Pregenerated sensors for PATE12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023093

Ensembl transcript IDs: ENSMUST00000041537.7

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 72 bp	AAATATAAATGTAGAAGGAAAAACGATCTAAGTACATaGTGTAGAATGCATCGTGAGGGCTTCAGTCATGGT	+
Preference number: 3 (lower is better) Translates to: KYKCRRKNDLST*CRMHREGFSHG Trigger: ACCATGACTGAAGCCCTCACGATGCATTCTACATCATGTACTTAGATCGTTTTTCCTTCTACATTTATATTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041537.7
CDS TCA 90 bp	ACAGTCCCAGTGAAGCAAATGTTAGCACATCTTTGGTTTCCAAACTaGATTTTGCCATCTTTAAGGGTTATGAGCGAGGCACATTTCTCT	+
Preference number: 5 (lower is better) Translates to: TVPVKQMLAHLWFPN*ILPSLRVMSEAHFS Trigger: AGAGAAATGTGCCTCGCTCATAACCCTTAAAGATGGCAAAATTCAGTTTGGAAACCAAAGATGTGCTAACATTTGCTTCACTGGGACTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041537.7
CDS TCA 90 bp	TCATTGCAGAAAGACCTTTTCTTGCAGCACTTCATTTTTACTGTTTaGTCTCCAGTCTGCACAGTCCCAGTGAAGCAAATGTTAGCACAT	+
Preference number: 5 (lower is better) Translates to: SLQKDLFLQHFIFTV*SPVCTVPVKQMLAH Trigger: ATGTGCTAACATTTGCTTCACTGGGACTGTGCAGACTGGAGATCAAACAGTAAAAATGAAGTGCTGCAAGAAAAGGTCTTTCTGCAATGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041537.7
CDS GCA 72 bp	GAATTGATCCTATCACACGTGATACATGTCAAAGCTTaGGAGGACATCACCAGCAAAGACAGGACCAGCAGG	+
Preference number: 6 (lower is better) Translates to: ELILSHVIHVKA*EDITSKDRTSR Trigger: CCTGCTGGTCCTGTCTTTGCTGGTGATGTCCTCGCAAGCTTTGACATGTATCACGTGTGATAGGATCAATTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041537.7
CDS CAA 90 bp	ATCTCCAGTCTGCACAGTCCCAGTGAAGCAAATGTTAGCACATCTTaGGTTTCCAAACTGAATTTTGCCATCTTTAAGGGTTATGAGCGA	+
Preference number: 6 (lower is better) Translates to: ISSLHSPSEANVSTS*VSKLNFAIFKGYER Trigger: TCGCTCATAACCCTTAAAGATGGCAAAATTCAGTTTGGAAACCAAAGATGTGCTAACATTTGCTTCACTGGGACTGTGCAGACTGGAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041537.7
CDS CAA 72 bp	GAAAGACCTTTTCTTGCAGCACTTCATTTTTACTGTTaGATCTCCAGTCTGCACAGTCCCAGTGAAGCAAAT	+
Preference number: 6 (lower is better) Translates to: ERPFLAALHFYC*ISSLHSPSEAN Trigger: ATTTGCTTCACTGGGACTGTGCAGACTGGAGATCAAACAGTAAAAATGAAGTGCTGCAAGAAAAGGTCTTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041537.7
CDS CAA 90 bp	TTCATTGCAGAAAGACCTTTTCTTGCAGCACTTCATTTTTACTGTTaGATCTCCAGTCTGCACAGTCCCAGTGAAGCAAATGTTAGCACA	+
Preference number: 6 (lower is better) Translates to: FIAERPFLAALHFYC*ISSLHSPSEANVST Trigger: TGTGCTAACATTTGCTTCACTGGGACTGTGCAGACTGGAGATCAAACAGTAAAAATGAAGTGCTGCAAGAAAAGGTCTTTCTGCAATGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041537.7
CDS TCA 72 bp	GTGAAGCAAATGTTAGCACATCTTTGGTTTCCAAACTaGATTTTGCCATCTTTAAGGGTTATGAGCGAGGCA	+
Preference number: 6 (lower is better) Translates to: VKQMLAHLWFPN*ILPSLRVMSEA Trigger: TGCCTCGCTCATAACCCTTAAAGATGGCAAAATTCAGTTTGGAAACCAAAGATGTGCTAACATTTGCTTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041537.7

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