Pregenerated sensors for PATL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027233Ensembl transcript IDs: ENSMUST00000028665.5
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATAACAAAGCGCCACCGTTGCTGCTaGTGCAGGATCTGCTGGTGC | + |
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Preference number: 4 (lower is better) Translates to: LDFKKGYDNVAGSSNITKRHRCC*CRICWC Trigger: GCACCAGCAGATCCTGCAGCAGCAGCAACGGTGGCG...CTTTGTTATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR GCA 90 bp | AGTCACCTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATACCCGAAGCCTCTGGCTaGTCGCAGCTCCTGTATCCT | + |
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Preference number: 4 (lower is better) Translates to: SHLDFKKGYDNVAGSSNIPEASG*SQLLYP Trigger: AGGATACAGGAGCTGCGAGCAGCCAGAGGCTTCGGG...TATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAGGTGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CCA 90 bp | CTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTCTGGCTTCCAGCGAGACCAAGGCTTCTaGGCGGGGACACTTCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: LTLTNTSVDTGKLHSGFQRDQGF*AGTLLA Trigger: AGCAAGAAGTGTCCCCGCCCAGAAGCCTTGGTCTCG...CTGGAAGCCAGAATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CCA 90 bp | CAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTCTGGCAGGGAAGCAGATTCCTaGGGAAGGCTAGAGGCTCCG | + |
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Preference number: 4 (lower is better) Translates to: QLLTLTNTSVDTGKLHSGREADS*GRLEAP Trigger: CGGAGCCTCTAGCCTTCCCCAGGAATCTGCTTCCCT...GCCAGAATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR TCA 90 bp | CTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTCTGGCTTCCAGGATGCTGCAGGCAACTaGGCTATCTCCCAGGCAATC | + |
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Preference number: 4 (lower is better) Translates to: LTLTNTSVDTGKLHSGFQDAAGN*AISQAI Trigger: GATTGCCTGGGAGATAGCTCAGTTGCCTGCAGCATC...CTGGAAGCCAGAATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR GCA 90 bp | CTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTCTGGCTTCCAGACTCTGTGGGAACTGTaGAGCCCTCTCTGCTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: LTLTNTSVDTGKLHSGFQTLWEL*SPLCCG Trigger: ACCACAGCAGAGAGGGCTGCACAGTTCCCACAGAGT...CTGGAAGCCAGAATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR GCA 90 bp | CAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTCTGGCCTCCGCCAAGGATGCTaGAGGCAACTGAGCTATCTC | + |
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Preference number: 4 (lower is better) Translates to: QLLTLTNTSVDTGKLHSGLRQGC*RQLSYL Trigger: GAGATAGCTCAGTTGCCTGCAGCATCCTTGGCGGAG...GCCAGAATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTG 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR GCA 90 bp | CTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTCTGGCTTCCAGAGGCTCCGCCAAGGATaGTGCAGGCAACTGAGCTAT | + |
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Preference number: 4 (lower is better) Translates to: LTLTNTSVDTGKLHSGFQRLRQG*CRQLSY Trigger: ATAGCTCAGTTGCCTGCAGCATCCTTGGCGGAGCCT...CTGGAAGCCAGAATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAG 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR TCA 90 bp | ATATTTCAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATAGGAGGCTAACAGCTTaGTCCGGGGGCAGGAAGGGG | + |
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Preference number: 4 (lower is better) Translates to: IFQLLTLTNTSVDTGKLHRRLTA*SGGRKG Trigger: CCCCTTCCTGCCCCCGGATCAAGCTGTTAGCCTCCT...ATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTGAAATAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR GCA 90 bp | CTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTCTGGCTTCCAGCAGGAGGTTATCTGCTaGCTCCTCCAGGTTGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: LTLTNTSVDTGKLHSGFQQEVIC*LLQVVL Trigger: CAGAACAACCTGGAGGAGGCAGCAGATAACCTCCTG...CTGGAAGCCAGAATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR GCA 90 bp | CAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTCTGGCCTCACAGACAGCACTTaGAGGAGGTTATCTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: QLLTLTNTSVDTGKLHSGLTDST*RRLSAA Trigger: GGCAGCAGATAACCTCCTGCAAGTGCTGTCTGTGAG...GCCAGAATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CCA 90 bp | CTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATAACAAAGGGGCCACGGGGTCAGTaGGCTGTAGAACAGAAAAGG | + |
