Pregenerated sensors for PATL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046139Ensembl transcript IDs: ENSMUST00000061618.9, ENSMUST00000238190.2
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGAGGAGCAGAAGCATGGCTTACAGAAGTCACGTCAGGAAGACAGTaGAGGCGCACAAAAGCTACACTGCAGAAGCAGGCTCTACGTGAG | + |
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Preference number: 1 (lower is better) Translates to: RGAEAWLTEVTSGRQ*RRTKATLQKQALRE Trigger: CTCACGTAGAGCCTGCTTCTGCAGTGTAGCTTTTGTGCGCCTGCACTGTCTTCCTGACGTGACTTCTGTAAGCCATGCTTCTGCTCCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR TCA 90 bp | ACAGTGCAGGCGCACAAAAGCTACACTGCAGAAGCAGGCTCTACGTaGGGCTCATCTTGGGTACTCTTGAATGCACTTGAGGGACAGACT | + |
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Preference number: 1 (lower is better) Translates to: TVQAHKSYTAEAGST*GSSWVLLNALEGQT Trigger: AGTCTGTCCCTCAAGTGCATTCAAGAGTACCCAAGATGAGCCTCACGTAGAGCCTGCTTCTGCAGTGTAGCTTTTGTGCGCCTGCACTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR GCA 90 bp | CAGAAGTCACGTCAGGAAGACAGTGCAGGCGCACAAAAGCTACACTaGAGAAGCAGGCTCTACGTGAGGCTCATCTTGGGTACTCTTGAA | + |
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Preference number: 1 (lower is better) Translates to: QKSRQEDSAGAQKLH*RSRLYVRLILGTLE Trigger: TTCAAGAGTACCCAAGATGAGCCTCACGTAGAGCCTGCTTCTGCAGTGTAGCTTTTGTGCGCCTGCACTGTCTTCCTGACGTGACTTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR CCA 90 bp | GACACTAGATTTGTAGGGATAGAGATTGGTTTGGCCAGGGCAGCTTaGGGGATCCGTAGAAGTTCTCGGGTTGCCATGAACATCACCTCT | + |
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Preference number: 1 (lower is better) Translates to: DTRFVGIEIGLARAA*GIRRSSRVAMNITS Trigger: AGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR CCA 90 bp | AGCAGAAGTACCACCCAGCAGAAGTATCAGAGCAGCGGGAATACCTaGCATTCAGAGCTAACTTCTGAAAACAGGAATGGATCCCACAAG | + |
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Preference number: 1 (lower is better) Translates to: SRSTTQQKYQSSGNT*HSELTSENRNGSHK Trigger: CTTGTGGGATCCATTCCTGTTTTCAGAAGTTAGCTCTGAATGCCAGGTATTCCCGCTGCTCTGATACTTCTGCTGGGTGGTACTTCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061618.9 ENSMUST00000238190.2 |
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| 3UTR TCA 90 bp | GAAGTATCAGAGCAGCGGGAATACCTGGCATTCAGAGCTAACTTCTaGAAACAGGAATGGATCCCACAAGACTTTGCTTTGGGTCATAAG | + |
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Preference number: 1 (lower is better) Translates to: EVSEQREYLAFRANF*KQEWIPQDFALGHK Trigger: CTTATGACCCAAAGCAAAGTCTTGTGGGATCCATTCCTGTTTTCAGAAGTTAGCTCTGAATGCCAGGTATTCCCGCTGCTCTGATACTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061618.9 ENSMUST00000238190.2 |
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| 3UTR-3UTR CCA 90 bp | ATTGGTTTGGCCAGGGCAGCTTGGGGGATCCGTAGAAGTTCTCGGGTTGCCATGCAGGCGCCGGTGCTGTaGATGAAGGTGAGTTGTGTC | + |
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Preference number: 2 (lower is better) Translates to: IGLARAAWGIRRSSRVAMQAPVL*MKVSCV Trigger: GACACAACTCACCTTCATCCACAGCACCGGCGCCTG...CATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR-3UTR CCA 90 bp | ATTGGTTTGGCCAGGGCAGCTTGGGGGATCCGTAGAAGTTCTCGGGTTGCCATGGTCTGCTCTAAACATTaGGGCCTGAGGTCTGAGGTT | + |
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Preference number: 2 (lower is better) Translates to: IGLARAAWGIRRSSRVAMVCSKH*GLRSEV Trigger: AACCTCAGACCTCAGGCCCCAATGTTTAGAGCAGAC...CATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR-3UTR TCA 90 bp | ACACTGAAGAGCAGAGCCCAAGCTGAGCAGCCACGGCTACATTTGGAGGTTTCTAAAACACTCCATTGGTaGTGGCAGCAGTGCAGGTGG | + |
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Preference number: 2 (lower is better) Translates to: TLKSRAQAEQPRLHLEVSKTLHW*WQQCRW Trigger: CCACCTGCACTGCTGCCATCACCAATGGAGTGTTTT...AGAAACCTCCAAATGTAGCCGTGGCTGCTCAGCTTGGGCTCTGCTCTTCAGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR-3UTR TCA 90 bp | ATTGGTTTGGCCAGGGCAGCTTGGGGGATCCGTAGAAGTTCTCGGGTTGCCATGTTCAGAGCTAACTTCTaGAAACAGGAATGGATCCCA | + |
