWFRMGS*CLETSV
Trigger: AACCGAGGTCTCCAGGCACCAGGAACCCATCCTGAA...CCAGGAAGGTGGGAGAACCTCAGGTAGAGACATCGAGTACCTTGATTGTCTTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR TCA 90 bp GGGCTTAACTCCCTAGAATTCCCAACTTCTAGATTCCCCAAAGTTGGCAGCCCTCGCCTAACTGGGCGCTaGACACAGACTCAAAGTACT +
Preference number: 4 (lower is better)
Translates to: GLNSLEFPTSRFPKVGSPRLTGR*TQTQST
Trigger: AGTACTTTGAGTCTGTGTTCAGCGCCCAGTTAGGCG...AGGGCTGCCAACTTTGGGGAATCTAGAAGTTGGGAATTCTAGGGAGTTAAGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR TCA 90 bp AAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCTCAGAGGCCTTCGGTCTTTTCTCTTaGACCGCAGACCACACACCG +
Preference number: 4 (lower is better)
Translates to: KFWLQTTRETRTGTASEAFGLFS*TADHTP
Trigger: CGGTGTGTGGTCTGCGGTTCAAGAGAAAAGACCGAA...GGCCTCTGAGGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp GTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAGTACGGTTTGCCCACTaGCCCATCATGGGACCTCAC +
Preference number: 4 (lower is better)
Translates to: VRTPITEHQKFWLQTTREVRFAH*PIMGPH
Trigger: GTGAGGTCCCATGATGGGTCAGTGGGCAAACCGTAC...TTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp GCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCAAGTGTGCACCTGCTTaGTATGTCCATTCAAGTGAT +
Preference number: 4 (lower is better)
Translates to: AFRKEHGAYRGGAFRKVVKCAPA*YVHSSD
Trigger: ATCACTTGAATGGACATATCAAGCAGGTGCACACTT...GACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp CTACAGGGGAGGGGCCTTCAGAAAGGTGGTCCTTCCTATCTCTACTTGAGAGCTTGTTGGTTCAGGTTGTaGAGCATCTCCGTACTGTGT +
Preference number: 4 (lower is better)
Translates to: LQGRGLQKGGPSYLYLRACWFRL*SISVLC
Trigger: ACACAGTACGGAGATGCTGCACAACCTGAACCAACA...AGCTCTCAAGTAGAGATAGGAAGGACCACCTTTCTGAAGGCCCCTCCCCTGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp CTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCTAGCGCCCGCCGTTTTTaGGTTGTTGGTTCAGGTTGT +
Preference number: 4 (lower is better)
Translates to: LRGHSLYGPWDAVGFWLPSARRF*VVGSGC
Trigger: ACAACCTGAACCAACAACGCAAAAACGGCGGGCGCT...AGGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GGGCTTAACTCCCTAGAATTCCCAACTTCTAGATTCCCCAAAGTTGGCAGCCCTATCTCACAAGCCACTTaGTTCCTGGTCCGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: GLNSLEFPTSRFPKVGSPISQAT*FLVRLL
Trigger: AAGGAGCCGGACCAGGAAGCAAGTGGCTTGTGAGAT...AGGGCTGCCAACTTTGGGGAATCTAGAAGTTGGGAATTCTAGGGAGTTAAGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp GGAATGAAAGAAGTGGGAGGGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTCGTCACGAAAGATCTTaGCACAGATCTCACAAGCCA +
Preference number: 4 (lower is better)
Translates to: GMKEVGGTKTTKRGPRVPRHERS*HRSHKP
Trigger: TGGCTTGTGAGATCTGTGGCAAGATCTTTCGTGACG...AGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCCCTCCCACTTCTTTCATTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GGTCAACCTGGGCTGCTCAAGTGTAAGACAATCAAGGTACTCGATGTCTCTACCTCTGGCCTTCTTTGTTaGCATAGGTCCTGGCGCAGT +
Preference number: 4 (lower is better)
Translates to: GQPGLLKCKTIKVLDVSTSGLLC*HRSWRS
Trigger: ACTGCGCCAGGACCTATGGCAACAAAGAAGGCCAGA...GGTAGAGACATCGAGTACCTTGATTGTCTTACACTTGAGCAGCCCAGGTTGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp TTAGCTTCCAGCAGCTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTCCGTTTTTGCGTTGTTaGTTCAGGTTGTGCAGCATC +
Preference number: 4 (lower is better)
Translates to: LASSSSRRPGPTSEDTLCPFLRC*FRLCSI
Trigger: GATGCTGCACAACCTGAACCAACAACGCAAAAACGG...ACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAGCTGCTGGAAGCTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTGTTTGATTACTTCCTaGCAGATCTCGATGACCGAC +
Preference number: 4 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRCLITS*QISMTD
Trigger: GTCGGTCATCGAGATCTGCCAGGAAGTAATCAAACA...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGATTCTCACCCAGCCTTaGAGGAGGAAGATCGATATA +
Preference number: 4 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRILTQP*RRKIDI
Trigger: TATATCGATCTTCCTCCTCCAAGGCTGGGTGAGAAT...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GTTGGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAAGCCACTTGCTTCCTaGTCCGGCTCCTTTTTCTGG +
Preference number: 4 (lower is better)
Translates to: VGVRTPITEHQKFWLQTTKPLAS*SGSFFW
Trigger: CCAGAAAAAGGAGCCGGACCAGGAAGCAAGTGGCTT...AGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp GAGTGTCTACCTGCTCTGTCAGTCCCTAAAGCCATGTATCACAATACAATACTGCCTGGCAGATCTCGATaGCCGACCTCATCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: ECLPALSVPKAMYHNTILPGRSR*PTSSAG
Trigger: TCCTGCTGATGAGGTCGGTCATCGAGATCTGCCAGG...CAGTATTGTATTGTGATACATGGCTTTAGGGACTGACAGAGCAGGTAGACACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR TCA 90 bp CAGAACTGGTACTGCCTCAGAGGCCGATGTAGTGCTTTCTGCCCTTGCCCCATAAAGTGTGCACCTGCTTaGTATGTCCATTCAAGTGAT +
Preference number: 4 (lower is better)
Translates to: QNWYCLRGRCSAFCPCPIKCAPA*YVHSSD
Trigger: ATCACTTGAATGGACATATCAAGCAGGTGCACACTT...TATGGGGCAAGGGCAGAAAGCACTACATCGGCCTCTGAGGCAGTACCAGTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GAGTGTCTACCTGCTCTGTCAGTCCCTAAAGCCATGTATCACAATACAATACTGACTCAAAGTACTCGCTaGAGGCAGCCAGTACGGCGC +
Preference number: 4 (lower is better)
Translates to: ECLPALSVPKAMYHNTILTQSTR*RQPVRR
Trigger: GCGCCGTACTGGCTGCCTGCAGCGAGTACTTTGAGT...CAGTATTGTATTGTGATACATGGCTTTAGGGACTGACAGAGCAGGTAGACACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp GAGTGTCTACCTGCTCTGTCAGTCCCTAAAGCCATGTATCACAATACAATACTGACATGGAAGGATGCCTaGTTCCCTCAAGCCCCCTGG +
Preference number: 4 (lower is better)
Translates to: ECLPALSVPKAMYHNTILTWKDA*FPQAPW
Trigger: CCAGGGGGCTTGAGGGAAGCAGGCATCCTTCCATGT...CAGTATTGTATTGTGATACATGGCTTTAGGGACTGACAGAGCAGGTAGACACTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp GGGCTTAACTCCCTAGAATTCCCAACTTCTAGATTCCCCAAAGTTGGCAGCCCTGGTCGCTCAGAAGTGTaGACCTGCTTGATATGTCCA +
Preference number: 4 (lower is better)
Translates to: GLNSLEFPTSRFPKVGSPGRSEV*TCLICP
Trigger: TGGACATATCAAGCAGGTGCACACTTCTGAGCGACC...AGGGCTGCCAACTTTGGGGAATCTAGAAGTTGGGAATTCTAGGGAGTTAAGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp GTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAGTGGTCTGCCATGTATaGGGCCCGCAAGTACTTTCC +
Preference number: 4 (lower is better)
Translates to: VRTPITEHQKFWLQTTREVVCHV*GPQVLS
Trigger: GGAAAGTACTTGCGGGCCGCATACATGGCAGACCAC...TTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR GCA 90 bp ACGCTGACTGAACAATCTGAAATCCAAAGGACTCAAGAAGAGACATGTTCTGCTCTGGGCCCCTCACTGTaGTTCTTCAGGTGGTCTGCC +
Preference number: 4 (lower is better)
Translates to: TLTEQSEIQRTQEETCSALGPSL*FFRWSA
Trigger: GGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAG...AGCAGAACATGTCTCTTCTTGAGTCCTTTGGATTTCAGATTGTTCAGTCAGCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR GCA 90 bp GAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGAAGAGACATGTTCTaGTGGGGAGAGAAAGGTGAA +
Preference number: 4 (lower is better)
Translates to: EDQGQPQRTLFVWSMGCCRRDMF*WGEKGE
Trigger: TTCACCTTTCTCTCCCCAGCAGAACATGTCTCTTCT...ACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp AGGTTTCTGGCTTCCTTAAAAATAGTTGGCCATAAGAGGGTAGAGACCCTACTTCCGCCGTCGCCTAACTaGGCGCTGAACACAGACTCA +
Preference number: 4 (lower is better)
Translates to: RFLASLKIVGHKRVETLLPPSPN*ALNTDS
Trigger: TGAGTCTGTGTTCAGCGCCCAGTTAGGCGACGGCGG...AAGTAGGGTCTCTACCCTCTTATGGCCAACTATTTTTAAGGAAGCCAGAAACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GAGTGTCTACCTGCTCTGTCAGTCCCTAAAGCCATGTATCACAATACAATACTGCGGGGTCCTCGGAGATaGGTAACCCATTCTCACCCA +
Preference number: 4 (lower is better)
Translates to: ECLPALSVPKAMYHNTILRGPRR*VTHSHP
Trigger: TGGGTGAGAATGGGTTACCCATCTCCGAGGACCCCG...CAGTATTGTATTGTGATACATGGCTTTAGGGACTGACAGAGCAGGTAGACACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp CCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGCTTCTCCCCCGAGTaGGAAAGCTTATGCCGGTTG +
Preference number: 4 (lower is better)
Translates to: PITEHQKFWLQTTRETRTGFSPE*ESLCRL
Trigger: CAACCGGCATAAGCTTTCCCACTCGGGGGAGAAGCC...AGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGATCAAGTGATCTGGCCTaGAGAAACCTTTCCCACAGC +
Preference number: 4 (lower is better)
Translates to: GVRTPITEHQKFWLQTTRSSDLA*RNLSHS
Trigger: GCTGTGGGAAAGGTTTCTCCAGGCCAGATCACTTGA...TCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GAGGGGCCTTCAGAAAGGTGGTCCTTCCTATCTCTACTTGAGAGCTTTGAGCTGTCCATTCAAGTGATCTaGCCTGGAGAAACCTTTCCC +
Preference number: 4 (lower is better)
Translates to: EGPSERWSFLSLLESFELSIQVI*PGETFP
Trigger: GGGAAAGGTTTCTCCAGGCCAGATCACTTGAATGGA...CAGCTCAAAGCTCTCAAGTAGAGATAGGAAGGACCACCTTTCTGAAGGCCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR TCA 90 bp GTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAACGCCTAACTGGGCGCTaGACACAGACTCAAAGTACT +
Preference number: 4 (lower is better)
Translates to: VRTPITEHQKFWLQTTRERLTGR*TQTQST
Trigger: AGTACTTTGAGTCTGTGTTCAGCGCCCAGTTAGGCG...TTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp GGTCAACCTGGGCTGCTCAAGTGTAAGACAATCAAGGTACTCGATGTCTCTACCCGAACACTTTGGAACTaGTGGTGTGCATCTCCAGTT +
Preference number: 4 (lower is better)
Translates to: GQPGLLKCKTIKVLDVSTRTLWN*WCASPV