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Preference number: 4 (lower is better) Translates to: LDFKKGYDNVAGSSNITKGPRGQ*AVEQKR Trigger: CCTTTTCTGTTCTACAGCCCACTGACCCCGTGGCCC...CTTTGTTATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR TCA 90 bp | ATATTTCAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATAGGATCTGCTGGTGCTaGGGGTGGAGCTGGGTCAGA | + |
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Preference number: 4 (lower is better) Translates to: IFQLLTLTNTSVDTGKLHRICWC*GWSWVR Trigger: TCTGACCCAGCTCCACCCTCAGCACCAGCAGATCCT...ATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTGAAATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR TCA 90 bp | AGTCACCTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATAACCAGCTGCTCTCCATaGCTCAGCAAGGCATATAGC | + |
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Preference number: 4 (lower is better) Translates to: SHLDFKKGYDNVAGSSNITSCSP*LSKAYS Trigger: GCTATATGCCTTGCTGAGTCATGGAGAGCAGCTGGT...TATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAGGTGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR GCA 90 bp | ATATTTCAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATCTCCTACGCCACCGTTaGTGCTGCTGCAGGATCTGC | + |
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Preference number: 4 (lower is better) Translates to: IFQLLTLTNTSVDTGKLHLLRHR*CCCRIC Trigger: GCAGATCCTGCAGCAGCAGCAACGGTGGCGTAGGAG...ATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTGAAATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR GCA 90 bp | AGTCACCTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATACAAGTCTGTCCAGGTTaGACAGTCACTGCTGGATCG | + |
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Preference number: 4 (lower is better) Translates to: SHLDFKKGYDNVAGSSNIQVCPG*TVTAGS Trigger: CGATCCAGCAGTGACTGTGCAACCTGGACAGACTTG...TATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAGGTGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CCA 90 bp | AGTCACCTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATAGTTGATACAGCTACCTaGCCCAGGGAACCCTCAATC | + |
|
Preference number: 4 (lower is better) Translates to: SHLDFKKGYDNVAGSSNIVDTAT*PREPSI Trigger: GATTGAGGGTTCCCTGGGCCAGGTAGCTGTATCAAC...TATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAGGTGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR TCA 90 bp | CTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATAACAAAGTGTTGCGGTCCAAAATaGTGGGCTGGAGAACTGGCT | + |
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Preference number: 4 (lower is better) Translates to: LDFKKGYDNVAGSSNITKCCGPK*WAGELA Trigger: AGCCAGTTCTCCAGCCCATCATTTTGGACCGCAACA...CTTTGTTATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CCA 90 bp | CAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTCTGGCAGACAGAGAACTTGCTaGGTCTCTGCTGTAAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: QLLTLTNTSVDTGKLHSGRQRTC*VSAVSA Trigger: TGCACTTACAGCAGAGACCCAGCAAGTTCTCTGTCT...GCCAGAATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CCA 90 bp | CTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTCTGGCTTCCAGTTCTCTTCCTCCAGTTaGAAGGCACACACTAAGCCT | + |
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Preference number: 4 (lower is better) Translates to: LTLTNTSVDTGKLHSGFQFSSSS*KAHTKP Trigger: AGGCTTAGTGTGTGCCTTCCAACTGGAGGAAGAGAA...CTGGAAGCCAGAATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CCA 90 bp | AGTCACCTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATAGATGGGCTGGAGAACTaGCTCTTGGAAACACAGACT | + |
