Pregenerated sensors for PATE3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094995Ensembl transcript IDs: ENSMUST00000178236.3
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACAGAGACTAGGAGTCTTGTGTTTACTATGCCCTGTGAATATGTGTaGGCATGTACTTTAGTTACCAAGAAAATCAGAATGACTGAGTCT | + |
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Preference number: 1 (lower is better) Translates to: TETRSLVFTMPCEYV*ACTLVTKKIRMTES Trigger: AGACTCAGTCATTCTGATTTTCTTGGTAACTAAAGTACATGCTCACACATATTCACAGGGCATAGTAAACACAAGACTCCTAGTCTCTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| 3UTR CCA 90 bp | CACATCTTAATTACTGTTCAGAGTTTCTTGGGACAGGTCCTTTTGTaGATAAAGATGCCAATTCTAGTACTAGGAGAAATCTATTGTTTA | + |
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Preference number: 1 (lower is better) Translates to: HILITVQSFLGQVLL*IKMPILVLGEIYCL Trigger: TAAACAATAGATTTCTCCTAGTACTAGAATTGGCATCTTTATCCACAAAAGGACCTGTCCCAAGAAACTCTGAACAGTAATTAAGATGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| 3UTR-3UTR TCA 90 bp | GAGGATAAAGCTGTCCATGAGTATAACTCATTTATACCACAAAAGAGGATCTCTAGGAACCAGGAAGATTaGTGGGGATGGAACAGGAGT | + |
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Preference number: 2 (lower is better) Translates to: EDKAVHEYNSFIPQKRISRNQED*WGWNRS Trigger: ACTCCTGTTCCATCCCCATCAATCTTCCTGGTTCCT...AGAGATCCTCTTTTGTGGTATAAATGAGTTATACTCATGGACAGCTTTATCCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| 3UTR-3UTR CCA 90 bp | GGACAGCCTACTTTTATTGGGAGAGTGCATATAGCAATGCATGGTGAAGAGATGGGACAGGTCCTTTTGTaGATAAAGATGCCAATTCTA | + |
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Preference number: 2 (lower is better) Translates to: GQPTFIGRVHIAMHGEEMGQVLL*IKMPIL Trigger: TAGAATTGGCATCTTTATCCACAAAAGGACCTGTCC...CATCTCTTCACCATGCATTGCTATATGCACTCTCCCAATAAAAGTAGGCTGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| 3UTR-3UTR GCA 90 bp | ATTTATACCACAAAAGAGGATCTCTTAAAAGCTGTTTGCTCTGGGATATACAGCGTCTTGTGTTTACTATaGCCTGTGAATATGTGTGAG | + |
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Preference number: 2 (lower is better) Translates to: IYTTKEDLLKAVCSGIYSVLCLL*PVNMCE Trigger: CTCACACATATTCACAGGGCATAGTAAACACAAGAC...GCTGTATATCCCAGAGCAAACAGCTTTTAAGAGATCCTCTTTTGTGGTATAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| 3UTR CAA 90 bp | ATGCCAATTCTAGTACTAGGAGAAATCTATTGTTTAAAACCATCATaGCCTGCTCAACTTGAGATCCAAGATAAAGGAACCAGGAAGATT | + |
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Preference number: 2 (lower is better) Translates to: MPILVLGEIYCLKPS*PAQLEIQDKGTRKI Trigger: AATCTTCCTGGTTCCTTTATCTTGGATCTCAAGTTGAGCAGGCAATGATGGTTTTAAACAATAGATTTCTCCTAGTACTAGAATTGGCAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| 3UTR CCA 72 bp | AAGCTGTTTGCTCTGGGATATACAGCTCAGGGGCCATaGGGCATATTGGATAAAGATTTGAAGGACAGCCTA | + |
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Preference number: 3 (lower is better) Translates to: KLFALGYTAQGP*GILDKDLKDSL Trigger: TAGGCTGTCCTTCAAATCTTTATCCAATATGCCCCATGGCCCCTGAGCTGTATATCCCAGAGCAAACAGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| 3UTR CCA 72 bp | GTACATTATGTACTCTACATGTTGACCTTAGGCTCATaGGGATACCCTGGGGAGGATAAAGCTGTCCATGAG | + |
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Preference number: 3 (lower is better) Translates to: VHYVLYMLTLGS*GYPGEDKAVHE Trigger: CTCATGGACAGCTTTATCCTCCCCAGGGTATCCCCATGAGCCTAAGGTCAACATGTAGAGTACATAATGTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| 3UTR TCA 72 bp | TACTTTTATTGGGAGAGTGCATATAGCAATGCATGGTaGAGAGATGGCTGGAAAAGGATGAAAGGGATGGAG | + |
