RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PASK (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026274

Ensembl transcript IDs: ENSMUST00000027493.4

Found 298 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGGAAGAACTGGGCATGGTGACACACACCATCAGTCCTAATGCTTaGGAGGCAAGCGCAGGCAGATCTGTCAGTTTAAGGTCTACCTGG +
Preference number: 1 (lower is better)
Translates to: QEELGMVTHTISPNA*EASAGRSVSLRSTW
Trigger: CCAGGTAGACCTTAAACTGACAGATCTGCCTGCGCTTGCCTCCCAAGCATTAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
3UTR TCA 90 bp GTGGGAAAGAAACCTACACACAAAACCAGGAAGAACTGGGCATGGTaGCACACACCATCAGTCCTAATGCTTGGGAGGCAAGCGCAGGCA +
Preference number: 1 (lower is better)
Translates to: VGKKPTHKTRKNWAW*HTPSVLMLGRQAQA
Trigger: TGCCTGCGCTTGCCTCCCAAGCATTAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTTCCTGGTTTTGTGTGTAGGTTTCTTTCCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
3UTR-3UTR TCA 90 bp ATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGTAGGAAAGTCAGGCAGTGGTaGCACACGCCTTTGATCCCA +
Preference number: 2 (lower is better)
Translates to: MSLTSGNWVLETVTDTGRKVRQW*HTPLIP
Trigger: TGGGATCAAAGGCGTGTGTCACCACTGCCTGACTTT...CCTACCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
3UTR-3UTR CCA 90 bp CTGAATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGCATGTACCAAGTCAGTaGGAAAGAAACCTACACACA +
Preference number: 2 (lower is better)
Translates to: LNVTNFWELGPRNRHRHWHVPSQ*ERNLHT
Trigger: TGTGTGTAGGTTTCTTTCCCACTGACTTGGTACATG...CCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACATTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
3UTR-3UTR TCA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGAAGAACTGGGCATGGTaGCACACACCATCAGTCCTA +
Preference number: 2 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKKNWAW*HTPSVL
Trigger: TAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTT...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
3UTR-3UTR TCA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGCTCCTTGTGTCTTTCTaGGGCTTACAACTTAAAGCC +
Preference number: 2 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKLLVSF*GLQLKA
Trigger: GGCTTTAAGTTGTAAGCCTCAGAAAGACACAAGGAG...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
3UTR-3UTR TCA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACGCCAAAGTTACATGGTaGGATCCTGTCTCAAAAACT +
Preference number: 2 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDAKVTW*DPVSKT
Trigger: AGTTTTTGAGACAGGATCTCACCATGTAACTTTGGC...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
3UTR TCA 72 bp AGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTaGGTTCCAGGACGGCCAAGGCTACACAGAGAAACC +
Preference number: 3 (lower is better)
Translates to: RFLSSRPAWSTK*VPGRPRLHRET
Trigger: GGTTTCTCTGTGTAGCCTTGGCCGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
3UTR TCA 72 bp AAACCTACACACAAAACCAGGAAGAACTGGGCATGGTaGCACACACCATCAGTCCTAATGCTTGGGAGGCAA +
Preference number: 3 (lower is better)
Translates to: KPTHKTRKNWAW*HTPSVLMLGRQ
Trigger: TTGCCTCCCAAGCATTAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTTCCTGGTTTTGTGTGTAGGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
3UTR CCA 72 bp CCATACATCTGTCACATGTCACATGTACCAAGTCAGTaGGAAAGAAACCTACACACAAAACCAGGAAGAACT +
Preference number: 3 (lower is better)
Translates to: PYICHMSHVPSQ*ERNLHTKPGRT
Trigger: AGTTCTTCCTGGTTTTGTGTGTAGGTTTCTTTCCCACTGACTTGGTACATGTGACATGTGACAGATGTATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
3UTR CCA 72 bp CTGGATTTTGTATCTTCAACCGGCTATACTCCTGTCTaGGGGAAAGAACAATTCTGCAATATCTTGTGTTTT +
Preference number: 3 (lower is better)
Translates to: LDFVSSTGYTPV*GKEQFCNILCF
Trigger: AAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAGGAGTATAGCCGGTTGAAGATACAAAATCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
3UTR-3UTR CAA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGGAACTTAAACACTCCTaGTGTCTTTCTGAGGCTTAC +
Preference number: 3 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKELKHS*CLSEAY