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Preference number: 2 (lower is better) Translates to: IGLARAAWGIRRSSRVAMFRANF*KQEWIP Trigger: TGGGATCCATTCCTGTTTTCAGAAGTTAGCTCTGAA...CATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR-3UTR CCA 90 bp | ATTGGTTTGGCCAGGGCAGCTTGGGGGATCCGTAGAAGTTCTCGGGTTGCCATGCGGGAAGGAGTCCTTTaGTATACTACAACCTACTTT | + |
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Preference number: 2 (lower is better) Translates to: IGLARAAWGIRRSSRVAMREGVL*YTTTYF Trigger: AAAGTAGGTTGTAGTATACCAAAGGACTCCTTCCCG...CATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR-3UTR TCA 90 bp | TCTATAGCAGGATCTGAACTCTGTAGGTCTTCTCCACGGCTTAGTAGGATTAGGAAAACACTCCATTGGTaGTGGCAGCAGTGCAGGTGG | + |
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Preference number: 2 (lower is better) Translates to: SIAGSELCRSSPRLSRIRKTLHW*WQQCRW Trigger: CCACCTGCACTGCTGCCATCACCAATGGAGTGTTTT...CCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR-3UTR GCA 90 bp | TTCTCTTTAAATATCATAGCCTGTCCCCCGACTACATTCAAAAAGGTGAGAACATTCACACCCAGGCCCTaGTGGCTGCAGTGGATGGGG | + |
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Preference number: 2 (lower is better) Translates to: FSLNIIACPPTTFKKVRTFTPRP*WLQWMG Trigger: CCCCATCCACTGCAGCCAGCAGGGCCTGGGTGTGAA...TGTTCTCACCTTTTTGAATGTAGTCGGGGGACAGGCTATGATATTTAAAGAGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR-3UTR TCA 90 bp | CTGGTTGTAACGGAGGGCTTTACTGTTATACAATACATGTATGTGCAAAACGTTGAGCAGAGCCCAAGCTaGGCAGCCACGGCTACATTT | + |
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Preference number: 2 (lower is better) Translates to: LVVTEGFTVIQYMYVQNVEQSPS*AATATF Trigger: AAATGTAGCCGTGGCTGCTCAGCTTGGGCTCTGCTC...AACGTTTTGCACATACATGTATTGTATAACAGTAAAGCCCTCCGTTACAACCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR-3UTR GCA 90 bp | CAGCTGGTTGTAACGGAGGGCTTTACTGTTATACAATACATGTATGTGCAAAACCCAGGACAGCAGTTCTaGTGCAGGGTAGAGGACACT | + |
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Preference number: 2 (lower is better) Translates to: QLVVTEGFTVIQYMYVQNPGQQF*CRVEDT Trigger: AGTGTCCTCTACCCTGCAGCAGAACTGCTGTCCTGG...GTTTTGCACATACATGTATTGTATAACAGTAAAGCCCTCCGTTACAACCAGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR-3UTR CCA 90 bp | CAGAAGTATCAGAGCAGCGGGAATACCTGGCATTCAGAGCTAACTTCTGAAAACCACAAGACTTTGCTTTaGGTCATAAGCTACCTCCCC | + |
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Preference number: 2 (lower is better) Translates to: QKYQSSGNTWHSELTSENHKTLL*VISYLP Trigger: GGGGAGGTAGCTTATGACCCAAAGCAAAGTCTTGTG...GTTTTCAGAAGTTAGCTCTGAATGCCAGGTATTCCCGCTGCTCTGATACTTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061618.9 ENSMUST00000238190.2 |
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| 3UTR-3UTR CCA 90 bp | GGACCCTCTGGAGATCATACGAATGTTTGTGTAGGGTGTTTATATATTTACCTAAGAGTTGGAGGGCGCTaGTGCACTTGCACTCTGAGG | + |
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Preference number: 2 (lower is better) Translates to: GPSGDHTNVCVGCLYIYLRVGGR*CTCTLR Trigger: CCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCT...TAGGTAAATATATAAACACCCTACACAAACATTCGTATGATCTCCAGAGGGTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR-3UTR TCA 90 bp | ATCACCTCTGTCCACTGGTTATTTTGCGTTGATTCTATAGCAGGATCTGAACTCCTAAACATTGGGGCCTaGGGTCTGAGGTTTTGTAGG | + |
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Preference number: 2 (lower is better) Translates to: ITSVHWLFCVDSIAGSELLNIGA*GLRFCR Trigger: CCTACAAAACCTCAGACCTCAGGCCCCAATGTTTAG...GAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTGGACAGAGGTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR-3UTR GCA 90 bp | TCTGTCCACTGGTTATTTTGCGTTGATTCTATAGCAGGATCTGAACTCTGTAGGGCCTTCCTTTTCAGCTaGTGGTTTCAGGTGGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: SVHWLFCVDSIAGSELCRAFLFS*WFQVEE Trigger: TTCCTCCACCTGAAACCAGCAGCTGAAAAGGAAGGC...CCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTGGACAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR-3UTR TCA 90 bp | TTGAATGCACTTGAGGGACAGACTCTCAAGCACGCTGTAGTCATCACAGGAAAATTCAGAGCTAACTTCTaGAAACAGGAATGGATCCCA | + |
