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Pregenerated sensors for PATE13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078934

Ensembl transcript IDs: ENSMUST00000176049.2, ENSMUST00000176153.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCAGCTCTGAGTAACACAAACCCTCCCTCTACATCTTTTACCCTATaGCAGTCATTCCTCTGGAAATATTATTCCTTGGACCTGTTTCTA +
Preference number: 1 (lower is better)
Translates to: PALSNTNPPSTSFTL*QSFLWKYYSLDLFL
Trigger: TAGAAACAGGTCCAAGGAATAATATTTCCAGAGGAATGACTGGCATAGGGTAAAAGATGTAGAGGGAGGGTTTGTGTTACTCAGAGCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176049.2
3UTR CCA 90 bp TTTCATCTTGACATGTTTTTCTTTGACTATGAGAGCATAGTAAAGTaGATAGAAATACCATGGCCAAGAGGTGAGTGTACAGGAATAGCT +
Preference number: 1 (lower is better)
Translates to: FHLDMFFFDYESIVK*IEIPWPRGECTGIA
Trigger: AGCTATTCCTGTACACTCACCTCTTGGCCATGGTATTTCTATCCACTTTACTATGCTCTCATAGTCAAAGAAAAACATGTCAAGATGAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176049.2
3UTR CAA 90 bp TGGAAATATTATTCCTTGGACCTGTTTCTATGTAGGCTGATTTCCTaGGTCCTCAACATGAAGATCTATCAGAAAAATGTCCCTTTTTGC +
Preference number: 2 (lower is better)
Translates to: WKYYSLDLFLCRLIS*VLNMKIYQKNVPFC
Trigger: GCAAAAAGGGACATTTTTCTGATAGATCTTCATGTTGAGGACCAAGGAAATCAGCCTACATAGAAACAGGTCCAAGGAATAATATTTCCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000176049.2
3UTR-3UTR CCA 90 bp GATTTCCCCCAAATGGTGGTAGGCATTAGAACTTCATCAAATATACTGACTATTGGAAATATTATTCCTTaGACCTGTTTCTATGTAGGC +
Preference number: 2 (lower is better)
Translates to: DFPQMVVGIRTSSNILTIGNIIP*TCFYVG
Trigger: GCCTACATAGAAACAGGTCCAAGGAATAATATTTCC...AATAGTCAGTATATTTGATGAAGTTCTAATGCCTACCACCATTTGGGGGAAATC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176049.2
3UTR CCA 72 bp GACTATGAGAGCATAGTAAAGTGGATAGAAATACCATaGCCAAGAGGTGAGTGTACAGGAATAGCTATGGCC +
Preference number: 3 (lower is better)
Translates to: DYESIVKWIEIP*PRGECTGIAMA
Trigger: GGCCATAGCTATTCCTGTACACTCACCTCTTGGCCATGGTATTTCTATCCACTTTACTATGCTCTCATAGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176049.2
3UTR TCA 72 bp AGAAAGCCTTCTAACTTTTCATTGTCTTTCCAGCTCTaGGTAACACAAACCCTCCCTCTACATCTTTTACCC +
Preference number: 3 (lower is better)
Translates to: RKPSNFSLSFQL*VTQTLPLHLLP
Trigger: GGGTAAAAGATGTAGAGGGAGGGTTTGTGTTACTCAGAGCTGGAAAGACAATGAAAAGTTAGAAGGCTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176049.2
CDS-3UTR TCA 90 bp CATCTTTTACCCTATGCCAGTCATTCCTCTGGAAATATTATTCCTTGGACCTGTAGGTCGTGGAACATTTaGTACATTCCAGGTGCACAG +
Preference number: 4 (lower is better)
Translates to: HLLPYASHSSGNIIPWTCRSWNI*YIPGAQ
Trigger: CTGTGCACCTGGAATGTATCAAATGTTCCACGACCT...ACAGGTCCAAGGAATAATATTTCCAGAGGAATGACTGGCATAGGGTAAAAGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176049.2
3UTR CAA 72 bp ACCCTATGCCAGTCATTCCTCTGGAAATATTATTCCTaGGACCTGTTTCTATGTAGGCTGATTTCCTTGGTC +
Preference number: 4 (lower is better)
Translates to: TLCQSFLWKYYS*DLFLCRLISLV
Trigger: GACCAAGGAAATCAGCCTACATAGAAACAGGTCCAAGGAATAATATTTCCAGAGGAATGACTGGCATAGGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176049.2
CDS TCA 72 bp CAGCAAAATGTTTCTCTCAGCAGGTCGTGGAACATTTaGTACATTCCAGGTGCACAGGGTTTACAATTAAGT +
Preference number: 6 (lower is better)
Translates to: QQNVSLSRSWNI*YIPGAQGLQLS
Trigger: ACTTAATTGTAAACCCTGTGCACCTGGAATGTATCAAATGTTCCACGACCTGCTGAGAGAAACATTTTGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176049.2
ENSMUST00000176153.2
CDS CAA 72 bp ACAGCAAAATGTTTCTCTCAGCAGGTCGTGGAACATTaGATACATTCCAGGTGCACAGGGTTTACAATTAAG +
Preference number: 6 (lower is better)
Translates to: TAKCFSQQVVEH*IHSRCTGFTIK
Trigger: CTTAATTGTAAACCCTGTGCACCTGGAATGTATCAAATGTTCCACGACCTGCTGAGAGAAACATTTTGCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176049.2
ENSMUST00000176153.2
CDS CAA 90 bp CCTGTCAATACAGCAAAATGTTTCTCTCAGCAGGTCGTGGAACATTaGATACATTCCAGGTGCACAGGGTTTACAATTAAGTTTGGCATA +
Preference number: 6 (lower is better)
Translates to: PVNTAKCFSQQVVEH*IHSRCTGFTIKFGI
Trigger: TATGCCAAACTTAATTGTAAACCCTGTGCACCTGGAATGTATCAAATGTTCCACGACCTGCTGAGAGAAACATTTTGCTGTATTGACAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176049.2
ENSMUST00000176153.2