Pregenerated sensors for PATE2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074452Ensembl transcript IDs: ENSMUST00000098906.9, ENSMUST00000118254.2, ENSMUST00000217565.2
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATATCTCTGATTCTGTCACCTGCCTTTGGGACCCTTTTCTCCTACTaGCTGTCTTGTCTTGGCCTCAATAAGAGAGGATGTGCAAAGTCT | + |
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Preference number: 1 (lower is better) Translates to: ISLILSPAFGTLFSY*LSCLGLNKRGCAKS Trigger: AGACTTTGCACATCCTCTCTTATTGAGGCCAAGACAAGACAGGCAGTAGGAGAAAAGGGTCCCAAAGGCAGGTGACAGAATCAGAGATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR TCA 90 bp | TGGGATGTCATTTTGAGCCAAAATCTTGTGGCTTGGTATATGAGATaGTCAATTCTGGACCTACTCATGATGGGCAGTATTGTCCACAGA | + |
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Preference number: 1 (lower is better) Translates to: WDVILSQNLVAWYMR*SILDLLMMGSIVHR Trigger: TCTGTGGACAATACTGCCCATCATGAGTAGGTCCAGAATTGATCATCTCATATACCAAGCCACAAGATTTTGGCTCAAAATGACATCCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR TCA 90 bp | TGCCTCGTGGACGTGTCTGTGGAGAACAATCTTGATTATTCTTATTaGCATAAGAGGGTCCAGACCACTGTTGATAGTACCATTTCAAGA | + |
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Preference number: 1 (lower is better) Translates to: CLVDVSVENNLDYSY*HKRVQTTVDSTISR Trigger: TCTTGAAATGGTACTATCAACAGTGGTCTGGACCCTCTTATGTCAATAAGAATAATCAAGATTGTTCTCCACAGACACGTCCACGAGGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR TCA 90 bp | GATTCTTGGGTACAGATTTCCTGCTATGGTCAAAACTTCTTGAATTaGGTGATTGCTGTCATTCTCAACCCGCAAGGAACAGGTTACATT | + |
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Preference number: 1 (lower is better) Translates to: DSWVQISCYGQNFLN*VIAVILNPQGTGYI Trigger: AATGTAACCTGTTCCTTGCGGGTTGAGAATGACAGCAATCACTCAATTCAAGAAGTTTTGACCATAGCAGGAAATCTGTACCCAAGAATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| 3UTR GCA 90 bp | ATTCTCAGAGCTAGTCCAAACAAAATCTTAACTCAGAAGACTTGGTaGAGACCAACACAGTATATTTACAGATTTCCCTGTACAAAGTTG | + |
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Preference number: 1 (lower is better) Translates to: ILRASPNKILTQKTW*RPTQYIYRFPCTKL Trigger: CAACTTTGTACAGGGAAATCTGTAAATATACTGTGTTGGTCTGCACCAAGTCTTCTGAGTTAAGATTTTGTTTGGACTAGCTCTGAGAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR CCA 90 bp | AGAATTCTCAGAGCTAGTCCAAACAAAATCTTAACTCAGAAGACTTaGTGCAGACCAACACAGTATATTTACAGATTTCCCTGTACAAAG | + |
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Preference number: 1 (lower is better) Translates to: RILRASPNKILTQKT*CRPTQYIYRFPCTK Trigger: CTTTGTACAGGGAAATCTGTAAATATACTGTGTTGGTCTGCACCAAGTCTTCTGAGTTAAGATTTTGTTTGGACTAGCTCTGAGAATTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR GCA 90 bp | TGCCTAGAGATATCTCTGATTCTGTCACCTGCCTTTGGGACCCTTTTCTCCTACTCCCTCTATGAGTCCTaGCTCCAGGTTCCTACCTTG | + |
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Preference number: 2 (lower is better) Translates to: CLEISLILSPAFGTLFSYSLYES*LQVPTL Trigger: CAAGGTAGGAACCTGGAGGCAGGACTCATAGAGGGA...GTAGGAGAAAAGGGTCCCAAAGGCAGGTGACAGAATCAGAGATATCTCTAGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR TCA 90 bp | CTAGAGATATCTCTGATTCTGTCACCTGCCTTTGGGACCCTTTTCTCCTACTGCGCTTGGTATATGAGATaGTCAATTCTGGACCTACTC | + |
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Preference number: 2 (lower is better) Translates to: LEISLILSPAFGTLFSYCAWYMR*SILDLL Trigger: GAGTAGGTCCAGAATTGATCATCTCATATACCAAGC...GCAGTAGGAGAAAAGGGTCCCAAAGGCAGGTGACAGAATCAGAGATATCTCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR TCA 90 bp | TGCCTAGAGATATCTCTGATTCTGTCACCTGCCTTTGGGACCCTTTTCTCCTACATCCAATCACCTGATTaGACCACAGCCTCAATACAA | + |
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Preference number: 2 (lower is better) Translates to: CLEISLILSPAFGTLFSYIQSPD*TTASIQ Trigger: TTGTATTGAGGCTGTGGTTCAATCAGGTGATTGGAT...GTAGGAGAAAAGGGTCCCAAAGGCAGGTGACAGAATCAGAGATATCTCTAGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR TCA 90 bp | TGGGAAGCTGGGATTAACACTCTCTTACCTCCTGAATCCATAAGTACTGTGCCAGTTGGGATGTCATTTTaGGCCAAAATCTTGTGGCTT | + |
