RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PATE5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047980

Ensembl transcript IDs: ENSMUST00000054175.7

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp AGACCTTTCAAAGTTGAGCATCATCATAGAATGGTGAGCTTCTCTAGCCAAATGTACAGAGGGAATTGTTaGGAAATGCCAGGAAGAGGA +
Preference number: 2 (lower is better)
Translates to: RPFKVEHHHRMVSFSSQMYRGNC*EMPGRG
Trigger: TCCTCTTCCTGGCATTTCTCAACAATTCCCTCTGTA...CATTTGGCTAGAGAAGCTCACCATTCTATGATGATGCTCAACTTTGAAAGGTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
3UTR-3UTR CCA 90 bp GATATTTTCTCTGTGACCCAAAAGGCAGTTGACACCCAATATGAATTCCTACAAGAGGAAATGGAAAACTaGGACACAGTGCCATTGCTG +
Preference number: 2 (lower is better)
Translates to: DIFSVTQKAVDTQYEFLQEEMEN*DTVPLL
Trigger: CAGCAATGGCACTGTGTCCCAGTTTTCCATTTCCTC...TTGTAGGAATTCATATTGGGTGTCAACTGCCTTTTGGGTCACAGAGAAAATATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
3UTR-3UTR GCA 90 bp TTTATGGCTCCTCTTGCTCTTGCTATGACGGATAGAACAGGGAAGATTTCCTGGTTCATAAACTTTGAATaGATGACCCTTCCTTCCTTT +
Preference number: 2 (lower is better)
Translates to: FMAPLALAMTDRTGKISWFINFE*MTLPSF
Trigger: AAAGGAAGGAAGGGTCATGCATTCAAAGTTTATGAA...CCAGGAAATCTTCCCTGTTCTATCCGTCATAGCAAGAGCAAGAGGAGCCATAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
3UTR-3UTR TCA 90 bp AATAGATTTATGGCTCCTCTTGCTCTTGCTATGACGGATAGAACAGGGAAGATTACAGTTCATAAACTTTaGATGCATGACCCTTCCTTC +
Preference number: 2 (lower is better)
Translates to: NRFMAPLALAMTDRTGKITVHKL*MHDPSF
Trigger: GAAGGAAGGGTCATGCATTCAAAGTTTATGAACTGT...AATCTTCCCTGTTCTATCCGTCATAGCAAGAGCAAGAGGAGCCATAAATCTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
3UTR-3UTR GCA 90 bp GATATTTTCTCTGTGACCCAAAAGGCAGTTGACACCCAATATGAATTCCTACAAGCTTCTCTAGCCAAATaGAAAGAACAGTTCATAAAC +
Preference number: 2 (lower is better)
Translates to: DIFSVTQKAVDTQYEFLQASLAK*KEQFIN
Trigger: GTTTATGAACTGTTCTTTGCATTTGGCTAGAGAAGC...TTGTAGGAATTCATATTGGGTGTCAACTGCCTTTTGGGTCACAGAGAAAATATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
3UTR-3UTR GCA 90 bp TATCAAATTAGACCTTTCAAAGTTGAGCATCATCATAGAATGGTGAGCTTCTCTGGAATTGTTGAGAAATaGCAGGAAGAGGAAATGGAA +
Preference number: 2 (lower is better)
Translates to: YQIRPFKVEHHHRMVSFSGIVEK*QEEEME
Trigger: TTCCATTTCCTCTTCCTGGCATTTCTCAACAATTCC...AGAGAAGCTCACCATTCTATGATGATGCTCAACTTTGAAAGGTCTAATTTGATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
3UTR-3UTR CAA 90 bp AATAGATTTATGGCTCCTCTTGCTCTTGCTATGACGGATAGAACAGGGAAGATTATACAGAGGGAATTGTaGAGAAATGCCAGGAAGAGG +
Preference number: 3 (lower is better)