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Preference number: 4 (lower is better) Translates to: SHLDFKKGYDNVAGSSNIDGLEN*LLETQT Trigger: AGTCTGTGTTTCCAAGAGCCAGTTCTCCAGCCCATC...TATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAGGTGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CCA 90 bp | ATATTTCAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTCAGCCATGTCCCTCTaGATCAGGAGGGGCAGATGG | + |
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Preference number: 4 (lower is better) Translates to: IFQLLTLTNTSVDTGKLHSAMSL*IRRGRW Trigger: CCATCTGCCCCTCCTGATCCAGAGGGACATGGCTGA...ATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTGAAATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR TCA 90 bp | ATATTTCAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATAGGCACCAGAGACCTTaGCTCTGTGGGAACTGTGCA | + |
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Preference number: 4 (lower is better) Translates to: IFQLLTLTNTSVDTGKLHRHQRP*LCGNCA Trigger: TGCACAGTTCCCACAGAGTCAAGGTCTCTGGTGCCT...ATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTGAAATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CCA 90 bp | CAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTCTGGCTCCAAAATGATGGGCTaGAGAACTGGCTCTTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: QLLTLTNTSVDTGKLHSGSKMMG*RTGSWK Trigger: TTTCCAAGAGCCAGTTCTCCAGCCCATCATTTTGGA...GCCAGAATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CCA 90 bp | ATATTTCAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATAATACCCGAAGCCTCTaGCTGCTCGCAGCTCCTGTA | + |
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Preference number: 4 (lower is better) Translates to: IFQLLTLTNTSVDTGKLHNTRSL*LLAAPV Trigger: TACAGGAGCTGCGAGCAGCCAGAGGCTTCGGGTATT...ATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTGAAATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR GCA 90 bp | CTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATAACAAAGGGTCTCTGCTGTAAGTaGAGACCTTCAAGGCATTTC | + |
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Preference number: 4 (lower is better) Translates to: LDFKKGYDNVAGSSNITKGLCCK*RPSRHF Trigger: GAAATGCCTTGAAGGTCTGCACTTACAGCAGAGACC...CTTTGTTATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR GCA 90 bp | CTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATAACAAAGGACTGCCACATAAAATaGAGGGAGGCTGATGACATC | + |
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Preference number: 4 (lower is better) Translates to: LDFKKGYDNVAGSSNITKDCHIK*READDI Trigger: GATGTCATCAGCCTCCCTGCATTTTATGTGGCAGTC...CTTTGTTATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR GCA 90 bp | ATATTTCAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATAGGTTGCACAGTCACTaGTGGATCGGAGGGAAGGAT | + |
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Preference number: 4 (lower is better) Translates to: IFQLLTLTNTSVDTGKLHRLHSH*WIGGKD Trigger: ATCCTTCCCTCCGATCCAGCAGTGACTGTGCAACCT...ATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTGAAATAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CCA 90 bp | CTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATAACAAAGCAGCCCTCTCTGCTGTaGTACTTGGGTATTTTGGAA | + |
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Preference number: 4 (lower is better) Translates to: LDFKKGYDNVAGSSNITKQPSLL*YLGILE Trigger: TTCCAAAATACCCAAGTACCACAGCAGAGAGGGCTG...CTTTGTTATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CCA 90 bp | ATATTTCAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATAGTGTGGTAGAGTTGTaGGAGCCCATCATTCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: IFQLLTLTNTSVDTGKLHSVVEL*EPIILA Trigger: GGCCAGAATGATGGGCTCCCACAACTCTACCACACT...ATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTGAAATAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CCA 90 bp | ATATTTCAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATAAGAGCTTCTCAACCTaGCTGCTCTGTTCCCGAGTG | + |