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Preference number: 2 (lower is better) Translates to: WEAGINTLLPPESISTVPVGMSF*AKILWL Trigger: AAGCCACAAGATTTTGGCTCAAAATGACATCCCAAC...TGGCACAGTACTTATGGATTCAGGAGGTAAGAGAGTGTTAATCCCAGCTTCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR TCA 90 bp | TGCCTAGAGATATCTCTGATTCTGTCACCTGCCTTTGGGACCCTTTTCTCCTACCTTGATTATTCTTATTaGCATAAGAGGGTCCAGACC | + |
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Preference number: 2 (lower is better) Translates to: CLEISLILSPAFGTLFSYLDYSY*HKRVQT Trigger: GGTCTGGACCCTCTTATGTCAATAAGAATAATCAAG...GTAGGAGAAAAGGGTCCCAAAGGCAGGTGACAGAATCAGAGATATCTCTAGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR CCA 90 bp | CTAGAGATATCTCTGATTCTGTCACCTGCCTTTGGGACCCTTTTCTCCTACTGCTTCCCTGTACAAAGTTaGGATGTCATTTTGAGCCAA | + |
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Preference number: 2 (lower is better) Translates to: LEISLILSPAFGTLFSYCFPVQS*DVILSQ Trigger: TTGGCTCAAAATGACATCCCAACTTTGTACAGGGAA...GCAGTAGGAGAAAAGGGTCCCAAAGGCAGGTGACAGAATCAGAGATATCTCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR CAA 90 bp | CCCTGTACAAAGTTGGGATGTCATTTTGAGCCAAAATCTTGTGGCTaGGTATATGAGATGATCAATTCTGGACCTACTCATGATGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: PCTKLGCHFEPKSCG*VYEMINSGPTHDGQ Trigger: CTGCCCATCATGAGTAGGTCCAGAATTGATCATCTCATATACCAAGCCACAAGATTTTGGCTCAAAATGACATCCCAACTTTGTACAGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR CAA 90 bp | CATAAGAGGGTCCAGACCACTGTTGATAGTACCATTTCAAGACAGTaGGTCCTGTATTGTATGAGAAAGCAAGCTAAGCATAAGCCTGTG | + |
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Preference number: 2 (lower is better) Translates to: HKRVQTTVDSTISRQ*VLYCMRKQAKHKPV Trigger: CACAGGCTTATGCTTAGCTTGCTTTCTCATACAATACAGGACCAACTGTCTTGAAATGGTACTATCAACAGTGGTCTGGACCCTCTTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR CAA 90 bp | TGTCTACTTGACACAACCTACAGGGATATGACCTCAATTAAAAAGTaGCCTAGAGATATCTCTGATTCTGTCACCTGCCTTTGGGACCCT | + |
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Preference number: 2 (lower is better) Translates to: CLLDTTYRDMTSIKK*PRDISDSVTCLWDP Trigger: AGGGTCCCAAAGGCAGGTGACAGAATCAGAGATATCTCTAGGCAACTTTTTAATTGAGGTCATATCCCTGTAGGTTGTGTCAAGTAGACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR TCA 90 bp | ATAGGCTTCCAAACCAGAGAAACGTGGTTACCGTCTGCCTATCTTGCCCCAATAGAGTTGGTAGTAAGTTaGAGAATGATACCAAATCCA | + |
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Preference number: 2 (lower is better) Translates to: IGFQTRETWLPSAYLAPIELVVS*RMIPNP Trigger: TGGATTTGGTATCATTCTTCAACTTACTACCAACTC...TATTGGGGCAAGATAGGCAGACGGTAACCACGTTTCTCTGGTTTGGAAGCCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR GCA 90 bp | TGGGAAGCTGGGATTAACACTCTCTTACCTCCTGAATCCATAAGTACTGTGCCAACTCAGAAGACTTGGTaGAGACCAACACAGTATATT | + |
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Preference number: 2 (lower is better) Translates to: WEAGINTLLPPESISTVPTQKTW*RPTQYI Trigger: AATATACTGTGTTGGTCTGCACCAAGTCTTCTGAGT...TGGCACAGTACTTATGGATTCAGGAGGTAAGAGAGTGTTAATCCCAGCTTCCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR GCA 90 bp | CTAGAGATATCTCTGATTCTGTCACCTGCCTTTGGGACCCTTTTCTCCTACTGCGCATCACACTGTCTCTaGATCAATGAAAATTTCCAT | + |
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Preference number: 2 (lower is better) Translates to: LEISLILSPAFGTLFSYCASHCL*INENFH Trigger: ATGGAAATTTTCATTGATGCAGAGACAGTGTGATGC...GCAGTAGGAGAAAAGGGTCCCAAAGGCAGGTGACAGAATCAGAGATATCTCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR CCA 90 bp | ATAGGCTTCCAAACCAGAGAAACGTGGTTACCGTCTGCCTATCTTGCCCCAATATTTCCTACCCTCAGTTaGTATTGGTCAAAGTGTTTT | + |
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Preference number: 2 (lower is better) Translates to: IGFQTRETWLPSAYLAPIFPTLS*YWSKCF Trigger: AAAACACTTTGACCAATACCAACTGAGGGTAGGAAA...TATTGGGGCAAGATAGGCAGACGGTAACCACGTTTCTCTGGTTTGGAAGCCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR GCA 90 bp | CTTCATAACTTTAACTACTGTGGCACACAGTATTACCCAAACACCATATCATGTACCCTTTTCTCCTACTaGCTGTCTTGTCTTGGCCTC | + |