Trigger: GTAAGCCTCAGAAAGACACAAGGAGTGTTTAAGTTC...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp CAGGAAGAACTGGGCATGGTGACACACACCATCAGTCCTAATGCTTGGGAGGCATGTGGGGCTCAGGCATaGTGGCATCAGCCCAGGGGT +
Preference number: 4 (lower is better)
Translates to: QEELGMVTHTISPNAWEACGAQA*WHQPRG
Trigger: ACCCCTGGGCTGATGCCACCATGCCTGAGCCCCACA...TGCCTCCCAAGCATTAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp ATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGTAGGCCTGCTGCAGGCTGGTaGCCCCACGTGCCACAGGAG +
Preference number: 4 (lower is better)
Translates to: MSLTSGNWVLETVTDTGRPAAGW*PHVPQE
Trigger: CTCCTGTGGCACGTGGGGCCACCAGCCTGCAGCAGG...CCTACCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp CAGGAAGAACTGGGCATGGTGACACACACCATCAGTCCTAATGCTTGGGAGGCACTCCTGAGCTTCCACTaGCTCCAGGACACCAGGGAG +
Preference number: 4 (lower is better)
Translates to: QEELGMVTHTISPNAWEALLSFH*LQDTRE
Trigger: CTCCCTGGTGTCCTGGAGGCAGTGGAAGCTCAGGAG...TGCCTCCCAAGCATTAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp CAGGAAGAACTGGGCATGGTGACACACACCATCAGTCCTAATGCTTGGGAGGCACTCCAGACTTGCAGCTaGCAGCAGGCCACTTTCTGG +
Preference number: 4 (lower is better)
Translates to: QEELGMVTHTISPNAWEALQTCS*QQATFW
Trigger: CCAGAAAGTGGCCTGCTGTCAGCTGCAAGTCTGGAG...TGCCTCCCAAGCATTAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp CTGGTCTACATAGTTGAGTTCCAGGCCAGCCAAAGTTACATGGTGAGATCCTGTCCATTCCAGAGGGGCTaGGAGCCGAGTCCTGGCCTC +
Preference number: 4 (lower is better)
Translates to: LVYIVEFQASQSYMVRSCPFQRG*EPSPGL
Trigger: GAGGCCAGGACTCGGCTCCCAGCCCCTCTGGAATGG...ACAGGATCTCACCATGTAACTTTGGCTGGCCTGGAACTCAACTATGTAGACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp CTGAATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGCACCACGAGTCTCCCTaGGAGCAGGAGGCCCACAGA +
Preference number: 4 (lower is better)
Translates to: LNVTNFWELGPRNRHRHWHHESP*EQEAHR
Trigger: TCTGTGGGCCTCCTGCTCCCAGGGAGACTCGTGGTG...CCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACATTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp ATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGTAGGGGAAGTACTGCCCAGTaGCCCAGCTGTAGGGTCAGC +
Preference number: 4 (lower is better)
Translates to: MSLTSGNWVLETVTDTGRGSTAQ*PSCRVS
Trigger: GCTGACCCTACAGCTGGGCCACTGGGCAGTACTTCC...CCTACCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp ATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGTAGGATCTGCCCTGTGGTGTaGGGCTCAGGCATGGTGGCA +
Preference number: 4 (lower is better)
Translates to: MSLTSGNWVLETVTDTGRICPVV*GSGMVA
Trigger: TGCCACCATGCCTGAGCCCCACACCACAGGGCAGAT...CCTACCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp ATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGTAGGCACCAGGGAGGTCGGTaGCCAAAGCATAGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: MSLTSGNWVLETVTDTGRHQGGR*PKHSRL
Trigger: CAGCCTGCTATGCTTTGGCCACCGACCTCCCTGGTG...CCTACCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp CTGGTCTACATAGTTGAGTTCCAGGCCAGCCAAAGTTACATGGTGAGATCCTGTCTGCTCACCATCCTCTaGGTTGCTGTCCACCCCCAG +
Preference number: 4 (lower is better)
Translates to: LVYIVEFQASQSYMVRSCLLTIL*VAVHPQ
Trigger: CTGGGGGTGGACAGCAACCCAGAGGATGGTGAGCAG...ACAGGATCTCACCATGTAACTTTGGCTGGCCTGGAACTCAACTATGTAGACCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp CAGGAAGAACTGGGCATGGTGACACACACCATCAGTCCTAATGCTTGGGAGGCATGCTTTGCTGGTCTGTaGGCAATGACTGCTCACCAT +
Preference number: 4 (lower is better)
Translates to: QEELGMVTHTISPNAWEACFAGL*AMTAHH
Trigger: ATGGTGAGCAGTCATTGCTCACAGACCAGCAAAGCA...TGCCTCCCAAGCATTAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTTCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp CAGGAAGAACTGGGCATGGTGACACACACCATCAGTCCTAATGCTTGGGAGGCACTAGTTGTCGAAAGATaGAACTCGCCAGGGGCTCAT +
Preference number: 4 (lower is better)
Translates to: QEELGMVTHTISPNAWEALVVER*NSPGAH
Trigger: ATGAGCCCCTGGCGAGTTTCATCTTTCGACAACTAG...TGCCTCCCAAGCATTAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp CTGGTCTACATAGTTGAGTTCCAGGCCAGCCAAAGTTACATGGTGAGATCCTGTTCACCCAGGGGTCCCTaGTCAGCTTCTCCAAAGTGG +
Preference number: 4 (lower is better)
Translates to: LVYIVEFQASQSYMVRSCSPRGP*SASPKW