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Preference number: 4 (lower is better) Translates to: IFQLLTLTNTSVDTGKLHKSFST*LLCSRV Trigger: CACTCGGGAACAGAGCAGCCAGGTTGAGAAGCTCTT...ATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTGAAATAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR TCA 90 bp | ATATTTCAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATAGGGCTAAAACATGTTaGTACAGCTACCTGGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: IFQLLTLTNTSVDTGKLHRAKTC*YSYLAQ Trigger: CTGGGCCAGGTAGCTGTATCAACATGTTTTAGCCCT...ATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTGAAATAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR TCA 90 bp | CTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATAACAAAGGGAAGGTCAGATGACTaGTATATTTCCCCAGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: LDFKKGYDNVAGSSNITKGRSDD*YISPEV Trigger: AACCTCTGGGGAAATATATCAGTCATCTGACCTTCC...CTTTGTTATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CCA 90 bp | CTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATAACAAAGAACATCTTCTCAATCTaGGACAATACCCGAAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: LDFKKGYDNVAGSSNITKNIFSI*DNTRSL Trigger: GAGGCTTCGGGTATTGTCCCAGATTGAGAAGATGTT...CTTTGTTATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR TCA 90 bp | ATATTTCAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTGGGTTTTTAAGGCCTaGAAGAGCTTCTCAACCTGG | + |
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Preference number: 4 (lower is better) Translates to: IFQLLTLTNTSVDTGKLHWVFKA*KSFSTW Trigger: CCAGGTTGAGAAGCTCTTTCAGGCCTTAAAAACCCA...ATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTGAAATAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR TCA 90 bp | ATATTTCAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATAATTGCTTGTCCATGTaGTGGCAGAACAGGGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: IFQLLTLTNTSVDTGKLHNCLSM*WQNREA Trigger: TGCTTCCCTGTTCTGCCATCACATGGACAAGCAATT...ATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTGAAATAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR TCA 90 bp | ATATTTCAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTTCTGGAGCCTGATCTaGACACACACATTCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: IFQLLTLTNTSVDTGKLHFWSLI*THTFIF Trigger: GAAGATGAATGTGTGTGTTCAGATCAGGCTCCAGAA...ATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTGAAATAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR GCA 90 bp | ATATTTCAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATCTTGGAAACACAGACTaGCACATAAAATGCAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: IFQLLTLTNTSVDTGKLHLGNTD*HIKCRE Trigger: CTCCCTGCATTTTATGTGGCAGTCTGTGTTTCCAAG...ATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTGAAATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS TCA 90 bp | CACCCAGTCCTTCTCTTTTCGGGTCATGAGGTTAGCATAGGCATCTaGGGCAGCTGGCTCACGAGACCAAGGCTTCTGGGCGGGGACACT | + |
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Preference number: 5 (lower is better) Translates to: HPVLLFSGHEVSIGI*GSWLTRPRLLGGDT Trigger: AGTGTCCCCGCCCAGAAGCCTTGGTCTCGTGAGCCAGCTGCCTCAGATGCCTATGCTAACCTCATGACCCGAAAAGAGAAGGACTGGGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CCA 90 bp | CTGTGGGAACTGTGCAGCCCTCTCTGCTGTGGTACTTGGGTATTTTaGAAGGCGCTCACTATGGCTGGATCCCCGAGACCACACCCTTCC | + |
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Preference number: 5 (lower is better) Translates to: LWELCSPLCCGTWVF*KALTMAGSPRPHPS Trigger: GGAAGGGTGTGGTCTCGGGGATCCAGCCATAGTGAGCGCCTTCCAAAATACCCAAGTACCACAGCAGAGAGGGCTGCACAGTTCCCACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS TCA 90 bp | TTCCTGGGGAAGGCTAGAGGCTCCGCCAAGGATGCTGCAGGCAACTaGGCTATCTCCCAGGCAATCAGAATCACCAAGTCTGTCCAGGTT | + |