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Preference number: 2 (lower is better) Translates to: LHNFNYCGTQYYPNTISCTLFSY*LSCLGL Trigger: GAGGCCAAGACAAGACAGGCAGTAGGAGAAAAGGGT...ACATGATATGGTGTTTGGGTAATACTGTGTGCCACAGTAGTTAAAGTTATGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR CAA 90 bp | TGTCTAGATCAAATTGCCTCGTGGACGTGTCTGTGGAGAACAATCTaGATTATTCTTATTGACATAAGAGGGTCCAGACCACTGTTGATA | + |
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Preference number: 2 (lower is better) Translates to: CLDQIASWTCLWRTI*IILIDIRGSRPLLI Trigger: TATCAACAGTGGTCTGGACCCTCTTATGTCAATAAGAATAATCAAGATTGTTCTCCACAGACACGTCCACGAGGCAATTTGATCTAGACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR TCA 90 bp | TCCTACCCTCAGTTGGTATTGGTCAAAGTGTTTTATCACAGCAACATAAAGGAACCTAATCCAATCACCTaGTTGAACCACAGCCTCAAT | + |
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Preference number: 2 (lower is better) Translates to: SYPQLVLVKVFYHSNIKEPNPIT*LNHSLN Trigger: ATTGAGGCTGTGGTTCAATCAGGTGATTGGATTAGG...TTCCTTTATGTTGCTGTGATAAAACACTTTGACCAATACCAACTGAGGGTAGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR TCA 90 bp | CTTGACACAACCTACAGGGATATGACCTCAATTAAAAAGTTGCCTAGAGATATCCTAAGCATAAGCCTGTaGCAAGCATTGTCCCTCTAT | + |
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Preference number: 2 (lower is better) Translates to: LDTTYRDMTSIKKLPRDILSISL*QALSLY Trigger: ATAGAGGGACAATGCTTGTCACAGGCTTATGCTTAG...GATATCTCTAGGCAACTTTTTAATTGAGGTCATATCCCTGTAGGTTGTGTCAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR GCA 90 bp | TCGTGGACGTGTCTGTGGAGAACAATCTTGATTATTCTTATTGACATAAGAGGGACAATCAGATCCAGATaGATCACACTGTCTCTGCAT | + |
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Preference number: 2 (lower is better) Translates to: SWTCLWRTILIILIDIRGTIRSR*ITLSLH Trigger: ATGCAGAGACAGTGTGATGCATCTGGATCTGATTGT...CCCTCTTATGTCAATAAGAATAATCAAGATTGTTCTCCACAGACACGTCCACGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR CAA 90 bp | TGGTGCAGACCAACACAGTATATTTACAGATTTCCCTGTACAAAGTaGGGATGTCATTTTGAGCCAAAATCTTGTGGCTTGGTATATGAG | + |
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Preference number: 2 (lower is better) Translates to: WCRPTQYIYRFPCTK*GCHFEPKSCGLVYE Trigger: CTCATATACCAAGCCACAAGATTTTGGCTCAAAATGACATCCCAACTTTGTACAGGGAAATCTGTAAATATACTGTGTTGGTCTGCACCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR GCA 90 bp | TCGTGGACGTGTCTGTGGAGAACAATCTTGATTATTCTTATTGACATAAGAGGGGTCCACAGATCAAAATaGCCTGCTAGATATGACAAA | + |
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Preference number: 2 (lower is better) Translates to: SWTCLWRTILIILIDIRGVHRSK*PARYDK Trigger: TTTGTCATATCTAGCAGGGCATTTTGATCTGTGGAC...CCCTCTTATGTCAATAAGAATAATCAAGATTGTTCTCCACAGACACGTCCACGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR GCA 90 bp | CTGTGCTGTTCTGGTTTTGTTTATACCTTGGTACTTGATCATGTAATAACTGTATCTGATTCTGTCACCTaGCTTTGGGACCCTTTTCTC | + |
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Preference number: 2 (lower is better) Translates to: LCCSGFVYTLVLDHVITVSDSVT*LWDPFL Trigger: GAGAAAAGGGTCCCAAAGGCAGGTGACAGAATCAGA...TACAGTTATTACATGATCAAGTACCAAGGTATAAACAAAACCAGAACAGCACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR TCA 90 bp | TTTCCCCTCTTACTAATGTTACCTTTCTATTCTGTCACACTTTCTGCTCTTCATAGCCAGTTTCTCATATaGCTGCTTCTCTTTTCACTG | + |
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Preference number: 2 (lower is better) Translates to: FPLLLMLPFYSVTLSALHSQFLI*LLLFSL Trigger: CAGTGAAAAGAGAAGCAGTCATATGAGAAACTGGCT...ATGAAGAGCAGAAAGTGTGACAGAATAGAAAGGTAACATTAGTAAGAGGGGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR GCA 90 bp | CTTGACACAACCTACAGGGATATGACCTCAATTAAAAAGTTGCCTAGAGATATCGAATTTGCAAAGATTTaGTTAGCAATGAGGCTGAGC | + |
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Preference number: 2 (lower is better) Translates to: LDTTYRDMTSIKKLPRDIEFAKI*LAMRLS Trigger: GCTCAGCCTCATTGCTAAGCAAATCTTTGCAAATTC...GATATCTCTAGGCAACTTTTTAATTGAGGTCATATCCCTGTAGGTTGTGTCAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR CCA 90 bp | GTAATGAGGCTATATTTGATTGTCCCTCACATCACCAAAGGATTTTTACCTCCATGTAGGCAAGATTCTTaGGTACAGATTTCCTGCTAT | + |