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Preference number: 2 (lower is better) Translates to: LNALEGQTLKHAVVITGKFRANF*KQEWIP Trigger: TGGGATCCATTCCTGTTTTCAGAAGTTAGCTCTGAA...TTTTCCTGTGATGACTACAGCGTGCTTGAGAGTCTGTCCCTCAAGTGCATTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR-3UTR TCA 90 bp | CAGCTGGTTGTAACGGAGGGCTTTACTGTTATACAATACATGTATGTGCAAAACGTCCCTTATCCTGGCTaGCTGCTGAAGGGAAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: QLVVTEGFTVIQYMYVQNVPYPG*LLKGRK Trigger: TTTTCTTCCCTTCAGCAGTCAGCCAGGATAAGGGAC...GTTTTGCACATACATGTATTGTATAACAGTAAAGCCCTCCGTTACAACCAGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR-3UTR GCA 90 bp | CTGAACTCTGTAGGTCTTCTCCACGGCTTAGTAGGATTAGGAGCAGTGACAAGCAGTAAAAGTAGGACATaGAAAAGTGTAACGCAGAAG | + |
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Preference number: 2 (lower is better) Translates to: LNSVGLLHGLVGLGAVTSSKSRT*KSVTQK Trigger: CTTCTGCGTTACACTTTTGCATGTCCTACTTTTACT...GCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR-3UTR CCA 90 bp | GGACCCTCTGGAGATCATACGAATGTTTGTGTAGGGTGTTTATATATTTACCTAGGGACACTGCAGAGCTaGTTTGGAGATATCCTCTCG | + |
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Preference number: 2 (lower is better) Translates to: GPSGDHTNVCVGCLYIYLGTLQS*FGDILS Trigger: CGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCC...TAGGTAAATATATAAACACCCTACACAAACATTCGTATGATCTCCAGAGGGTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR-3UTR CCA 90 bp | CTGGTTGTAACGGAGGGCTTTACTGTTATACAATACATGTATGTGCAAAACGTTAGCCACGGCTACATTTaGAGGTTTCTACCCAAGACA | + |
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Preference number: 2 (lower is better) Translates to: LVVTEGFTVIQYMYVQNVSHGYI*RFLPKT Trigger: TGTCTTGGGTAGAAACCTCCAAATGTAGCCGTGGCT...AACGTTTTGCACATACATGTATTGTATAACAGTAAAGCCCTCCGTTACAACCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR-3UTR CCA 90 bp | CTGGTTGTAACGGAGGGCTTTACTGTTATACAATACATGTATGTGCAAAACGTTGGGAAGAAAAGTGAGTaGAAGGGAAGTGTCCCTAAG | + |
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Preference number: 2 (lower is better) Translates to: LVVTEGFTVIQYMYVQNVGKKSE*KGSVPK Trigger: CTTAGGGACACTTCCCTTCCACTCACTTTTCTTCCC...AACGTTTTGCACATACATGTATTGTATAACAGTAAAGCCCTCCGTTACAACCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR-3UTR CCA 90 bp | TGCTGTTTCTATTATGGTTGTCAGAAACAAAGGAAATACAGGTTAGGAGAAAGACACAAGACTTTGCTTTaGGTCATAAGCTACCTCCCC | + |
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Preference number: 2 (lower is better) Translates to: CCFYYGCQKQRKYRLGERHKTLL*VISYLP Trigger: GGGGAGGTAGCTTATGACCCAAAGCAAAGTCTTGTG...TCTTTCTCCTAACCTGTATTTCCTTTGTTTCTGACAACCATAATAGAAACAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR CAA 90 bp | ATCACAGGAAAAGGCTTAACCGTGTGTGTGCTGTTTCTATTATGGTaGTCAGAAACAAAGGAAATACAGGTTAGGAGAAAGAAAAGTCCT | + |
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Preference number: 2 (lower is better) Translates to: ITGKGLTVCVLFLLW*SETKEIQVRRKKSP Trigger: AGGACTTTTCTTTCTCCTAACCTGTATTTCCTTTGTTTCTGACAACCATAATAGAAACAGCACACACACGGTTAAGCCTTTTCCTGTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR-3UTR GCA 90 bp | TTCTCTTTAAATATCATAGCCTGTCCCCCGACTACATTCAAAAAGGTGAGAACAAGTAAAAGTAGGACATaGAAAAGTGTAACGCAGAAG | + |
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Preference number: 2 (lower is better) Translates to: FSLNIIACPPTTFKKVRTSKSRT*KSVTQK Trigger: CTTCTGCGTTACACTTTTGCATGTCCTACTTTTACT...TGTTCTCACCTTTTTGAATGTAGTCGGGGGACAGGCTATGATATTTAAAGAGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR-3UTR CCA 90 bp | TGCTGTTTCTATTATGGTTGTCAGAAACAAAGGAAATACAGGTTAGGAGAAAGACGGGAAGGAGTCCTTTaGTATACTACAACCTACTTT | + |