Trigger: CCACTTTGGAGAAGCTGATCAGGGACCCCTGGGTGA...ACAGGATCTCACCATGTAACTTTGGCTGGCCTGGAACTCAACTATGTAGACCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp CAGGAAGAACTGGGCATGGTGACACACACCATCAGTCCTAATGCTTGGGAGGCATCTGTGAGCAATGACTaGTCACCATCCTCTGGGTTG +
Preference number: 4 (lower is better)
Translates to: QEELGMVTHTISPNAWEASVSND*SPSSGL
Trigger: CAACCCAGAGGATGGTGAGCAGTCATTGCTCACAGA...TGCCTCCCAAGCATTAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTTCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp TCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATACAACTGCCCAAACCAAAGAGTCTTGGATCTCCTGCTaGAGGCTGGTGGCCCCACGT +
Preference number: 4 (lower is better)
Translates to: SFLQVESPEIHTTAQTKESWISC*RLVAPR
Trigger: ACGTGGGGCCACCAGCCTGCAGCAGGAGATCCAAGA...CTCTTTGGTTTGGGCAGTTGTATGGATTTCAGGGCTTTCTACCTGGAGAAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp CTGAATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGTGCTCAGGGCAAGGCTaGAGCAGTCCAGACAGAAGA +
Preference number: 4 (lower is better)
Translates to: LNVTNFWELGPRNRHRHWCSGQG*SSPDRR
Trigger: TCTTCTGTCTGGACTGCTGCAGCCTTGCCCTGAGCA...CCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACATTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp CTGAATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGAGGTGGTGCCGTCTCTaGCTCTCCCAACAGACCTTT +
Preference number: 4 (lower is better)
Translates to: LNVTNFWELGPRNRHRHWRWCRL*LSQQTF
Trigger: AAAGGTCTGTTGGGAGAGCCAGAGACGGCACCACCT...CCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACATTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp TCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATACAACTGCCCAAACCAAAGAGGGAGTGGAAGTGATCTaGGCACTCGGCCTGGGCTTC +
Preference number: 4 (lower is better)
Translates to: SFLQVESPEIHTTAQTKEGVEVI*ALGLGF
Trigger: GAAGCCCAGGCCGAGTGCCCAGATCACTTCCACTCC...CTCTTTGGTTTGGGCAGTTGTATGGATTTCAGGGCTTTCTACCTGGAGAAAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp ATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGTAGGAGATGCAAGCAGTGCTaGTCACCACGAGTCTCCCTG +
Preference number: 4 (lower is better)
Translates to: MSLTSGNWVLETVTDTGRRCKQC*SPRVSL
Trigger: CAGGGAGACTCGTGGTGACCAGCACTGCTTGCATCT...CCTACCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp CAGGAAGAACTGGGCATGGTGACACACACCATCAGTCCTAATGCTTGGGAGGCAAGTGCAGTTTGCTTGTaGAGATGTTTTGGGCAGCCA +
Preference number: 4 (lower is better)
Translates to: QEELGMVTHTISPNAWEASAVCL*RCFGQP
Trigger: TGGCTGCCCAAAACATCTGCACAAGCAAACTGCACT...TGCCTCCCAAGCATTAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp CTGAATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGATTTCAGCTTCAAACTaGGAGGGAAGGTGGTGCCGT +
Preference number: 4 (lower is better)
Translates to: LNVTNFWELGPRNRHRHWISASN*EGRWCR
Trigger: ACGGCACCACCTTCCCTCTCAGTTTGAAGCTGAAAT...CCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACATTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp ATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGTAGGCAATGTCGAGGCAATTaGCCAGATCTGGCAGCTGTA +
Preference number: 4 (lower is better)
Translates to: MSLTSGNWVLETVTDTGRQCRGN*PDLAAV
Trigger: TACAGCTGCCAGATCTGGTCAATTGCCTCGACATTG...CCTACCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp TCATCCCAATCCTTCACAACTTCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATACCAAGGCTTGGCTCTaGGCACCTCTCCAAAGCTGG +
Preference number: 4 (lower is better)
Translates to: SSQSFTTSFLQVESPEIHTKAWL*APLQSW
Trigger: CCAGCTTTGGAGAGGTGCTCAGAGCCAAGCCTTGGT...ATGGATTTCAGGGCTTTCTACCTGGAGAAAGGAAGTTGTGAAGGATTGGGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp CTGGTCTACATAGTTGAGTTCCAGGCCAGCCAAAGTTACATGGTGAGATCCTGTGAGGGGTCCTTAAGATaGAAGCAGTGCTGGTCACCA +
Preference number: 4 (lower is better)
Translates to: LVYIVEFQASQSYMVRSCEGSLR*KQCWSP
Trigger: TGGTGACCAGCACTGCTTGCATCTTAAGGACCCCTC...ACAGGATCTCACCATGTAACTTTGGCTGGCCTGGAACTCAACTATGTAGACCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp CTGAATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGCTACAGCCCTTCCACTaGGCTTGGATTTCAGCTTCA +
Preference number: 4 (lower is better)