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Preference number: 2 (lower is better) Translates to: VMRLYLIVPHITKGFLPPCRQDS*VQISCY Trigger: ATAGCAGGAAATCTGTACCCAAGAATCTTGCCTACA...TGGAGGTAAAAATCCTTTGGTGATGTGAGGGACAATCAAATATAGCCTCATTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| 3UTR-3UTR CCA 90 bp | CTTGACACAACCTACAGGGATATGACCTCAATTAAAAAGTTGCCTAGAGATATCTCGTGGACGTGTCTGTaGAGAACAATCTTGATTATT | + |
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Preference number: 2 (lower is better) Translates to: LDTTYRDMTSIKKLPRDISWTCL*RTILII Trigger: AATAATCAAGATTGTTCTCCACAGACACGTCCACGA...GATATCTCTAGGCAACTTTTTAATTGAGGTCATATCCCTGTAGGTTGTGTCAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR CCA 90 bp | CTCTTCATAACTTTAACTACTGTGGCACACAGTATTACCCAAACACCATATCATTTTTCTGAAGATAAATaGAGGAGGAGTGAATGGGGG | + |
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Preference number: 2 (lower is better) Translates to: LFITLTTVAHSITQTPYHFSEDK*RRSEWG Trigger: CCCCCATTCACTCCTCCTCCATTTATCTTCAGAAAA...ATGATATGGTGTTTGGGTAATACTGTGTGCCACAGTAGTTAAAGTTATGAAGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR TCA 90 bp | CATCACCAAAGGATTTTTACCTCCATGGTAGATAAGCTAAAAGCTGACAGTTCTCAAAACTTCTTGAATTaGGTGATTGCTGTCATTCTC | + |
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Preference number: 2 (lower is better) Translates to: HHQRIFTSMVDKLKADSSQNFLN*VIAVIL Trigger: GAGAATGACAGCAATCACTCAATTCAAGAAGTTTTG...AGAACTGTCAGCTTTTAGCTTATCTACCATGGAGGTAAAAATCCTTTGGTGATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| 3UTR-3UTR CCA 90 bp | CTTCATAACTTTAACTACTGTGGCACACAGTATTACCCAAACACCATATCATGTAGATCATTAGCAAATTaGGAAGCTGGGATTAACACT | + |
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Preference number: 2 (lower is better) Translates to: LHNFNYCGTQYYPNTISCRSLAN*EAGINT Trigger: AGTGTTAATCCCAGCTTCCCAATTTGCTAATGATCT...ACATGATATGGTGTTTGGGTAATACTGTGTGCCACAGTAGTTAAAGTTATGAAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR CCA 72 bp | TTGCCTAGAGATATCTCTGATTCTGTCACCTGCCTTTaGGACCCTTTTCTCCTACTGCCTGTCTTGTCTTGG | + |
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Preference number: 3 (lower is better) Translates to: LPRDISDSVTCL*DPFLLLPVLSW Trigger: CCAAGACAAGACAGGCAGTAGGAGAAAAGGGTCCCAAAGGCAGGTGACAGAATCAGAGATATCTCTAGGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR CAA 90 bp | ATAGGCTTCCAAACCAGAGAAACGTGGTTACCGTCTGCCTATCTTGCCCCAATATTTCCCTGTACAAAGTaGGGATGTCATTTTGAGCCA | + |
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Preference number: 3 (lower is better) Translates to: IGFQTRETWLPSAYLAPIFPCTK*GCHFEP Trigger: TGGCTCAAAATGACATCCCAACTTTGTACAGGGAAA...TATTGGGGCAAGATAGGCAGACGGTAACCACGTTTCTCTGGTTTGGAAGCCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR GCA 72 bp | AAAAAGTTGCCTAGAGATATCTCTGATTCTGTCACCTaGCTTTGGGACCCTTTTCTCCTACTGCCTGTCTTG | + |
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Preference number: 3 (lower is better) Translates to: KKLPRDISDSVT*LWDPFLLLPVL Trigger: CAAGACAGGCAGTAGGAGAAAAGGGTCCCAAAGGCAGGTGACAGAATCAGAGATATCTCTAGGCAACTTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR CCA 72 bp | CTGCTGCGCCAAGGAATGAACTGTAGGCAAGATTCTTaGGTACAGATTTCCTGCTATGGTCAAAACTTCTTG | + |
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Preference number: 3 (lower is better) Translates to: LLRQGMNCRQDS*VQISCYGQNFL Trigger: CAAGAAGTTTTGACCATAGCAGGAAATCTGTACCCAAGAATCTTGCCTACAGTTCATTCCTTGGCGCAGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| 3UTR CCA 72 bp | ACAGGAATTGCAATAGGCTTCCAAACCAGAGAAACGTaGTTACCGTCTGCCTATCTTGCCCCAATATGTGAT | + |
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Preference number: 3 (lower is better) Translates to: TGIAIGFQTRET*LPSAYLAPICD Trigger: ATCACATATTGGGGCAAGATAGGCAGACGGTAACCACGTTTCTCTGGTTTGGAAGCCTATTGCAATTCCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR CAA 90 bp | TGGGAAGCTGGGATTAACACTCTCTTACCTCCTGAATCCATAAGTACTGTGCCAAGTTGGGATGTCATTTaGAGCCAAAATCTTGTGGCT | + |