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Preference number: 2 (lower is better) Translates to: CCFYYGCQKQRKYRLGERREGVL*YTTTYF Trigger: AAAGTAGGTTGTAGTATACCAAAGGACTCCTTCCCG...TCTTTCTCCTAACCTGTATTTCCTTTGTTTCTGACAACCATAATAGAAACAGCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR-3UTR CAA 90 bp | ATTGGTTTGGCCAGGGCAGCTTGGGGGATCCGTAGAAGTTCTCGGGTTGCCATGCCACAAGACTTTGCTTaGGGTCATAAGCTACCTCCC | + |
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Preference number: 3 (lower is better) Translates to: IGLARAAWGIRRSSRVAMPQDFA*GHKLPP Trigger: GGGAGGTAGCTTATGACCCAAAGCAAAGTCTTGTGG...CATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR CCA 72 bp | GTGCAGGTGGCAGCCAACAGGAGGTACAGGATACTCTaGAGATCTTTTACCGTATCCCCTGAACCAGCTGCA | + |
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Preference number: 3 (lower is better) Translates to: VQVAANRRYRIL*RSFTVSPEPAA Trigger: TGCAGCTGGTTCAGGGGATACGGTAAAAGATCTCCAGAGTATCCTGTACCTCCTGTTGGCTGCCACCTGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR CCA 72 bp | TTTGTAGGGATAGAGATTGGTTTGGCCAGGGCAGCTTaGGGGATCCGTAGAAGTTCTCGGGTTGCCATGAAC | + |
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Preference number: 3 (lower is better) Translates to: FVGIEIGLARAA*GIRRSSRVAMN Trigger: GTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR TCA 72 bp | GCGCACAAAAGCTACACTGCAGAAGCAGGCTCTACGTaGGGCTCATCTTGGGTACTCTTGAATGCACTTGAG | + |
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Preference number: 3 (lower is better) Translates to: AHKSYTAEAGST*GSSWVLLNALE Trigger: CTCAAGTGCATTCAAGAGTACCCAAGATGAGCCTCACGTAGAGCCTGCTTCTGCAGTGTAGCTTTTGTGCGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR CCA 72 bp | AGAGCAGAGCCCAAGCTGAGCAGCCACGGCTACATTTaGAGGTTTCTACCCAAGACACTAAATGAAAATGGG | + |
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Preference number: 3 (lower is better) Translates to: RAEPKLSSHGYI*RFLPKTLNENG Trigger: CCCATTTTCATTTAGTGTCTTGGGTAGAAACCTCCAAATGTAGCCGTGGCTGCTCAGCTTGGGCTCTGCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR-3UTR CAA 90 bp | ATCACCTCTGTCCACTGGTTATTTTGCGTTGATTCTATAGCAGGATCTGAACTCCTTCCGGAGATGATCTaGATGACTGGACTGGTGCCC | + |
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Preference number: 3 (lower is better) Translates to: ITSVHWLFCVDSIAGSELLPEMI*MTGLVP Trigger: GGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAG...GAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTGGACAGAGGTGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR TCA 72 bp | GAGCAGCGGGAATACCTGGCATTCAGAGCTAACTTCTaGAAACAGGAATGGATCCCACAAGACTTTGCTTTG | + |
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Preference number: 3 (lower is better) Translates to: EQREYLAFRANF*KQEWIPQDFAL Trigger: CAAAGCAAAGTCTTGTGGGATCCATTCCTGTTTTCAGAAGTTAGCTCTGAATGCCAGGTATTCCCGCTGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061618.9 ENSMUST00000238190.2 |
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| 3UTR-3UTR CAA 90 bp | CAGCTGGTTGTAACGGAGGGCTTTACTGTTATACAATACATGTATGTGCAAAACCCACAAGACTTTGCTTaGGGTCATAAGCTACCTCCC | + |
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Preference number: 3 (lower is better) Translates to: QLVVTEGFTVIQYMYVQNPQDFA*GHKLPP Trigger: GGGAGGTAGCTTATGACCCAAAGCAAAGTCTTGTGG...GTTTTGCACATACATGTATTGTATAACAGTAAAGCCCTCCGTTACAACCAGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR GCA 72 bp | GTTGCCATGAACATCACCTCTGTCCACTGGTTATTTTaGGTTGATTCTATAGCAGGATCTGAACTCTGTAGG | + |
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Preference number: 3 (lower is better) Translates to: VAMNITSVHWLF*VDSIAGSELCR Trigger: CCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTGGACAGAGGTGATGTTCATGGCAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR CCA 72 bp | AGTTCTCGGGTTGCCATGAACATCACCTCTGTCCACTaGTTATTTTGCGTTGATTCTATAGCAGGATCTGAA | + |