Translates to: LNVTNFWELGPRNRHRHWLQPFH*AWISAS
Trigger: TGAAGCTGAAATCCAAGCCCAGTGGAAGGGCTGTAG...CCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACATTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp CAGGAAGAACTGGGCATGGTGACACACACCATCAGTCCTAATGCTTGGGAGGCATGGCAGGTTTCTCTTTaGAATGCTTTGCTGGTCTGT +
Preference number: 4 (lower is better)
Translates to: QEELGMVTHTISPNAWEAWQVSL*NALLVC
Trigger: ACAGACCAGCAAAGCATTCCAAAGAGAAACCTGCCA...TGCCTCCCAAGCATTAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp ATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGTAGGCTGACCACCATGGGCTaGCAGGTTTCTCTTTGGAAT +
Preference number: 4 (lower is better)
Translates to: MSLTSGNWVLETVTDTGRLTTMG*QVSLWN
Trigger: ATTCCAAAGAGAAACCTGCCAGCCCATGGTGGTCAG...CCTACCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp CTGAATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGGCAGGCTTCCTTTTGTaGGGTTTTGTTGCACCTTGG +
Preference number: 4 (lower is better)
Translates to: LNVTNFWELGPRNRHRHWAGFLL*GFVAPW
Trigger: CCAAGGTGCAACAAAACCCCACAAAAGGAAGCCTGC...CCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACATTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp CTGAATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGATGGTTCATCCAGAGTaGGTGTCCCAAGCAAGACAC +
Preference number: 4 (lower is better)
Translates to: LNVTNFWELGPRNRHRHWMVHPE*VSQARH
Trigger: GTGTCTTGCTTGGGACACCCACTCTGGATGAACCAT...CCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACATTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp TCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATACAACTGCCCAAACCAAAGAGAGCTCAGGCATGGAGTaGGTAGAGCTAGGCAGACTG +
Preference number: 4 (lower is better)
Translates to: SFLQVESPEIHTTAQTKESSGME*VELGRL
Trigger: CAGTCTGCCTAGCTCTACCCACTCCATGCCTGAGCT...CTCTTTGGTTTGGGCAGTTGTATGGATTTCAGGGCTTTCTACCTGGAGAAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp TCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATACAACTGCCCAAACCAAAGAGTGGCCAATCAGGTCATaGCTGCTATACCCTAGGAGG +
Preference number: 4 (lower is better)
Translates to: SFLQVESPEIHTTAQTKEWPIRS*LLYPRR
Trigger: CCTCCTAGGGTATAGCAGTCATGACCTGATTGGCCA...CTCTTTGGTTTGGGCAGTTGTATGGATTTCAGGGCTTTCTACCTGGAGAAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp TCATCCCAATCCTTCACAACTTCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATCTGGTCTGTGAGCAATaGCTGCTCACCATCCTCTGG +
Preference number: 4 (lower is better)
Translates to: SSQSFTTSFLQVESPEIHLVCEQ*LLTILW
Trigger: CCAGAGGATGGTGAGCAGTCATTGCTCACAGACCAG...ATGGATTTCAGGGCTTTCTACCTGGAGAAAGGAAGTTGTGAAGGATTGGGATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp ATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGTAGGTCCAAGCAGGGATGGTaGTCAATGAAAGCAAAGAGG +
Preference number: 4 (lower is better)
Translates to: MSLTSGNWVLETVTDTGRSKQGW*SMKAKR
Trigger: CCTCTTTGCTTTCATTGACCACCATCCCTGCTTGGA...CCTACCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp ATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGTAGGCTATGGATGATGCCTTaGGAGTGCAGGTATCCTACA +
Preference number: 4 (lower is better)
Translates to: MSLTSGNWVLETVTDTGRLWMMP*ECRYPT
Trigger: TGTAGGATACCTGCACTCCCAAGGCATCATCCATAG...CCTACCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp TCATCCCAATCCTTCACAACTTCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATCCACATCTCCAGCTCTaGCCCTCTGTAGGGATTTCC +
Preference number: 4 (lower is better)
Translates to: SSQSFTTSFLQVESPEIHPHLQL*PSVGIS
Trigger: GGAAATCCCTACAGAGGGCCAGAGCTGGAGATGTGG...ATGGATTTCAGGGCTTTCTACCTGGAGAAAGGAAGTTGTGAAGGATTGGGATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp ATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGTAGGTTGGGAAACCAGGAATaGGGGATGAATAACTGCCTC +
Preference number: 4 (lower is better)
Translates to: MSLTSGNWVLETVTDTGRLGNQE*GMNNCL
Trigger: GAGGCAGTTATTCATCCCCCATTCCTGGTTTCCCAA...CCTACCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp CAGGAAGAACTGGGCATGGTGACACACACCATCAGTCCTAATGCTTGGGAGGCACAGACCTTTGAATCTTaGGACTCTTTGGGATATGTT +
Preference number: 4 (lower is better)
Translates to: QEELGMVTHTISPNAWEAQTFES*DSLGYV