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Preference number: 3 (lower is better) Translates to: WEAGINTLLPPESISTVPSWDVI*SQNLVA Trigger: AGCCACAAGATTTTGGCTCAAAATGACATCCCAACT...TGGCACAGTACTTATGGATTCAGGAGGTAAGAGAGTGTTAATCCCAGCTTCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR CAA 90 bp | CTTGACACAACCTACAGGGATATGACCTCAATTAAAAAGTTGCCTAGAGATATCTTCTGTCACCTGCCTTaGGGACCCTTTTCTCCTACT | + |
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Preference number: 3 (lower is better) Translates to: LDTTYRDMTSIKKLPRDIFCHLP*GPFSPT Trigger: AGTAGGAGAAAAGGGTCCCAAAGGCAGGTGACAGAA...GATATCTCTAGGCAACTTTTTAATTGAGGTCATATCCCTGTAGGTTGTGTCAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR GCA 72 bp | CCTATCTTGCCCCAATATGTGATGCTCCAGTGTCTGTaGTGTTCTGGTTTTGTTTATACCTTGGTACTTGAT | + |
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Preference number: 3 (lower is better) Translates to: PILPQYVMLQCL*CSGFVYTLVLD Trigger: ATCAAGTACCAAGGTATAAACAAAACCAGAACAGCACAGACACTGGAGCATCACATATTGGGGCAAGATAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR CAA 90 bp | CTTTCTATTCTGTCACACTTTCTGCTCTTCATAACTTTAACTACTGTGGCACACGGGTCCAGACCACTGTaGATAGTACCATTTCAAGAC | + |
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Preference number: 3 (lower is better) Translates to: LSILSHFLLFITLTTVAHGSRPL*IVPFQD Trigger: GTCTTGAAATGGTACTATCAACAGTGGTCTGGACCC...GTGTGCCACAGTAGTTAAAGTTATGAAGAGCAGAAAGTGTGACAGAATAGAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR TCA 72 bp | GTACAGATTTCCTGCTATGGTCAAAACTTCTTGAATTaGGTGATTGCTGTCATTCTCAACCCGCAAGGAACA | + |
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Preference number: 3 (lower is better) Translates to: VQISCYGQNFLN*VIAVILNPQGT Trigger: TGTTCCTTGCGGGTTGAGAATGACAGCAATCACTCAATTCAAGAAGTTTTGACCATAGCAGGAAATCTGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| 3UTR GCA 72 bp | TTCCTGCTATGGTCAAAACTTCTTGAATTGAGTGATTaGTGTCATTCTCAACCCGCAAGGAACAGGTTACAT | + |
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Preference number: 3 (lower is better) Translates to: FLLWSKLLELSD*CHSQPARNRLH Trigger: ATGTAACCTGTTCCTTGCGGGTTGAGAATGACAGCAATCACTCAATTCAAGAAGTTTTGACCATAGCAGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| 3UTR-3UTR CAA 90 bp | CTTGACACAACCTACAGGGATATGACCTCAATTAAAAAGTTGCCTAGAGATATCCTTTCCTACCCTCAGTaGGTATTGGTCAAAGTGTTT | + |
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Preference number: 3 (lower is better) Translates to: LDTTYRDMTSIKKLPRDILSYPQ*VLVKVF Trigger: AAACACTTTGACCAATACCAACTGAGGGTAGGAAAG...GATATCTCTAGGCAACTTTTTAATTGAGGTCATATCCCTGTAGGTTGTGTCAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR TCA 72 bp | ATTTTGAGCCAAAATCTTGTGGCTTGGTATATGAGATaGTCAATTCTGGACCTACTCATGATGGGCAGTATT | + |
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Preference number: 3 (lower is better) Translates to: ILSQNLVAWYMR*SILDLLMMGSI Trigger: AATACTGCCCATCATGAGTAGGTCCAGAATTGATCATCTCATATACCAAGCCACAAGATTTTGGCTCAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR GCA 72 bp | CTACTCATGATGGGCAGTATTGTCCACAGATCAAAATaGCCTGCTAGATATGACAAAAAGAATTTGCAAAGA | + |
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Preference number: 3 (lower is better) Translates to: LLMMGSIVHRSK*PARYDKKNLQR Trigger: TCTTTGCAAATTCTTTTTGTCATATCTAGCAGGGCATTTTGATCTGTGGACAATACTGCCCATCATGAGTAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR GCA 72 bp | GCTAGTCCAAACAAAATCTTAACTCAGAAGACTTGGTaGAGACCAACACAGTATATTTACAGATTTCCCTGT | + |
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Preference number: 3 (lower is better) Translates to: ASPNKILTQKTW*RPTQYIYRFPC Trigger: ACAGGGAAATCTGTAAATATACTGTGTTGGTCTGCACCAAGTCTTCTGAGTTAAGATTTTGTTTGGACTAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR CCA 72 bp | AGAGCTAGTCCAAACAAAATCTTAACTCAGAAGACTTaGTGCAGACCAACACAGTATATTTACAGATTTCCC | + |
|
