Pregenerated sensors for PATE4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032099Ensembl transcript IDs: ENSMUST00000034610.4
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
---|---|---|
3UTR TCA 90 bp | ATTGCTCTTCTCAGCTTCCAGTGGCCTTTTATATCTCTTGGCTCATaGCCACTTGATCCATCTTCAAGGGACATCACTCCAATTTGTGAG | + |
Preference number: 1 (lower is better) Translates to: IALLSFQWPFISLGS*PLDPSSRDITPICE Trigger: CTCACAAATTGGAGTGATGTCCCTTGAAGATGGATCAAGTGGTCATGAGCCAAGAGATATAAAAGGCCACTGGAAGCTGAGAAGAGCAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |
||
3UTR-3UTR GCA 90 bp | CACTTGATCCATCTTCAAGGGACATCACTCCAATTTGTGAGTCACGATTACATAGGACACAGCCTCTGTTaGTATCTCAGGGATCTCAGG | + |
Preference number: 2 (lower is better) Translates to: HLIHLQGTSLQFVSHDYIGHSLC*YLRDLR Trigger: CCTGAGATCCCTGAGATAGCAACAGAGGCTGTGTCC...TATGTAATCGTGACTCACAAATTGGAGTGATGTCCCTTGAAGATGGATCAAGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |
||
3UTR-3UTR GCA 90 bp | CTTACAACTAGGACCCACCCTGACAATCCAGAAATAGCTTTCCATCTGAGATCCTCTTTTGCCACTTACTaGAGCATTCACAGATTCTCG | + |
Preference number: 2 (lower is better) Translates to: LTTRTHPDNPEIAFHLRSSFATY*SIHRFS Trigger: CGAGAATCTGTGAATGCTGCAGTAAGTGGCAAAAGA...GGATCTCAGATGGAAAGCTATTTCTGGATTGTCAGGGTGGGTCCTAGTTGTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |
||
3UTR CAA 90 bp | CATGGGGATATAATTAAGTATCAGCATGGCAAGTTTCTGGAGGCATaGAGAAAAATTAAATTCATTGCTCTTCTCAGCTTCCAGTGGCCT | + |
Preference number: 2 (lower is better) Translates to: HGDIIKYQHGKFLEA*RKIKFIALLSFQWP Trigger: AGGCCACTGGAAGCTGAGAAGAGCAATGAATTTAATTTTTCTCAATGCCTCCAGAAACTTGCCATGCTGATACTTAATTATATCCCCATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |
||
3UTR GCA 72 bp | AGAAGTCTTTCACTGAAACGAGGACACAGCCTCTGTTaGTATCTCAGGGATCTCAGGCCATCATGGAAATCG | + |
Preference number: 3 (lower is better) Translates to: RSLSLKRGHSLC*YLRDLRPSWKS Trigger: CGATTTCCATGATGGCCTGAGATCCCTGAGATAGCAACAGAGGCTGTGTCCTCGTTTCAGTGAAAGACTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |
||
3UTR-3UTR CAA 90 bp | AGAAATAGCTTTCCATCTGAGATCCTTATTCACATCTCCAATGTCTCTTTTGCCAGGACACAGCCTCTGTaGCTATCTCAGGGATCTCAG | + |
Preference number: 3 (lower is better) Translates to: RNSFPSEILIHISNVSFARTQPL*LSQGSQ Trigger: CTGAGATCCCTGAGATAGCAACAGAGGCTGTGTCCT...GGCAAAAGAGACATTGGAGATGTGAATAAGGATCTCAGATGGAAAGCTATTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |
||
3UTR CAA 72 bp | TCCAGTGGCCTTTTATATCTCTTGGCTCATGACCACTaGATCCATCTTCAAGGGACATCACTCCAATTTGTG | + |
Preference number: 4 (lower is better) Translates to: SSGLLYLLAHDH*IHLQGTSLQFV Trigger: CACAAATTGGAGTGATGTCCCTTGAAGATGGATCAAGTGGTCATGAGCCAAGAGATATAAAAGGCCACTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |
||
CDS-3UTR TCA 90 bp | TTTTTGCAGTGCTCTAATGGTGTGGTCAAGAAGTCTTTCACTGAAACGAGGACATGTTTTTCCTTGCACTaGGGCGAGCACATTTGCTTT | + |
Preference number: 4 (lower is better) Translates to: FLQCSNGVVKKSFTETRTCFSLH*GEHICF Trigger: AAAGCAAATGTGCTCGCCTCAGTGCAAGGAAAAACA...TGTCCTCGTTTCAGTGAAAGACTTCTTGACCACACCATTAGAGCACTGCAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |
||
CDS-3UTR GCA 90 bp | CCACTTGATCCATCTTCAAGGGACATCACTCCAATTTGTGAGTCACGATTACATAGTGTGATACGGTACTaGATGATTCACCAGGTTTTG | + |
Preference number: 4 (lower is better) Translates to: PLDPSSRDITPICESRLHSVIRY*MIHQVL Trigger: CAAAACCTGGTGAATCATGCAGTACCGTATCACACT...ATGTAATCGTGACTCACAAATTGGAGTGATGTCCCTTGAAGATGGATCAAGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |
||
CDS-3UTR CAA 90 bp | TTGGCTCATGACCACTTGATCCATCTTCAAGGGACATCACTCCAATTTGTGAGTTTGAGTACACATGCTTaGTTCCAACAAAGTGTGATA | + |
Preference number: 5 (lower is better) Translates to: LAHDHLIHLQGTSLQFVSLSTHA*FQQSVI Trigger: TATCACACTTTGTTGGAACAAAGCATGTGTACTCAA...ACTCACAAATTGGAGTGATGTCCCTTGAAGATGGATCAAGTGGTCATGAGCCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |
||
CDS CAA 90 bp | TTTCCTTGCACTGAGGCGAGCACATTTGCTTTGAGTACACATGCTTaGTTCCAACAAAGTGTGATACGGTACTGCATGATTCACCAGGTT | + |
Preference number: 6 (lower is better) Translates to: FPCTEASTFALSTHA*FQQSVIRYCMIHQV Trigger: AACCTGGTGAATCATGCAGTACCGTATCACACTTTGTTGGAACAAAGCATGTGTACTCAAAGCAAATGTGCTCGCCTCAGTGCAAGGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |
||
CDS GCA 72 bp | ACACATGCTTTGTTCCAACAAAGTGTGATACGGTACTaGATGATTCACCAGGTTTTGCAACGCATCTGCTTT | + |
Preference number: 6 (lower is better) Translates to: THALFQQSVIRY*MIHQVLQRICF Trigger: AAAGCAGATGCGTTGCAAAACCTGGTGAATCATGCAGTACCGTATCACACTTTGTTGGAACAAAGCATGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |
||
CDS CAA 72 bp | CAAAGTGTGATACGGTACTGCATGATTCACCAGGTTTaGCAACGCATCTGCTTTGTGACATTGTACATCTTG | + |
Preference number: 6 (lower is better) Translates to: QSVIRYCMIHQV*QRICFVTLYIL Trigger: CAAGATGTACAATGTCACAAAGCAGATGCGTTGCAAAACCTGGTGAATCATGCAGTACCGTATCACACTTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |
||
CDS CAA 72 bp | ACTGAGGCGAGCACATTTGCTTTGAGTACACATGCTTaGTTCCAACAAAGTGTGATACGGTACTGCATGATT | + |
Preference number: 6 (lower is better) Translates to: TEASTFALSTHA*FQQSVIRYCMI Trigger: AATCATGCAGTACCGTATCACACTTTGTTGGAACAAAGCATGTGTACTCAAAGCAAATGTGCTCGCCTCAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |
||
CDS CAA 72 bp | GCTGTTTTTCCTTGCACTGAGGCGAGCACATTTGCTTaGAGTACACATGCTTTGTTCCAACAAAGTGTGATA | + |
Preference number: 6 (lower is better) Translates to: AVFPCTEASTFA*STHALFQQSVI Trigger: TATCACACTTTGTTGGAACAAAGCATGTGTACTCAAAGCAAATGTGCTCGCCTCAGTGCAAGGAAAAACAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |
||
CDS TCA 72 bp | AACTTCTTTCCAGTGTTAAGCTGTTTTTCCTTGCACTaGGGCGAGCACATTTGCTTTGAGTACACATGCTTT | + |
Preference number: 6 (lower is better) Translates to: NFFPVLSCFSLH*GEHICFEYTCF Trigger: AAAGCATGTGTACTCAAAGCAAATGTGCTCGCCTCAGTGCAAGGAAAAACAGCTTAACACTGGAAAGAAGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |
||
CDS CAA 72 bp | GTTTTGCAACGCATCTGCTTTGTGACATTGTACATCTaGAATCTCGTGACTTTTCACATGAATTACAGATCA | + |
Preference number: 6 (lower is better) Translates to: VLQRICFVTLYI*NLVTFHMNYRS Trigger: TGATCTGTAATTCATGTGAAAAGTCACGAGATTCAAGATGTACAATGTCACAAAGCAGATGCGTTGCAAAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034610.4 |