Trigger: AACATATCCCAAAGAGTCTCAAGATTCAAAGGTCTG...TGCCTCCCAAGCATTAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTTCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp AAACACTCCTTGTGTCTTTCTGAGGCTTACAACTTAAAGCCCTTTAATAGTACACTGGCCTCGCTGCTGTaGGGCCCACTCGCTTCTGTA +
Preference number: 4 (lower is better)
Translates to: KHSLCLSEAYNLKPFNSTLASLL*GPLASV
Trigger: TACAGAAGCGAGTGGGCCTCACAGCAGCGAGGCCAG...TGTACTATTAAAGGGCTTTAAGTTGTAAGCCTCAGAAAGACACAAGGAGTGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp CTGGTCTACATAGTTGAGTTCCAGGCCAGCCAAAGTTACATGGTGAGATCCTGTGGAGCTCCACACGCTTaGCTTCAAACTGTATACTCA +
Preference number: 4 (lower is better)
Translates to: LVYIVEFQASQSYMVRSCGAPHA*LQTVYS
Trigger: TGAGTATACAGTTTGAAGTCAAGCGTGTGGAGCTCC...ACAGGATCTCACCATGTAACTTTGGCTGGCCTGGAACTCAACTATGTAGACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp CTGGTCTACATAGTTGAGTTCCAGGCCAGCCAAAGTTACATGGTGAGATCCTGTAGTTCCCAGTTGTGTTaGGCATCAGAGTTCATCTCC +
Preference number: 4 (lower is better)
Translates to: LVYIVEFQASQSYMVRSCSSQLC*ASEFIS
Trigger: GGAGATGAACTCTGATGCCCAACACAACTGGGAACT...ACAGGATCTCACCATGTAACTTTGGCTGGCCTGGAACTCAACTATGTAGACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp TCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATACAACTGCCCAAACCAAAGAGGGAGTTCTGTCTGTCTaGTCCTTGAGAAAGAGCTCC +
Preference number: 4 (lower is better)
Translates to: SFLQVESPEIHTTAQTKEGVLSV*SLRKSS
Trigger: GGAGCTCTTTCTCAAGGACCAGACAGACAGAACTCC...CTCTTTGGTTTGGGCAGTTGTATGGATTTCAGGGCTTTCTACCTGGAGAAAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp CTGGTCTACATAGTTGAGTTCCAGGCCAGCCAAAGTTACATGGTGAGATCCTGTCTGAGCCATTTCACTTaGACTCCTACTCCCAATCTC +
Preference number: 4 (lower is better)
Translates to: LVYIVEFQASQSYMVRSCLSHFT*TPTPNL
Trigger: GAGATTGGGAGTAGGAGTCCAAGTGAAATGGCTCAG...ACAGGATCTCACCATGTAACTTTGGCTGGCCTGGAACTCAACTATGTAGACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACGGACCCAGAGCATCCTaGAGCCAGGCCACGCAGCAA +
Preference number: 4 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDGPRAS*SQATQQ
Trigger: TTGCTGCGTGGCCTGGCTTCAGGATGCTCTGGGTCC...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGGAAGGCGACCCAGGCTaGCACTCTCTCCACAGGCTC +
Preference number: 4 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKEGDPG*HSLHRL
Trigger: GAGCCTGTGGAGAGAGTGTCAGCCTGGGTCGCCTTC...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp CTGAATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGAATGAGAACCTCAGGTaGACAGTATTCGATTGTTCC +
Preference number: 4 (lower is better)
Translates to: LNVTNFWELGPRNRHRHWNENLR*TVFDCS
Trigger: GGAACAATCGAATACTGTGCACCTGAGGTTCTCATT...CCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACATTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp CTGGTCTACATAGTTGAGTTCCAGGCCAGCCAAAGTTACATGGTGAGATCCTGTGGTTTTGTTGCACCTTaGATAACCATTTCCTGTGGG +
Preference number: 4 (lower is better)
Translates to: LVYIVEFQASQSYMVRSCGFVAP*ITISCG
Trigger: CCCACAGGAAATGGTTATCCAAGGTGCAACAAAACC...ACAGGATCTCACCATGTAACTTTGGCTGGCCTGGAACTCAACTATGTAGACCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp TCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATACAACTGCCCAAACCAAAGAGATAGGCACATATCGTTaGGACCAGGATCTGGTAAGG +
Preference number: 4 (lower is better)
Translates to: SFLQVESPEIHTTAQTKEIGTYR*DQDLVR
Trigger: CCTTACCAGATCCTGGTCCCAACGATATGTGCCTAT...CTCTTTGGTTTGGGCAGTTGTATGGATTTCAGGGCTTTCTACCTGGAGAAAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp TCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATACAACTGCCCAAACCAAAGAGTCCTTGATGTCTCTATaGATGATGCCTTGGGAGTGC +
Preference number: 4 (lower is better)
Translates to: SFLQVESPEIHTTAQTKESLMSL*MMPWEC
Trigger: GCACTCCCAAGGCATCATCCATAGAGACATCAAGGA...CTCTTTGGTTTGGGCAGTTGTATGGATTTCAGGGCTTTCTACCTGGAGAAAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp CTGGTCTACATAGTTGAGTTCCAGGCCAGCCAAAGTTACATGGTGAGATCCTGTAGACTCATAAGTTCTTaGGAAACCAGGAATGGGGGA +
Preference number: 4 (lower is better)
Translates to: LVYIVEFQASQSYMVRSCRLISS*ETRNGG
