Pregenerated sensors for PATE14 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070313Ensembl transcript IDs: ENSMUST00000093868.9, ENSMUST00000184611.2
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGCATATTGTACAATGAAATCCATTTAATGAGGCATAGAATGCATTaGAAGGTACCCAACAGAAAACAGAAGTATACATATAGCATGGGT | + |
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Preference number: 1 (lower is better) Translates to: CILYNEIHLMRHRMH*KVPNRKQKYTYSMG Trigger: ACCCATGCTATATGTATACTTCTGTTTTCTGTTGGGTACCTTGCAATGCATTCTATGCCTCATTAAATGGATTTCATTGTACAATATGCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| 3UTR TCA 72 bp | GAAGGCTTGATGACCTGCTCCAGTGGCATGATGCAATaGATATCTCTAAGTAGAATAGGGAGGGCAGGTAAG | + |
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Preference number: 3 (lower is better) Translates to: EGLMTCSSGMMQ*ISLSRIGRAGK Trigger: CTTACCTGCCCTCCCTATTCTACTTAGAGATATTCATTGCATCATGCCACTGGAGCAGGTCATCAAGCCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093868.9 |
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| CDS-3UTR TCA 90 bp | GAAATCCATTTAATGAGGCATAGAATGCATTGCAAGGTACCCAACAGAAAACAGTCAACCTTCCACAGCTaGCACATGTCAGAGCTTGCA | + |
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Preference number: 4 (lower is better) Translates to: EIHLMRHRMHCKVPNRKQSTFHS*HMSELA Trigger: TGCAAGCTCTGACATGTGTCAGCTGTGGAAGGTTGA...CTGTTTTCTGTTGGGTACCTTGCAATGCATTCTATGCCTCATTAAATGGATTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS-3UTR GCA 90 bp | GGCATAGAATGCATTGCAAGGTACCCAACAGAAAACAGAAGTATACATATAGCAACACATGTCAGAGCTTaGAGAAAGCCCACCCGCAAA | + |
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Preference number: 4 (lower is better) Translates to: GIECIARYPTENRSIHIATHVRA*RKPTRK Trigger: TTTGCGGGTGGGCTTTCTGCAAGCTCTGACATGTGT...TGCTATATGTATACTTCTGTTTTCTGTTGGGTACCTTGCAATGCATTCTATGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS-3UTR TCA 90 bp | TACAATGAAATCCATTTAATGAGGCATAGAATGCATTGCAAGGTACCCAACAGATCAACCTTCCACAGCTaGCACATGTCAGAGCTTGCA | + |
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Preference number: 4 (lower is better) Translates to: YNEIHLMRHRMHCKVPNRSTFHS*HMSELA Trigger: TGCAAGCTCTGACATGTGTCAGCTGTGGAAGGTTGA...TCTGTTGGGTACCTTGCAATGCATTCTATGCCTCATTAAATGGATTTCATTGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS-3UTR GCA 90 bp | GGCATAGAATGCATTGCAAGGTACCCAACAGAAAACAGAAGTATACATATAGCACCACCCGCAAAAAGATaGCCAAGAGTAGCAACAAGA | + |
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Preference number: 4 (lower is better) Translates to: GIECIARYPTENRSIHIAPPAKR*PRVATR Trigger: TCTTGTTGCTACTCTTGGGCATCTTTTTGCGGGTGG...TGCTATATGTATACTTCTGTTTTCTGTTGGGTACCTTGCAATGCATTCTATGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS-3UTR GCA 90 bp | TACAATGAAATCCATTTAATGAGGCATAGAATGCATTGCAAGGTACCCAACAGAACACATGTCAGAGCTTaGAGAAAGCCCACCCGCAAA | + |
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Preference number: 4 (lower is better) Translates to: YNEIHLMRHRMHCKVPNRTHVRA*RKPTRK Trigger: TTTGCGGGTGGGCTTTCTGCAAGCTCTGACATGTGT...TCTGTTGGGTACCTTGCAATGCATTCTATGCCTCATTAAATGGATTTCATTGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS-3UTR TCA 90 bp | GGCATAGAATGCATTGCAAGGTACCCAACAGAAAACAGAAGTATACATATAGCACCTGCTCCAGTGGCATaGTGCAATGAATATCTCATA | + |
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Preference number: 4 (lower is better) Translates to: GIECIARYPTENRSIHIAPAPVA*CNEYLI Trigger: TATGAGATATTCATTGCATCATGCCACTGGAGCAGG...TGCTATATGTATACTTCTGTTTTCTGTTGGGTACCTTGCAATGCATTCTATGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184611.2 |