Trigger: AACTGGAGATGCACACCATCAGTTCCAAAGTGTTCG...GGTAGAGACATCGAGTACCTTGATTGTCTTACACTTGAGCAGCCCAGGTTGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp GTTGGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTGCACGTTGGACTGTTTaGTTACTTCCTGGCAGATCT +
Preference number: 4 (lower is better)
Translates to: VGVRTPITEHQKFWLQTTARWTV*LLPGRS
Trigger: AGATCTGCCAGGAAGTAATCAAACAGTCCAACGTGC...AGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp TTGGGTCTCTCAGTATTTCTACAGAGAGTATCAGATGAGAGTCTGTTTCTAAGAGGCACCTTGTCTTCATaGCAGGCCAGGTGGGAGCGC +
Preference number: 4 (lower is better)
Translates to: LGLSVFLQRVSDESLFLRGTLSS*QARWER
Trigger: GCGCTCCCACCTGGCCTGTCATGAAGACAAGGTGCC...TCTTAGAAACAGACTCTCATCTGATACTCTCTGTAGAAATACTGAGAGACCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR GCA 90 bp AAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCTCAGAGGCCTGTTGGTTCAGGTTGTaGAGCATCTCCGTACTGTGT +
Preference number: 4 (lower is better)
Translates to: KFWLQTTRETRTGTASEACWFRL*SISVLC
Trigger: ACACAGTACGGAGATGCTGCACAACCTGAACCAACA...GGCCTCTGAGGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp CCCAAGGGCACGGACATGCACCTTCTGGATGTGTTTGTTCAAGTAGGACTTAGATGTTGGTTCAGGTTGTaGAGCATCTCCGTACTGTGT +
Preference number: 4 (lower is better)
Translates to: PKGTDMHLLDVFVQVGLRCWFRL*SISVLC
Trigger: ACACAGTACGGAGATGCTGCACAACCTGAACCAACA...TCTAAGTCCTACTTGAACAAACACATCCAGAAGGTGCATGTCCGTGCCCTTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR GCA 90 bp AGGTTTCTGGCTTCCTTAAAAATAGTTGGCCATAAGAGGGTAGAGACCCTACTTACTCAAAGTACTCGCTaGAGGCAGCCAGTACGGCGC +
Preference number: 4 (lower is better)
Translates to: RFLASLKIVGHKRVETLLTQSTR*RQPVRR
Trigger: GCGCCGTACTGGCTGCCTGCAGCGAGTACTTTGAGT...AAGTAGGGTCTCTACCCTCTTATGGCCAACTATTTTTAAGGAAGCCAGAAACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp CTACAGGGGAGGGGCCTTCAGAAAGGTGGTCCTTCCTATCTCTACTTGAGAGCTTCAGAAGTGTGCACCTaGTTGATATGTCCATTCAAG +
Preference number: 4 (lower is better)
Translates to: LQGRGLQKGGPSYLYLRASEVCT*LICPFK
Trigger: CTTGAATGGACATATCAAGCAGGTGCACACTTCTGA...AGCTCTCAAGTAGAGATAGGAAGGACCACCTTTCTGAAGGCCCCTCCCCTGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp ACGCTGACTGAACAATCTGAAATCCAAAGGACTCAAGAAGAGACATGTTCTGCTCGGGGTCCTCGGAGATaGGTAACCCATTCTCACCCA +
Preference number: 4 (lower is better)
Translates to: TLTEQSEIQRTQEETCSARGPRR*VTHSHP
Trigger: TGGGTGAGAATGGGTTACCCATCTCCGAGGACCCCG...AGCAGAACATGTCTCTTCTTGAGTCCTTTGGATTTCAGATTGTTCAGTCAGCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR CCA 90 bp GTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAATGCTACAGAAGTTGCTaGGCCCCTCACTGTGCTTCT +
Preference number: 4 (lower is better)
Translates to: VRTPITEHQKFWLQTTRECYRSC*APHCAS
Trigger: AGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCA...TTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp GGTCAACCTGGGCTGCTCAAGTGTAAGACAATCAAGGTACTCGATGTCTCTACCAGAGACATGTTCTGCTaGGGAGAGAAAGGTGAACCA +
Preference number: 4 (lower is better)
Translates to: GQPGLLKCKTIKVLDVSTRDMFC*GEKGEP
Trigger: TGGTTCACCTTTCTCTCCCCAGCAGAACATGTCTCT...GGTAGAGACATCGAGTACCTTGATTGTCTTACACTTGAGCAGCCCAGGTTGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp GAGTGTCTACCTGCTCTGTCAGTCCCTAAAGCCATGTATCACAATACAATACTGTTCGGTCTTTTCTCTTaGACCGCAGACCACACACCG +
Preference number: 4 (lower is better)
Translates to: ECLPALSVPKAMYHNTILFGLFS*TADHTP
Trigger: CGGTGTGTGGTCTGCGGTTCAAGAGAAAAGACCGAA...CAGTATTGTATTGTGATACATGGCTTTAGGGACTGACAGAGCAGGTAGACACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp TTGGGTCTCTCAGTATTTCTACAGAGAGTATCAGATGAGAGTCTGTTTCTAAGAGGCCACATGGAAGGATaGCTGCTTCCCTCAAGCCCC +
Preference number: 4 (lower is better)
Translates to: LGLSVFLQRVSDESLFLRGHMEG*LLPSSP
Trigger: GGGGCTTGAGGGAAGCAGGCATCCTTCCATGTGGCC...TCTTAGAAACAGACTCTCATCTGATACTCTCTGTAGAAATACTGAGAGACCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GTTCAAGTAGGACTTAGAACGGAAGAAGCTCCCACATTCAGGGCATGGGTACTTCGTCACGAAAGATCTTaGCACAGATCTCACAAGCCA +
Preference number: 4 (lower is better)
Translates to: VQVGLRTEEAPTFRAWVLRHERS*HRSHKP
Trigger: TGGCTTGTGAGATCTGTGGCAAGATCTTTCGTGACG...AAGTACCCATGCCCTGAATGTGGGAGCTTCTTCCGTTCTAAGTCCTACTTGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR GCA 90 bp CCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTCCAAGGGCACGGACATaGACCTTCTGGATGTGTTTG +
Preference number: 4 (lower is better)
Translates to: PITEHQKFWLQTTRETRTPRART*TFWMCL
Trigger: CAAACACATCCAGAAGGTGCATGTCCGTGCCCTTGG...AGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GGGCTTAACTCCCTAGAATTCCCAACTTCTAGATTCCCCAAAGTTGGCAGCCCTATTCTCACCCAGCCTTaGAGGAGGAAGATCGATATA +
Preference number: 4 (lower is better)
Translates to: GLNSLEFPTSRFPKVGSPILTQP*RRKIDI
Trigger: TATATCGATCTTCCTCCTCCAAGGCTGGGTGAGAAT...AGGGCTGCCAACTTTGGGGAATCTAGAAGTTGGGAATTCTAGGGAGTTAAGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp CCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTAAGCCACTTGCTTCCTaGTCCGGCTCCTTTTTCTGG +
Preference number: 4 (lower is better)
Translates to: PITEHQKFWLQTTRETRTKPLAS*SGSFFW
Trigger: CCAGAAAAAGGAGCCGGACCAGGAAGCAAGTGGCTT...AGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAATACTTTCCACACACCTaGCAGGGCACCTTGTCTTCA +
Preference number: 4 (lower is better)
Translates to: VRTPITEHQKFWLQTTREYFPHT*QGTLSS
Trigger: TGAAGACAAGGTGCCCTGCCAGGTGTGTGGAAAGTA...TTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp CCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTTGCTACAGAAGTTGCTaGGCCCCTCACTGTGCTTCT +
Preference number: 4 (lower is better)
Translates to: PITEHQKFWLQTTRETRTCYRSC*APHCAS
Trigger: AGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCA...AGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CCA 90 bp AGGTTTCTGGCTTCCTTAAAAATAGTTGGCCATAAGAGGGTAGAGACCCTACTTTGGGTTCCTGGTGCCTaGAGACCTCGGTTACAGATG +
Preference number: 4 (lower is better)
Translates to: RFLASLKIVGHKRVETLLWVPGA*RPRLQM
Trigger: CATCTGTAACCGAGGTCTCCAGGCACCAGGAACCCA...AAGTAGGGTCTCTACCCTCTTATGGCCAACTATTTTTAAGGAAGCCAGAAACCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR TCA 90 bp GTAAGACAATCAAGGTACTCGATGTCTCTACCTGAGGTTCTCCCACCTTCCTGGAAGTGTGCACCTGCTTaGTATGTCCATTCAAGTGAT +
Preference number: 4 (lower is better)
Translates to: VRQSRYSMSLPEVLPPSWKCAPA*YVHSSD
Trigger: ATCACTTGAATGGACATATCAAGCAGGTGCACACTT...CCAGGAAGGTGGGAGAACCTCAGGTAGAGACATCGAGTACCTTGATTGTCTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp GAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCAAGTGTGCACCTGCTTaGTATGTCCATTCAAGTGAT +
Preference number: 4 (lower is better)
Translates to: EHQKFWLQTTRETRTGTAKCAPA*YVHSSD
Trigger: ATCACTTGAATGGACATATCAAGCAGGTGCACACTT...GGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp GTTGGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTTCAGAAGTGTGCACCTaGTTGATATGTCCATTCAAG +
Preference number: 4 (lower is better)
Translates to: VGVRTPITEHQKFWLQTTSEVCT*LICPFK
Trigger: CTTGAATGGACATATCAAGCAGGTGCACACTTCTGA...AGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp AAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCTCAGAGGCCTCAGAAGTGTGCACCTaGTTGATATGTCCATTCAAG +
Preference number: 4 (lower is better)
Translates to: KFWLQTTRETRTGTASEASEVCT*LICPFK
Trigger: CTTGAATGGACATATCAAGCAGGTGCACACTTCTGA...GGCCTCTGAGGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR GCA 90 bp CCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTCGCTCAGAAGTGTaGACCTGCTTGATATGTCCA +
Preference number: 4 (lower is better)
Translates to: PITEHQKFWLQTTRETRTGRSEV*TCLICP
Trigger: TGGACATATCAAGCAGGTGCACACTTCTGAGCGACC...AGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GAGTGTCTACCTGCTCTGTCAGTCCCTAAAGCCATGTATCACAATACAATACTGGTCAGAAGTCCCAGGTaGGCGAAAGAGCATGATATC +
Preference number: 4 (lower is better)
Translates to: ECLPALSVPKAMYHNTILVRSPR*AKEHDI
Trigger: GATATCATGCTCTTTCGCCCACCTGGGACTTCTGAC...CAGTATTGTATTGTGATACATGGCTTTAGGGACTGACAGAGCAGGTAGACACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CCA 90 bp TTGGGTCTCTCAGTATTTCTACAGAGAGTATCAGATGAGAGTCTGTTTCTAAGAGGCACTCTGTTTCTCTaGCGTCTTCAGGTCGCTGGC +
Preference number: 4 (lower is better)
Translates to: LGLSVFLQRVSDESLFLRGTLFL*RLQVAG
Trigger: GCCAGCGACCTGAAGACGCCAGAGAAACAGAGTGCC...TCTTAGAAACAGACTCTCATCTGATACTCTCTGTAGAAATACTGAGAGACCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR TCA 90 bp CCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTCTCTCAATCAGATCCTaGTGTGAGCATTTCTGGCCT +
Preference number: 4 (lower is better)
Translates to: PITEHQKFWLQTTRETRTLSIRS*CEHFWP
Trigger: AGGCCAGAAATGCTCACATCAGGATCTGATTGAGAG...AGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAATGTTTGATTACTTCCTaGCAGATCTCGATGACCGAC +
Preference number: 4 (lower is better)
Translates to: VRTPITEHQKFWLQTTRECLITS*QISMTD
Trigger: GTCGGTCATCGAGATCTGCCAGGAAGTAATCAAACA...TTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp AGGTTTCTGGCTTCCTTAAAAATAGTTGGCCATAAGAGGGTAGAGACCCTACTTGTCAGAAGTCCCAGGTaGGCGAAAGAGCATGATATC +
Preference number: 4 (lower is better)
Translates to: RFLASLKIVGHKRVETLLVRSPR*AKEHDI