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Preference number: 5 (lower is better) Translates to: FLGKARGSAKDAAGN*AISQAIRITKSVQV Trigger: AACCTGGACAGACTTGGTGATTCTGATTGCCTGGGAGATAGCTCAGTTGCCTGCAGCATCCTTGGCGGAGCCTCTAGCCTTCCCCAGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS GCA 90 bp | AGCAGCCGAGCCACCAAAACTTTCCCTTTCCTCACAGACAGCACTTaGAGGAGGTTATCTGCTGCCTCCTCCAGGTTGTTCTGCTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: SSRATKTFPFLTDST*RRLSAASSRLFCSW Trigger: CCAGGAGCAGAACAACCTGGAGGAGGCAGCAGATAACCTCCTGCAAGTGCTGTCTGTGAGGAAAGGGAAAGTTTTGGTGGCTCGGCTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS GCA 90 bp | CCCAGGCAATCAGAATCACCAAGTCTGTCCAGGTTGCACAGTCACTaGTGGATCGGAGGGAAGGATCCAGGGATACCAGCTGCTCTCCAT | + |
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Preference number: 5 (lower is better) Translates to: PRQSESPSLSRLHSH*WIGGKDPGIPAALH Trigger: ATGGAGAGCAGCTGGTATCCCTGGATCCTTCCCTCCGATCCAGCAGTGACTGTGCAACCTGGACAGACTTGGTGATTCTGATTGCCTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS GCA 90 bp | CTGAGCTATCTCCCAGGCAATCAGAATCACCAAGTCTGTCCAGGTTaGACAGTCACTGCTGGATCGGAGGGAAGGATCCAGGGATACCAG | + |
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Preference number: 5 (lower is better) Translates to: LSYLPGNQNHQVCPG*TVTAGSEGRIQGYQ Trigger: CTGGTATCCCTGGATCCTTCCCTCCGATCCAGCAGTGACTGTGCAACCTGGACAGACTTGGTGATTCTGATTGCCTGGGAGATAGCTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CCA 90 bp | AGGCAATCAGAATCACCAAGTCTGTCCAGGTTGCACAGTCACTGCTaGATCGGAGGGAAGGATCCAGGGATACCAGCTGCTCTCCATGAC | + |
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Preference number: 5 (lower is better) Translates to: RQSESPSLSRLHSHC*IGGKDPGIPAALHD Trigger: GTCATGGAGAGCAGCTGGTATCCCTGGATCCTTCCCTCCGATCCAGCAGTGACTGTGCAACCTGGACAGACTTGGTGATTCTGATTGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS GCA 90 bp | GAAGGAACATCTTCTCAATCTGGGACAATACCCGAAGCCTCTGGCTaGTCGCAGCTCCTGTATCCTGCTCTTGGGTTCCGTGAGATACAG | + |
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Preference number: 5 (lower is better) Translates to: EGTSSQSGTIPEASG*SQLLYPALGFREIQ Trigger: CTGTATCTCACGGAACCCAAGAGCAGGATACAGGAGCTGCGAGCAGCCAGAGGCTTCGGGTATTGTCCCAGATTGAGAAGATGTTCCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS GCA 90 bp | TCTGCTCCTGGGTTTTTAAGGCCTGAAAGAGCTTCTCAACCTGGCTaGTCTGTTCCCGAGTGTGGTAGAGTTGTGGGAGCCCATCATTCT | + |
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Preference number: 5 (lower is better) Translates to: SAPGFLRPERASQPG*SVPECGRVVGAHHS Trigger: AGAATGATGGGCTCCCACAACTCTACCACACTCGGGAACAGAGCAGCCAGGTTGAGAAGCTCTTTCAGGCCTTAAAAACCCAGGAGCAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CAA 90 bp | CAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTCTGGCCCTCCTACGCCACCGTaGCTGCTGCTGCAGGATCTG | + |
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Preference number: 5 (lower is better) Translates to: QLLTLTNTSVDTGKLHSGPPTPP*LLLQDL Trigger: CAGATCCTGCAGCAGCAGCAACGGTGGCGTAGGAGG...GCCAGAATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CAA 90 bp | CAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTCTGGCGAGGAGGCTAACAGCTaGATCCGGGGGCAGGAAGGG | + |
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Preference number: 5 (lower is better) Translates to: QLLTLTNTSVDTGKLHSGEEANS*IRGQEG Trigger: CCCTTCCTGCCCCCGGATCAAGCTGTTAGCCTCCTC...GCCAGAATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CAA 90 bp | CAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATTCTGGCAAGGCACCAGAGACCTaGACTCTGTGGGAACTGTGC | + |
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Preference number: 5 (lower is better) Translates to: QLLTLTNTSVDTGKLHSGKAPET*TLWELC Trigger: GCACAGTTCCCACAGAGTCAAGGTCTCTGGTGCCTT...GCCAGAATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CAA 90 bp | AGTCACCTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATACCTCACAGACAGCACTaGCAGGAGGTTATCTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: SHLDFKKGYDNVAGSSNIPHRQH*QEVICC Trigger: GCAGCAGATAACCTCCTGCAAGTGCTGTCTGTGAGG...TATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAGGTGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CAA 90 bp | CTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATAACAAAGCCAAGTCTGTCCAGGTaGCACAGTCACTGCTGGATC | + |
