Pregenerated sensors for PATE7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090738Ensembl transcript IDs: ENSMUST00000171898.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AAATCCACAATCTCACAGTCAGACAAGATTCACCATCTTTGGCAGTaGATGTTCTCATTTCGTGTATACATTTCTGATGTGAATAGGATT | + |
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Preference number: 5 (lower is better) Translates to: KSTISQSDKIHHLWQ*MFSFRVYISDVNRI Trigger: AATCCTATTCACATCAGAAATGTATACACGAAATGAGAACATGCACTGCCAAAGATGGTGAATCTTGTCTGACTGTGAGATTGTGGATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171898.3 |
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| CDS GCA 72 bp | GATTTACATTCTCTACACATGAGAGCTAAAGCAGTTTaGATACAGAGTAGCAGAACGATGCTCAGCTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: DLHSLHMRAKAV*IQSSRTMLSSC Trigger: ACAGGAGCTGAGCATCGTTCTGCTACTCTGTATGCAAACTGCTTTAGCTCTCATGTGTAGAGAATGTAAATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171898.3 |
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| CDS GCA 72 bp | ATCTCACAGTCAGACAAGATTCACCATCTTTGGCAGTaGATGTTCTCATTTCGTGTATACATTTCTGATGTG | + |
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Preference number: 6 (lower is better) Translates to: ISQSDKIHHLWQ*MFSFRVYISDV Trigger: CACATCAGAAATGTATACACGAAATGAGAACATGCACTGCCAAAGATGGTGAATCTTGTCTGACTGTGAGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171898.3 |
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| CDS CAA 72 bp | ATCCACAATCTCACAGTCAGACAAGATTCACCATCTTaGGCAGTGCATGTTCTCATTTCGTGTATACATTTC | + |
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Preference number: 6 (lower is better) Translates to: IHNLTVRQDSPS*AVHVLISCIHF Trigger: GAAATGTATACACGAAATGAGAACATGCACTGCCAAAGATGGTGAATCTTGTCTGACTGTGAGATTGTGGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171898.3 |
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| CDS TCA 72 bp | ATTTCTGATGTGAATAGGATTTACATTCTCTACACATaGGAGCTAAAGCAGTTTGCATACAGAGTAGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: ISDVNRIYILYT*ELKQFAYRVAE Trigger: TTCTGCTACTCTGTATGCAAACTGCTTTAGCTCTCATGTGTAGAGAATGTAAATCCTATTCACATCAGAAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171898.3 |
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