Preference number: 3 (lower is better) Translates to: RASPNKILTQKT*CRPTQYIYRFP Trigger: GGGAAATCTGTAAATATACTGTGTTGGTCTGCACCAAGTCTTCTGAGTTAAGATTTTGTTTGGACTAGCTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR CCA 72 bp | AGTTGTCTAGATCAAATTGCCTCGTGGACGTGTCTGTaGAGAACAATCTTGATTATTCTTATTGACATAAGA | + |
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Preference number: 3 (lower is better) Translates to: SCLDQIASWTCL*RTILIILIDIR Trigger: TCTTATGTCAATAAGAATAATCAAGATTGTTCTCCACAGACACGTCCACGAGGCAATTTGATCTAGACAACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR-3UTR CAA 90 bp | CTCTTCATAACTTTAACTACTGTGGCACACAGTATTACCCAAACACCATATCATAGAGTTGGTAGTAAGTaGAAGAATGATACCAAATCC | + |
|
Preference number: 3 (lower is better) Translates to: LFITLTTVAHSITQTPYHRVGSK*KNDTKS Trigger: GGATTTGGTATCATTCTTCAACTTACTACCAACTCT...ATGATATGGTGTTTGGGTAATACTGTGTGCCACAGTAGTTAAAGTTATGAAGAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR TCA 72 bp | TCTGTGCTGTTCTGGTTTTGTTTATACCTTGGTACTTaGTCATGTAATAACTGTATGTTTCCCCTCTTACTA | + |
|
Preference number: 3 (lower is better) Translates to: SVLFWFCLYLGT*SCNNCMFPLLL Trigger: TAGTAAGAGGGGAAACATACAGTTATTACATGATCAAGTACCAAGGTATAAACAAAACCAGAACAGCACAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR CAA 72 bp | TCCAAACCAGAGAAACGTGGTTACCGTCTGCCTATCTaGCCCCAATATGTGATGCTCCAGTGTCTGTGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: SKPEKRGYRLPI*PQYVMLQCLCC Trigger: ACAGCACAGACACTGGAGCATCACATATTGGGGCAAGATAGGCAGACGGTAACCACGTTTCTCTGGTTTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| CDS-3UTR TCA 90 bp | TGGTCAAAACTTCTTGAATTGAGTGATTGCTGTCATTCTCAACCCGCAAGGAACTGGGTCACTTCCAGGTaGTGTCTCTGGAGACCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: WSKLLELSDCCHSQPARNWVTSR*CLWRPA Trigger: AGCTGGTCTCCAGAGACATCACCTGGAAGTGACCCA...GTTCCTTGCGGGTTGAGAATGACAGCAATCACTCAATTCAAGAAGTTTTGACCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS-3UTR TCA 90 bp | ATAGGCTTCCAAACCAGAGAAACGTGGTTACCGTCTGCCTATCTTGCCCCAATAGTACGCAGGATGTCATaGTTCCATAGCATAACCCAA | + |
|
Preference number: 4 (lower is better) Translates to: IGFQTRETWLPSAYLAPIVRRMS*FHSITQ Trigger: TTGGGTTATGCTATGGAATCATGACATCCTGCGTAC...TATTGGGGCAAGATAGGCAGACGGTAACCACGTTTCTCTGGTTTGGAAGCCTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR CAA 72 bp | CCTTTGGGACCCTTTTCTCCTACTGCCTGTCTTGTCTaGGCCTCAATAAGAGAGGATGTGCAAAGTCTTACT | + |
|
Preference number: 4 (lower is better) Translates to: PLGPFSPTACLV*ASIREDVQSLT Trigger: AGTAAGACTTTGCACATCCTCTCTTATTGAGGCCAAGACAAGACAGGCAGTAGGAGAAAAGGGTCCCAAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| CDS-3UTR CCA 90 bp | ATTCTGGACCTACTCATGATGGGCAGTATTGTCCACAGATCAAAATGCCCTGCTAGGACACCCCAATATTaGCAGAACAGACAGATCATC | + |
|
Preference number: 4 (lower is better) Translates to: ILDLLMMGSIVHRSKCPARTPQY*QNRQII Trigger: GATGATCTGTCTGTTCTGCCAATATTGGGGTGTCCT...AGCAGGGCATTTTGATCTGTGGACAATACTGCCCATCATGAGTAGGTCCAGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| 3UTR CAA 72 bp | GCCCTGCTAGATATGACAAAAAGAATTTGCAAAGATTaGCTTAGCAATGAGGCTGAGCTCCCAGCCAGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: ALLDMTKRICKD*LSNEAELPASF Trigger: GAAACTGGCTGGGAGCTCAGCCTCATTGCTAAGCAAATCTTTGCAAATTCTTTTTGTCATATCTAGCAGGGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| CDS-3UTR TCA 90 bp | CATCACCAAAGGATTTTTACCTCCATGGTAGATAAGCTAAAAGCTGACAGTTCTGGCTCCAGGAACAAATaGGCTCTGTCCTCCTTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: HHQRIFTSMVDKLKADSSGSRNK*ALSSFQ Trigger: TTGAAAGGAGGACAGAGCTCATTTGTTCCTGGAGCC...AGAACTGTCAGCTTTTAGCTTATCTACCATGGAGGTAAAAATCCTTTGGTGATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS-3UTR TCA 90 bp | TGCTGTCATTCTCAACCCGCAAGGAACAGGTTACATTCATTTAAGAAATGGTGTGCCCAAGGTTTTGCATaGATGGCTCCAGGAACAAAT | + |
|
Preference number: 4 (lower is better) Translates to: CCHSQPARNRLHSFKKWCAQGFA*MAPGTN Trigger: ATTTGTTCCTGGAGCCATTCATGCAAAACCTTGGGC...ACACCATTTCTTAAATGAATGTAACCTGTTCCTTGCGGGTTGAGAATGACAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS-3UTR GCA 90 bp | AAACTTCTTGAATTGAGTGATTGCTGTCATTCTCAACCCGCAAGGAACAGGTTAATCTGCCCAAGGTTTTaGATGAATGGCTCCAGGAAC | + |
|