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Preference number: 5 (lower is better) Translates to: LDFKKGYDNVAGSSNITKPSLSR*HSHCWI Trigger: GATCCAGCAGTGACTGTGCAACCTGGACAGACTTGG...CTTTGTTATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CAA 90 bp | CTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATAACAAAGCTGGAGAACTGGCTCTaGGAAACACAGACTGCCACA | + |
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Preference number: 5 (lower is better) Translates to: LDFKKGYDNVAGSSNITKLENWL*ETQTAT Trigger: TGTGGCAGTCTGTGTTTCCAAGAGCCAGTTCTCCAG...CTTTGTTATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CAA 90 bp | CTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATAACAAAGAAGGAGACAGAGAACTaGCTGGGTCTCTGCTGTAAG | + |
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Preference number: 5 (lower is better) Translates to: LDFKKGYDNVAGSSNITKKETEN*LGLCCK Trigger: CTTACAGCAGAGACCCAGCAAGTTCTCTGTCTCCTT...CTTTGTTATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CAA 90 bp | CTAGATTTTAAGAAAGGATATGACAATGTGGCAGGGTCCTCCAACATAACAAAGGTTCTCACTCTGCAGTaGAACCATCTGCACTCTTAT | + |
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Preference number: 5 (lower is better) Translates to: LDFKKGYDNVAGSSNITKVLTLQ*NHLHSY Trigger: ATAAGAGTGCAGATGGTTCAACTGCAGAGTGAGAAC...CTTTGTTATGTTGGAGGACCCTGCCACATTGTCATATCCTTTCTTAAAATCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS-3UTR CAA 90 bp | ATATTTCAGCTTCTCACATTAACTAATACATCAGTAGATACAGGCAAGCTCCATACATTAGTCCTTGCATaGCATGGAGGAGCTGATGGA | + |
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Preference number: 5 (lower is better) Translates to: IFQLLTLTNTSVDTGKLHTLVLA*HGGADG Trigger: TCCATCAGCTCCTCCATGCAATGCAAGGACTAATGT...ATGGAGCTTGCCTGTATCTACTGATGTATTAGTTAATGTGAGAAGCTGAAATAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CAA 72 bp | ACTTCTTGCTGTTGGACTCCGCCTCCTACGCCACCGTaGCTGCTGCTGCAGGATCTGCTGGTGCTGAGGGTG | + |
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Preference number: 6 (lower is better) Translates to: TSCCWTPPPTPP*LLLQDLLVLRV Trigger: CACCCTCAGCACCAGCAGATCCTGCAGCAGCAGCAACGGTGGCGTAGGAGGCGGAGTCCAACAGCAAGAAGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CAA 72 bp | CAGATGGTAGGTGATGTACAGGAGGAGGCTAACAGCTaGATCCGGGGGCAGGAAGGGGAGCAGCCGAGCCAC | + |
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Preference number: 6 (lower is better) Translates to: QMVGDVQEEANS*IRGQEGEQPSH Trigger: GTGGCTCGGCTGCTCCCCTTCCTGCCCCCGGATCAAGCTGTTAGCCTCCTCCTGTACATCACCTACCATCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CAA 72 bp | AAGCCTCTGGCTGCTCGCAGCTCCTGTATCCTGCTCTaGGGTTCCGTGAGATACAGCGTCAATAGCTCGGCG | + |
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Preference number: 6 (lower is better) Translates to: KPLAARSSCILL*GSVRYSVNSSA Trigger: CGCCGAGCTATTGACGCTGTATCTCACGGAACCCAAGAGCAGGATACAGGAGCTGCGAGCAGCCAGAGGCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CAA 90 bp | TCTGTGGGAACTGTGCAGCCCTCTCTGCTGTGGTACTTGGGTATTTaGGAAGGCGCTCACTATGGCTGGATCCCCGAGACCACACCCTTC | + |
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Preference number: 6 (lower is better) Translates to: SVGTVQPSLLWYLGI*EGAHYGWIPETTPF Trigger: GAAGGGTGTGGTCTCGGGGATCCAGCCATAGTGAGCGCCTTCCAAAATACCCAAGTACCACAGCAGAGAGGGCTGCACAGTTCCCACAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CCA 72 bp | CTGTGCAGCCCTCTCTGCTGTGGTACTTGGGTATTTTaGAAGGCGCTCACTATGGCTGGATCCCCGAGACCA | + |
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Preference number: 6 (lower is better) Translates to: LCSPLCCGTWVF*KALTMAGSPRP Trigger: TGGTCTCGGGGATCCAGCCATAGTGAGCGCCTTCCAAAATACCCAAGTACCACAGCAGAGAGGGCTGCACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CCA 72 bp | GATGACATCCCCAAGGCACCAGAGACCTTGACTCTGTaGGAACTGTGCAGCCCTCTCTGCTGTGGTACTTGG | + |