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Preference number: 3 (lower is better) Translates to: YFYWESAYSNAW*RDGWKRMKGME Trigger: CTCCATCCCTTTCATCCTTTTCCAGCCATCTCTTCACCATGCATTGCTATATGCACTCTCCCAATAAAAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| 3UTR-3UTR CAA 90 bp | TACCACAAAAGAGGATCTCTTAAAAGCTGTTTGCTCTGGGATATACAGCTCAGGCCAAAGGAAACAACTTaGCATTCACAGAGCAAAACC | + |
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Preference number: 3 (lower is better) Translates to: YHKRGSLKSCLLWDIQLRPKETT*HSQSKT Trigger: GGTTTTGCTCTGTGAATGCAAAGTTGTTTCCTTTGG...CCTGAGCTGTATATCCCAGAGCAAACAGCTTTTAAGAGATCCTCTTTTGTGGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| 3UTR-3UTR CAA 90 bp | TACCACAAAAGAGGATCTCTTAAAAGCTGTTTGCTCTGGGATATACAGCTCAGGGTGTTTACCTCCATTTaGTCTTATTTCTGCTTAACC | + |
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Preference number: 3 (lower is better) Translates to: YHKRGSLKSCLLWDIQLRVFTSI*SYFCLT Trigger: GGTTAAGCAGAAATAAGACAAAATGGAGGTAAACAC...CCTGAGCTGTATATCCCAGAGCAAACAGCTTTTAAGAGATCCTCTTTTGTGGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| 3UTR GCA 72 bp | GTTACCAAGAAAATCAGAATGACTGAGTCTGAAAGGTaGACCAAAGGAAACAACTTTGCATTCACAGAGCAA | + |
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Preference number: 3 (lower is better) Translates to: VTKKIRMTESER*TKGNNFAFTEQ Trigger: TTGCTCTGTGAATGCAAAGTTGTTTCCTTTGGTGCACCTTTCAGACTCAGTCATTCTGATTTTCTTGGTAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| CDS-3UTR GCA 90 bp | GGACAGCCTACTTTTATTGGGAGAGTGCATATAGCAATGCATGGTGAAGAGATGAGTGGTCTGACTGTGTaGGAAGGTGGCATGTTACAC | + |
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Preference number: 4 (lower is better) Translates to: GQPTFIGRVHIAMHGEEMSGLTV*EGGMLH Trigger: GTGTAACATGCCACCTTCGCACACAGTCAGACCACT...CATCTCTTCACCATGCATTGCTATATGCACTCTCCCAATAAAAGTAGGCTGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| CDS-3UTR GCA 90 bp | GAGGATAAAGCTGTCCATGAGTATAACTCATTTATACCACAAAAGAGGATCTCTCACCAAAGCCTCTTCTaGAGTGGTCTGACTGTGTGC | + |
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Preference number: 4 (lower is better) Translates to: EDKAVHEYNSFIPQKRISHQSLF*SGLTVC Trigger: GCACACAGTCAGACCACTGCAGAAGAGGCTTTGGTG...AGAGATCCTCTTTTGTGGTATAAATGAGTTATACTCATGGACAGCTTTATCCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| CDS-3UTR CCA 90 bp | CATCTTAATTACTGTTCAGAGTTTCTTGGGACAGGTCCTTTTGTGGATAAAGATAAGCCTCTTCTGCAGTaGTCTGACTGTGTGCGAAGG | + |
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Preference number: 4 (lower is better) Translates to: HLNYCSEFLGTGPFVDKDKPLLQ*SDCVRR Trigger: CCTTCGCACACAGTCAGACCACTGCAGAAGAGGCTT...ATCTTTATCCACAAAAGGACCTGTCCCAAGAAACTCTGAACAGTAATTAAGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| CDS-3UTR CCA 90 bp | TTAATTACTGTTCAGAGTTTCTTGGGACAGGTCCTTTTGTGGATAAAGATGCCAGACTGTGTGCGAAGGTaGCATGTTACACACTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: LITVQSFLGQVLLWIKMPDCVRR*HVTHFS Trigger: ACTGAAGTGTGTAACATGCCACCTTCGCACACAGTC...TGGCATCTTTATCCACAAAAGGACCTGTCCCAAGAAACTCTGAACAGTAATTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| 3UTR CAA 72 bp | TTATTTAATCTGGGACTGCCACAGAGACTAGGAGTCTaGTGTTTACTATGCCCTGTGAATATGTGTGAGCAT | + |