Trigger: TCCCCCATTCCTGGTTTCCCAAGAACTTATGAGTCT...ACAGGATCTCACCATGTAACTTTGGCTGGCCTGGAACTCAACTATGTAGACCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGGCTGTCCACCCCCAGTaGGGGCTGACATGCAGAAGA +
Preference number: 4 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKAVHPQ*GLTCRR
Trigger: TCTTCTGCATGTCAGCCCTCACTGGGGGTGGACAGC...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACCACCATCCTCTGGGTTaGTGTCCACCCCCAGTGAGG +
Preference number: 4 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDHHPLG*CPPPVR
Trigger: CCTCACTGGGGGTGGACAGCAACCCAGAGGATGGTG...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp TCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATACAACTGCCCAAACCAAAGAGAGGGAGCTGCATGGATaGAATCAAGTCTATGACACA +
Preference number: 4 (lower is better)
Translates to: SFLQVESPEIHTTAQTKERELHG*NQVYDT
Trigger: TGTGTCATAGACTTGATTCCATCCATGCAGCTCCCT...CTCTTTGGTTTGGGCAGTTGTATGGATTTCAGGGCTTTCTACCTGGAGAAAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACGACCCTGGGCCCCACTaGCCAGTTCCCAGTTGTGTT +
Preference number: 4 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDDPGPH*PVPSCV
Trigger: AACACAACTGGGAACTGGCCAGTGGGGCCCAGGGTC...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp AAACACTCCTTGTGTCTTTCTGAGGCTTACAACTTAAAGCCCTTTAATAGTACAGCTGCTCCTCGTGGATaGGCAGGCTTCCTTTTGTGG +
Preference number: 4 (lower is better)
Translates to: KHSLCLSEAYNLKPFNSTAAPRG*AGFLLW
Trigger: CCACAAAAGGAAGCCTGCCCATCCACGAGGAGCAGC...TGTACTATTAAAGGGCTTTAAGTTGTAAGCCTCAGAAAGACACAAGGAGTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACCTGCTATCTGCCCTGTaGTGTGGGGCTCAGGCATGG +
Preference number: 4 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDLLSAL*CGAQAW
Trigger: CCATGCCTGAGCCCCACACCACAGGGCAGATAGCAG...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp AAACACTCCTTGTGTCTTTCTGAGGCTTACAACTTAAAGCCCTTTAATAGTACAGGTGCAGCAGCGCAGTaGAGTTTGCTTGTGCAGATG +
Preference number: 4 (lower is better)
Translates to: KHSLCLSEAYNLKPFNSTGAAAQ*SLLVQM
Trigger: CATCTGCACAAGCAAACTGCACTGCGCTGCTGCACC...TGTACTATTAAAGGGCTTTAAGTTGTAAGCCTCAGAAAGACACAAGGAGTGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp CTGGTCTACATAGTTGAGTTCCAGGCCAGCCAAAGTTACATGGTGAGATCCTGTAGGTATAAAATAGTTTaGCCCTCTCTAAGTAGGCAG +
Preference number: 4 (lower is better)
Translates to: LVYIVEFQASQSYMVRSCRYKIV*PSLSRQ
Trigger: CTGCCTACTTAGAGAGGGGCAAACTATTTTATACCT...ACAGGATCTCACCATGTAACTTTGGCTGGCCTGGAACTCAACTATGTAGACCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp TCATCCCAATCCTTCACAACTTCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATTATCCACACAGAGACTaGAATCTTCTCCCCAATTCG +
Preference number: 4 (lower is better)
Translates to: SSQSFTTSFLQVESPEIHYPHRD*NLLPNS
Trigger: CGAATTGGGGAGAAGATTCCAGTCTCTGTGTGGATA...ATGGATTTCAGGGCTTTCTACCTGGAGAAAGGAAGTTGTGAAGGATTGGGATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp TCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATACAACTGCCCAAACCAAAGAGCAGTTTTGCATCCACTaGTTTGGACTTGCTTTCTTC +
Preference number: 4 (lower is better)
Translates to: SFLQVESPEIHTTAQTKEQFCIH*FGLAFF
Trigger: GAAGAAAGCAAGTCCAAACCAGTGGATGCAAAACTG...CTCTTTGGTTTGGGCAGTTGTATGGATTTCAGGGCTTTCTACCTGGAGAAAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp AAACACTCCTTGTGTCTTTCTGAGGCTTACAACTTAAAGCCCTTTAATAGTACAGCACCTCTCCAAAGCTaGATCCAGACAGCTCAGGCA +
Preference number: 4 (lower is better)
Translates to: KHSLCLSEAYNLKPFNSTAPLQS*IQTAQA
Trigger: TGCCTGAGCTGTCTGGATCCAGCTTTGGAGAGGTGC...TGTACTATTAAAGGGCTTTAAGTTGTAAGCCTCAGAAAGACACAAGGAGTGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp CTGAATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGAGCTGGAAGAACTCTTaGTTTTCGAATATATCCAGA +
Preference number: 4 (lower is better)
Translates to: LNVTNFWELGPRNRHRHWSWKNS*FSNISR
Trigger: TCTGGATATATTCGAAAACCAAGAGTTCTTCCAGCT...CCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACATTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACCCCCAGTGAGGGCTaGCATGCAGAAGAAGGAAGT +
Preference number: 4 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKTPSEG*HAEEGS