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| CDS-3UTR GCA 90 bp | AGGTACCCAACAGAAAACAGAAGTATACATATAGCATGGGTACACTACTTTGGTTTCACAGGAGGTTTCTaGTGTCTCACAAATCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: RYPTENRSIHIAWVHYFGFTGGF*CLTNPR Trigger: TCTGGGATTTGTGAGACAGCAGAAACCTCCTGTGAA...ACCAAAGTAGTGTACCCATGCTATATGTATACTTCTGTTTTCTGTTGGGTACCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS-3UTR GCA 90 bp | CCCAACAGAAAACAGAAGTATACATATAGCATGGGTACACTACTTTGGTATATTCCACCCGCAAAAAGATaGCCAAGAGTAGCAACAAGA | + |
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Preference number: 4 (lower is better) Translates to: PNRKQKYTYSMGTLLWYIPPAKR*PRVATR Trigger: TCTTGTTGCTACTCTTGGGCATCTTTTTGCGGGTGG...AATATACCAAAGTAGTGTACCCATGCTATATGTATACTTCTGTTTTCTGTTGGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS-3UTR CCA 90 bp | AAGGTACCCAACAGAAAACAGAAGTATACATATAGCATGGGTACACTACTTTGGGTTCCAAGACATCCCTaGAAGCCATATTGGAATTTG | + |
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Preference number: 4 (lower is better) Translates to: KVPNRKQKYTYSMGTLLWVPRHP*KPYWNL Trigger: CAAATTCCAATATGGCTTCCAGGGATGTCTTGGAAC...CCAAAGTAGTGTACCCATGCTATATGTATACTTCTGTTTTCTGTTGGGTACCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS-3UTR TCA 90 bp | AGGCATAGAATGCATTGCAAGGTACCCAACAGAAAACAGAAGTATACATATAGCTGGTCTTGGTATAATTaGAGCATGTTCCAAGACATC | + |
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Preference number: 4 (lower is better) Translates to: RHRMHCKVPNRKQKYTYSWSWYN*SMFQDI Trigger: GATGTCTTGGAACATGCTTCAATTATACCAAGACCA...GCTATATGTATACTTCTGTTTTCTGTTGGGTACCTTGCAATGCATTCTATGCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS-3UTR TCA 90 bp | TACAATGAAATCCATTTAATGAGGCATAGAATGCATTGCAAGGTACCCAACAGATGGTCTTGGTATAATTaGAGCATGTTCCAAGACATC | + |
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Preference number: 4 (lower is better) Translates to: YNEIHLMRHRMHCKVPNRWSWYN*SMFQDI Trigger: GATGTCTTGGAACATGCTTCAATTATACCAAGACCA...TCTGTTGGGTACCTTGCAATGCATTCTATGCCTCATTAAATGGATTTCATTGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS-3UTR GCA 90 bp | GGCATAGAATGCATTGCAAGGTACCCAACAGAAAACAGAAGTATACATATAGCAAGCCATATTGGAATTTaGCATCTTTATAGAGTAGCC | + |
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Preference number: 4 (lower is better) Translates to: GIECIARYPTENRSIHIASHIGI*HLYRVA Trigger: GGCTACTCTATAAAGATGGCAAATTCCAATATGGCT...TGCTATATGTATACTTCTGTTTTCTGTTGGGTACCTTGCAATGCATTCTATGCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS-3UTR GCA 90 bp | AGGTACCCAACAGAAAACAGAAGTATACATATAGCATGGGTACACTACTTTGGTAGCCATATTGGAATTTaGCATCTTTATAGAGTAGCC | + |
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Preference number: 4 (lower is better) Translates to: RYPTENRSIHIAWVHYFGSHIGI*HLYRVA Trigger: GGCTACTCTATAAAGATGGCAAATTCCAATATGGCT...ACCAAAGTAGTGTACCCATGCTATATGTATACTTCTGTTTTCTGTTGGGTACCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS-3UTR CCA 90 bp | CCCAACAGAAAACAGAAGTATACATATAGCATGGGTACACTACTTTGGTATATTGTTCCAAGACATCCCTaGAAGCCATATTGGAATTTG | + |
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Preference number: 4 (lower is better) Translates to: PNRKQKYTYSMGTLLWYIVPRHP*KPYWNL Trigger: CAAATTCCAATATGGCTTCCAGGGATGTCTTGGAAC...AATATACCAAAGTAGTGTACCCATGCTATATGTATACTTCTGTTTTCTGTTGGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS-3UTR CAA 90 bp | GAAATCCATTTAATGAGGCATAGAATGCATTGCAAGGTACCCAACAGAAAACAGGACACATGTCAGAGCTaGCAGAAAGCCCACCCGCAA | + |