Trigger: GATATCATGCTCTTTCGCCCACCTGGGACTTCTGAC...AAGTAGGGTCTCTACCCTCTTATGGCCAACTATTTTTAAGGAAGCCAGAAACCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp TTGGGTCTCTCAGTATTTCTACAGAGAGTATCAGATGAGAGTCTGTTTCTAAGATTCCCTCAAGCCCCCTaGAGACCCAAACATGGAGTC +
Preference number: 4 (lower is better)
Translates to: LGLSVFLQRVSDESLFLRFPQAP*RPKHGV
Trigger: GACTCCATGTTTGGGTCTCCAGGGGGCTTGAGGGAA...TCTTAGAAACAGACTCTCATCTGATACTCTCTGTAGAAATACTGAGAGACCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp GAGTGTCTACCTGCTCTGTCAGTCCCTAAAGCCATGTATCACAATACAATACTGGTATCAGGAACTGAATaGGACGACCTCCACAAAGCA +
Preference number: 4 (lower is better)
Translates to: ECLPALSVPKAMYHNTILVSGTE*DDLHKA
Trigger: TGCTTTGTGGAGGTCGTCCCATTCAGTTCCTGATAC...CAGTATTGTATTGTGATACATGGCTTTAGGGACTGACAGAGCAGGTAGACACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR GCA 90 bp AGGTTTCTGGCTTCCTTAAAAATAGTTGGCCATAAGAGGGTAGAGACCCTACTTTTTGTTTTTAGGGACTaGCACGTCGCAGGAGAAGGA +
Preference number: 4 (lower is better)
Translates to: RFLASLKIVGHKRVETLLFVFRD*HVAGEG
Trigger: TCCTTCTCCTGCGACGTGGCAGTCCCTAAAAACAAA...AAGTAGGGTCTCTACCCTCTTATGGCCAACTATTTTTAAGGAAGCCAGAAACCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR CCA 90 bp ACGCTGACTGAACAATCTGAAATCCAAAGGACTCAAGAAGAGACATGTTCTGCTCCGTTTTTGCGTTGTTaGTTCAGGTTGTGCAGCATC +
Preference number: 4 (lower is better)
Translates to: TLTEQSEIQRTQEETCSAPFLRC*FRLCSI
Trigger: GATGCTGCACAACCTGAACCAACAACGCAAAAACGG...AGCAGAACATGTCTCTTCTTGAGTCCTTTGGATTTCAGATTGTTCAGTCAGCGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR CCA 90 bp AGGTTTCTGGCTTCCTTAAAAATAGTTGGCCATAAGAGGGTAGAGACCCTACTTTGTTTGATTACTTCCTaGCAGATCTCGATGACCGAC +
Preference number: 4 (lower is better)
Translates to: RFLASLKIVGHKRVETLLCLITS*QISMTD
Trigger: GTCGGTCATCGAGATCTGCCAGGAAGTAATCAAACA...AAGTAGGGTCTCTACCCTCTTATGGCCAACTATTTTTAAGGAAGCCAGAAACCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GCCCAGGTCCCCCAAGGGACCCCCAAGGGCACGGACATGCACCTTCTGGATGTGCTCATCAGCAGGAACTaGGCGGCCGTCATGAGCTCG +
Preference number: 5 (lower is better)
Translates to: AQVPQGTPKGTDMHLLDVLISRN*AAVMSS
Trigger: CGAGCTCATGACGGCCGCCAAGTTCCTGCTGATGAG...CACATCCAGAAGGTGCATGTCCGTGCCCTTGGGGGTCCCTTGGGGGACCTGGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR CAA 90 bp AAGCAGGAGTCTCCAGCCAGCCATCATTGCCTCCACCTCTCCAGAGGGACCCAGGTGCTGGGCCTCATGTaGCCGGAGCCGGTTGGCGTC +
Preference number: 5 (lower is better)
Translates to: KQESPASHHCLHLSRGTQVLGLM*PEPVGV
Trigger: GACGCCAACCGGCTCCGGCAACATGAGGCCCAGCAC...CTGGGTCCCTCTGGAGAGGTGGAGGCAATGATGGCTGGCTGGAGACTCCTGCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS CCA 90 bp ACCATGGGCAATCTGTCCACCCCGGGTAACACAGGCAGAGAAGCTTaGCCCGCAATAGCAGCACCTGTGGCCCTGGCAGCCTCCTCCTCG +
Preference number: 5 (lower is better)
Translates to: TMGNLSTPGNTGREA*PAIAAPVALAASSS
Trigger: CGAGGAGGAGGCTGCCAGGGCCACAGGTGCTGCTATTGCGGGCCAAGCTTCTCTGCCTGTGTTACCCGGGGTGGACAGATTGCCCATGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp TCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTCGTGCTGGGCCTCATGTaGCCGGAGCCGGTTGGCGTC +
Preference number: 5 (lower is better)
Translates to: SQHCSAVPSGCSVGTQHVVLGLM*PEPVGV
Trigger: GACGCCAACCGGCTCCGGCAACATGAGGCCCAGCAC...GACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS TCA 90 bp CCAGCCTTGGAGGAGGAAGATCGATATAGCCCAACTGGAGGCTTGTaGCGCCGTGCTGGGCCTCATGTTGCCGGAGCCGGTTGGCGTCAG +
Preference number: 5 (lower is better)
Translates to: PALEEEDRYSPTGGL*RRAGPHVAGAGWRQ
Trigger: CTGACGCCAACCGGCTCCGGCAACATGAGGCCCAGCACGGCGTCACAAGCCTCCAGTTGGGCTATATCGATCTTCCTCCTCCAAGGCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS TCA 90 bp GCCCGCAAGTACTTTCCACACACCTGGCAGGGCACCTTGTCTTCATaGCAGGCCAGGTGGGAGCGCAGGCGGTCTCGAGTCGCAAAGGAG +
Preference number: 5 (lower is better)
Translates to: ARKYFPHTWQGTLSS*QARWERRRSRVAKE
Trigger: CTCCTTTGCGACTCGAGACCGCCTGCGCTCCCACCTGGCCTGTCATGAAGACAAGGTGCCCTGCCAGGTGTGTGGAAAGTACTTGCGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
ENSMUST00000154319.2
CDS CCA 90 bp CCGGAGCCGGTTGGCGTCAGTGAACACCTTCCCGCACAGGCCACATaGAAGGATGCCTGCTTCCCTCAAGCCCCCTGGAGACCCAAACAT +
Preference number: 5 (lower is better)
Translates to: PEPVGVSEHLPAQAT*KDACFPQAPWRPKH
Trigger: ATGTTTGGGTCTCCAGGGGGCTTGAGGGAAGCAGGCATCCTTCCATGTGGCCTGTGCGGGAAGGTGTTCACTGACGCCAACCGGCTCCGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 90 bp GGCGTCAGTGAACACCTTCCCGCACAGGCCACATGGAAGGATGCCTaGTTCCCTCAAGCCCCCTGGAGACCCAAACATGGAGTCCAGCAG +
Preference number: 5 (lower is better)
Translates to: GVSEHLPAQATWKDA*FPQAPWRPKHGVQQ
Trigger: CTGCTGGACTCCATGTTTGGGTCTCCAGGGGGCTTGAGGGAAGCAGGCATCCTTCCATGTGGCCTGTGCGGGAAGGTGTTCACTGACGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 90 bp CCCACATCAGCAGGACCACCATCTGCAGCTCCGCCGTCGCCTAACTaGGCGCTGAACACAGACTCAAAGTACTCGCTGCAGGCAGCCAGT +
Preference number: 5 (lower is better)
Translates to: PTSAGPPSAAPPSPN*ALNTDSKYSLQAAS
Trigger: ACTGGCTGCCTGCAGCGAGTACTTTGAGTCTGTGTTCAGCGCCCAGTTAGGCGACGGCGGAGCTGCAGATGGTGGTCCTGCTGATGTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCATGGAGTCCAGCAGGTaGGCCTTCCTGGGGCGTCCC +
Preference number: 5 (lower is better)
Translates to: AFRKEHGAYRGGAFRKVVMESSR*AFLGRP
Trigger: GGGACGCCCCAGGAAGGCCAACCTGCTGGACTCCAT...GACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS TCA 90 bp CCAAAGGGAAGCCCAAGTCAGAAGTCCCAGGTGGGCGAAAGAGCATaGTATCAGCCCGGGCAGGGGGCACGAGGATCTGCACGTTGGACT +
Preference number: 5 (lower is better)
Translates to: PKGSPSQKSQVGERA*YQPGQGARGSARWT
Trigger: AGTCCAACGTGCAGATCCTCGTGCCCCCTGCCCGGGCTGATATCATGCTCTTTCGCCCACCTGGGACTTCTGACTTGGGCTTCCCTTTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 90 bp GTTGCTGGGCCCCTCACTGTGCTTCTTCAGGTGGTCTGCCATGTATaGGGCCCGCAAGTACTTTCCACACACCTGGCAGGGCACCTTGTC +
Preference number: 5 (lower is better)
Translates to: VAGPLTVLLQVVCHV*GPQVLSTHLAGHLV
Trigger: GACAAGGTGCCCTGCCAGGTGTGTGGAAAGTACTTGCGGGCCGCATACATGGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
ENSMUST00000154319.2
CDS GCA 90 bp TTTCTGGCCTTCTTTGTTGCCATAGGTCCTGGCGCAGTGGAACGCTaGTCCCCCATTCAGGATGGGTTCCTGGTGCCTGGAGACCTGGGG +
Preference number: 5 (lower is better)
Translates to: FLAFFVAIGPGAVER*SPIQDGFLVPGDLG
Trigger: CCCCAGGTCTCCAGGCACCAGGAACCCATCCTGAATGGGGGAGCAGCGTTCCACTGCGCCAGGACCTATGGCAACAAAGAAGGCCAGAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110043.8
CDS CCA 90 bp CCCGTTGGTCATGTCCAAAGGGAAGCCCAAGTCAGAAGTCCCAGGTaGGCGAAAGAGCATGATATCAGCCCGGGCAGGGGGCACGAGGAT +
Preference number: 5 (lower is better)
Translates to: PVGHVQREAQVRSPR*AKEHDISPGRGHED
Trigger: ATCCTCGTGCCCCCTGCCCGGGCTGATATCATGCTCTTTCGCCCACCTGGGACTTCTGACTTGGGCTTCCCTTTGGACATGACCAACGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 90 bp CAGCCTCCTCCTCGGGCTGCATACTGCCAGCAATACCGTTACTGTTaGCTGCCATGGCTGCCCCGTTGGTCATGTCCAAAGGGAAGCCCA +
Preference number: 5 (lower is better)
Translates to: QPPPRAAYCQQYRYC*LPWLPRWSCPKGSP
Trigger: TGGGCTTCCCTTTGGACATGACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTGCTGGCAGTATGCAGCCCGAGGAGGAGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp CAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCCTTCCGCCATGGCTGCCCCGTaGGTCATGTCCAAAGGGAAG +
Preference number: 5 (lower is better)
Translates to: QKGTWRLQGRGLQKGGPSAMAAP*VMSKGK
Trigger: CTTCCCTTTGGACATGACCAACGGGGCAGCCATGGC...GGAAGGACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CAA 90 bp GGAGAGCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGCGTCCCCGGCCTCGCTaGCTAGTTAGTGGAGGTGCA +
Preference number: 5 (lower is better)
Translates to: GEHSERNMAPTGEGPSERRPRPR*LVSGGA
Trigger: TGCACCTCCACTAACTAGCAAGCGAGGCCGGGGACG...CCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGCTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CAA 90 bp GCCCAGGTCCCCCAAGGGACCCCCAAGGGCACGGACATGCACCTTCTGGATGTGATTCGGTCTTTTCTCTaGAACCGCAGACCACACACC +
Preference number: 5 (lower is better)
Translates to: AQVPQGTPKGTDMHLLDVIRSFL*NRRPHT
Trigger: GGTGTGTGGTCTGCGGTTCAAGAGAAAAGACCGAAT...CACATCCAGAAGGTGCATGTCCGTGCCCTTGGGGGTCCCTTGGGGGACCTGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS GCA 90 bp CTCCTCCTCGGGCTGCATACTGCCAGCAATACCGTTACTGTTGGCTaGCATGGCTGCCCCGTTGGTCATGTCCAAAGGGAAGCCCAAGTC +
Preference number: 5 (lower is better)
Translates to: LLLGLHTASNTVTVG*HGCPVGHVQREAQV
Trigger: GACTTGGGCTTCCCTTTGGACATGACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTGCTGGCAGTATGCAGCCCGAGGAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 90 bp GCTACAGAAGTTGCTGGGCCCCTCACTGTGCTTCTTCAGGTGGTCTaGCATGTATGCGGCCCGCAAGTACTTTCCACACACCTGGCAGGG +
Preference number: 5 (lower is better)
Translates to: ATEVAGPLTVLLQVV*HVCGPQVLSTHLAG
Trigger: CCCTGCCAGGTGTGTGGAAAGTACTTGCGGGCCGCATACATGGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
ENSMUST00000154319.2
CDS GCA 90 bp TTTCTGGCCTTCTTTGTTGCCATAGGTCCTGGCGCAGTGGAACGCTaGTCCCCCATTCAGGATGGGTTCCTGGTGCCTGGAGACCTCGGT +
Preference number: 5 (lower is better)
Translates to: FLAFFVAIGPGAVER*SPIQDGFLVPGDLG
Trigger: ACCGAGGTCTCCAGGCACCAGGAACCCATCCTGAATGGGGGAGCAGCGTTCCACTGCGCCAGGACCTATGGCAACAAAGAAGGCCAGAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS CCA 90 bp TGCCATAGGTCCTGGCGCAGTGGAACGCTGCTCCCCCATTCAGGATaGGTTCCTGGTGCCTGGAGACCTCGGTTACAGATGCTACAGAAG +