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Preference number: 3 (lower is better) Translates to: SSRVAMNITSVH*LFCVDSIAGSE Trigger: TTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTGGACAGAGGTGATGTTCATGGCAACCCGAGAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| 3UTR-3UTR CAA 90 bp | CTAACTTCTGAAAACAGGAATGGATCCCACAAGACTTTGCTTTGGGTCATAAGCATTAAAAACACTCCATaGGTGATGGCAGCAGTGCAG | + |
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Preference number: 3 (lower is better) Translates to: LTSENRNGSHKTLLWVISIKNTP*VMAAVQ Trigger: CTGCACTGCTGCCATCACCAATGGAGTGTTTTTAAT...GCTTATGACCCAAAGCAAAGTCTTGTGGGATCCATTCCTGTTTTCAGAAGTTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061618.9 ENSMUST00000238190.2 |
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| 3UTR-3UTR CAA 90 bp | GGACCCTCTGGAGATCATACGAATGTTTGTGTAGGGTGTTTATATATTTACCTAGGATCCCACAAGACTTaGCTTTGGGTCATAAGCTAC | + |
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Preference number: 3 (lower is better) Translates to: GPSGDHTNVCVGCLYIYLGSHKT*LWVISY Trigger: GTAGCTTATGACCCAAAGCAAAGTCTTGTGGGATCC...TAGGTAAATATATAAACACCCTACACAAACATTCGTATGATCTCCAGAGGGTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061618.9 ENSMUST00000238190.2 |
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| 3UTR-3UTR CAA 90 bp | TTCTCTTTAAATATCATAGCCTGTCCCCCGACTACATTCAAAAAGGTGAGAACATCATCTTGGGTACTCTaGAATGCACTTGAGGGACAG | + |
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Preference number: 3 (lower is better) Translates to: FSLNIIACPPTTFKKVRTSSWVL*NALEGQ Trigger: CTGTCCCTCAAGTGCATTCAAGAGTACCCAAGATGA...TGTTCTCACCTTTTTGAATGTAGTCGGGGGACAGGCTATGATATTTAAAGAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR-3UTR CAA 90 bp | GGACCCTCTGGAGATCATACGAATGTTTGTGTAGGGTGTTTATATATTTACCTAATTAAAAACACTCCATaGGTGATGGCAGCAGTGCAG | + |
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Preference number: 3 (lower is better) Translates to: GPSGDHTNVCVGCLYIYLIKNTP*VMAAVQ Trigger: CTGCACTGCTGCCATCACCAATGGAGTGTTTTTAAT...TAGGTAAATATATAAACACCCTACACAAACATTCGTATGATCTCCAGAGGGTCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061618.9 ENSMUST00000238190.2 |
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| CDS-3UTR TCA 90 bp | ATTGGTTTGGCCAGGGCAGCTTGGGGGATCCGTAGAAGTTCTCGGGTTGCCATGACAGGCTCTGTTGGTTaGAGCTGGGAACAGCCATCT | + |
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Preference number: 4 (lower is better) Translates to: IGLARAAWGIRRSSRVAMTGSVG*SWEQPS Trigger: AGATGGCTGTTCCCAGCTTCAACCAACAGAGCCTGT...CATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| CDS-3UTR TCA 90 bp | CTCCCCTCCCTCATTAAAAACACTCCATTGGTGATGGCAGCAGTGCAGGTGGCACTAAACATTGGGGCCTaGGGTCTGAGGTTTTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: LPSLIKNTPLVMAAVQVALNIGA*GLRFCR Trigger: CCTACAAAACCTCAGACCTCAGGCCCCAATGTTTAG...TGCCACCTGCACTGCTGCCATCACCAATGGAGTGTTTTTAATGAGGGAGGGGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR CCA 90 bp | CTGAACTCTGTAGGTCTTCTCCACGGCTTAGTAGGATTAGGAGCAGTGACAAGCCTGCACAGGCTCTGTTaGTTGAAGCTGGGAACAGCC | + |
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Preference number: 4 (lower is better) Translates to: LNSVGLLHGLVGLGAVTSLHRLC*LKLGTA Trigger: GGCTGTTCCCAGCTTCAACCAACAGAGCCTGTGCAG...GCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| CDS-3UTR CCA 90 bp | CAGAGCAGCGGGAATACCTGGCATTCAGAGCTAACTTCTGAAAACAGGAATGGAGGACACAGGATCTGTTaGTTGAAGCTGGGAACAGCC | + |
|
Preference number: 4 (lower is better) Translates to: QSSGNTWHSELTSENRNGGHRIC*LKLGTA Trigger: GGCTGTTCCCAGCTTCAACCAACAGATCCTGTGTCC...TCCATTCCTGTTTTCAGAAGTTAGCTCTGAATGCCAGGTATTCCCGCTGCTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR CCA 90 bp | TTGAATGCACTTGAGGGACAGACTCTCAAGCACGCTGTAGTCATCACAGGAAAATTGGCCAGGGCAGCTTaGGGGATCCGTAGAAGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LNALEGQTLKHAVVITGKLARAA*GIRRSS Trigger: AGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAA...TTTTCCTGTGATGACTACAGCGTGCTTGAGAGTCTGTCCCTCAAGTGCATTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR GCA 90 bp | TTGAATGCACTTGAGGGACAGACTCTCAAGCACGCTGTAGTCATCACAGGAAAACCAGGTAGGGATCAGTaGTCTGCAGCTGCATCATCT | + |
