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Pregenerated sensors for PATE4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032099

Ensembl transcript IDs: ENSMUST00000034610.4

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATTGCTCTTCTCAGCTTCCAGTGGCCTTTTATATCTCTTGGCTCATaGCCACTTGATCCATCTTCAAGGGACATCACTCCAATTTGTGAG +
Preference number: 1 (lower is better)
Translates to: IALLSFQWPFISLGS*PLDPSSRDITPICE
Trigger: CTCACAAATTGGAGTGATGTCCCTTGAAGATGGATCAAGTGGTCATGAGCCAAGAGATATAAAAGGCCACTGGAAGCTGAGAAGAGCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4
3UTR-3UTR GCA 90 bp CACTTGATCCATCTTCAAGGGACATCACTCCAATTTGTGAGTCACGATTACATAGGACACAGCCTCTGTTaGTATCTCAGGGATCTCAGG +
Preference number: 2 (lower is better)
Translates to: HLIHLQGTSLQFVSHDYIGHSLC*YLRDLR
Trigger: CCTGAGATCCCTGAGATAGCAACAGAGGCTGTGTCC...TATGTAATCGTGACTCACAAATTGGAGTGATGTCCCTTGAAGATGGATCAAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4
3UTR-3UTR GCA 90 bp CTTACAACTAGGACCCACCCTGACAATCCAGAAATAGCTTTCCATCTGAGATCCTCTTTTGCCACTTACTaGAGCATTCACAGATTCTCG +
Preference number: 2 (lower is better)
Translates to: LTTRTHPDNPEIAFHLRSSFATY*SIHRFS
Trigger: CGAGAATCTGTGAATGCTGCAGTAAGTGGCAAAAGA...GGATCTCAGATGGAAAGCTATTTCTGGATTGTCAGGGTGGGTCCTAGTTGTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4
3UTR CAA 90 bp CATGGGGATATAATTAAGTATCAGCATGGCAAGTTTCTGGAGGCATaGAGAAAAATTAAATTCATTGCTCTTCTCAGCTTCCAGTGGCCT +
Preference number: 2 (lower is better)
Translates to: HGDIIKYQHGKFLEA*RKIKFIALLSFQWP
Trigger: AGGCCACTGGAAGCTGAGAAGAGCAATGAATTTAATTTTTCTCAATGCCTCCAGAAACTTGCCATGCTGATACTTAATTATATCCCCATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4
3UTR GCA 72 bp AGAAGTCTTTCACTGAAACGAGGACACAGCCTCTGTTaGTATCTCAGGGATCTCAGGCCATCATGGAAATCG +
Preference number: 3 (lower is better)
Translates to: RSLSLKRGHSLC*YLRDLRPSWKS
Trigger: CGATTTCCATGATGGCCTGAGATCCCTGAGATAGCAACAGAGGCTGTGTCCTCGTTTCAGTGAAAGACTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4
3UTR-3UTR CAA 90 bp AGAAATAGCTTTCCATCTGAGATCCTTATTCACATCTCCAATGTCTCTTTTGCCAGGACACAGCCTCTGTaGCTATCTCAGGGATCTCAG +
Preference number: 3 (lower is better)
Translates to: RNSFPSEILIHISNVSFARTQPL*LSQGSQ
Trigger: CTGAGATCCCTGAGATAGCAACAGAGGCTGTGTCCT...GGCAAAAGAGACATTGGAGATGTGAATAAGGATCTCAGATGGAAAGCTATTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4
3UTR CAA 72 bp TCCAGTGGCCTTTTATATCTCTTGGCTCATGACCACTaGATCCATCTTCAAGGGACATCACTCCAATTTGTG +
Preference number: 4 (lower is better)
Translates to: SSGLLYLLAHDH*IHLQGTSLQFV
Trigger: CACAAATTGGAGTGATGTCCCTTGAAGATGGATCAAGTGGTCATGAGCCAAGAGATATAAAAGGCCACTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4
CDS-3UTR TCA 90 bp TTTTTGCAGTGCTCTAATGGTGTGGTCAAGAAGTCTTTCACTGAAACGAGGACATGTTTTTCCTTGCACTaGGGCGAGCACATTTGCTTT +
Preference number: 4 (lower is better)
Translates to: FLQCSNGVVKKSFTETRTCFSLH*GEHICF
Trigger: AAAGCAAATGTGCTCGCCTCAGTGCAAGGAAAAACA...TGTCCTCGTTTCAGTGAAAGACTTCTTGACCACACCATTAGAGCACTGCAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4