Preference number: 4 (lower is better) Translates to: KLLELSDCCHSQPARNRLICPRF*MNGSRN Trigger: GTTCCTGGAGCCATTCATGCAAAACCTTGGGCAGAT...TAACCTGTTCCTTGCGGGTTGAGAATGACAGCAATCACTCAATTCAAGAAGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| 3UTR CAA 72 bp | GGTACAGATTTCCTGCTATGGTCAAAACTTCTTGAATaGAGTGATTGCTGTCATTCTCAACCCGCAAGGAAC | + |
|
Preference number: 4 (lower is better) Translates to: GTDFLLWSKLLE*SDCCHSQPARN Trigger: GTTCCTTGCGGGTTGAGAATGACAGCAATCACTCAATTCAAGAAGTTTTGACCATAGCAGGAAATCTGTACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS-3UTR CCA 90 bp | ATGAGGCTATATTTGATTGTCCCTCACATCACCAAAGGATTTTTACCTCCATGGAGGACACCCCAATATTaGCAGAACAGACAGATCATC | + |
|
Preference number: 4 (lower is better) Translates to: MRLYLIVPHITKGFLPPWRTPQY*QNRQII Trigger: GATGATCTGTCTGTTCTGCCAATATTGGGGTGTCCT...CCATGGAGGTAAAAATCCTTTGGTGATGTGAGGGACAATCAAATATAGCCTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS-3UTR CCA 90 bp | ATGAGGCTATATTTGATTGTCCCTCACATCACCAAAGGATTTTTACCTCCATGGTCTCTGGAGACCAGCTaGTTGGTAATGAAAGCCAAT | + |
|
Preference number: 4 (lower is better) Translates to: MRLYLIVPHITKGFLPPWSLETS*LVMKAN Trigger: ATTGGCTTTCATTACCAACCAGCTGGTCTCCAGAGA...CCATGGAGGTAAAAATCCTTTGGTGATGTGAGGGACAATCAAATATAGCCTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS-3UTR TCA 90 bp | ATTCTCAACCCGCAAGGAACAGGTTACATTCATTTAAGAAATGGTGTGTGTAGTCAAAACTCAGGAAGTTaGTGTCCTCACAGTTGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: ILNPQGTGYIHLRNGVCSQNSGS*CPHSWS Trigger: TGACCAACTGTGAGGACATCAACTTCCTGAGTTTTG...ACTACACACACCATTTCTTAAATGAATGTAACCTGTTCCTTGCGGGTTGAGAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS-3UTR CCA 90 bp | ATGAGGCTATATTTGATTGTCCCTCACATCACCAAAGGATTTTTACCTCCATGGAAGGTTTTGCATGAATaGCTCCAGGAACAAATGAGC | + |
|
Preference number: 4 (lower is better) Translates to: MRLYLIVPHITKGFLPPWKVLHE*LQEQMS Trigger: GCTCATTTGTTCCTGGAGCCATTCATGCAAAACCTT...CCATGGAGGTAAAAATCCTTTGGTGATGTGAGGGACAATCAAATATAGCCTCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS-3UTR TCA 90 bp | TCCTACCCTCAGTTGGTATTGGTCAAAGTGTTTTATCACAGCAACATAAAGGAATGTGCTTACAACAAATaGGCTCTGTCCTCCTTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: SYPQLVLVKVFYHSNIKECAYNK*ALSSFQ Trigger: TTGAAAGGAGGACAGAGCTCATTTGTTGTAAGCACA...TTCCTTTATGTTGCTGTGATAAAACACTTTGACCAATACCAACTGAGGGTAGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| CDS-3UTR TCA 90 bp | CAAGGAACAGGTTACATTCATTTAAGAAATGGTGTGTGTAGTACGATGATCAATGTACGCAGGATGTCATaGTTCCATAGCATAACCCAA | + |
|
Preference number: 4 (lower is better) Translates to: QGTGYIHLRNGVCSTMINVRRMS*FHSITQ Trigger: TTGGGTTATGCTATGGAATCATGACATCCTGCGTAC...ATTGATCATCGTACTACACACACCATTTCTTAAATGAATGTAACCTGTTCCTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS-3UTR TCA 90 bp | TCCAAACAAAATCTTAACTCAGAAGACTTGGTGCAGACCAACACAGTATATTTACAAAACTCAGGAAGTTaGTGTCCTCACAGTTGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: SKQNLNSEDLVQTNTVYLQNSGS*CPHSWS Trigger: TGACCAACTGTGAGGACATCAACTTCCTGAGTTTTG...TAAATATACTGTGTTGGTCTGCACCAAGTCTTCTGAGTTAAGATTTTGTTTGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| CDS-3UTR GCA 90 bp | GATTGTCCCTCACATCACCAAAGGATTTTTACCTCCATGGTAGATAAGCTAAAACAATCTCTGTGTATCTaGCCAAGGTTTTGCATGAAT | + |
|
Preference number: 4 (lower is better) Translates to: DCPSHHQRIFTSMVDKLKQSLCI*PRFCMN Trigger: ATTCATGCAAAACCTTGGGCAGATACACAGAGATTG...TTTTAGCTTATCTACCATGGAGGTAAAAATCCTTTGGTGATGTGAGGGACAATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS-3UTR CAA 90 bp | ATAGGCTTCCAAACCAGAGAAACGTGGTTACCGTCTGCCTATCTTGCCCCAATAAAGGACACCCCAATATaGGCAGAACAGACAGATCAT | + |
|
Preference number: 5 (lower is better) Translates to: IGFQTRETWLPSAYLAPIKDTPI*AEQTDH Trigger: ATGATCTGTCTGTTCTGCCAATATTGGGGTGTCCTT...TATTGGGGCAAGATAGGCAGACGGTAACCACGTTTCTCTGGTTTGGAAGCCTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| CDS-3UTR CAA 90 bp | TGGTCAAAACTTCTTGAATTGAGTGATTGCTGTCATTCTCAACCCGCAAGGAACCTGGAGACCAGCTGGTaGGTAATGAAAGCCAATCTC | + |
|