|
Preference number: 4 (lower is better) Translates to: LNALEGQTLKHAVVITGKPGRDQ*SAAASS Trigger: AGATGATGCAGCTGCAGAGCACTGATCCCTACCTGG...TTTTCCTGTGATGACTACAGCGTGCTTGAGAGTCTGTCCCTCAAGTGCATTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR CCA 90 bp | CAGAAGTATCAGAGCAGCGGGAATACCTGGCATTCAGAGCTAACTTCTGAAAACGGGACACTGCAGAGCTaGTTTGGAGATATCCTCTCG | + |
|
Preference number: 4 (lower is better) Translates to: QKYQSSGNTWHSELTSENGTLQS*FGDILS Trigger: CGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCC...GTTTTCAGAAGTTAGCTCTGAATGCCAGGTATTCCCGCTGCTCTGATACTTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR CAA 72 bp | AAAAGGGACACTAGATTTGTAGGGATAGAGATTGGTTaGGCCAGGGCAGCTTGGGGGATCCGTAGAAGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: KRDTRFVGIEIG*ARAAWGIRRSS Trigger: AGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| CDS-3UTR TCA 90 bp | CAGAAGTATCAGAGCAGCGGGAATACCTGGCATTCAGAGCTAACTTCTGAAAACTTGAGATTCCGATGCTaGTTTCTGCTCTGCAGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: QKYQSSGNTWHSELTSENLRFRC*FLLCSC Trigger: GCAGCTGCAGAGCAGAAATCAGCATCGGAATCTCAA...GTTTTCAGAAGTTAGCTCTGAATGCCAGGTATTCCCGCTGCTCTGATACTTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR GCA 90 bp | CTCCCCTCCCTCATTAAAAACACTCCATTGGTGATGGCAGCAGTGCAGGTGGCAGTCCACTGGTTATTTTaGGTTGATTCTATAGCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: LPSLIKNTPLVMAAVQVAVHWLF*VDSIAG Trigger: TCCTGCTATAGAATCAACGCAAAATAACCAGTGGAC...TGCCACCTGCACTGCTGCCATCACCAATGGAGTGTTTTTAATGAGGGAGGGGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR CCA 90 bp | CAGAAGTATCAGAGCAGCGGGAATACCTGGCATTCAGAGCTAACTTCTGAAAACGTCTGCTCTAAACATTaGGGCCTGAGGTCTGAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: QKYQSSGNTWHSELTSENVCSKH*GLRSEV Trigger: AACCTCAGACCTCAGGCCCCAATGTTTAGAGCAGAC...GTTTTCAGAAGTTAGCTCTGAATGCCAGGTATTCCCGCTGCTCTGATACTTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR CCA 90 bp | TTCTCTTTAAATATCATAGCCTGTCCCCCGACTACATTCAAAAAGGTGAGAACAAGAGTTGGAGGGCGCTaGTGCACTTGCACTCTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: FSLNIIACPPTTFKKVRTRVGGR*CTCTLR Trigger: CCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCT...TGTTCTCACCTTTTTGAATGTAGTCGGGGGACAGGCTATGATATTTAAAGAGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR TCA 90 bp | CTGGTTGTAACGGAGGGCTTTACTGTTATACAATACATGTATGTGCAAAACGTTTTGGGGCCTGAGGTCTaGGGTTTTGTAGGTGAGGTC | + |
|
Preference number: 4 (lower is better) Translates to: LVVTEGFTVIQYMYVQNVLGPEV*GFVGEV Trigger: GACCTCACCTACAAAACCTCAGACCTCAGGCCCCAA...AACGTTTTGCACATACATGTATTGTATAACAGTAAAGCCCTCCGTTACAACCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR TCA 90 bp | CTAACTTCTGAAAACAGGAATGGATCCCACAAGACTTTGCTTTGGGTCATAAGCGTTGCAGAAGGCTGGTaGCAGTCACTGAAGGAAGAT | + |
|
Preference number: 4 (lower is better) Translates to: LTSENRNGSHKTLLWVISVAEGW*QSLKED Trigger: ATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAAC...GCTTATGACCCAAAGCAAAGTCTTGTGGGATCCATTCCTGTTTTCAGAAGTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR CCA 90 bp | AAACAAACTTATTCTTTAAGGACCCTCTGGAGATCATACGAATGTTTGTGTAGGCAGGCGCCGGTGCTGTaGATGAAGGTGAGTTGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: KQTYSLRTLWRSYECLCRQAPVL*MKVSCV Trigger: GACACAACTCACCTTCATCCACAGCACCGGCGCCTG...CCTACACAAACATTCGTATGATCTCCAGAGGGTCCTTAAAGAATAAGTTTGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR CCA 90 bp | CTAACTTCTGAAAACAGGAATGGATCCCACAAGACTTTGCTTTGGGTCATAAGCTGTAGGGATAGAGATTaGTTTGGCCAGGGCAGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: LTSENRNGSHKTLLWVISCRDRD*FGQGSL Trigger: CAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACA...GCTTATGACCCAAAGCAAAGTCTTGTGGGATCCATTCCTGTTTTCAGAAGTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| 3UTR CAA 72 bp | CTAACTTCTGAAAACAGGAATGGATCCCACAAGACTTaGCTTTGGGTCATAAGCTACCTCCCCTCCCTCATT | + |