Preference number: 5 (lower is better)
Translates to: CHRSWRSGTLLPHSG*VPGAWRPRLQMLQK
Trigger: CTTCTGTAGCATCTGTAACCGAGGTCTCCAGGCACCAGGAACCCATCCTGAATGGGGGAGCAGCGTTCCACTGCGCCAGGACCTATGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR CAA 90 bp AAGCAGGAGTCTCCAGCCAGCCATCATTGCCTCCACCTCTCCAGAGGGACCCAGCCCGCCGTTTTTGCGTaGTTGGTTCAGGTTGTGCAG +
Preference number: 5 (lower is better)
Translates to: KQESPASHHCLHLSRGTQPAVFA*LVQVVQ
Trigger: CTGCACAACCTGAACCAACAACGCAAAAACGGCGGG...CTGGGTCCCTCTGGAGAGGTGGAGGCAATGATGGCTGGCTGGAGACTCCTGCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CAA 90 bp AAGCAGGAGTCTCCAGCCAGCCATCATTGCCTCCACCTCTCCAGAGGGACCCAGAAGCGCCCGCCGTTTTaGCGTTGTTGGTTCAGGTTG +
Preference number: 5 (lower is better)
Translates to: KQESPASHHCLHLSRGTQKRPPF*RCWFRL
Trigger: CAACCTGAACCAACAACGCAAAAACGGCGGGCGCTT...CTGGGTCCCTCTGGAGAGGTGGAGGCAATGATGGCTGGCTGGAGACTCCTGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CAA 90 bp GGAGAGCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGCTCATCAGCAGGAACTaGGCGGCCGTCATGAGCTCG +
Preference number: 5 (lower is better)
Translates to: GEHSERNMAPTGEGPSERLISRN*AAVMSS
Trigger: CGAGCTCATGACGGCCGCCAAGTTCCTGCTGATGAG...CCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGCTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CAA 90 bp CCCATGGGCTGCTGGTCCACCTCAGGATCCACTAAAGATGATGCAAACGCTGACCGTCCCCGGCCTCGCTaGCTAGTTAGTGGAGGTGCA +
Preference number: 5 (lower is better)
Translates to: PMGCWSTSGSTKDDANADRPRPR*LVSGGA
Trigger: TGCACCTCCACTAACTAGCAAGCGAGGCCGGGGACG...GTCAGCGTTTGCATCATCTTTAGTGGATCCTGAGGTGGACCAGCAGCCCATGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093402.12
CDS-3UTR CAA 90 bp TTAGCTTCCAGCAGCTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGAGTCCAGCAGGTaGGCCTTCCTGGGGCGTCCC +
Preference number: 5 (lower is better)
Translates to: LASSSSRRPGPTSEDTLCMESSR*AFLGRP
Trigger: GGGACGCCCCAGGAAGGCCAACCTGCTGGACTCCAT...ACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAGCTGCTGGAAGCTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp CAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCCTTCCGATCTCACAAGCCACTaGCTTCCTGGTCCGGCTCCT +
Preference number: 5 (lower is better)
Translates to: QKGTWRLQGRGLQKGGPSDLTSH*LPGPAP
Trigger: AGGAGCCGGACCAGGAAGCAAGTGGCTTGTGAGATC...GGAAGGACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS GCA 90 bp CGTCGCCTACTCGTAGGAGCACGTCGCAAAAGCGCCCGCCGTTTTTaGGTTGTTGGTTCAGGTTGTGCAGCATCTCCGTACTGTGTCTGC +
Preference number: 5 (lower is better)
Translates to: RRLLVGARRKSARRF*VVGSGCAASPYCVC
Trigger: GCAGACACAGTACGGAGATGCTGCACAACCTGAACCAACAACGCAAAAACGGCGGGCGCTTTTGCGACGTGCTCCTACGAGTAGGCGACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 90 bp GGGCTGCATACTGCCAGCAATACCGTTACTGTTGGCTGCCATGGCTaGCCCGTTGGTCATGTCCAAAGGGAAGCCCAAGTCAGAAGTCCC +
Preference number: 5 (lower is better)
Translates to: GLHTASNTVTVGCHG*PVGHVQREAQVRSP
Trigger: GGGACTTCTGACTTGGGCTTCCCTTTGGACATGACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTGCTGGCAGTATGCAGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 90 bp GCAGGGGGCACGAGGATCTGCACGTTGGACTGTTTGATTACTTCCTaGCAGATCTCGATGACCGACCTCATCAGCAGGAACTTGGCGGCC +
Preference number: 5 (lower is better)
Translates to: AGGTRICTLDCLITS*QISMTDLISRNLAA
Trigger: GGCCGCCAAGTTCCTGCTGATGAGGTCGGTCATCGAGATCTGCCAGGAAGTAATCAAACAGTCCAACGTGCAGATCCTCGTGCCCCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 90 bp TACTGCCAGCAATACCGTTACTGTTGGCTGCCATGGCTGCCCCGTTaGTCATGTCCAAAGGGAAGCCCAAGTCAGAAGTCCCAGGTGGGC +
Preference number: 5 (lower is better)
Translates to: YCQQYRYCWLPWLPR*SCPKGSPSQKSQVG
Trigger: GCCCACCTGGGACTTCTGACTTGGGCTTCCCTTTGGACATGACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTGCTGGCAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 90 bp CCTCGGGCTGCATACTGCCAGCAATACCGTTACTGTTGGCTGCCATaGCTGCCCCGTTGGTCATGTCCAAAGGGAAGCCCAAGTCAGAAG +
Preference number: 5 (lower is better)
Translates to: PRAAYCQQYRYCWLP*LPRWSCPKGSPSQK
Trigger: CTTCTGACTTGGGCTTCCCTTTGGACATGACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTGCTGGCAGTATGCAGCCCGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 90 bp CACAGATCTCACAAGCCACTTGCTTCCTGGTCCGGCTCCTTTTTCTaGGGCCATCGGGGTCCTCGGAGATGGGTAACCCATTCTCACCCA +
Preference number: 5 (lower is better)
Translates to: HRSHKPLASWSGSFF*GHRGPRRWVTHSHP
Trigger: TGGGTGAGAATGGGTTACCCATCTCCGAGGACCCCGATGGCCCCAGAAAAAGGAGCCGGACCAGGAAGCAAGTGGCTTGTGAGATCTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 90 bp AGAAGGAGCCGTTGGCACTCTGTTTCTCTGGCGTCTTCAGGTCGCTaGCGTCGGAGAGGTCACCGTAGGAGTCGGAGCTCTCAATCAGAT +
Preference number: 5 (lower is better)
Translates to: RRSRWHSVSLASSGR*RRRGHRRSRSSQSD
Trigger: ATCTGATTGAGAGCTCCGACTCCTACGGTGACCTCTCCGACGCCAGCGACCTGAAGACGCCAGAGAAACAGAGTGCCAACGGCTCCTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GTTGGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTGTGCTGGGCCTCATGTaGCCGGAGCCGGTTGGCGTC +
Preference number: 5 (lower is better)
Translates to: VGVRTPITEHQKFWLQTTVLGLM*PEPVGV
Trigger: GACGCCAACCGGCTCCGGCAACATGAGGCCCAGCAC...AGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCGTGCTGGGCCTCATGTaGCCGGAGCCGGTTGGCGTC +
Preference number: 5 (lower is better)
Translates to: EHQKFWLQTTRETRTGTAVLGLM*PEPVGV
Trigger: GACGCCAACCGGCTCCGGCAACATGAGGCCCAGCAC...GGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp ATTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGCAGATGCTACAGAAGTaGCTGGGCCCCTCACTGTGC +
Preference number: 5 (lower is better)
Translates to: IHSIAQQSPAAVLWGHSMQMLQK*LGPSLC
Trigger: GCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTG...CATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CAA 90 bp GCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCGAGCAGAAGAGCGCATaGCTGGAGTGTGCTGGACTC +
Preference number: 5 (lower is better)
Translates to: AFRKEHGAYRGGAFRKVVEQKSA*LECAGL
Trigger: GAGTCCAGCACACTCCAGCAATGCGCTCTTCTGCTC...GACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS GCA 90 bp GGGCGAAAGAGCATGATATCAGCCCGGGCAGGGGGCACGAGGATCTaGACGTTGGACTGTTTGATTACTTCCTGGCAGATCTCGATGACC +
Preference number: 5 (lower is better)
Translates to: GRKSMISARAGGTRI*TLDCLITSWQISMT
Trigger: GGTCATCGAGATCTGCCAGGAAGTAATCAAACAGTCCAACGTGCAGATCCTCGTGCCCCCTGCCCGGGCTGATATCATGCTCTTTCGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 90 bp GGGTTCCTGGTGCCTGGAGACCTCGGTTACAGATGCTACAGAAGTTaGTGGGCCCCTCACTGTGCTTCTTCAGGTGGTCTGCCATGTATG +
Preference number: 5 (lower is better)
Translates to: GFLVPGDLGYRCYRS*WAPHCASSGGLPCM
Trigger: CATACATGGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGGTCTCCAGGCACCAGGAACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS CCA 90 bp ACTCGTAGGAGCACGTCGCAAAAGCGCCCGCCGTTTTTGCGTTGTTaGTTCAGGTTGTGCAGCATCTCCGTACTGTGTCTGCTCACCTGG +
Preference number: 5 (lower is better)
Translates to: TRRSTSQKRPPFLRC*FRLCSISVLCLLTW
Trigger: CCAGGTGAGCAGACACAGTACGGAGATGCTGCACAACCTGAACCAACAACGCAAAAACGGCGGGCGCTTTTGCGACGTGCTCCTACGAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 90 bp CAGATGCTACAGAAGTTGCTGGGCCCCTCACTGTGCTTCTTCAGGTaGTCTGCCATGTATGCGGCCCGCAAGTACTTTCCACACACCTGG +
Preference number: 5 (lower is better)
Translates to: QMLQKLLGPSLCFFR*SAMYAARKYFPHTW
Trigger: CCAGGTGTGTGGAAAGTACTTGCGGGCCGCATACATGGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
ENSMUST00000154319.2
CDS CCA 90 bp TTCCTGGTGCCTGGAGACCTCGGTTACAGATGCTACAGAAGTTGCTaGGCCCCTCACTGTGCTTCTTCAGGTGGTCTGCCATGTATGCGG +
Preference number: 5 (lower is better)
Translates to: FLVPGDLGYRCYRSC*APHCASSGGLPCMR
Trigger: CCGCATACATGGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGGTCTCCAGGCACCAGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS-3UTR CAA 90 bp GAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTCTCATCAGCAGGAACTaGGCGGCCGTCATGAGCTCG +
Preference number: 5 (lower is better)
Translates to: EDQGQPQRTLFVWSMGCCLISRN*AAVMSS
Trigger: CGAGCTCATGACGGCCGCCAAGTTCCTGCTGATGAG...ACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGCCATGGCTGCCCCGTaGGTCATGTCCAAAGGGAAG +
Preference number: 5 (lower is better)
Translates to: EKTRANLRGHSLYGPWDAAMAAP*VMSKGK
Trigger: CTTCCCTTTGGACATGACCAACGGGGCAGCCATGGC...AGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp AGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGGCCATGGCTGCCCCGTaGGTCATGTCCAAAGGGAAG +
Preference number: 5 (lower is better)
Translates to: RRPGPTSEDTLCMVHGMLAMAAP*VMSKGK
Trigger: CTTCCCTTTGGACATGACCAACGGGGCAGCCATGGC...CAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp AAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCTCAGAGGCCATGGAGTCCAGCAGGTaGGCCTTCCTGGGGCGTCCC +
Preference number: 5 (lower is better)
Translates to: KFWLQTTRETRTGTASEAMESSR*AFLGRP
Trigger: GGGACGCCCCAGGAAGGCCAACCTGCTGGACTCCAT...GGCCTCTGAGGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCATGGAGTCCAGCAGGTaGGCCTTCCTGGGGCGTCCC +
Preference number: 5 (lower is better)
Translates to: EHQKFWLQTTRETRTGTAMESSR*AFLGRP
