Pregenerated sensors for PATE9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074448Ensembl transcript IDs: ENSMUST00000098900.3
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCAGAGTACAAGCAGGTATCAGAGCATGGGCAGTGCTGGAATAGATaGTGCAGTGTTGTGAGGGCACAGGAGGAGGATGAAGGGCTCAGA | + |
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Preference number: 1 (lower is better) Translates to: AEYKQVSEHGQCWNR*CSVVRAQEEDEGLR Trigger: TCTGAGCCCTTCATCCTCCTCCTGTGCCCTCACAACACTGCACCATCTATTCCAGCACTGCCCATGCTCTGATACCTGCTTGTACTCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR GCA 90 bp | GAGTACAAGCAGGTATCAGAGCATGGGCAGTGCTGGAATAGATGGTaGAGTGTTGTGAGGGCACAGGAGGAGGATGAAGGGCTCAGAACT | + |
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Preference number: 1 (lower is better) Translates to: EYKQVSEHGQCWNRW*SVVRAQEEDEGLRT Trigger: AGTTCTGAGCCCTTCATCCTCCTCCTGTGCCCTCACAACACTGCACCATCTATTCCAGCACTGCCCATGCTCTGATACCTGCTTGTACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR GCA 90 bp | TCTAGCCTCAGACTCATAGAAATCCTCCTGCCTTTGCCTCTCAAGTaGTGGGGTTTAAGGCATATGCCACCTCACCTAGGTGTCCCTTAT | + |
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Preference number: 1 (lower is better) Translates to: SSLRLIEILLPLPLK*WGLRHMPPHLGVPY Trigger: ATAAGGGACACCTAGGTGAGGTGGCATATGCCTTAAACCCCAGCACTTGAGAGGCAAAGGCAGGAGGATTTCTATGAGTCTGAGGCTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR CCA 90 bp | CCTCACTTCCAAATTTCACCATCTCAGGGACTAAACTTGAACATATaGATCTCTGGTAACTCACACATCCAGTCCATAGGAGAAGCTGGT | + |
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Preference number: 1 (lower is better) Translates to: PHFQISPSQGLNLNI*ISGNSHIQSIGEAG Trigger: ACCAGCTTCTCCTATGGACTGGATGTGTGAGTTACCAGAGATCCATATGTTCAAGTTTAGTCCCTGAGATGGTGAAATTTGGAAGTGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR-3UTR TCA 90 bp | GTAGAACAATCTAGCCTCAGACTCATAGAAATCCTCCTGCCTTTGCCTCTCAAGGGCACAGGAGGAGGATaGAGGGCTCAGAACTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: VEQSSLRLIEILLPLPLKGTGGG*RAQNCP Trigger: AGGACAGTTCTGAGCCCTTCATCCTCCTCCTGTGCC...CTTGAGAGGCAAAGGCAGGAGGATTTCTATGAGTCTGAGGCTAGATTGTTCTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR-3UTR CCA 90 bp | GTGTCCCTTATGTTGTTCTACTCAGGCCACAGCAGTGCAAAACTCCCTGACACACAGTGCTGGAATAGATaGTGCAGTGTTGTGAGGGCA | + |
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Preference number: 2 (lower is better) Translates to: VSLMLFYSGHSSAKLPDTQCWNR*CSVVRA Trigger: TGCCCTCACAACACTGCACCATCTATTCCAGCACTG...TGTGTCAGGGAGTTTTGCACTGCTGTGGCCTGAGTAGAACAACATAAGGGACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR-3UTR TCA 90 bp | CCCTCCAAACTTTCCCTTATATCTCCCTTGCTTCTTTTCAAATTCATGGCCTCTAAGAGGGAGAAGCACTaGGGGTTGTGGGGACCACAG | + |
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Preference number: 2 (lower is better) Translates to: PSKLSLISPLLLFKFMASKREKH*GLWGPQ Trigger: CTGTGGTCCCCACAACCCTCAGTGCTTCTCCCTCTT...AGAGGCCATGAATTTGAAAAGAAGCAAGGGAGATATAAGGGAAAGTTTGGAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR-3UTR GCA 90 bp | ACAAGTCAGTATGAGCAGCAGAAGAGTGTGCAATCTGTCAGTCCTGGAAGACTAAATAGCCACACCTGGTaGAGAGTACAAGCAGGTATC | + |