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Preference number: 5 (lower is better) Translates to: EIHLMRHRMHCKVPNRKQDTCQS*QKAHPQ Trigger: TTGCGGGTGGGCTTTCTGCAAGCTCTGACATGTGTC...CTGTTTTCTGTTGGGTACCTTGCAATGCATTCTATGCCTCATTAAATGGATTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS-3UTR CAA 90 bp | AGGCATAGAATGCATTGCAAGGTACCCAACAGAAAACAGAAGTATACATATAGCGACACATGTCAGAGCTaGCAGAAAGCCCACCCGCAA | + |
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Preference number: 5 (lower is better) Translates to: RHRMHCKVPNRKQKYTYSDTCQS*QKAHPQ Trigger: TTGCGGGTGGGCTTTCTGCAAGCTCTGACATGTGTC...GCTATATGTATACTTCTGTTTTCTGTTGGGTACCTTGCAATGCATTCTATGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS TCA 90 bp | CATGATGCAATGAATATCTCATATTATTGTTGGTCTTGGTATAATTaGAGCATGTTCCAAGACATCCCTGGAAGCCATATTGGAATTTGC | + |
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Preference number: 5 (lower is better) Translates to: HDAMNISYYCWSWYN*SMFQDIPGSHIGIC Trigger: GCAAATTCCAATATGGCTTCCAGGGATGTCTTGGAACATGCTTCAATTATACCAAGACCAACAATAATATGAGATATTCATTGCATCATG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184611.2 |
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| CDS TCA 90 bp | AACATTTATGTTCCTTTACCATATTATTGTTGGTCTTGGTATAATTaGAGCATGTTCCAAGACATCCCTGGAAGCCATATTGGAATTTGC | + |
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Preference number: 5 (lower is better) Translates to: NIYVPLPYYCWSWYN*SMFQDIPGSHIGIC Trigger: GCAAATTCCAATATGGCTTCCAGGGATGTCTTGGAACATGCTTCAATTATACCAAGACCAACAATAATATGGTAAAGGAACATAAATGTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093868.9 |
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| CDS TCA 72 bp | TCTCACAAATCCCAGAAGAGTTCAACCTTCCACAGCTaGCACATGTCAGAGCTTGCAGAAAGCCCACCCGCA | + |
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Preference number: 6 (lower is better) Translates to: SHKSQKSSTFHS*HMSELAESPPA Trigger: TGCGGGTGGGCTTTCTGCAAGCTCTGACATGTGTCAGCTGTGGAAGGTTGAACTCTTCTGGGATTTGTGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS CAA 72 bp | AGAGTTCAACCTTCCACAGCTGACACATGTCAGAGCTaGCAGAAAGCCCACCCGCAAAAAGATGCCCAAGAG | + |
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Preference number: 6 (lower is better) Translates to: RVQPSTADTCQS*QKAHPQKDAQE Trigger: CTCTTGGGCATCTTTTTGCGGGTGGGCTTTCTGCAAGCTCTGACATGTGTCAGCTGTGGAAGGTTGAACTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS GCA 72 bp | ACACTTCCTATTATTTGTAGCTTCACAGGAGGTTTCTaGTGTCTCACAAATCCCAGAAGAGTTCAACCTTCC | + |
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Preference number: 6 (lower is better) Translates to: TLPIICSFTGGF*CLTNPRRVQPS Trigger: GGAAGGTTGAACTCTTCTGGGATTTGTGAGACAGCAGAAACCTCCTGTGAAGCTACAAATAATAGGAAGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS GCA 72 bp | ATGTTCCAAGACATCCCTGGAAGCCATATTGGAATTTaGCATCTTTATAGAGTAGCCGTAAAGCACACTTCC | + |
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Preference number: 6 (lower is better) Translates to: MFQDIPGSHIGI*HLYRVAVKHTS Trigger: GGAAGTGTGCTTTACGGCTACTCTATAAAGATGGCAAATTCCAATATGGCTTCCAGGGATGTCTTGGAACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093868.9 ENSMUST00000184611.2 |
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| CDS TCA 72 bp | GTTCCTTTACCATATTATTGTTGGTCTTGGTATAATTaGAGCATGTTCCAAGACATCCCTGGAAGCCATATT | + |
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Preference number: 6 (lower is better) Translates to: VPLPYYCWSWYN*SMFQDIPGSHI Trigger: AATATGGCTTCCAGGGATGTCTTGGAACATGCTTCAATTATACCAAGACCAACAATAATATGGTAAAGGAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093868.9 |
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