|
Preference number: 4 (lower is better) Translates to: LTSENRNGSHKT*LWVISYLPSLI Trigger: AATGAGGGAGGGGAGGTAGCTTATGACCCAAAGCAAAGTCTTGTGGGATCCATTCCTGTTTTCAGAAGTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061618.9 ENSMUST00000238190.2 |
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| CDS-3UTR GCA 90 bp | CAGCTGGTTGTAACGGAGGGCTTTACTGTTATACAATACATGTATGTGCAAAACAGGAGTTCGGGACACTaGAGAGCTGGTTTGGAGATA | + |
|
Preference number: 4 (lower is better) Translates to: QLVVTEGFTVIQYMYVQNRSSGH*RAGLEI Trigger: TATCTCCAAACCAGCTCTGCAGTGTCCCGAACTCCT...GTTTTGCACATACATGTATTGTATAACAGTAAAGCCCTCCGTTACAACCAGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR TCA 90 bp | CAGCTGGTTGTAACGGAGGGCTTTACTGTTATACAATACATGTATGTGCAAAACTCTTCTCCCAGGCCTTaGAATGCATCTTCATCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: QLVVTEGFTVIQYMYVQNSSPRP*NASSSS Trigger: TGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGA...GTTTTGCACATACATGTATTGTATAACAGTAAAGCCCTCCGTTACAACCAGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR CCA 90 bp | GGACCCTCTGGAGATCATACGAATGTTTGTGTAGGGTGTTTATATATTTACCTAACTGCAGAGCTGGTTTaGAGATATCCTCTCGCCATA | + |
|
Preference number: 4 (lower is better) Translates to: GPSGDHTNVCVGCLYIYLTAELV*RYPLAI Trigger: TATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGT...TAGGTAAATATATAAACACCCTACACAAACATTCGTATGATCTCCAGAGGGTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR CCA 90 bp | CTAACTTCTGAAAACAGGAATGGATCCCACAAGACTTTGCTTTGGGTCATAAGCATCACCTCTGTCCACTaGTTATTTTGCGTTGATTCT | + |
|
Preference number: 4 (lower is better) Translates to: LTSENRNGSHKTLLWVISITSVH*LFCVDS Trigger: AGAATCAACGCAAAATAACCAGTGGACAGAGGTGAT...GCTTATGACCCAAAGCAAAGTCTTGTGGGATCCATTCCTGTTTTCAGAAGTTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR TCA 90 bp | AAACAAACTTATTCTTTAAGGACCCTCTGGAGATCATACGAATGTTTGTGTAGGTCTTCTCCCAGGCCTTaGAATGCATCTTCATCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: KQTYSLRTLWRSYECLCRSSPRP*NASSSS Trigger: TGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGA...CCTACACAAACATTCGTATGATCTCCAGAGGGTCCTTAAAGAATAAGTTTGTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061618.9 ENSMUST00000238190.2 |
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| CDS-3UTR GCA 90 bp | TTCTCTTTAAATATCATAGCCTGTCCCCCGACTACATTCAAAAAGGTGAGAACATCAGTGCTCTGCAGCTaGATCATCTGTATTTTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: FSLNIIACPPTTFKKVRTSVLCS*IICILE Trigger: CTCTAAAATACAGATGATGCAGCTGCAGAGCACTGA...TGTTCTCACCTTTTTGAATGTAGTCGGGGGACAGGCTATGATATTTAAAGAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR GCA 90 bp | CTGGTTGTAACGGAGGGCTTTACTGTTATACAATACATGTATGTGCAAAACGTTATGCTACATATTTTGTaGTTTCTTTCATCCATCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LVVTEGFTVIQYMYVQNVMLHIL*FLSSIR Trigger: CCTGATGGATGAAAGAAAGCACAAAATATGTAGCAT...AACGTTTTGCACATACATGTATTGTATAACAGTAAAGCCCTCCGTTACAACCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR CAA 90 bp | CTCCCCTCCCTCATTAAAAACACTCCATTGGTGATGGCAGCAGTGCAGGTGGCACACAGGCTCTGTTGGTaGAAGCTGGGAACAGCCATC | + |
|
Preference number: 5 (lower is better) Translates to: LPSLIKNTPLVMAAVQVAHRLCW*KLGTAI Trigger: GATGGCTGTTCCCAGCTTCAACCAACAGAGCCTGTG...TGCCACCTGCACTGCTGCCATCACCAATGGAGTGTTTTTAATGAGGGAGGGGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| CDS-3UTR CAA 90 bp | CTCCCCTCCCTCATTAAAAACACTCCATTGGTGATGGCAGCAGTGCAGGTGGCAACTGCACAGGCTCTGTaGGTTGAAGCTGGGAACAGC | + |
|
Preference number: 5 (lower is better) Translates to: LPSLIKNTPLVMAAVQVATAQAL*VEAGNS Trigger: GCTGTTCCCAGCTTCAACCAACAGAGCCTGTGCAGT...TGCCACCTGCACTGCTGCCATCACCAATGGAGTGTTTTTAATGAGGGAGGGGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| CDS-3UTR CAA 90 bp | TTGGCCAGGGCAGCTTGGGGGATCCGTAGAAGTTCTCGGGTTGCCATGAACATCTTCTTCTCCCAGGCCTaGAAATGCATCTTCATCTTC | + |
|