Trigger: ACTTCCTTCTTCTGCATGTCAGCCCTCACTGGGGGT...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp TCATCCCAATCCTTCACAACTTCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATAAGCCACGATCTTGCTaGAATCTCTTTATCCACACA +
Preference number: 4 (lower is better)
Translates to: SSQSFTTSFLQVESPEIHKPRSC*NLFIHT
Trigger: TGTGTGGATAAAGAGATTGCAGCAAGATCGTGGCTT...ATGGATTTCAGGGCTTTCTACCTGGAGAAAGGAAGTTGTGAAGGATTGGGATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGTGCTCGATCATGTCCTaGTCCCATCTCCTGGAACCG +
Preference number: 4 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKCSIMS*SHLLEP
Trigger: CGGTTCCAGGAGATGGGAGCAGGACATGATCGAGCA...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACAACACCACTGCAGCGTaGCCATCAGCCTCCACATGT +
Preference number: 4 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDNTTAA*PSASTC
Trigger: ACATGTGGAGGCTGATGGCCACGCTGCAGTGGTGTT...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp AAACACTCCTTGTGTCTTTCTGAGGCTTACAACTTAAAGCCCTTTAATAGTACAGGCCCCACTGCCAAGTaGGCTGATGGTGTTATACTT +
Preference number: 4 (lower is better)
Translates to: KHSLCLSEAYNLKPFNSTGPTAK*ADGVIL
Trigger: AAGTATAACACCATCAGCCCACTTGGCAGTGGGGCC...TGTACTATTAAAGGGCTTTAAGTTGTAAGCCTCAGAAAGACACAAGGAGTGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp AAACACTCCTTGTGTCTTTCTGAGGCTTACAACTTAAAGCCCTTTAATAGTACACAGCGCAGTGCAGTTTaGTTGTGCAGATGTTTTGGG +
Preference number: 4 (lower is better)
Translates to: KHSLCLSEAYNLKPFNSTQRSAV*LCRCFG
Trigger: CCCAAAACATCTGCACAAGCAAACTGCACTGCGCTG...TGTACTATTAAAGGGCTTTAAGTTGTAAGCCTCAGAAAGACACAAGGAGTGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACGTCAGCATACTCAGGTaGAGCAGCGCAGTGCAGTTT +
Preference number: 4 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDVSILR*SSAVQF
Trigger: AAACTGCACTGCGCTGCTGCACCTGAGTATGCTGAC...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACCCAGGAGGAGGGAGCTaGATGGATGGAATCAAGTCT +
Preference number: 4 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDPGGGS*MDGIKS
Trigger: AGACTTGATTCCATCCATGCAGCTCCCTCCTCCTGG...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp AAACACTCCTTGTGTCTTTCTGAGGCTTACAACTTAAAGCCCTTTAATAGTACAAATAGCTGCTCCTCGTaGATGGGCAGGCTTCCTTTT +
Preference number: 4 (lower is better)
Translates to: KHSLCLSEAYNLKPFNSTNSCSS*MGRLPF
Trigger: AAAAGGAAGCCTGCCCATCCACGAGGAGCAGCTATT...TGTACTATTAAAGGGCTTTAAGTTGTAAGCCTCAGAAAGACACAAGGAGTGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp TCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATACAACTGCCCAAACCAAAGAGTTGCATCCACTGGTTTaGACTTGCTTTCTTCTAAAA +
Preference number: 4 (lower is better)
Translates to: SFLQVESPEIHTTAQTKELHPLV*TCFLLK
Trigger: TTTTAGAAGAAAGCAAGTCCAAACCAGTGGATGCAA...CTCTTTGGTTTGGGCAGTTGTATGGATTTCAGGGCTTTCTACCTGGAGAAAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACGTGAACCCATGGAGATaGGCAAAGAGACTGTCGCAT +
Preference number: 4 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDVNPWR*AKRLSH
Trigger: ATGCGACAGTCTCTTTGCTCATCTCCATGGGTTCAC...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGAGGGATGGTGGTCAATaGAAGCAAAGAGGTCCATGC +
Preference number: 4 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKRDGGQ*KQRGPC
Trigger: GCATGGACCTCTTTGCTTTCATTGACCACCATCCCT...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGTATACCCTAGGAGGCTaGAGGCTTTGTCGTTGGCAA +
Preference number: 4 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKYTLGG*RLCRWQ
Trigger: TTGCCAACGACAAAGCCTGCAGCCTCCTAGGGTATA...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGCCACCACCTCTTTGTTaGATTCCTTCTCCACTGCAG +
Preference number: 4 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKPPPLC*IPSPLQ
Trigger: CTGCAGTGGAGAAGGAATGCAACAAAGAGGTGGTGG...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACTTAAGATGCAAGCAGTaGTGGTCACCACGAGTCTCC +
Preference number: 4 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDLRCKQ*WSPRVS
Trigger: GGAGACTCGTGGTGACCAGCACTGCTTGCATCTTAA...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp AAACACTCCTTGTGTCTTTCTGAGGCTTACAACTTAAAGCCCTTTAATAGTACAATAAATTGTGCCATCTaGCAGCAGAGTGATGAGGCC +
Preference number: 4 (lower is better)