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Preference number: 6 (lower is better) Translates to: DDIPKAPETLTL*ELCSPLCCGTW Trigger: CCAAGTACCACAGCAGAGAGGGCTGCACAGTTCCCACAGAGTCAAGGTCTCTGGTGCCTTGGGGATGTCATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CCA 72 bp | GCTCGGCGAGGGCTAAAACATGTTGATACAGCTACCTaGCCCAGGGAACCCTCAATCCGCACCACTGACTCA | + |
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Preference number: 6 (lower is better) Translates to: ARRGLKHVDTAT*PREPSIRTTDS Trigger: TGAGTCAGTGGTGCGGATTGAGGGTTCCCTGGGCCAGGTAGCTGTATCAACATGTTTTAGCCCTCGCCGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CAA 72 bp | ACTGTGCAGCCCTCTCTGCTGTGGTACTTGGGTATTTaGGAAGGCGCTCACTATGGCTGGATCCCCGAGACC | + |
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Preference number: 6 (lower is better) Translates to: TVQPSLLWYLGI*EGAHYGWIPET Trigger: GGTCTCGGGGATCCAGCCATAGTGAGCGCCTTCCAAAATACCCAAGTACCACAGCAGAGAGGGCTGCACAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CAA 90 bp | GAGCAGCCGAGCCACCAAAACTTTCCCTTTCCTCACAGACAGCACTaGCAGGAGGTTATCTGCTGCCTCCTCCAGGTTGTTCTGCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: EQPSHQNFPFPHRQH*QEVICCLLQVVLLL Trigger: CAGGAGCAGAACAACCTGGAGGAGGCAGCAGATAACCTCCTGCAAGTGCTGTCTGTGAGGAAAGGGAAAGTTTTGGTGGCTCGGCTGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS TCA 72 bp | CTTCTCTTTTCGGGTCATGAGGTTAGCATAGGCATCTaGGGCAGCTGGCTCACGAGACCAAGGCTTCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: LLFSGHEVSIGI*GSWLTRPRLLG Trigger: GCCCAGAAGCCTTGGTCTCGTGAGCCAGCTGCCTCAGATGCCTATGCTAACCTCATGACCCGAAAAGAGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS GCA 72 bp | TCTTCTCAATCTGGGACAATACCCGAAGCCTCTGGCTaGTCGCAGCTCCTGTATCCTGCTCTTGGGTTCCGT | + |
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Preference number: 6 (lower is better) Translates to: SSQSGTIPEASG*SQLLYPALGFR Trigger: ACGGAACCCAAGAGCAGGATACAGGAGCTGCGAGCAGCCAGAGGCTTCGGGTATTGTCCCAGATTGAGAAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS GCA 72 bp | CTCCCAGGCAATCAGAATCACCAAGTCTGTCCAGGTTaGACAGTCACTGCTGGATCGGAGGGAAGGATCCAG | + |
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Preference number: 6 (lower is better) Translates to: LPGNQNHQVCPG*TVTAGSEGRIQ Trigger: CTGGATCCTTCCCTCCGATCCAGCAGTGACTGTGCAACCTGGACAGACTTGGTGATTCTGATTGCCTGGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CCA 72 bp | GCTGTGGTACTTGGGTATTTTGGAAGGCGCTCACTATaGCTGGATCCCCGAGACCACACCCTTCCTCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: AVVLGYFGRRSL*LDPRDHTLPPS Trigger: TGAAGGAGGAAGGGTGTGGTCTCGGGGATCCAGCCATAGTGAGCGCCTTCCAAAATACCCAAGTACCACAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CCA 72 bp | CTGTGGGAACTGTGCAGCCCTCTCTGCTGTGGTACTTaGGTATTTTGGAAGGCGCTCACTATGGCTGGATCC | + |
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Preference number: 6 (lower is better) Translates to: LWELCSPLCCGT*VFWKALTMAGS Trigger: GGATCCAGCCATAGTGAGCGCCTTCCAAAATACCCAAGTACCACAGCAGAGAGGGCTGCACAGTTCCCACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CAA 90 bp | ATAAAATGCAGGGAGGCTGATGACATCCCCAAGGCACCAGAGACCTaGACTCTGTGGGAACTGTGCAGCCCTCTCTGCTGTGGTACTTGG | + |
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Preference number: 6 (lower is better) Translates to: IKCREADDIPKAPET*TLWELCSPLCCGTW Trigger: CCAAGTACCACAGCAGAGAGGGCTGCACAGTTCCCACAGAGTCAAGGTCTCTGGTGCCTTGGGGATGTCATCAGCCTCCCTGCATTTTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS TCA 72 bp | AGCTACCTGGCCCAGGGAACCCTCAATCCGCACCACTaGCTCATAAACTTCAGGCTTCTGGATGTAAGGCGT | + |
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Preference number: 6 (lower is better) Translates to: SYLAQGTLNPHH*LINFRLLDVRR Trigger: ACGCCTTACATCCAGAAGCCTGAAGTTTATGAGTCAGTGGTGCGGATTGAGGGTTCCCTGGGCCAGGTAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS TCA 72 bp | TACAGCGTCAATAGCTCGGCGAGGGCTAAAACATGTTaGTACAGCTACCTGGCCCAGGGAACCCTCAATCCG | + |