Preference number: 5 (lower is better) Translates to: LARAAWGIRRSSRVAMNIFFSQA*KCIFIF Trigger: GAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAA...GATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| CDS-3UTR CAA 90 bp | ACACTGAAGAGCAGAGCCCAAGCTGAGCAGCCACGGCTACATTTGGAGGTTTCTGAACCAGCTGCAGTTTaGTTTCCAGCAAGTTCAGTT | + |
|
Preference number: 5 (lower is better) Translates to: TLKSRAQAEQPRLHLEVSEPAAV*FPASSV Trigger: AACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTC...AGAAACCTCCAAATGTAGCCGTGGCTGCTCAGCTTGGGCTCTGCTCTTCAGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR CAA 90 bp | CAGCTGGTTGTAACGGAGGGCTTTACTGTTATACAATACATGTATGTGCAAAACCTTCCGGAGATGATCTaGATGACTGGACTGGTGCCC | + |
|
Preference number: 5 (lower is better) Translates to: QLVVTEGFTVIQYMYVQNLPEMI*MTGLVP Trigger: GGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAG...GTTTTGCACATACATGTATTGTATAACAGTAAAGCCCTCCGTTACAACCAGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR CAA 90 bp | GTGTGCTGTTTCTATTATGGTTGTCAGAAACAAAGGAAATACAGGTTAGGAGAAGGGATAGAGATTGGTTaGGCCAGGGCAGCTTGGGGG | + |
|
Preference number: 5 (lower is better) Translates to: VCCFYYGCQKQRKYRLGEGIEIG*ARAAWG Trigger: CCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCC...TTCTCCTAACCTGTATTTCCTTTGTTTCTGACAACCATAATAGAAACAGCACAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR CAA 90 bp | ATCACCTCTGTCCACTGGTTATTTTGCGTTGATTCTATAGCAGGATCTGAACTCGTGATGTTGACCGCCTaGGTAAAGCTCGCTCAGAAA | + |
|
Preference number: 5 (lower is better) Translates to: ITSVHWLFCVDSIAGSELVMLTA*VKLAQK Trigger: TTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCAC...GAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTGGACAGAGGTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238190.2 |
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| CDS-3UTR CAA 90 bp | AAACAAACTTATTCTTTAAGGACCCTCTGGAGATCATACGAATGTTTGTGTAGGAGGGCGCTGGTGCACTaGCACTCTGAGGTAGGTTCA | + |
|
Preference number: 5 (lower is better) Translates to: KQTYSLRTLWRSYECLCRRALVH*HSEVGS Trigger: TGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCT...CCTACACAAACATTCGTATGATCTCCAGAGGGTCCTTAAAGAATAAGTTTGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR CAA 90 bp | GTGTGCTGTTTCTATTATGGTTGTCAGAAACAAAGGAAATACAGGTTAGGAGAACACTGCAGAGCTGGTTaGGAGATATCCTCTCGCCAT | + |
|
Preference number: 5 (lower is better) Translates to: VCCFYYGCQKQRKYRLGEHCRAG*EISSRH Trigger: ATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTG...TTCTCCTAACCTGTATTTCCTTTGTTTCTGACAACCATAATAGAAACAGCACAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR CAA 90 bp | CAGCTGGTTGTAACGGAGGGCTTTACTGTTATACAATACATGTATGTGCAAAACTTCTTCTCCCAGGCCTaGAAATGCATCTTCATCTTC | + |
|
Preference number: 5 (lower is better) Translates to: QLVVTEGFTVIQYMYVQNFFSQA*KCIFIF Trigger: GAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAA...GTTTTGCACATACATGTATTGTATAACAGTAAAGCCCTCCGTTACAACCAGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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| CDS-3UTR CAA 90 bp | AAACAAACTTATTCTTTAAGGACCCTCTGGAGATCATACGAATGTTTGTGTAGGGTGATGTTGACCGCCTaGGTAAAGCTCGCTCAGAAA | + |
|
Preference number: 5 (lower is better) Translates to: KQTYSLRTLWRSYECLCRVMLTA*VKLAQK Trigger: TTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCAC...CCTACACAAACATTCGTATGATCTCCAGAGGGTCCTTAAAGAATAAGTTTGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061618.9 ENSMUST00000238190.2 |
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| CDS-3UTR CAA 90 bp | AAACAAACTTATTCTTTAAGGACCCTCTGGAGATCATACGAATGTTTGTGTAGGAGTGACAAGCCAAACTaGTTCTGGAGCACAGCAGTG | + |
|
Preference number: 5 (lower is better) Translates to: KQTYSLRTLWRSYECLCRSDKPN*FWSTAV Trigger: CACTGCTGTGCTCCAGAACAAGTTTGGCTTGTCACT...CCTACACAAACATTCGTATGATCTCCAGAGGGTCCTTAAAGAATAAGTTTGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061618.9 |
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