Pregenerated sensors for PATE11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090710

Ensembl transcript IDs: ENSMUST00000165591.4

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TCTTTAAGGGTTATGAACGAGGCACACTTCTCTCCAGGTCTAGCCTaGCAGCAACCTTCTTTCCCCTCACAAATTCTCCGAGAATTCATC	+
Preference number: 5 (lower is better) Translates to: SLRVMNEAHFSPGLA*QQPSFPSQILREFI Trigger: GATGAATTCTCGGAGAATTTGTGAGGGGAAAGAAGGTTGCTGTCAGGCTAGACCTGGAGAGAAGTGTGCCTCGTTCATAACCCTTAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165591.4
CDS TCA 90 bp	CTTCTTTCCCCTCACAAATTCTCCGAGAATTCATCCTATCACATGTaGTACATGTCAAAGCTTGCAGGGACATCACCAGCAAAGACAGGA	+
Preference number: 5 (lower is better) Translates to: LLSPHKFSENSSYHM*YMSKLAGTSPAKTG Trigger: TCCTGTCTTTGCTGGTGATGTCCCTGCAAGCTTTGACATGTATCACATGTGATAGGATGAATTCTCGGAGAATTTGTGAGGGGAAAGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165591.4
CDS TCA 72 bp	GTTATGAACGAGGCACACTTCTCTCCAGGTCTAGCCTaGCAGCAACCTTCTTTCCCCTCACAAATTCTCCGA	+
Preference number: 6 (lower is better) Translates to: VMNEAHFSPGLA*QQPSFPSQILR Trigger: TCGGAGAATTTGTGAGGGGAAAGAAGGTTGCTGTCAGGCTAGACCTGGAGAGAAGTGTGCCTCGTTCATAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165591.4
CDS GCA 72 bp	GAATTCATCCTATCACATGTGATACATGTCAAAGCTTaGAGGGACATCACCAGCAAAGACAGGACCAGCAGG	+
Preference number: 6 (lower is better) Translates to: EFILSHVIHVKA*RDITSKDRTSR Trigger: CCTGCTGGTCCTGTCTTTGCTGGTGATGTCCCTGCAAGCTTTGACATGTATCACATGTGATAGGATGAATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165591.4

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