Translates to: NRFMAPLALAMTDRTGKIIQREL*RNARKR
Trigger: CCTCTTCCTGGCATTTCTCAACAATTCCCTCTGTAT...AATCTTCCCTGTTCTATCCGTCATAGCAAGAGCAAGAGGAGCCATAAATCTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
3UTR-3UTR CAA 90 bp TTTATGGCTCCTCTTGCTCTTGCTATGACGGATAGAACAGGGAAGATTTCCTGGTTAGACCTTTCAAAGTaGAGCATCATCATAGAATGG +
Preference number: 3 (lower is better)
Translates to: FMAPLALAMTDRTGKISWLDLSK*SIIIEW
Trigger: CCATTCTATGATGATGCTCAACTTTGAAAGGTCTAA...CCAGGAAATCTTCCCTGTTCTATCCGTCATAGCAAGAGCAAGAGGAGCCATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
3UTR-3UTR CAA 90 bp AGACCTTTCAAAGTTGAGCATCATCATAGAATGGTGAGCTTCTCTAGCCAAATGAACATACAGAGGGAATaGTTGAGAAATGCCAGGAAG +
Preference number: 3 (lower is better)
Translates to: RPFKVEHHHRMVSFSSQMNIQRE*LRNARK
Trigger: CTTCCTGGCATTTCTCAACAATTCCCTCTGTATGTT...CATTTGGCTAGAGAAGCTCACCATTCTATGATGATGCTCAACTTTGAAAGGTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
3UTR TCA 72 bp TCTAAATCAAATCATGCATTTGTGATATTTTCTCTGTaGCCCAAAAGGCAGTTGACACCCAATATGAATTCC +
Preference number: 3 (lower is better)
Translates to: SKSNHAFVIFSL*PKRQLTPNMNS
Trigger: GGAATTCATATTGGGTGTCAACTGCCTTTTGGGTCACAGAGAAAATATCACAAATGCATGATTTGATTTAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS-3UTR GCA 90 bp AATAGATTTATGGCTCCTCTTGCTCTTGCTATGACGGATAGAACAGGGAAGATTGTTTTCAGCCATACATaGCTTATCACAGTCCAATTC +
Preference number: 4 (lower is better)
Translates to: NRFMAPLALAMTDRTGKIVFSHT*LITVQF
Trigger: GAATTGGACTGTGATAAGGCATGTATGGCTGAAAAC...AATCTTCCCTGTTCTATCCGTCATAGCAAGAGCAAGAGGAGCCATAAATCTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS-3UTR GCA 90 bp TATCAAATTAGACCTTTCAAAGTTGAGCATCATCATAGAATGGTGAGCTTCTCTAGAGCAAAAGATGCCTaGATCAACAGAAAGTGTAGG +
Preference number: 4 (lower is better)
Translates to: YQIRPFKVEHHHRMVSFSRAKDA*INRKCR
Trigger: CCTACACTTTCTGTTGATGCAGGCATCTTTTGCTCT...AGAGAAGCTCACCATTCTATGATGATGCTCAACTTTGAAAGGTCTAATTTGATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS-3UTR GCA 90 bp TATCAAATTAGACCTTTCAAAGTTGAGCATCATCATAGAATGGTGAGCTTCTCTCACAAGAGCAAAAGATaGCTGCATCAACAGAAAGTG +
Preference number: 4 (lower is better)
Translates to: YQIRPFKVEHHHRMVSFSHKSKR*LHQQKV
Trigger: CACTTTCTGTTGATGCAGGCATCTTTTGCTCTTGTG...AGAGAAGCTCACCATTCTATGATGATGCTCAACTTTGAAAGGTCTAATTTGATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS-3UTR CCA 90 bp TATCAAATTAGACCTTTCAAAGTTGAGCATCATCATAGAATGGTGAGCTTCTCTATGCACACTGTAGCTTaGACTTGGATGAACACAAGA +
Preference number: 4 (lower is better)
Translates to: YQIRPFKVEHHHRMVSFSMHTVA*TWMNTR