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Preference number: 2 (lower is better) Translates to: TSQYEQQKSVQSVSPGRLNSHTW*RVQAGI Trigger: GATACCTGCTTGTACTCTGCACCAGGTGTGGCTATT...TAGTCTTCCAGGACTGACAGATTGCACACTCTTCTGCTGCTCATACTGACTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR-3UTR CCA 90 bp | TTCTACTCAGGCCACAGCAGTGCAAAACTCCCTGACACACACATGAAATTCTATGAGCATGGGCAGTGCTaGAATAGATGGTGCAGTGTT | + |
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Preference number: 2 (lower is better) Translates to: FYSGHSSAKLPDTHMKFYEHGQC*NRWCSV Trigger: AACACTGCACCATCTATTCCAGCACTGCCCATGCTC...ATAGAATTTCATGTGTGTGTCAGGGAGTTTTGCACTGCTGTGGCCTGAGTAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR-3UTR GCA 90 bp | CCCTCCAAACTTTCCCTTATATCTCCCTTGCTTCTTTTCAAATTCATGGCCTCTTCAGAGCATGGGCAGTaGTGGAATAGATGGTGCAGT | + |
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Preference number: 2 (lower is better) Translates to: PSKLSLISPLLLFKFMASSEHGQ*WNRWCS Trigger: ACTGCACCATCTATTCCAGCACTGCCCATGCTCTGA...AGAGGCCATGAATTTGAAAAGAAGCAAGGGAGATATAAGGGAAAGTTTGGAGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR-3UTR CCA 90 bp | GTAGAACAATCTAGCCTCAGACTCATAGAAATCCTCCTGCCTTTGCCTCTCAAGGCTCAGAACTGTCCTTaGAACATGTCAAGATGGTTT | + |
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Preference number: 2 (lower is better) Translates to: VEQSSLRLIEILLPLPLKAQNCP*NMSRWF Trigger: AAACCATCTTGACATGTTCCAAGGACAGTTCTGAGC...CTTGAGAGGCAAAGGCAGGAGGATTTCTATGAGTCTGAGGCTAGATTGTTCTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR CAA 90 bp | TCCCAAAAGCCTCACTTCCAAATTTCACCATCTCAGGGACTAAACTaGAACATATGGATCTCTGGTAACTCACACATCCAGTCCATAGGA | + |
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Preference number: 2 (lower is better) Translates to: SQKPHFQISPSQGLN*NIWISGNSHIQSIG Trigger: TCCTATGGACTGGATGTGTGAGTTACCAGAGATCCATATGTTCAAGTTTAGTCCCTGAGATGGTGAAATTTGGAAGTGAGGCTTTTGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR-3UTR GCA 90 bp | GTAGAACAATCTAGCCTCAGACTCATAGAAATCCTCCTGCCTTTGCCTCTCAAGAACCGAATAGAAAAATaGATCACTGAACTGGTCATC | + |
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Preference number: 2 (lower is better) Translates to: VEQSSLRLIEILLPLPLKNRIEK*ITELVI Trigger: GATGACCAGTTCAGTGATGCATTTTTCTATTCGGTT...CTTGAGAGGCAAAGGCAGGAGGATTTCTATGAGTCTGAGGCTAGATTGTTCTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR-3UTR CCA 90 bp | ACATGGATGTGGACACTTGGCCTTTATAATTATGAGAAGAAAGGAGTTTCAAACTTGCCTCTCAAGTGCTaGGGTTTAAGGCATATGCCA | + |
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Preference number: 2 (lower is better) Translates to: TWMWTLGLYNYEKKGVSNLPLKC*GLRHMP Trigger: TGGCATATGCCTTAAACCCCAGCACTTGAGAGGCAA...GTTTGAAACTCCTTTCTTCTCATAATTATAAAGGCCAAGTGTCCACATCCATGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR-3UTR CCA 90 bp | CCCTCCAAACTTTCCCTTATATCTCCCTTGCTTCTTTTCAAATTCATGGCCTCTAATGTCTGTTGCTCTTaGAAAGGCAATGTTGAGCAT | + |
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Preference number: 2 (lower is better) Translates to: PSKLSLISPLLLFKFMASNVCCS*KGNVEH Trigger: ATGCTCAACATTGCCTTTCCAAGAGCAACAGACATT...AGAGGCCATGAATTTGAAAAGAAGCAAGGGAGATATAAGGGAAAGTTTGGAGGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR-3UTR CCA 90 bp | CCCTCCAAACTTTCCCTTATATCTCCCTTGCTTCTTTTCAAATTCATGGCCTCTCTAAACTTGAACATATaGATCTCTGGTAACTCACAC | + |