Trigger: GGGACGCCCCAGGAAGGCCAACCTGCTGGACTCCAT...GGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GGACCAAAACTACCAAGCGAGGCCCAAGAGTGCCTTAGAGTTGGGGTGAGGACAGATCTCACAAGCCACTaGCTTCCTGGTCCGGCTCCT +
Preference number: 5 (lower is better)
Translates to: GPKLPSEAQECLRVGVRTDLTSH*LPGPAP
Trigger: AGGAGCCGGACCAGGAAGCAAGTGGCTTGTGAGATC...TGTCCTCACCCCAACTCTAAGGCACTCTTGGGCCTCGCTTGGTAGTTTTGGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GATTCCCCCTCCCGCCCAATTAAGAGGAGGGTGACTGGGAGCCCCAGTCAGTGTACGTCACGAAAGATCTaGCCACAGATCTCACAAGCC +
Preference number: 5 (lower is better)
Translates to: DSPSRPIKRRVTGSPSQCTSRKI*PQISQA
Trigger: GGCTTGTGAGATCTGTGGCAAGATCTTTCGTGACGT...ACACTGACTGGGGCTCCCAGTCACCCTCCTCTTAATTGGGCGGGAGGGGGAATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CAA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGCAGATGCTACAGAAGTaGCTGGGCCCCTCACTGTGC +
Preference number: 5 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRQMLQK*LGPSLC
Trigger: GCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTG...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS GCA 90 bp TTTTGCGTTGTTGGTTCAGGTTGTGCAGCATCTCCGTACTGTGTCTaGTCACCTGGTAGGTGTAGCAGCCCGACGGACCGCAAGAAGCGT +
Preference number: 5 (lower is better)
Translates to: FCVVGSGCAASPYCV*SPGRCSSPTDRKKR
Trigger: ACGCTTCTTGCGGTCCGTCGGGCTGCTACACCTACCAGGTGAGCAGACACAGTACGGAGATGCTGCACAACCTGAACCAACAACGCAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 90 bp ATCCCTGTCTCAGGTATCCTGGTGGGGCTGAGCAGAAGAGCGCATTaGTGGAGTGTGCTGGACTCAGGTTTTCAAGGGCTGGAAAGGACT +
Preference number: 5 (lower is better)
Translates to: IPVSGILVGLSRRAH*WSVLDSGFQGLERT
Trigger: AGTCCTTTCCAGCCCTTGAAAACCTGAGTCCAGCACACTCCAGCAATGCGCTCTTCTGCTCAGCCCCACCAGGATACCTGAGACAGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS CCA 90 bp AGGAGGCAGAGGAGAAACCTCGGTTACAGATGCTACAGAAGTTGCTaGGCCCCTCACTGTGCTTCTTCAGGTGGTCTGCCATGTATGCGG +
Preference number: 5 (lower is better)
Translates to: RRQRRNLGYRCYRSC*APHCASSGGLPCMR
Trigger: CCGCATACATGGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGGTTTCTCCTCTGCCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GGAGAGCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGCGTTGTTGGTTCAGGTaGTGCAGCATCTCCGTACTG +
Preference number: 5 (lower is better)
Translates to: GEHSERNMAPTGEGPSERRCWFR*CSISVL
Trigger: CAGTACGGAGATGCTGCACAACCTGAACCAACAACG...CCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGCTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CAA 90 bp CAGAACTGGTACTGCCTCAGAGGCCGATGTAGTGCTTTCTGCCCTTGCCCCATACCCGCCGTTTTTGCGTaGTTGGTTCAGGTTGTGCAG +
Preference number: 5 (lower is better)
Translates to: QNWYCLRGRCSAFCPCPIPAVFA*LVQVVQ
Trigger: CTGCACAACCTGAACCAACAACGCAAAAACGGCGGG...TATGGGGCAAGGGCAGAAAGCACTACATCGGCCTCTGAGGCAGTACCAGTTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GTTGGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTCGTCCCCGGCCTCGCTaGCTAGTTAGTGGAGGTGCA +
Preference number: 5 (lower is better)
Translates to: VGVRTPITEHQKFWLQTTRPRPR*LVSGGA
Trigger: TGCACCTCCACTAACTAGCAAGCGAGGCCGGGGACG...AGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGACGTCCCCGGCCTCGCTaGCTAGTTAGTGGAGGTGCA +
Preference number: 5 (lower is better)
Translates to: GVRTPITEHQKFWLQTTRRPRPR*LVSGGA
Trigger: TGCACCTCCACTAACTAGCAAGCGAGGCCGGGGACG...TCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp AGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGGATCTCACAAGCCACTaGCTTCCTGGTCCGGCTCCT +
Preference number: 5 (lower is better)
Translates to: RRPGPTSEDTLCMVHGMLDLTSH*LPGPAP
Trigger: AGGAGCCGGACCAGGAAGCAAGTGGCTTGTGAGATC...CAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp AGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGCAGATGCTACAGAAGTaGCTGGGCCCCTCACTGTGC +
Preference number: 5 (lower is better)
Translates to: RRPGPTSEDTLCMVHGMLQMLQK*LGPSLC
Trigger: GCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTG...CAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS GCA 90 bp CCTTCTCGGTTACAGATGCTACAGAAGTTGCTGGGCCCCTCACTGTaGTTCTTCAGGTGGTCTGCCATGTATGCGGCCCGCAAGTACTTT +
Preference number: 5 (lower is better)
Translates to: PSRLQMLQKLLGPSL*FFRWSAMYAARKYF
Trigger: AAAGTACTTGCGGGCCGCATACATGGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000154319.2
CDS GCA 90 bp AGACCTCGGTTACAGATGCTACAGAAGTTGCTGGGCCCCTCACTGTaGTTCTTCAGGTGGTCTGCCATGTATGCGGCCCGCAAGTACTTT +
Preference number: 5 (lower is better)
Translates to: RPRLQMLQKLLGPSL*FFRWSAMYAARKYF
Trigger: AAAGTACTTGCGGGCCGCATACATGGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS CCA 90 bp GTGAGCATTTCTGGCCTTCTCGGTTACAGATGCTACAGAAGTTGCTaGGCCCCTCACTGTGCTTCTTCAGGTGGTCTGCCATGTATGCGG +
Preference number: 5 (lower is better)
Translates to: VSISGLLGYRCYRSC*APHCASSGGLPCMR
Trigger: CCGCATACATGGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGAAGGCCAGAAATGCTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000154319.2
CDS CCA 90 bp CCTGTCTCAGGTATCCTGGTGGGGCTGAGCAGAAGAGCGCATTGCTaGAGTGTGCTGGACTCAGGTTTTCAAGGGCTGGAAAGGACTTTT +
Preference number: 5 (lower is better)
Translates to: PVSGILVGLSRRAHC*SVLDSGFQGLERTF
Trigger: AAAAGTCCTTTCCAGCCCTTGAAAACCTGAGTCCAGCACACTCCAGCAATGCGCTCTTCTGCTCAGCCCCACCAGGATACCTGAGACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CAA 90 bp GAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTCCCGCCGTTTTTGCGTaGTTGGTTCAGGTTGTGCAG +
Preference number: 5 (lower is better)
Translates to: EDQGQPQRTLFVWSMGCCPAVFA*LVQVVQ
Trigger: CTGCACAACCTGAACCAACAACGCAAAAACGGCGGG...ACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp AGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGAAGCGCCCGCCGTTTTaGCGTTGTTGGTTCAGGTTG +
Preference number: 5 (lower is better)
Translates to: RRPGPTSEDTLCMVHGMLKRPPF*RCWFRL
Trigger: CAACCTGAACCAACAACGCAAAAACGGCGGGCGCTT...CAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp TCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGTCACGAGGATCTGCACGTaGGACTGTTTGATTACTTCC +
Preference number: 5 (lower is better)
Translates to: SQHCSAVPSGCSVGTQHVTRICT*DCLITS
Trigger: GGAAGTAATCAAACAGTCCAACGTGCAGATCCTCGT...GACATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp CTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCTGCCATGGCTGCCCCGTaGGTCATGTCCAAAGGGAAG +
Preference number: 5 (lower is better)
Translates to: LRGHSLYGPWDAVGFWLPAMAAP*VMSKGK
Trigger: CTTCCCTTTGGACATGACCAACGGGGCAGCCATGGC...AGGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GGAGAGCATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGATTCGGTCTTTTCTCTaGAACCGCAGACCACACACC +
Preference number: 5 (lower is better)
Translates to: GEHSERNMAPTGEGPSERIRSFL*NRRPHT
Trigger: GGTGTGTGGTCTGCGGTTCAAGAGAAAAGACCGAAT...CCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATGCTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CAA 90 bp ATTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGATTCGGTCTTTTCTCTaGAACCGCAGACCACACACC +
Preference number: 5 (lower is better)
Translates to: IHSIAQQSPAAVLWGHSMIRSFL*NRRPHT
Trigger: GGTGTGTGGTCTGCGGTTCAAGAGAAAAGACCGAAT...CATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp ATTCACAGCATTGCTCAGCAGTCCCCAGCGGCTGTTCTGTGGGGACACAGCATGCCGTCAGACTCCATTTaGTTTTTAGGGACTGCCACG +
Preference number: 5 (lower is better)
Translates to: IHSIAQQSPAAVLWGHSMPSDSI*FLGTAT
Trigger: CGTGGCAGTCCCTAAAAACAAAATGGAGTCTGACGG...CATGCTGTGTCCCCACAGAACAGCCGCTGGGGACTGCTGAGCAATGCTGTGAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GGACTTAGAACGGAAGAAGCTCCCACATTCAGGGCATGGGTACTTCTTCTCCCCGTCGCAAAGGAGGCATaGCAGGTCTCCACAAAGCAG +
Preference number: 5 (lower is better)
Translates to: GLRTEEAPTFRAWVLLLPVAKEA*QVSTKQ
Trigger: CTGCTTTGTGGAGACCTGCAATGCCTCCTTTGCGAC...GGGGAGAAGAAGTACCCATGCCCTGAATGTGGGAGCTTCTTCCGTTCTAAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134089.8
CDS GCA 90 bp AAACCTCGGTTACAGATGCTACAGAAGTTGCTGGGCCCCTCACTGTaGTTCTTCAGGTGGTCTGCCATGTATGCGGCCCGCAAGTACTTT +
Preference number: 5 (lower is better)
Translates to: KPRLQMLQKLLGPSL*FFRWSAMYAARKYF
Trigger: AAAGTACTTGCGGGCCGCATACATGGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110043.8
CDS GCA 90 bp AGTAGGAGGCAGAGGAGAAACCTCGGTTACAGATGCTACAGAAGTTaGTGGGCCCCTCACTGTGCTTCTTCAGGTGGTCTGCCATGTATG +
Preference number: 5 (lower is better)
Translates to: SRRQRRNLGYRCYRS*WAPHCASSGGLPCM
Trigger: CATACATGGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGGTTTCTCCTCTGCCTCCTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp CATTCAGAAAGGAACATGGCGCCTACAGGGGAGGGGCCTTCAGAAAGGTGGTCCTGCACGTTGGACTGTTaGATTACTTCCTGGCAGATC +
Preference number: 5 (lower is better)
Translates to: HSERNMAPTGEGPSERWSCTLDC*ITSWQI
Trigger: GATCTGCCAGGAAGTAATCAAACAGTCCAACGTGCA...GGACCACCTTTCTGAAGGCCCCTCCCCTGTAGGCGCCATGTTCCTTTCTGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CAA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGACGTCACGAAAGATCTaGCCACAGATCTCACAAGCC +
Preference number: 5 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRTSRKI*PQISQA
Trigger: GGCTTGTGAGATCTGTGGCAAGATCTTTCGTGACGT...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGATTCGGTCTTTTCTCTaGAACCGCAGACCACACACC +
