Pregenerated sensors for PATE8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091248

Ensembl transcript IDs: ENSMUST00000170030.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TGGCAAGGAGATGCCAAGCAGGAGTATCAAGAGGTATTTTCCAATTaGAGTGGGATCCTAGGAGCAGAGAGCAGCAGAAAGCTGCATACA	+
Preference number: 5 (lower is better) Translates to: WQGDAKQEYQEVFSN*SGILGAESSRKLHT Trigger: TGTATGCAGCTTTCTGCTGCTCTCTGCTCCTAGGATCCCACTGCAATTGGAAAATACCTCTTGATACTCCTGCTTGGCATCTCCTTGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170030.2
CDS GCA 72 bp	GATGCCAAGCAGGAGTATCAAGAGGTATTTTCCAATTaGAGTGGGATCCTAGGAGCAGAGAGCAGCAGAAAG	+
Preference number: 6 (lower is better) Translates to: DAKQEYQEVFSN*SGILGAESSRK Trigger: CTTTCTGCTGCTCTCTGCTCCTAGGATCCCACTGCAATTGGAAAATACCTCTTGATACTCCTGCTTGGCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170030.2
CDS CCA 72 bp	CAAGCAGGAGTATCAAGAGGTATTTTCCAATTGCAGTaGGATCCTAGGAGCAGAGAGCAGCAGAAAGCTGCA	+
Preference number: 6 (lower is better) Translates to: QAGVSRGIFQLQ*DPRSREQQKAA Trigger: TGCAGCTTTCTGCTGCTCTCTGCTCCTAGGATCCCACTGCAATTGGAAAATACCTCTTGATACTCCTGCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170030.2
CDS CCA 72 bp	AAGTCATCTGAAGTAACTGTCCATAAGAGACACTTCTaGTCTCTTCTGGCTACACAGTATCCTGACTGTGTT	+
Preference number: 6 (lower is better) Translates to: KSSEVTVHKRHF*SLLATQYPDCV Trigger: AACACAGTCAGGATACTGTGTAGCCAGAAGAGACCAGAAGTGTCTCTTATGGACAGTTACTTCAGATGACTT 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170030.2
CDS CAA 72 bp	TTATGTTCCGATCTCACACTTCCTCTAATAATGTATTaGTTCACACAATGGGTCCAACATGTCTGGGCCCCA	+
Preference number: 6 (lower is better) Translates to: LCSDLTLPLIMY*FTQWVQHVWAP Trigger: TGGGGCCCAGACATGTTGGACCCATTGTGTGAACAAATACATTATTAGAGGAAGTGTGAGATCGGAACATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170030.2
CDS CAA 90 bp	CCTGACTGTGTTAGACAATTCTTGGTAGAATTGAAATGTTTACACTaGACACATAACAGAGTGGCAAGGAGATGCCAAGCAGGAGTATCA	+
Preference number: 6 (lower is better) Translates to: PDCVRQFLVELKCLH*THNRVARRCQAGVS Trigger: TGATACTCCTGCTTGGCATCTCCTTGCCACTCTGTTATGTGTCAAGTGTAAACATTTCAATTCTACCAAGAATTGTCTAACACAGTCAGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170030.2
CDS CAA 90 bp	CTGGCTACACAGTATCCTGACTGTGTTAGACAATTCTTGGTAGAATaGAAATGTTTACACTTGACACATAACAGAGTGGCAAGGAGATGC	+
Preference number: 6 (lower is better) Translates to: LATQYPDCVRQFLVE*KCLHLTHNRVARRC Trigger: GCATCTCCTTGCCACTCTGTTATGTGTCAAGTGTAAACATTTCAATTCTACCAAGAATTGTCTAACACAGTCAGGATACTGTGTAGCCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170030.2
CDS CAA 90 bp	TGGTCTCTTCTGGCTACACAGTATCCTGACTGTGTTAGACAATTCTaGGTAGAATTGAAATGTTTACACTTGACACATAACAGAGTGGCA	+
Preference number: 6 (lower is better) Translates to: WSLLATQYPDCVRQF*VELKCLHLTHNRVA Trigger: TGCCACTCTGTTATGTGTCAAGTGTAAACATTTCAATTCTACCAAGAATTGTCTAACACAGTCAGGATACTGTGTAGCCAGAAGAGACCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170030.2

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