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Preference number: 6 (lower is better) Translates to: YSVNSSARAKTC*YSYLAQGTLNP Trigger: CGGATTGAGGGTTCCCTGGGCCAGGTAGCTGTATCAACATGTTTTAGCCCTCGCCGAGCTATTGACGCTGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS TCA 72 bp | AAGGCTAGAGGCTCCGCCAAGGATGCTGCAGGCAACTaGGCTATCTCCCAGGCAATCAGAATCACCAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: KARGSAKDAAGN*AISQAIRITKS Trigger: AGACTTGGTGATTCTGATTGCCTGGGAGATAGCTCAGTTGCCTGCAGCATCCTTGGCGGAGCCTCTAGCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS GCA 72 bp | GGGTTTTTAAGGCCTGAAAGAGCTTCTCAACCTGGCTaGTCTGTTCCCGAGTGTGGTAGAGTTGTGGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: GFLRPERASQPG*SVPECGRVVGA Trigger: GGCTCCCACAACTCTACCACACTCGGGAACAGAGCAGCCAGGTTGAGAAGCTCTTTCAGGCCTTAAAAACCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CCA 72 bp | TGGTACTTGGGTATTTTGGAAGGCGCTCACTATGGCTaGATCCCCGAGACCACACCCTTCCTCCTTCACTTC | + |
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Preference number: 6 (lower is better) Translates to: WYLGILEGAHYG*IPETTPFLLHF Trigger: GAAGTGAAGGAGGAAGGGTGTGGTCTCGGGGATCCAGCCATAGTGAGCGCCTTCCAAAATACCCAAGTACCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CCA 72 bp | CTTGACTCTGTGGGAACTGTGCAGCCCTCTCTGCTGTaGTACTTGGGTATTTTGGAAGGCGCTCACTATGGC | + |
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Preference number: 6 (lower is better) Translates to: LDSVGTVQPSLL*YLGILEGAHYG Trigger: GCCATAGTGAGCGCCTTCCAAAATACCCAAGTACCACAGCAGAGAGGGCTGCACAGTTCCCACAGAGTCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CAA 72 bp | TCTGTGGGAACTGTGCAGCCCTCTCTGCTGTGGTACTaGGGTATTTTGGAAGGCGCTCACTATGGCTGGATC | + |
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Preference number: 6 (lower is better) Translates to: SVGTVQPSLLWY*GILEGAHYGWI Trigger: GATCCAGCCATAGTGAGCGCCTTCCAAAATACCCAAGTACCACAGCAGAGAGGGCTGCACAGTTCCCACAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CAA 90 bp | ACTGAGCTATCTCCCAGGCAATCAGAATCACCAAGTCTGTCCAGGTaGCACAGTCACTGCTGGATCGGAGGGAAGGATCCAGGGATACCA | + |
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Preference number: 6 (lower is better) Translates to: TELSPRQSESPSLSR*HSHCWIGGKDPGIP Trigger: TGGTATCCCTGGATCCTTCCCTCCGATCCAGCAGTGACTGTGCAACCTGGACAGACTTGGTGATTCTGATTGCCTGGGAGATAGCTCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS GCA 72 bp | CTAAGCCTTCTTCAGGAGCCAAGGAGACAGAGAACTTaGTGGGTCTCTGCTGTAAGTGCAGACCTTCAAGGC | + |
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Preference number: 6 (lower is better) Translates to: LSLLQEPRRQRT*WVSAVSADLQG Trigger: GCCTTGAAGGTCTGCACTTACAGCAGAGACCCAGCAAGTTCTCTGTCTCCTTGGCTCCTGAAGAAGGCTTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS GCA 72 bp | GAACTGGCTCTTGGAAACACAGACTGCCACATAAAATaGAGGGAGGCTGATGACATCCCCAAGGCACCAGAG | + |
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Preference number: 6 (lower is better) Translates to: ELALGNTDCHIK*READDIPKAPE Trigger: CTCTGGTGCCTTGGGGATGTCATCAGCCTCCCTGCATTTTATGTGGCAGTCTGTGTTTCCAAGAGCCAGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS CAA 72 bp | AGGCGTGACCAACTTGAGAGACTCAGCCCTGGTCTTTaGTCCAAGCAGCTCTTTGTCTGCCTGTCTCTTCTC | + |
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Preference number: 6 (lower is better) Translates to: RRDQLERLSPGL*SKQLFVCLSLL Trigger: GAGAAGAGACAGGCAGACAAAGAGCTGCTTGGACAAAAGACCAGGGCTGAGTCTCTCAAGTTGGTCACGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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| CDS TCA 72 bp | AGAAAAGGATCTGGTGAAGGCTGTTGCGGTCCAAAATaGTGGGCTGGAGAACTGGCTCTTGGAAACACAGAC | + |
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Preference number: 6 (lower is better) Translates to: RKGSGEGCCGPK*WAGELALGNTD Trigger: GTCTGTGTTTCCAAGAGCCAGTTCTCCAGCCCATCATTTTGGACCGCAACAGCCTTCACCAGATCCTTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028665.5 |
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