Preference number: 5 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRIRSFL*NRRPHT
Trigger: GGTGTGTGGTCTGCGGTTCAAGAGAAAAGACCGAAT...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GTAAGACAATCAAGGTACTCGATGTCTCTACCTGAGGTTCTCCCACCTTCCTGGCAGATGCTACAGAAGTaGCTGGGCCCCTCACTGTGC +
Preference number: 5 (lower is better)
Translates to: VRQSRYSMSLPEVLPPSWQMLQK*LGPSLC
Trigger: GCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTG...CCAGGAAGGTGGGAGAACCTCAGGTAGAGACATCGAGTACCTTGATTGTCTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS-3UTR CAA 90 bp GGTCAACCTGGGCTGCTCAAGTGTAAGACAATCAAGGTACTCGATGTCTCTACCCAGGAGAAGGAGCCGTaGGCACTCTGTTTCTCTGGC +
Preference number: 5 (lower is better)
Translates to: GQPGLLKCKTIKVLDVSTQEKEP*ALCFSG
Trigger: GCCAGAGAAACAGAGTGCCAACGGCTCCTTCTCCTG...GGTAGAGACATCGAGTACCTTGATTGTCTTACACTTGAGCAGCCCAGGTTGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS TCA 90 bp CCCACACCTGACACTTGTGAGGTCGCTCAGAAGTGTGCACCTGCTTaGTATGTCCATTCAAGTGATCTGGCCTGGAGAAACCTTTCCCAC +
Preference number: 5 (lower is better)
Translates to: PTPDTCEVAQKCAPA*YVHSSDLAWRNLSH
Trigger: GTGGGAAAGGTTTCTCCAGGCCAGATCACTTGAATGGACATATCAAGCAGGTGCACACTTCTGAGCGACCTCACAAGTGTCAGGTGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CAA 90 bp AGCTTCCAGCAGCTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATGCCGTTTTTGCGTTGTaGGTTCAGGTTGTGCAGCAT +
Preference number: 5 (lower is better)
Translates to: SFQQLEKTRANLRGHSLYAVFAL*VQVVQH
Trigger: ATGCTGCACAACCTGAACCAACAACGCAAAAACGGC...ATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAGCTGCTGGAAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCAAGCGCCCGCCGTTTTaGCGTTGTTGGTTCAGGTTG +
Preference number: 5 (lower is better)
Translates to: EHQKFWLQTTRETRTGTAKRPPF*RCWFRL
Trigger: CAACCTGAACCAACAACGCAAAAACGGCGGGCGCTT...GGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAACTCATCAGCAGGAACTaGGCGGCCGTCATGAGCTCG +
Preference number: 5 (lower is better)
Translates to: VRTPITEHQKFWLQTTRELISRN*AAVMSS
Trigger: CGAGCTCATGACGGCCGCCAAGTTCCTGCTGATGAG...TTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GACCAGGGCCAACCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTGCACGTTGGACTGTTaGATTACTTCCTGGCAGATC +
Preference number: 5 (lower is better)
Translates to: DQGQPQRTLFVWSMGCCRCTLDC*ITSWQI
Trigger: GATCTGCCAGGAAGTAATCAAACAGTCCAACGTGCA...CCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp AGCTTCCAGCAGCTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATACGTCACGAAAGATCTaGCCACAGATCTCACAAGCC +
Preference number: 5 (lower is better)
Translates to: SFQQLEKTRANLRGHSLYTSRKI*PQISQA
Trigger: GGCTTGTGAGATCTGTGGCAAGATCTTTCGTGACGT...ATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAGCTGCTGGAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS TCA 90 bp TGCAGGTCTGACACTTGTGAGGTCGCTCAGAAGTGTGCACCTGCTTaGTATGTCCATTCAAGTGATCTGGCCTGGAGAAACCTTTCCCAC +
Preference number: 5 (lower is better)
Translates to: CRSDTCEVAQKCAPA*YVHSSDLAWRNLSH
Trigger: GTGGGAAAGGTTTCTCCAGGCCAGATCACTTGAATGGACATATCAAGCAGGTGCACACTTCTGAGCGACCTCACAAGTGTCAGACCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GTTGGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTCGTTGTTGGTTCAGGTaGTGCAGCATCTCCGTACTG +
Preference number: 5 (lower is better)
Translates to: VGVRTPITEHQKFWLQTTRCWFR*CSISVL
Trigger: CAGTACGGAGATGCTGCACAACCTGAACCAACAACG...AGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp AGCTTCCAGCAGCTCGAGAAGACCAGGGCCAACCTCAGAGGACACTCTTTGTATTGCACGTTGGACTGTTaGATTACTTCCTGGCAGATC +
Preference number: 5 (lower is better)
Translates to: SFQQLEKTRANLRGHSLYCTLDC*ITSWQI
Trigger: GATCTGCCAGGAAGTAATCAAACAGTCCAACGTGCA...ATACAAAGAGTGTCCTCTGAGGTTGGCCCTGGTCTTCTCGAGCTGCTGGAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp TGCTGGGCAGGAACCATCTTGCTAGCTATCCTCTGCCAAAAGCAGGAGTCTCCAACGAGGATCTGCACGTaGGACTGTTTGATTACTTCC +
Preference number: 5 (lower is better)
Translates to: CWAGTILLAILCQKQESPTRICT*DCLITS
Trigger: GGAAGTAATCAAACAGTCCAACGTGCAGATCCTCGT...TGGAGACTCCTGCTTTTGGCAGAGGATAGCTAGCAAGATGGTTCCTGCCCAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094471.10
CDS-3UTR CAA 90 bp CCTCAGAGGACACTCTTTGTATGGTCCATGGGATGCTGTAGGTTTCTGGCTTCCACGTCACGAAAGATCTaGCCACAGATCTCACAAGCC +
Preference number: 5 (lower is better)
Translates to: PQRTLFVWSMGCCRFLASTSRKI*PQISQA
Trigger: GGCTTGTGAGATCTGTGGCAAGATCTTTCGTGACGT...GGAAGCCAGAAACCTACAGCATCCCATGGACCATACAAAGAGTGTCCTCTGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAACAGGAGAAGGAGCCGTaGGCACTCTGTTTCTCTGGC +
Preference number: 5 (lower is better)
Translates to: VRTPITEHQKFWLQTTREQEKEP*ALCFSG
Trigger: GCCAGAGAAACAGAGTGCCAACGGCTCCTTCTCCTG...TTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GGGGTGAGGACACCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGCCGTTTTTGCGTTGTaGGTTCAGGTTGTGCAGCAT +
Preference number: 5 (lower is better)
Translates to: GVRTPITEHQKFWLQTTRAVFAL*VQVVQH
Trigger: ATGCTGCACAACCTGAACCAACAACGCAAAAACGGC...TCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGGTGTCCTCACCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp TCAGATGAGAGTCTGTTTCTAAGACCACAGCAGGTGGGGTTAATGGAGGGAGGGACGAGGATCTGCACGTaGGACTGTTTGATTACTTCC +
Preference number: 5 (lower is better)
Translates to: SDESLFLRPQQVGLMEGGTRICT*DCLITS
Trigger: GGAAGTAATCAAACAGTCCAACGTGCAGATCCTCGT...CCCTCCCTCCATTAACCCCACCTGCTGTGGTCTTAGAAACAGACTCTCATCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp CCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTCCCGCCGTTTTTGCGTaGTTGGTTCAGGTTGTGCAG +
Preference number: 5 (lower is better)
Translates to: PITEHQKFWLQTTRETRTPAVFA*LVQVVQ
Trigger: CTGCACAACCTGAACCAACAACGCAAAAACGGCGGG...AGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp CCAATAACTGAGCACCAGAAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTAAGCGCCCGCCGTTTTaGCGTTGTTGGTTCAGGTTG +
Preference number: 5 (lower is better)
Translates to: PITEHQKFWLQTTRETRTKRPPF*RCWFRL
Trigger: CAACCTGAACCAACAACGCAAAAACGGCGGGCGCTT...AGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTTCTGGTGCTCAGTTATTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp AAATTCTGGCTTCAGACCACTAGAGAAACCAGAACTGGTACTGCCTCAGAGGCCTGCACGTTGGACTGTTaGATTACTTCCTGGCAGATC +
Preference number: 5 (lower is better)
Translates to: KFWLQTTRETRTGTASEACTLDC*ITSWQI
Trigger: GATCTGCCAGGAAGTAATCAAACAGTCCAACGTGCA...GGCCTCTGAGGCAGTACCAGTTCTGGTTTCTCTAGTGGTCTGAAGCCAGAATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp GGTCAACCTGGGCTGCTCAAGTGTAAGACAATCAAGGTACTCGATGTCTCTACCACGAGGATCTGCACGTaGGACTGTTTGATTACTTCC +
Preference number: 5 (lower is better)
Translates to: GQPGLLKCKTIKVLDVSTTRICT*DCLITS
Trigger: GGAAGTAATCAAACAGTCCAACGTGCAGATCCTCGT...GGTAGAGACATCGAGTACCTTGATTGTCTTACACTTGAGCAGCCCAGGTTGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp AGGTTTCTGGCTTCCTTAAAAATAGTTGGCCATAAGAGGGTAGAGACCCTACTTCCGTCAGACTCCATTTaGTTTTTAGGGACTGCCACG +
Preference number: 5 (lower is better)
Translates to: RFLASLKIVGHKRVETLLPSDSI*FLGTAT
Trigger: CGTGGCAGTCCCTAAAAACAAAATGGAGTCTGACGG...AAGTAGGGTCTCTACCCTCTTATGGCCAACTATTTTTAAGGAAGCCAGAAACCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000110043.8
CDS-3UTR CAA 90 bp TTGGGTCTCTCAGTATTTCTACAGAGAGTATCAGATGAGAGTCTGTTTCTAAGACGTTGTTGGTTCAGGTaGTGCAGCATCTCCGTACTG +
Preference number: 5 (lower is better)
Translates to: LGLSVFLQRVSDESLFLRRCWFR*CSISVL
Trigger: CAGTACGGAGATGCTGCACAACCTGAACCAACAACG...TCTTAGAAACAGACTCTCATCTGATACTCTCTGTAGAAATACTGAGAGACCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS CCA 72 bp TGCCTGCTTCCCTCAAGCCCCCTGGAGACCCAAACATaGAGTCCAGCAGGTTGGCCTTCCTGGGGCGTCCCC +
Preference number: 6 (lower is better)
Translates to: CLLPSSPLETQT*SPAGWPSWGVP
Trigger: GGGGACGCCCCAGGAAGGCCAACCTGCTGGACTCCATGTTTGGGTCTCCAGGGGGCTTGAGGGAAGCAGGCA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS TCA 72 bp GCTGGGCCTCATGTTGCCGGAGCCGGTTGGCGTCAGTaGACACCTTCCCGCACAGGCCACATGGAAGGATGC +
Preference number: 6 (lower is better)
Translates to: AGPHVAGAGWRQ*TPSRTGHMEGC
Trigger: GCATCCTTCCATGTGGCCTGTGCGGGAAGGTGTTCACTGACGCCAACCGGCTCCGGCAACATGAGGCCCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 72 bp AACTGGAGGCTTGTGACGCCGTGCTGGGCCTCATGTTaGCGGAGCCGGTTGGCGTCAGTGAACACCTTCCCG +
Preference number: 6 (lower is better)
Translates to: NWRLVTPCWASC*RSRLASVNTFP
Trigger: CGGGAAGGTGTTCACTGACGCCAACCGGCTCCGGCAACATGAGGCCCAGCACGGCGTCACAAGCCTCCAGTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CAA 72 bp CAACTGGAGGCTTGTGACGCCGTGCTGGGCCTCATGTaGCCGGAGCCGGTTGGCGTCAGTGAACACCTTCCC +
Preference number: 6 (lower is better)
Translates to: QLEACDAVLGLM*PEPVGVSEHLP
Trigger: GGGAAGGTGTTCACTGACGCCAACCGGCTCCGGCAACATGAGGCCCAGCACGGCGTCACAAGCCTCCAGTTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CAA 90 bp TGGAGGCTTGTGACGCCGTGCTGGGCCTCATGTTGCCGGAGCCGGTaGGCGTCAGTGAACACCTTCCCGCACAGGCCACATGGAAGGATG +
Preference number: 6 (lower is better)
Translates to: WRLVTPCWASCCRSR*ASVNTFPHRPHGRM