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Preference number: 2 (lower is better) Translates to: PSKLSLISPLLLFKFMASLNLNI*ISGNSH Trigger: GTGTGAGTTACCAGAGATCCATATGTTCAAGTTTAG...AGAGGCCATGAATTTGAAAAGAAGCAAGGGAGATATAAGGGAAAGTTTGGAGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR GCA 72 bp | CAGGTATCAGAGCATGGGCAGTGCTGGAATAGATGGTaGAGTGTTGTGAGGGCACAGGAGGAGGATGAAGGG | + |
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Preference number: 3 (lower is better) Translates to: QVSEHGQCWNRW*SVVRAQEEDEG Trigger: CCCTTCATCCTCCTCCTGTGCCCTCACAACACTGCACCATCTATTCCAGCACTGCCCATGCTCTGATACCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR CCA 72 bp | AAGCAGGTATCAGAGCATGGGCAGTGCTGGAATAGATaGTGCAGTGTTGTGAGGGCACAGGAGGAGGATGAA | + |
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Preference number: 3 (lower is better) Translates to: KQVSEHGQCWNR*CSVVRAQEEDE Trigger: TTCATCCTCCTCCTGTGCCCTCACAACACTGCACCATCTATTCCAGCACTGCCCATGCTCTGATACCTGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR GCA 72 bp | CTAGTAGGACACAGGTGCTCTGAAGGGGAAAATGTGTaGACATGTGTGCATGTGCGTGCATGTGTGAGTGTG | + |
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Preference number: 3 (lower is better) Translates to: LVGHRCSEGENV*TCVHVRACVSV Trigger: CACACTCACACATGCACGCACATGCACACATGTGCACACATTTTCCCCTTCAGAGCACCTGTGTCCTACTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR-3UTR CAA 90 bp | ACAAGTCAGTATGAGCAGCAGAAGAGTGTGCAATCTGTCAGTCCTGGAAGACTAGGCTCAGAACTGTCCTaGGAACATGTCAAGATGGTT | + |
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Preference number: 3 (lower is better) Translates to: TSQYEQQKSVQSVSPGRLGSELS*EHVKMV Trigger: AACCATCTTGACATGTTCCAAGGACAGTTCTGAGCC...TAGTCTTCCAGGACTGACAGATTGCACACTCTTCTGCTGCTCATACTGACTTGT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR-3UTR CAA 90 bp | TTCTACTCAGGCCACAGCAGTGCAAAACTCCCTGACACACACATGAAATTCTATAAGATGCTAGAGCTATaGTTTGATGGCCAACCGAAT | + |
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Preference number: 3 (lower is better) Translates to: FYSGHSSAKLPDTHMKFYKMLEL*FDGQPN Trigger: ATTCGGTTGGCCATCAAACAATAGCTCTAGCATCTT...ATAGAATTTCATGTGTGTGTCAGGGAGTTTTGCACTGCTGTGGCCTGAGTAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR CCA 72 bp | CAAATTTCACCATCTCAGGGACTAAACTTGAACATATaGATCTCTGGTAACTCACACATCCAGTCCATAGGA | + |
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Preference number: 3 (lower is better) Translates to: QISPSQGLNLNI*ISGNSHIQSIG Trigger: TCCTATGGACTGGATGTGTGAGTTACCAGAGATCCATATGTTCAAGTTTAGTCCCTGAGATGGTGAAATTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR-3UTR CAA 90 bp | ACATGGATGTGGACACTTGGCCTTTATAATTATGAGAAGAAAGGAGTTTCAAACTCTCAGGGACTAAACTaGAACATATGGATCTCTGGT | + |
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Preference number: 3 (lower is better) Translates to: TWMWTLGLYNYEKKGVSNSQGLN*NIWISG Trigger: ACCAGAGATCCATATGTTCAAGTTTAGTCCCTGAGA...GTTTGAAACTCCTTTCTTCTCATAATTATAAAGGCCAAGTGTCCACATCCATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| 3UTR-3UTR CAA 90 bp | ACATGGATGTGGACACTTGGCCTTTATAATTATGAGAAGAAAGGAGTTTCAAACAAAAATCAATGTCTGTaGCTCTTGGAAAGGCAATGT | + |