Preference number: 5 (lower is better) Translates to: WSKLLELSDCCHSQPARNLETSW*VMKANL Trigger: GAGATTGGCTTTCATTACCAACCAGCTGGTCTCCAG...GTTCCTTGCGGGTTGAGAATGACAGCAATCACTCAATTCAAGAAGTTTTGACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS-3UTR CAA 90 bp | ATGAGGCTATATTTGATTGTCCCTCACATCACCAAAGGATTTTTACCTCCATGGAAGGACACCCCAATATaGGCAGAACAGACAGATCAT | + |
|
Preference number: 5 (lower is better) Translates to: MRLYLIVPHITKGFLPPWKDTPI*AEQTDH Trigger: ATGATCTGTCTGTTCTGCCAATATTGGGGTGTCCTT...CCATGGAGGTAAAAATCCTTTGGTGATGTGAGGGACAATCAAATATAGCCTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS-3UTR CAA 90 bp | AATGAGGCTATATTTGATTGTCCCTCACATCACCAAAGGATTTTTACCTCCATGTATCTGCCCAAGGTTTaGCATGAATGGCTCCAGGAA | + |
|
Preference number: 5 (lower is better) Translates to: NEAIFDCPSHHQRIFTSMYLPKV*HEWLQE Trigger: TTCCTGGAGCCATTCATGCAAAACCTTGGGCAGATA...CATGGAGGTAAAAATCCTTTGGTGATGTGAGGGACAATCAAATATAGCCTCATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS-3UTR CAA 90 bp | AACCCGCAAGGAACAGGTTACATTCATTTAAGAAATGGTGTGTGTAGTACGATGTTGATGTCCTCACAGTaGGTCATACATGACAGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: NPQGTGYIHLRNGVCSTMLMSSQ*VIHDSL Trigger: AAGACTGTCATGTATGACCAACTGTGAGGACATCAA...CATCGTACTACACACACCATTTCTTAAATGAATGTAACCTGTTCCTTGCGGGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS-3UTR CAA 90 bp | CATCACCAAAGGATTTTTACCTCCATGGTAGATAAGCTAAAAGCTGACAGTTCTTCAAAACTCAGGAAGTaGATGTCCTCACAGTTGGTC | + |
|
Preference number: 5 (lower is better) Translates to: HHQRIFTSMVDKLKADSSSKLRK*MSSQLV Trigger: GACCAACTGTGAGGACATCAACTTCCTGAGTTTTGA...AGAACTGTCAGCTTTTAGCTTATCTACCATGGAGGTAAAAATCCTTTGGTGATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS TCA 90 bp | TCTCAGCAGCGCAGGTCTGTCTATGATTTGGTACGCAGGATGTCATaGTTCCATAGCATAACCCAAGATGATATTTCTTACATTTATAAC | + |
|
Preference number: 5 (lower is better) Translates to: SQQRRSVYDLVRRMS*FHSITQDDISYIYN Trigger: GTTATAAATGTAAGAAATATCATCTTGGGTTATGCTATGGAATCATGACATCCTGCGTACCAAATCATAGACAGACCTGCGCTGCTGAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098906.9 ENSMUST00000118254.2 ENSMUST00000217565.2 |
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| CDS-3UTR CAA 90 bp | CTGTGCTGTTCTGGTTTTGTTTATACCTTGGTACTTGATCATGTAATAACTGTATTGATGTCCTCACAGTaGGTCATACATGACAGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: LCCSGFVYTLVLDHVITVLMSSQ*VIHDSL Trigger: AAGACTGTCATGTATGACCAACTGTGAGGACATCAA...TACAGTTATTACATGATCAAGTACCAAGGTATAAACAAAACCAGAACAGCACAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118254.2 |
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| CDS CAA 72 bp | GGTCACTTCCAGGTGATGTCTCTGGAGACCAGCTGGTaGGTAATGAAAGCCAATCTCTGTGTATCTGCCCAA | + |
|
Preference number: 6 (lower is better) Translates to: GHFQVMSLETSW*VMKANLCVSAQ Trigger: TTGGGCAGATACACAGAGATTGGCTTTCATTACCAACCAGCTGGTCTCCAGAGACATCACCTGGAAGTGACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS CCA 72 bp | CCAATCTCTGTGTATCTGCCCAAGGTTTTGCATGAATaGCTCCAGGAACAAATGAGCTCTGTCCTCCTTTCA | + |
|
Preference number: 6 (lower is better) Translates to: PISVYLPKVLHE*LQEQMSSVLLS Trigger: TGAAAGGAGGACAGAGCTCATTTGTTCCTGGAGCCATTCATGCAAAACCTTGGGCAGATACACAGAGATTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098906.9 |
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| CDS CAA 72 bp | CAAATGAGCTCTGTCCTCCTTTCAAAACTCAGGAAGTaGATGTCCTCACAGTTGGTCATACATGACAGTCTT | + |
|
Preference number: 6 (lower is better) Translates to: QMSSVLLSKLRK*MSSQLVIHDSL Trigger: AAGACTGTCATGTATGACCAACTGTGAGGACATCAACTTCCTGAGTTTTGAAAGGAGGACAGAGCTCATTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098906.9 ENSMUST00000118254.2 ENSMUST00000217565.2 |
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| CDS TCA 72 bp | CGCAGGTCTGTCTATGATTTGGTACGCAGGATGTCATaGTTCCATAGCATAACCCAAGATGATATTTCTTAC | + |
|
Preference number: 6 (lower is better) Translates to: RRSVYDLVRRMS*FHSITQDDISY Trigger: GTAAGAAATATCATCTTGGGTTATGCTATGGAATCATGACATCCTGCGTACCAAATCATAGACAGACCTGCG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098906.9 ENSMUST00000118254.2 ENSMUST00000217565.2 |
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