Trigger: TCTTGTGTTCATCCAAGTCCAAGCTACAGTGTGCAT...AGAGAAGCTCACCATTCTATGATGATGCTCAACTTTGAAAGGTCTAATTTGATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS GCA 90 bp TACATGCCTTATCACAGTCCAATTCGGTGTGATTGTGGACCCACTTaGCTGTGTGTGAGAATAGGAAGTAATTCCTGGTTCTGCATCCAG +
Preference number: 5 (lower is better)
Translates to: YMPYHSPIRCDCGPT*LCVRIGSNSWFCIQ
Trigger: CTGGATGCAGAACCAGGAATTACTTCCTATTCTCACACACAGGCAAGTGGGTCCACAATCACACCGAATTGGACTGTGATAAGGCATGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS GCA 90 bp GGTAGATATCTTCAAGGCTCCAAGATACATGTTTTCAGCCATACATaGCTTATCACAGTCCAATTCGGTGTGATTGTGGACCCACTTGCC +
Preference number: 5 (lower is better)
Translates to: GRYLQGSKIHVFSHT*LITVQFGVIVDPLA
Trigger: GGCAAGTGGGTCCACAATCACACCGAATTGGACTGTGATAAGGCATGTATGGCTGAAAACATGTATCTTGGAGCCTTGAAGATATCTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS CCA 90 bp CAATGTCCACTCTTAAAAGACTTGCAGACCATGCACACTGTAGCTTaGACTTGGATGAACACAAGAGCAAAAGATGCCTGCATCAACAGA +
Preference number: 5 (lower is better)
Translates to: QCPLLKDLQTMHTVA*TWMNTRAKDACINR
Trigger: TCTGTTGATGCAGGCATCTTTTGCTCTTGTGTTCATCCAAGTCCAAGCTACAGTGTGCATGGTCTGCAAGTCTTTTAAGAGTGGACATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS-3UTR CAA 90 bp AATAGATTTATGGCTCCTCTTGCTCTTGCTATGACGGATAGAACAGGGAAGATTCCACTCTTAAAAGACTaGCAGACCATGCACACTGTA +
Preference number: 5 (lower is better)
Translates to: NRFMAPLALAMTDRTGKIPLLKD*QTMHTV
Trigger: TACAGTGTGCATGGTCTGCAAGTCTTTTAAGAGTGG...AATCTTCCCTGTTCTATCCGTCATAGCAAGAGCAAGAGGAGCCATAAATCTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS-3UTR CAA 90 bp AATAGATTTATGGCTCCTCTTGCTCTTGCTATGACGGATAGAACAGGGAAGATTTATCTTGTAGTGCAGTaGTTCTTGCCTACCAAACAA +
Preference number: 5 (lower is better)
Translates to: NRFMAPLALAMTDRTGKIYLVVQ*FLPTKQ
Trigger: TTGTTTGGTAGGCAAGAACAACTGCACTACAAGATA...AATCTTCCCTGTTCTATCCGTCATAGCAAGAGCAAGAGGAGCCATAAATCTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS-3UTR CAA 90 bp GATATTTTCTCTGTGACCCAAAAGGCAGTTGACACCCAATATGAATTCCTACAACAGAAATCTTCACCTTaGCAACAAAAGGTAGATATC +
Preference number: 5 (lower is better)
Translates to: DIFSVTQKAVDTQYEFLQQKSSP*QQKVDI
Trigger: GATATCTACCTTTTGTTGCAAAGGTGAAGATTTCTG...TTGTAGGAATTCATATTGGGTGTCAACTGCCTTTTGGGTCACAGAGAAAATATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS GCA 72 bp GCTTGGACTTGGATGAACACAAGAGCAAAAGATGCCTaGATCAACAGAAAGTGTAGGAGCAGGAGCTTGCCC +
Preference number: 6 (lower is better)
Translates to: AWTWMNTRAKDA*INRKCRSRSLP
Trigger: GGGCAAGCTCCTGCTCCTACACTTTCTGTTGATGCAGGCATCTTTTGCTCTTGTGTTCATCCAAGTCCAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS GCA 72 bp TATCACAGTCCAATTCGGTGTGATTGTGGACCCACTTaGCTGTGTGTGAGAATAGGAAGTAATTCCTGGTTC +