Trigger: CATCCTTCCATGTGGCCTGTGCGGGAAGGTGTTCACTGACGCCAACCGGCTCCGGCAACATGAGGCCCAGCACGGCGTCACAAGCCTCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CAA 90 bp GATATAGCCCAACTGGAGGCTTGTGACGCCGTGCTGGGCCTCATGTaGCCGGAGCCGGTTGGCGTCAGTGAACACCTTCCCGCACAGGCC +
Preference number: 6 (lower is better)
Translates to: DIAQLEACDAVLGLM*PEPVGVSEHLPAQA
Trigger: GGCCTGTGCGGGAAGGTGTTCACTGACGCCAACCGGCTCCGGCAACATGAGGCCCAGCACGGCGTCACAAGCCTCCAGTTGGGCTATATC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 72 bp CTGTGGCCCTGGCAGCCTCCTCCTCGGGCTGCATACTaGCAGCAATACCGTTACTGTTGGCTGCCATGGCTG +
Preference number: 6 (lower is better)
Translates to: LWPWQPPPRAAY*QQYRYCWLPWL
Trigger: CAGCCATGGCAGCCAACAGTAACGGTATTGCTGGCAGTATGCAGCCCGAGGAGGAGGCTGCCAGGGCCACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 72 bp AATCTGTCCACCCCGGGTAACACAGGCAGAGAAGCTTaGCCCGCAATAGCAGCACCTGTGGCCCTGGCAGCC +
Preference number: 6 (lower is better)
Translates to: NLSTPGNTGREA*PAIAAPVALAA
Trigger: GGCTGCCAGGGCCACAGGTGCTGCTATTGCGGGCCAAGCTTCTCTGCCTGTGTTACCCGGGGTGGACAGATT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CAA 90 bp GCAGCCTCCTCCTCGGGCTGCATACTGCCAGCAATACCGTTACTGTaGGCTGCCATGGCTGCCCCGTTGGTCATGTCCAAAGGGAAGCCC +
Preference number: 6 (lower is better)
Translates to: AASSSGCILPAIPLL*AAMAAPLVMSKGKP
Trigger: GGGCTTCCCTTTGGACATGACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTGCTGGCAGTATGCAGCCCGAGGAGGAGGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CAA 90 bp ATGGAGTCCAGCAGGTTGGCCTTCCTGGGGCGTCCCCGGCCTCGCTaGCTAGTTAGTGGAGGTGCACTGGATGCCACATTAGGGAACGGA +
Preference number: 6 (lower is better)
Translates to: MESSRLAFLGRPRPR*LVSGGALDATLGNG
Trigger: TCCGTTCCCTAATGTGGCATCCAGTGCACCTCCACTAACTAGCAAGCGAGGCCGGGGACGCCCCAGGAAGGCCAACCTGCTGGACTCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS TCA 72 bp CACCATCTGCAGCTCCGCCGTCGCCTAACTGGGCGCTaGACACAGACTCAAAGTACTCGCTGCAGGCAGCCA +
Preference number: 6 (lower is better)
Translates to: HHLQLRRRLTGR*TQTQSTRCRQP
Trigger: TGGCTGCCTGCAGCGAGTACTTTGAGTCTGTGTTCAGCGCCCAGTTAGGCGACGGCGGAGCTGCAGATGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 72 bp GCAGGACCACCATCTGCAGCTCCGCCGTCGCCTAACTaGGCGCTGAACACAGACTCAAAGTACTCGCTGCAG +
Preference number: 6 (lower is better)
Translates to: AGPPSAAPPSPN*ALNTDSKYSLQ
Trigger: CTGCAGCGAGTACTTTGAGTCTGTGTTCAGCGCCCAGTTAGGCGACGGCGGAGCTGCAGATGGTGGTCCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 72 bp GTTGGCGTCAGTGAACACCTTCCCGCACAGGCCACATaGAAGGATGCCTGCTTCCCTCAAGCCCCCTGGAGA +
Preference number: 6 (lower is better)
Translates to: VGVSEHLPAQAT*KDACFPQAPWR
Trigger: TCTCCAGGGGGCTTGAGGGAAGCAGGCATCCTTCCATGTGGCCTGTGCGGGAAGGTGTTCACTGACGCCAAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 72 bp TCCTGGCGCAGTGGAACGCTGCTCCCCCATTCAGGATaGGTTCCTGGTGCCTGGAGACCTCGGTTACAGATG +
Preference number: 6 (lower is better)
Translates to: SWRSGTLLPHSG*VPGAWRPRLQM
Trigger: CATCTGTAACCGAGGTCTCCAGGCACCAGGAACCCATCCTGAATGGGGGAGCAGCGTTCCACTGCGCCAGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS CAA 72 bp AGCAGGTTGGCCTTCCTGGGGCGTCCCCGGCCTCGCTaGCTAGTTAGTGGAGGTGCACTGGATGCCACATTA +
Preference number: 6 (lower is better)
Translates to: SRLAFLGRPRPR*LVSGGALDATL
Trigger: TAATGTGGCATCCAGTGCACCTCCACTAACTAGCAAGCGAGGCCGGGGACGCCCCAGGAAGGCCAACCTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 72 bp GTTGGTTCAGGTTGTGCAGCATCTCCGTACTGTGTCTaGTCACCTGGTAGGTGTAGCAGCCCGACGGACCGC +
Preference number: 6 (lower is better)
Translates to: VGSGCAASPYCV*SPGRCSSPTDR
Trigger: GCGGTCCGTCGGGCTGCTACACCTACCAGGTGAGCAGACACAGTACGGAGATGCTGCACAACCTGAACCAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 72 bp TCCAGGATGTCTCCGAACACTTTGGAACTGATGGTGTaGATCTCCAGTTCGCGGCTGCCTCCAGCTCCGCCG +
Preference number: 6 (lower is better)
Translates to: SRMSPNTLELMV*ISSSRLPPAPP
Trigger: CGGCGGAGCTGGAGGCAGCCGCGAACTGGAGATGCACACCATCAGTTCCAAAGTGTTCGGAGACATCCTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 72 bp GAACACCTTCCCGCACAGGCCACATGGAAGGATGCCTaGTTCCCTCAAGCCCCCTGGAGACCCAAACATGGA +
Preference number: 6 (lower is better)
Translates to: EHLPAQATWKDA*FPQAPWRPKHG
Trigger: TCCATGTTTGGGTCTCCAGGGGGCTTGAGGGAAGCAGGCATCCTTCCATGTGGCCTGTGCGGGAAGGTGTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 72 bp GGGAGCGCAGGCGGTCTCGAGTCGCAAAGGAGGCATTaGAGGTCTGACACTTGTGAGGTCGCTCAGAAGTGT +
Preference number: 6 (lower is better)
Translates to: GSAGGLESQRRH*RSDTCEVAQKC
Trigger: ACACTTCTGAGCGACCTCACAAGTGTCAGACCTGCAATGCCTCCTTTGCGACTCGAGACCGCCTGCGCTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
CDS GCA 72 bp CCCCTCACTGTGCTTCTTCAGGTGGTCTGCCATGTATaGGGCCCGCAAGTACTTTCCACACACCTGGCAGGG +
Preference number: 6 (lower is better)
Translates to: PLTVLLQVVCHV*GPQVLSTHLAG
Trigger: CCCTGCCAGGTGTGTGGAAAGTACTTGCGGGCCGCATACATGGCAGACCACCTGAAGAAGCACAGTGAGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
ENSMUST00000154319.2
CDS CCA 72 bp CACAAGCCACTTGCTTCCTGGTCCGGCTCCTTTTTCTaGGGCCATCGGGGTCCTCGGAGATGGGTAACCCAT +
Preference number: 6 (lower is better)
Translates to: HKPLASWSGSFF*GHRGPRRWVTH
Trigger: ATGGGTTACCCATCTCCGAGGACCCCGATGGCCCCAGAAAAAGGAGCCGGACCAGGAAGCAAGTGGCTTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CAA 72 bp TGGCAGATCTCGATGACCGACCTCATCAGCAGGAACTaGGCGGCCGTCATGAGCTCGGGGAAGCTCTCTAGG +
Preference number: 6 (lower is better)
Translates to: WQISMTDLISRN*AAVMSSGKLSR
Trigger: CCTAGAGAGCTTCCCCGAGCTCATGACGGCCGCCAAGTTCCTGCTGATGAGGTCGGTCATCGAGATCTGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CAA 90 bp ATTACTTCCTGGCAGATCTCGATGACCGACCTCATCAGCAGGAACTaGGCGGCCGTCATGAGCTCGGGGAAGCTCTCTAGGCGCACAACG +
Preference number: 6 (lower is better)
Translates to: ITSWQISMTDLISRN*AAVMSSGKLSRRTT
Trigger: CGTTGTGCGCCTAGAGAGCTTCCCCGAGCTCATGACGGCCGCCAAGTTCCTGCTGATGAGGTCGGTCATCGAGATCTGCCAGGAAGTAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 72 bp GTTGCTGGGCCCCTCACTGTGCTTCTTCAGGTGGTCTaGCATGTATGCGGCCCGCAAGTACTTTCCACACAC +
Preference number: 6 (lower is better)
Translates to: VAGPLTVLLQVV*HVCGPQVLSTH
Trigger: GTGTGTGGAAAGTACTTGCGGGCCGCATACATGGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
ENSMUST00000154319.2
CDS GCA 72 bp TTCTTTGTTGCCATAGGTCCTGGCGCAGTGGAACGCTaGTCCCCCATTCAGGATGGGTTCCTGGTGCCTGGA +
Preference number: 6 (lower is better)
Translates to: FFVAIGPGAVER*SPIQDGFLVPG
Trigger: TCCAGGCACCAGGAACCCATCCTGAATGGGGGAGCAGCGTTCCACTGCGCCAGGACCTATGGCAACAAAGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS CCA 72 bp CCTCGGGCTGCATACTGCCAGCAATACCGTTACTGTTaGCTGCCATGGCTGCCCCGTTGGTCATGTCCAAAG +
Preference number: 6 (lower is better)
Translates to: PRAAYCQQYRYC*LPWLPRWSCPK
Trigger: CTTTGGACATGACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTGCTGGCAGTATGCAGCCCGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CAA 72 bp CGGGCAGGGGGCACGAGGATCTGCACGTTGGACTGTTaGATTACTTCCTGGCAGATCTCGATGACCGACCTC +
Preference number: 6 (lower is better)
Translates to: RAGGTRICTLDC*ITSWQISMTDL
Trigger: GAGGTCGGTCATCGAGATCTGCCAGGAAGTAATCAAACAGTCCAACGTGCAGATCCTCGTGCCCCCTGCCCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CAA 90 bp TCGTCGCCTACTCGTAGGAGCACGTCGCAAAAGCGCCCGCCGTTTTaGCGTTGTTGGTTCAGGTTGTGCAGCATCTCCGTACTGTGTCTG +
Preference number: 6 (lower is better)
Translates to: SSPTRRSTSQKRPPF*RCWFRLCSISVLCL
Trigger: CAGACACAGTACGGAGATGCTGCACAACCTGAACCAACAACGCAAAAACGGCGGGCGCTTTTGCGACGTGCTCCTACGAGTAGGCGACGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CAA 90 bp ATATCAGCCCGGGCAGGGGGCACGAGGATCTGCACGTTGGACTGTTaGATTACTTCCTGGCAGATCTCGATGACCGACCTCATCAGCAGG +
Preference number: 6 (lower is better)
Translates to: ISARAGGTRICTLDC*ITSWQISMTDLISR
Trigger: CCTGCTGATGAGGTCGGTCATCGAGATCTGCCAGGAAGTAATCAAACAGTCCAACGTGCAGATCCTCGTGCCCCCTGCCCGGGCTGATAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CAA 90 bp ATACTGCCAGCAATACCGTTACTGTTGGCTGCCATGGCTGCCCCGTaGGTCATGTCCAAAGGGAAGCCCAAGTCAGAAGTCCCAGGTGGG +
Preference number: 6 (lower is better)
Translates to: ILPAIPLLLAAMAAP*VMSKGKPKSEVPGG
Trigger: CCCACCTGGGACTTCTGACTTGGGCTTCCCTTTGGACATGACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTGCTGGCAGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 72 bp CTCGTAGGAGCACGTCGCAAAAGCGCCCGCCGTTTTTaGGTTGTTGGTTCAGGTTGTGCAGCATCTCCGTAC +
Preference number: 6 (lower is better)
Translates to: LVGARRKSARRF*VVGSGCAASPY
Trigger: GTACGGAGATGCTGCACAACCTGAACCAACAACGCAAAAACGGCGGGCGCTTTTGCGACGTGCTCCTACGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 72 bp ACTGCCAGCAATACCGTTACTGTTGGCTGCCATGGCTaGCCCGTTGGTCATGTCCAAAGGGAAGCCCAAGTC +
Preference number: 6 (lower is better)
Translates to: TASNTVTVGCHG*PVGHVQREAQV
Trigger: GACTTGGGCTTCCCTTTGGACATGACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTGCTGGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 72 bp GGGCTGCATACTGCCAGCAATACCGTTACTGTTGGCTaGCATGGCTGCCCCGTTGGTCATGTCCAAAGGGAA +
Preference number: 6 (lower is better)
Translates to: GLHTASNTVTVG*HGCPVGHVQRE
Trigger: TTCCCTTTGGACATGACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTGCTGGCAGTATGCAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 72 bp GTGCCTGGAGACCTCGGTTACAGATGCTACAGAAGTTaGTGGGCCCCTCACTGTGCTTCTTCAGGTGGTCTG +
