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Pregenerated sensors for PATE6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032108

Ensembl transcript IDs: ENSMUST00000034619.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATTCAGATGCCTTTCTTTTCAGCATACTTAGCAAGCATAAGCTACTaGGTGTATTTCATATTTTGCCCTGGTCCTCCCTTTGTACTACTA +
Preference number: 1 (lower is better)
Translates to: IQMPFFSAYLASISY*VYFIFCPGPPFVLL
Trigger: TAGTAGTACAAAGGGAGGACCAGGGCAAAATATGAAATACACTCAGTAGCTTATGCTTGCTAAGTATGCTGAAAAGAAAGGCATCTGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034619.2
3UTR-3UTR GCA 90 bp AATGGAAACCAAGATTTAGCTATATTCATGGTAATAAGTCTAGGGATACCAAGCCCAGGTTCTATGACTTaGACAATATTGATTATCAGA +
Preference number: 2 (lower is better)
Translates to: NGNQDLAIFMVISLGIPSPGSMT*TILIIR
Trigger: TCTGATAATCAATATTGTGCAAGTCATAGAACCTGG...GCTTGGTATCCCTAGACTTATTACCATGAATATAGCTAAATCTTGGTTTCCATT
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034619.2
3UTR TCA 72 bp GCCTTATCACAGGTCCATAGCCATGGAACAAGACAGTaGAAGCCTAAAAGCAGAATCCACAGCAATCTTTCC +
Preference number: 3 (lower is better)
Translates to: ALSQVHSHGTRQ*KPKSRIHSNLS
Trigger: GGAAAGATTGCTGTGGATTCTGCTTTTAGGCTTTCACTGTCTTGTTCCATGGCTATGGACCTGTGATAAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034619.2
3UTR TCA 72 bp TTTAGATGCCAGTGGGTGAGAAGTTTTGGTGAGCCATaGCCTTTTGCTGTCATGAAATTCAGCCTTATCACA +
Preference number: 3 (lower is better)
Translates to: FRCQWVRSFGEP*PFAVMKFSLIT
Trigger: TGTGATAAGGCTGAATTTCATGACAGCAAAAGGTCATGGCTCACCAAAACTTCTCACCCACTGGCATCTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034619.2
CDS-3UTR GCA 90 bp TTCAAAAGAACAAGAAATTTCTGTATGTCCCCAGGTTCTATGACTTGCACAATATTGCATACCAGGTTCTaGGGATCATACACGTTTCAC +
Preference number: 4 (lower is better)
Translates to: FKRTRNFCMSPGSMTCTILHTRF*GSYTFH
Trigger: GTGAAACGTGTATGATCCGCAGAACCTGGTATGCAA...TATTGTGCAAGTCATAGAACCTGGGGACATACAGAAATTTCTTGTTCTTTTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034619.2
CDS-3UTR TCA 90 bp TTCAAAAGAACAAGAAATTTCTGTATGTCCCCAGGTTCTATGACTTGCACAATATTACAGAAATCTCCATaGCTACAGCAGTATGTATGT +
Preference number: 4 (lower is better)
Translates to: FKRTRNFCMSPGSMTCTILQKSP*LQQYVC
Trigger: ACATACATACTGCTGTAGTCATGGAGATTTCTGTAA...TATTGTGCAAGTCATAGAACCTGGGGACATACAGAAATTTCTTGTTCTTTTGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034619.2
CDS-3UTR GCA 90 bp CATGGAAACACGTTTATTCAGATGCCTTTCTTTTCAGCATACTTAGCAAGCATAATTATGAATTTCATTTaGATACCAGGTTCTGCGGAT +
Preference number: 4 (lower is better)
Translates to: HGNTFIQMPFFSAYLASIIMNFI*IPGSAD
Trigger: ATCCGCAGAACCTGGTATGCAAATGAAATTCATAAT...TATGCTTGCTAAGTATGCTGAAAAGAAAGGCATCTGAATAAACGTGTTTCCATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034619.2
CDS-3UTR CAA 90 bp CCTAAAAGCAGAATCCACAGCAATCTTTCCTCCTTTAAACTGTATATTGGAAGTTGCATGTCTCCTTTTTaGTGGCACACTCCCCATTTT +
Preference number: 5 (lower is better)
Translates to: PKSRIHSNLSSFKLYIGSCMSPF*WHTPHF
Trigger: AAAATGGGGAGTGTGCCACAAAAAAGGAGACATGCA...ACTTCCAATATACAGTTTAAAGGAGGAAAGATTGCTGTGGATTCTGCTTTTAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034619.2
CDS TCA 90 bp AATTTACAAGAATTCGTGCACTTAGTCTCAGCATCTTGCAGATTATaGATTTCATTTGCATACCAGGTTCTGCGGATCATACACGTTTCA +
Preference number: 5 (lower is better)
Translates to: NLQEFVHLVSASCRL*ISFAYQVLRIIHVS
Trigger: TGAAACGTGTATGATCCGCAGAACCTGGTATGCAAATGAAATTCATAATCTGCAAGATGCTGAGACTAAGTGCACGAATTCTTGTAAATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034619.2
CDS-3UTR CAA 90 bp CATGGAAACACGTTTATTCAGATGCCTTTCTTTTCAGCATACTTAGCAAGCATAGATTATGAATTTCATTaGCATACCAGGTTCTGCGGA +
Preference number: 5 (lower is better)
Translates to: HGNTFIQMPFFSAYLASIDYEFH*HTRFCG
Trigger: TCCGCAGAACCTGGTATGCAAATGAAATTCATAATC...TATGCTTGCTAAGTATGCTGAAAAGAAAGGCATCTGAATAAACGTGTTTCCATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034619.2
CDS GCA 72 bp CTTAGTCTCAGCATCTTGCAGATTATGAATTTCATTTaGATACCAGGTTCTGCGGATCATACACGTTTCACC +
Preference number: 6 (lower is better)
Translates to: LSLSILQIMNFI*IPGSADHTRFT
Trigger: GGTGAAACGTGTATGATCCGCAGAACCTGGTATGCAAATGAAATTCATAATCTGCAAGATGCTGAGACTAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034619.2
CDS TCA 72 bp ACGATGGGTAAATTAATGTCATTACAGAAATCTCCATaGCTACAGCAGTATGTATGTGTTGTTAGATATCCA +
Preference number: 6 (lower is better)
Translates to: TMGKLMSLQKSP*LQQYVCVVRYP
Trigger: TGGATATCTAACAACACATACATACTGCTGTAGTCATGGAGATTTCTGTAATGACATTAATTTACCCATCGT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034619.2