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Preference number: 3 (lower is better) Translates to: TWMWTLGLYNYEKKGVSNKNQCL*LLERQC Trigger: ACATTGCCTTTCCAAGAGCAACAGACATTGATTTTT...GTTTGAAACTCCTTTCTTCTCATAATTATAAAGGCCAAGTGTCCACATCCATGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| CDS-3UTR CCA 90 bp | GTGTCCCTTATGTTGTTCTACTCAGGCCACAGCAGTGCAAAACTCCCTGACACATTGAACAAAGTGCACTaGAAGCATTTCAGAGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: VSLMLFYSGHSSAKLPDTLNKVH*KHFRAS Trigger: GGAGGCTCTGAAATGCTTCCAGTGCACTTTGTTCAA...TGTGTCAGGGAGTTTTGCACTGCTGTGGCCTGAGTAGAACAACATAAGGGACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| CDS-3UTR GCA 90 bp | TTCTACTCAGGCCACAGCAGTGCAAAACTCCCTGACACACACATGAAATTCTATGCCACCTTCAAACTTTaGCCACAAGACACATACTTC | + |
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Preference number: 4 (lower is better) Translates to: FYSGHSSAKLPDTHMKFYATFKL*PQDTYF Trigger: GAAGTATGTGTCTTGTGGGCAAAGTTTGAAGGTGGC...ATAGAATTTCATGTGTGTGTCAGGGAGTTTTGCACTGCTGTGGCCTGAGTAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| CDS-3UTR TCA 90 bp | ACATGGATGTGGACACTTGGCCTTTATAATTATGAGAAGAAAGGAGTTTCAAACCCTGGAACCCATACATaGACCTGCCACCTTCAAACT | + |
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Preference number: 4 (lower is better) Translates to: TWMWTLGLYNYEKKGVSNPGTHT*TCHLQT Trigger: AGTTTGAAGGTGGCAGGTTCATGTATGGGTTCCAGG...GTTTGAAACTCCTTTCTTCTCATAATTATAAAGGCCAAGTGTCCACATCCATGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| CDS-3UTR CAA 90 bp | GTGTCCCTTATGTTGTTCTACTCAGGCCACAGCAGTGCAAAACTCCCTGACACATGCCACCTTCAAACTTaGCCCACAAGACACATACTT | + |
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Preference number: 5 (lower is better) Translates to: VSLMLFYSGHSSAKLPDTCHLQT*PTRHIL Trigger: AAGTATGTGTCTTGTGGGCAAAGTTTGAAGGTGGCA...TGTGTCAGGGAGTTTTGCACTGCTGTGGCCTGAGTAGAACAACATAAGGGACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| CDS-3UTR CAA 90 bp | TTCTACTCAGGCCACAGCAGTGCAAAACTCCCTGACACACACATGAAATTCTATCATTTCCCCTTAGAGTaGAACAAAGTGCACTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: FYSGHSSAKLPDTHMKFYHFPLE*NKVHWK Trigger: CTTCCAGTGCACTTTGTTCAACTCTAAGGGGAAATG...ATAGAATTTCATGTGTGTGTCAGGGAGTTTTGCACTGCTGTGGCCTGAGTAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| CDS-3UTR CAA 90 bp | TTCTACTCAGGCCACAGCAGTGCAAAACTCCCTGACACACACATGAAATTCTATTCTCAAGTTCAGTGTTaGATTAACACAAGTGTGAGA | + |
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Preference number: 5 (lower is better) Translates to: FYSGHSSAKLPDTHMKFYSQVQC*INTSVR Trigger: TCTCACACTTGTGTTAATCAAACACTGAACTTGAGA...ATAGAATTTCATGTGTGTGTCAGGGAGTTTTGCACTGCTGTGGCCTGAGTAGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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| CDS GCA 72 bp | CTGGAACCCATACATGAACCTGCCACCTTCAAACTTTaGCCACAAGACACATACTTCATTATTTTGGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: LEPIHEPATFKL*PQDTYFIILGL Trigger: GAGACCCAAAATAATGAAGTATGTGTCTTGTGGGCAAAGTTTGAAGGTGGCAGGTTCATGTATGGGTTCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098900.3 |
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