Preference number: 6 (lower is better)
Translates to: VPGDLGYRCYRS*WAPHCASSGGL
Trigger: CAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGGTCTCCAGGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS CCA 72 bp GCATACTGCCAGCAATACCGTTACTGTTGGCTGCCATaGCTGCCCCGTTGGTCATGTCCAAAGGGAAGCCCA +
Preference number: 6 (lower is better)
Translates to: AYCQQYRYCWLP*LPRWSCPKGSP
Trigger: TGGGCTTCCCTTTGGACATGACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTGCTGGCAGTATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 72 bp CTGGATGCCACATTAGGGAACGGAGAAGTCAGTAGTTaGGGGGATAGGGGTCCAGCCACCATGGGCAATCTG +
Preference number: 6 (lower is better)
Translates to: LDATLGNGEVSS*GDRGPATMGNL
Trigger: CAGATTGCCCATGGTGGCTGGACCCCTATCCCCCCAACTACTGACTTCTCCGTTCCCTAATGTGGCATCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 72 bp CAGAAGTTGCTGGGCCCCTCACTGTGCTTCTTCAGGTaGTCTGCCATGTATGCGGCCCGCAAGTACTTTCCA +
Preference number: 6 (lower is better)
Translates to: QKLLGPSLCFFR*SAMYAARKYFP
Trigger: TGGAAAGTACTTGCGGGCCGCATACATGGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
ENSMUST00000154319.2
CDS CCA 72 bp CCTGGAGACCTCGGTTACAGATGCTACAGAAGTTGCTaGGCCCCTCACTGTGCTTCTTCAGGTGGTCTGCCA +
Preference number: 6 (lower is better)
Translates to: PGDLGYRCYRSC*APHCASSGGLP
Trigger: TGGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGGTCTCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS CCA 72 bp CAGTGGAACGCTGCTCCCCCATTCAGGATGGGTTCCTaGTGCCTGGAGACCTCGGTTACAGATGCTACAGAA +
Preference number: 6 (lower is better)
Translates to: QWNAAPPFRMGS*CLETSVTDATE
Trigger: TTCTGTAGCATCTGTAACCGAGGTCTCCAGGCACCAGGAACCCATCCTGAATGGGGGAGCAGCGTTCCACTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS CCA 72 bp GTGAGCATTTCTGGCCTTCTTTGTTGCCATAGGTCCTaGCGCAGTGGAACGCTGCTCCCCCATTCAGGATGG +
Preference number: 6 (lower is better)
Translates to: VSISGLLCCHRS*RSGTLLPHSGW
Trigger: CCATCCTGAATGGGGGAGCAGCGTTCCACTGCGCCAGGACCTATGGCAACAAAGAAGGCCAGAAATGCTCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093402.12
ENSMUST00000110043.8
ENSMUST00000134089.8
CDS CAA 72 bp TCCTCGGGCTGCATACTGCCAGCAATACCGTTACTGTaGGCTGCCATGGCTGCCCCGTTGGTCATGTCCAAA +
Preference number: 6 (lower is better)
Translates to: SSGCILPAIPLL*AAMAAPLVMSK
Trigger: TTTGGACATGACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTGCTGGCAGTATGCAGCCCGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CAA 72 bp GGTCCTCGGAGATGGGTAACCCATTCTCACCCAGCCTaGGAGGAGGAAGATCGATATAGCCCAACTGGAGGC +
Preference number: 6 (lower is better)
Translates to: GPRRWVTHSHPA*EEEDRYSPTGG
Trigger: GCCTCCAGTTGGGCTATATCGATCTTCCTCCTCCAAGGCTGGGTGAGAATGGGTTACCCATCTCCGAGGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CAA 72 bp GGTGCCTGGAGACCTCGGTTACAGATGCTACAGAAGTaGCTGGGCCCCTCACTGTGCTTCTTCAGGTGGTCT +
Preference number: 6 (lower is better)
Translates to: GAWRPRLQMLQK*LGPSLCFFRWS
Trigger: AGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGGTCTCCAGGCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093402.12
ENSMUST00000134089.8
CDS CAA 90 bp AAGAGCATGATATCAGCCCGGGCAGGGGGCACGAGGATCTGCACGTaGGACTGTTTGATTACTTCCTGGCAGATCTCGATGACCGACCTC +
Preference number: 6 (lower is better)
Translates to: KSMISARAGGTRICT*DCLITSWQISMTDL
Trigger: GAGGTCGGTCATCGAGATCTGCCAGGAAGTAATCAAACAGTCCAACGTGCAGATCCTCGTGCCCCCTGCCCGGGCTGATATCATGCTCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 72 bp AGCATGATATCAGCCCGGGCAGGGGGCACGAGGATCTaGACGTTGGACTGTTTGATTACTTCCTGGCAGATC +
Preference number: 6 (lower is better)
Translates to: SMISARAGGTRI*TLDCLITSWQI
Trigger: GATCTGCCAGGAAGTAATCAAACAGTCCAACGTGCAGATCCTCGTGCCCCCTGCCCGGGCTGATATCATGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 72 bp AGCACGTCGCAAAAGCGCCCGCCGTTTTTGCGTTGTTaGTTCAGGTTGTGCAGCATCTCCGTACTGTGTCTG +
Preference number: 6 (lower is better)
Translates to: STSQKRPPFLRC*FRLCSISVLCL
Trigger: CAGACACAGTACGGAGATGCTGCACAACCTGAACCAACAACGCAAAAACGGCGGGCGCTTTTGCGACGTGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 72 bp CAATACCGTTACTGTTGGCTGCCATGGCTGCCCCGTTaGTCATGTCCAAAGGGAAGCCCAAGTCAGAAGTCC +
Preference number: 6 (lower is better)
Translates to: QYRYCWLPWLPR*SCPKGSPSQKS
Trigger: GGACTTCTGACTTGGGCTTCCCTTTGGACATGACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 72 bp TCTGGCCTTCTCGGTTACAGATGCTACAGAAGTTGCTaGGCCCCTCACTGTGCTTCTTCAGGTGGTCTGCCA +
Preference number: 6 (lower is better)
Translates to: SGLLGYRCYRSC*APHCASSGGLP
Trigger: TGGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGAAGGCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000154319.2
CDS CAA 72 bp CAAAAGCGCCCGCCGTTTTTGCGTTGTTGGTTCAGGTaGTGCAGCATCTCCGTACTGTGTCTGCTCACCTGG +
Preference number: 6 (lower is better)
Translates to: QKRPPFLRCWFR*CSISVLCLLTW
Trigger: CCAGGTGAGCAGACACAGTACGGAGATGCTGCACAACCTGAACCAACAACGCAAAAACGGCGGGCGCTTTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CAA 72 bp GAGCACGTCGCAAAAGCGCCCGCCGTTTTTGCGTTGTaGGTTCAGGTTGTGCAGCATCTCCGTACTGTGTCT +
Preference number: 6 (lower is better)
Translates to: EHVAKAPAVFAL*VQVVQHLRTVS
Trigger: AGACACAGTACGGAGATGCTGCACAACCTGAACCAACAACGCAAAAACGGCGGGCGCTTTTGCGACGTGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CAA 72 bp ACTCGTAGGAGCACGTCGCAAAAGCGCCCGCCGTTTTaGCGTTGTTGGTTCAGGTTGTGCAGCATCTCCGTA +
Preference number: 6 (lower is better)
Translates to: TRRSTSQKRPPF*RCWFRLCSISV
Trigger: TACGGAGATGCTGCACAACCTGAACCAACAACGCAAAAACGGCGGGCGCTTTTGCGACGTGCTCCTACGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CAA 72 bp GCAATACCGTTACTGTTGGCTGCCATGGCTGCCCCGTaGGTCATGTCCAAAGGGAAGCCCAAGTCAGAAGTC +
Preference number: 6 (lower is better)
Translates to: AIPLLLAAMAAP*VMSKGKPKSEV
Trigger: GACTTCTGACTTGGGCTTCCCTTTGGACATGACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS TCA 72 bp TTTCCCACAGCTCTGGCAGATGTACGGTTTGCCCACTaGCCCATCATGGGACCTCACATGGTACGACATTCG +
Preference number: 6 (lower is better)
Translates to: FPTALADVRFAH*PIMGPHMVRHS
Trigger: CGAATGTCGTACCATGTGAGGTCCCATGATGGGTCAGTGGGCAAACCGTACATCTGCCAGAGCTGTGGGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 72 bp CAGAGGAGAAACCTCGGTTACAGATGCTACAGAAGTTaGTGGGCCCCTCACTGTGCTTCTTCAGGTGGTCTG +
Preference number: 6 (lower is better)
Translates to: QRRNLGYRCYRS*WAPHCASSGGL
Trigger: CAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGGTTTCTCCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110043.8
CDS CCA 72 bp AGGAGAAACCTCGGTTACAGATGCTACAGAAGTTGCTaGGCCCCTCACTGTGCTTCTTCAGGTGGTCTGCCA +
Preference number: 6 (lower is better)
Translates to: RRNLGYRCYRSC*APHCASSGGLP
Trigger: TGGCAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGGTTTCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110043.8
CDS CAA 72 bp GCAGAGGAGAAACCTCGGTTACAGATGCTACAGAAGTaGCTGGGCCCCTCACTGTGCTTCTTCAGGTGGTCT +
Preference number: 6 (lower is better)
Translates to: AEEKPRLQMLQK*LGPSLCFFRWS
Trigger: AGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGGTTTCTCCTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110043.8
CDS TCA 72 bp ACGGCTTCTCCCCCGAGTGGGAAAGCTTATGCCGGTTaGGATGGTATACGTCACGAAAGATCTTGCCACAGA +
Preference number: 6 (lower is better)
Translates to: TASPPSGKAYAG*DGIRHERSCHR
Trigger: TCTGTGGCAAGATCTTTCGTGACGTATACCATCTCAACCGGCATAAGCTTTCCCACTCGGGGGAGAAGCCGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS GCA 72 bp ATTTCTGGCCTTCTCGGTTACAGATGCTACAGAAGTTaGTGGGCCCCTCACTGTGCTTCTTCAGGTGGTCTG +
Preference number: 6 (lower is better)
Translates to: ISGLLGYRCYRS*WAPHCASSGGL
Trigger: CAGACCACCTGAAGAAGCACAGTGAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGAAGGCCAGAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057089.13
ENSMUST00000154319.2
CDS CAA 72 bp TACGGCTTCTCCCCCGAGTGGGAAAGCTTATGCCGGTaGAGATGGTATACGTCACGAAAGATCTTGCCACAG +
Preference number: 6 (lower is better)
Translates to: YGFSPEWESLCR*RWYTSRKILPQ
Trigger: CTGTGGCAAGATCTTTCGTGACGTATACCATCTCAACCGGCATAAGCTTTCCCACTCGGGGGAGAAGCCGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS CCA 72 bp ACGAGGATCTGCACGTTGGACTGTTTGATTACTTCCTaGCAGATCTCGATGACCGACCTCATCAGCAGGAAC +
Preference number: 6 (lower is better)
Translates to: TRICTLDCLITS*QISMTDLISRN
Trigger: GTTCCTGCTGATGAGGTCGGTCATCGAGATCTGCCAGGAAGTAATCAAACAGTCCAACGTGCAGATCCTCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS TCA 72 bp GACACTTGTGAGGTCGCTCAGAAGTGTGCACCTGCTTaGTATGTCCATTCAAGTGATCTGGCCTGGAGAAAC +
Preference number: 6 (lower is better)
Translates to: DTCEVAQKCAPA*YVHSSDLAWRN
Trigger: GTTTCTCCAGGCCAGATCACTTGAATGGACATATCAAGCAGGTGCACACTTCTGAGCGACCTCACAAGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057089.13
ENSMUST00000093402.12
ENSMUST00000094471.10
ENSMUST00000110043.8
CDS TCA 72 bp ACCGTAGGAGTCGGAGCTCTCAATCAGATCCTGATGTaGGCATTTCTGGCCTTCTTTGTTGCCATAGGTCCT +
Preference number: 6 (lower is better)
Translates to: TVGVGALNQILM*AFLAFFVAIGP
Trigger: AGGACCTATGGCAACAAAGAAGGCCAGAAATGCTCACATCAGGATCTGATTGAGAGCTCCGACTCCTACGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110043.8