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Preference number: 4 (lower is better) Translates to: LFNLGLPQRLGV*CLLCPVNMCEH Trigger: ATGCTCACACATATTCACAGGGCATAGTAAACACAAGACTCCTAGTCTCTGTGGCAGTCCCAGATTAAATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| CDS-3UTR TCA 90 bp | TACCACAAAAGAGGATCTCTTAAAAGCTGTTTGCTCTGGGATATACAGCTCAGGTTCTTGCAGAATCTCTaGCACACCATGTATGATAAC | + |
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Preference number: 4 (lower is better) Translates to: YHKRGSLKSCLLWDIQLRFLQNL*HTMYDN Trigger: GTTATCATACATGGTGTGTCAGAGATTCTGCAAGAA...CCTGAGCTGTATATCCCAGAGCAAACAGCTTTTAAGAGATCCTCTTTTGTGGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| CDS-3UTR GCA 90 bp | GGACAGCCTACTTTTATTGGGAGAGTGCATATAGCAATGCATGGTGAAGAGATGTGTATGTCAAATTCTTaGAGAATCTCTGACACACCA | + |
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Preference number: 4 (lower is better) Translates to: GQPTFIGRVHIAMHGEEMCMSNS*RISDTP Trigger: TGGTGTGTCAGAGATTCTGCAAGAATTTGACATACA...CATCTCTTCACCATGCATTGCTATATGCACTCTCCCAATAAAAGTAGGCTGTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| 3UTR CAA 72 bp | CTAGTACTAGGAGAAATCTATTGTTTAAAACCATCATaGCCTGCTCAACTTGAGATCCAAGATAAAGGAACC | + |
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Preference number: 4 (lower is better) Translates to: LVLGEIYCLKPS*PAQLEIQDKGT Trigger: GGTTCCTTTATCTTGGATCTCAAGTTGAGCAGGCAATGATGGTTTTAAACAATAGATTTCTCCTAGTACTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| 3UTR CAA 72 bp | TTAATTACTGTTCAGAGTTTCTTGGGACAGGTCCTTTaGTGGATAAAGATGCCAATTCTAGTACTAGGAGAA | + |
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Preference number: 4 (lower is better) Translates to: LITVQSFLGQVL*WIKMPILVLGE Trigger: TTCTCCTAGTACTAGAATTGGCATCTTTATCCACAAAAGGACCTGTCCCAAGAAACTCTGAACAGTAATTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| CDS-3UTR GCA 90 bp | TCTAAGCTAATGAAGTGTGCAAGGGTCATTCCATTTCACATCTTAATTACTGTTAGATCCTCAAGCTCATaGATATTTCATGCTTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: SKLMKCARVIPFHILITVRSSSS*IFHASE Trigger: CTCAGAAGCATGAAATATGCATGAGCTTGAGGATCT...AACAGTAATTAAGATGTGAAATGGAATGACCCTTGCACACTTCATTAGCTTAGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| CDS TCA 90 bp | TGCAGAATCTCTGACACACCATGTATGATAACTGGAGAGAGCCACTaGAGTAGATCCTCAAGCTCATGCATATTTCATGCTTCTGAGCAA | + |
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Preference number: 5 (lower is better) Translates to: CRISDTPCMITGESH*SRSSSSCIFHASEQ Trigger: TTGCTCAGAAGCATGAAATATGCATGAGCTTGAGGATCTACTTCAGTGGCTCTCTCCAGTTATCATACATGGTGTGTCAGAGATTCTGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| CDS GCA 72 bp | AAACACCAAAGCCTCTTCTGCAGTGGTCTGACTGTGTaGGAAGGTGGCATGTTACACACTTCAGTGATGTTG | + |
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Preference number: 6 (lower is better) Translates to: KHQSLFCSGLTV*EGGMLHTSVML Trigger: CAACATCACTGAAGTGTGTAACATGCCACCTTCGCACACAGTCAGACCACTGCAGAAGAGGCTTTGGTGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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| CDS TCA 72 bp | TCTGACACACCATGTATGATAACTGGAGAGAGCCACTaGAGTAGATCCTCAAGCTCATGCATATTTCATGCT | + |
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Preference number: 6 (lower is better) Translates to: SDTPCMITGESH*SRSSSSCIFHA Trigger: AGCATGAAATATGCATGAGCTTGAGGATCTACTTCAGTGGCTCTCTCCAGTTATCATACATGGTGTGTCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178236.3 |
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