Preference number: 6 (lower is better)
Translates to: YHSPIRCDCGPT*LCVRIGSNSWF
Trigger: GAACCAGGAATTACTTCCTATTCTCACACACAGGCAAGTGGGTCCACAATCACACCGAATTGGACTGTGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS CCA 72 bp AAAGACTTGCAGACCATGCACACTGTAGCTTGGACTTaGATGAACACAAGAGCAAAAGATGCCTGCATCAAC +
Preference number: 6 (lower is better)
Translates to: KDLQTMHTVAWT*MNTRAKDACIN
Trigger: GTTGATGCAGGCATCTTTTGCTCTTGTGTTCATCCAAGTCCAAGCTACAGTGTGCATGGTCTGCAAGTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS CAA 90 bp TCCACTCTTAAAAGACTTGCAGACCATGCACACTGTAGCTTGGACTaGGATGAACACAAGAGCAAAAGATGCCTGCATCAACAGAAAGTG +
Preference number: 6 (lower is better)
Translates to: STLKRLADHAHCSLD*DEHKSKRCLHQQKV
Trigger: CACTTTCTGTTGATGCAGGCATCTTTTGCTCTTGTGTTCATCCAAGTCCAAGCTACAGTGTGCATGGTCTGCAAGTCTTTTAAGAGTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS CAA 90 bp ACAATGTCCACTCTTAAAAGACTTGCAGACCATGCACACTGTAGCTaGGACTTGGATGAACACAAGAGCAAAAGATGCCTGCATCAACAG +
Preference number: 6 (lower is better)
Translates to: TMSTLKRLADHAHCS*DLDEHKSKRCLHQQ
Trigger: CTGTTGATGCAGGCATCTTTTGCTCTTGTGTTCATCCAAGTCCAAGCTACAGTGTGCATGGTCTGCAAGTCTTTTAAGAGTGGACATTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS CAA 72 bp AAAAGACTTGCAGACCATGCACACTGTAGCTTGGACTaGGATGAACACAAGAGCAAAAGATGCCTGCATCAA +
Preference number: 6 (lower is better)
Translates to: KRLADHAHCSLD*DEHKSKRCLHQ
Trigger: TTGATGCAGGCATCTTTTGCTCTTGTGTTCATCCAAGTCCAAGCTACAGTGTGCATGGTCTGCAAGTCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS CAA 72 bp ACTCTTAAAAGACTTGCAGACCATGCACACTGTAGCTaGGACTTGGATGAACACAAGAGCAAAAGATGCCTG +
Preference number: 6 (lower is better)
Translates to: TLKRLADHAHCS*DLDEHKSKRCL
Trigger: CAGGCATCTTTTGCTCTTGTGTTCATCCAAGTCCAAGCTACAGTGTGCATGGTCTGCAAGTCTTTTAAGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS CAA 90 bp TTCCTGGTTCTGCATCCAGGCTTATATCTTGTAGTGCAGTTGTTCTaGCCTACCAAACAATGTCCACTCTTAAAAGACTTGCAGACCATG +
Preference number: 6 (lower is better)
Translates to: FLVLHPGLYLVVQLF*PTKQCPLLKDLQTM
Trigger: CATGGTCTGCAAGTCTTTTAAGAGTGGACATTGTTTGGTAGGCAAGAACAACTGCACTACAAGATATAAGCCTGGATGCAGAACCAGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7
CDS CAA 72 bp CTGGTTCTGCATCCAGGCTTATATCTTGTAGTGCAGTaGTTCTTGCCTACCAAACAATGTCCACTCTTAAAA +
Preference number: 6 (lower is better)
Translates to: LVLHPGLYLVVQ*FLPTKQCPLLK
Trigger: TTTTAAGAGTGGACATTGTTTGGTAGGCAAGAACAACTGCACTACAAGATATAAGCCTGGATGCAGAACCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054175.7