CDS-3UTR GCA 90 bp CCACTTGATCCATCTTCAAGGGACATCACTCCAATTTGTGAGTCACGATTACATAGTGTGATACGGTACTaGATGATTCACCAGGTTTTG +
Preference number: 4 (lower is better)
Translates to: PLDPSSRDITPICESRLHSVIRY*MIHQVL
Trigger: CAAAACCTGGTGAATCATGCAGTACCGTATCACACT...ATGTAATCGTGACTCACAAATTGGAGTGATGTCCCTTGAAGATGGATCAAGTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4
CDS-3UTR CAA 90 bp TTGGCTCATGACCACTTGATCCATCTTCAAGGGACATCACTCCAATTTGTGAGTTTGAGTACACATGCTTaGTTCCAACAAAGTGTGATA +
Preference number: 5 (lower is better)
Translates to: LAHDHLIHLQGTSLQFVSLSTHA*FQQSVI
Trigger: TATCACACTTTGTTGGAACAAAGCATGTGTACTCAA...ACTCACAAATTGGAGTGATGTCCCTTGAAGATGGATCAAGTGGTCATGAGCCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4
CDS CAA 90 bp TTTCCTTGCACTGAGGCGAGCACATTTGCTTTGAGTACACATGCTTaGTTCCAACAAAGTGTGATACGGTACTGCATGATTCACCAGGTT +
Preference number: 6 (lower is better)
Translates to: FPCTEASTFALSTHA*FQQSVIRYCMIHQV
Trigger: AACCTGGTGAATCATGCAGTACCGTATCACACTTTGTTGGAACAAAGCATGTGTACTCAAAGCAAATGTGCTCGCCTCAGTGCAAGGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4
CDS GCA 72 bp ACACATGCTTTGTTCCAACAAAGTGTGATACGGTACTaGATGATTCACCAGGTTTTGCAACGCATCTGCTTT +
Preference number: 6 (lower is better)
Translates to: THALFQQSVIRY*MIHQVLQRICF
Trigger: AAAGCAGATGCGTTGCAAAACCTGGTGAATCATGCAGTACCGTATCACACTTTGTTGGAACAAAGCATGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4
CDS CAA 72 bp CAAAGTGTGATACGGTACTGCATGATTCACCAGGTTTaGCAACGCATCTGCTTTGTGACATTGTACATCTTG +
Preference number: 6 (lower is better)
Translates to: QSVIRYCMIHQV*QRICFVTLYIL
Trigger: CAAGATGTACAATGTCACAAAGCAGATGCGTTGCAAAACCTGGTGAATCATGCAGTACCGTATCACACTTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4
CDS CAA 72 bp ACTGAGGCGAGCACATTTGCTTTGAGTACACATGCTTaGTTCCAACAAAGTGTGATACGGTACTGCATGATT +
Preference number: 6 (lower is better)
Translates to: TEASTFALSTHA*FQQSVIRYCMI
Trigger: AATCATGCAGTACCGTATCACACTTTGTTGGAACAAAGCATGTGTACTCAAAGCAAATGTGCTCGCCTCAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4
CDS CAA 72 bp GCTGTTTTTCCTTGCACTGAGGCGAGCACATTTGCTTaGAGTACACATGCTTTGTTCCAACAAAGTGTGATA +
Preference number: 6 (lower is better)
Translates to: AVFPCTEASTFA*STHALFQQSVI
Trigger: TATCACACTTTGTTGGAACAAAGCATGTGTACTCAAAGCAAATGTGCTCGCCTCAGTGCAAGGAAAAACAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4
CDS TCA 72 bp AACTTCTTTCCAGTGTTAAGCTGTTTTTCCTTGCACTaGGGCGAGCACATTTGCTTTGAGTACACATGCTTT +
Preference number: 6 (lower is better)
Translates to: NFFPVLSCFSLH*GEHICFEYTCF
Trigger: AAAGCATGTGTACTCAAAGCAAATGTGCTCGCCTCAGTGCAAGGAAAAACAGCTTAACACTGGAAAGAAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4
CDS CAA 72 bp GTTTTGCAACGCATCTGCTTTGTGACATTGTACATCTaGAATCTCGTGACTTTTCACATGAATTACAGATCA +
Preference number: 6 (lower is better)
Translates to: VLQRICFVTLYI*NLVTFHMNYRS
Trigger: TGATCTGTAATTCATGTGAAAAGTCACGAGATTCAAGATGTACAATGTCACAAAGCAGATGCGTTGCAAAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034610.4