Translates to: KHSLCLSEAYNLKPFNSTINCAI*QQSDEA
Trigger: GGCCTCATCACTCTGCTGCCAGATGGCACAATTTAT...TGTACTATTAAAGGGCTTTAAGTTGTAAGCCTCAGAAAGACACAAGGAGTGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR TCA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACCAGGAATCAGGAAAGTaGTATTCTTGCCCAGGAGCT +
Preference number: 4 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDQESGK*YSCPGA
Trigger: AGCTCCTGGGCAAGAATATCACTTTCCTGATTCCTG...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACAAAGCCCATTCTTCCTaGTCAGGTGTTTGTGGGCTA +
Preference number: 4 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDKAHSS*SGVCGL
Trigger: TAGCCCACAAACACCTGAGCAGGAAGAATGGGCTTT...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGTCCTTTCCCAAGACATaGATATGCTGGCCTGCAAAC +
Preference number: 4 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKSFPKT*ICWPAN
Trigger: GTTTGCAGGCCAGCATATCCATGTCTTGGGAAAGGA...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp AAACACTCCTTGTGTCTTTCTGAGGCTTACAACTTAAAGCCCTTTAATAGTACATCATCCAAGCAGGGATaGTGGTCAATGAAAGCAAAG +
Preference number: 4 (lower is better)
Translates to: KHSLCLSEAYNLKPFNSTSSKQG*WSMKAK
Trigger: CTTTGCTTTCATTGACCACCATCCCTGCTTGGATGA...TGTACTATTAAAGGGCTTTAAGTTGTAAGCCTCAGAAAGACACAAGGAGTGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp AAACACTCCTTGTGTCTTTCTGAGGCTTACAACTTAAAGCCCTTTAATAGTACAGATAACCATTTCCTGTaGGTTAGTGGGCTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: KHSLCLSEAYNLKPFNSTDNHFL*VSGLSS
Trigger: AGAAGAAAGCCCACTAACCCACAGGAAATGGTTATC...TGTACTATTAAAGGGCTTTAAGTTGTAAGCCTCAGAAAGACACAAGGAGTGTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CCA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACTTTTCCATCACCAGCTaGAAGAACTCTTGGTTTTCG +
Preference number: 4 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDFSITS*KNSWFS
Trigger: CGAAAACCAAGAGTTCTTCCAGCTGGTGATGGAAAA...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGCCACTGGTTTGGACTTaGTTTCTTCTAAAAGACTCT +
Preference number: 4 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKPLVWT*FLLKDS
Trigger: AGAGTCTTTTAGAAGAAAGCAAGTCCAAACCAGTGG...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR GCA 90 bp AAACACTCCTTGTGTCTTTCTGAGGCTTACAACTTAAAGCCCTTTAATAGTACATTAATCAAGCAAGTCTaGAGCTCTTCTCTGTCATTT +
Preference number: 4 (lower is better)
Translates to: KHSLCLSEAYNLKPFNSTLIKQV*SSSLSF
Trigger: AAATGACAGAGAAGAGCTGCAGACTTGCTTGATTAA...TGTACTATTAAAGGGCTTTAAGTTGTAAGCCTCAGAAAGACACAAGGAGTGTTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp CCAGAGTGGGTGTCCCAAGCAAGACACACGCCATTCCAGAGGGGCTaGGAGCCGAGTCCTGGCCTCGCTGCTGTGAGGCCCACTCGCTTC +
Preference number: 5 (lower is better)
Translates to: PEWVSQARHTPFQRG*EPSPGLAAVRPTRF
Trigger: GAAGCGAGTGGGCCTCACAGCAGCGAGGCCAGGACTCGGCTCCCAGCCCCTCTGGAATGGCGTGTGTCTTGCTTGGGACACCCACTCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp GTAGATGCCCTCTTGGATCTCCTGCTGCAGGCTGGTGGCCCCACGTaGCACAGGAGTGGAAGTGATCTGGGCACTCGGCCTGGGCTTCTC +
Preference number: 5 (lower is better)
Translates to: VDALLDLLLQAGGPT*HRSGSDLGTRPGLL
Trigger: GAGAAGCCCAGGCCGAGTGCCCAGATCACTTCCACTCCTGTGGCACGTGGGGCCACCAGCCTGCAGCAGGAGATCCAAGAGGGCATCTAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp CCAAGCAAGACACACGCCATTCCAGAGGGGCTGGGAGCCGAGTCCTaGCCTCGCTGCTGTGAGGCCCACTCGCTTCTGTACTGTGGGCAA +
Preference number: 5 (lower is better)
Translates to: PSKTHAIPEGLGAES*PRCCEAHSLLYCGQ
Trigger: TTGCCCACAGTACAGAAGCGAGTGGGCCTCACAGCAGCGAGGCCAGGACTCGGCTCCCAGCCCCTCTGGAATGGCGTGTGTCTTGCTTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 90 bp GTTGGGGTTGCACACAGGGGTCGAAAGCAGGGACCCAGAGCATCCTaGAGCCAGGCCACGCAGCAAGGAGCAGCAGGAAGTACTGCCCAG +
Preference number: 5 (lower is better)
Translates to: VGVAHRGRKQGPRAS*SQATQQGAAGSTAQ
Trigger: CTGGGCAGTACTTCCTGCTGCTCCTTGCTGCGTGGCCTGGCTTCAGGATGCTCTGGGTCCCTGCTTTCGACCCCTGTGTGCAACCCCAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp CTGGCAAGGAACAGGCGGGTTCGTGTGGCTGAGTCCCGGTGGCTATaGAAGAGGTCCTTCACCAGCCAGCAGCAGAACAGGGTCGCAGAG +
Preference number: 5 (lower is better)
Translates to: LARNRRVRVAESRWL*KRSFTSQQQNRVAE
Trigger: CTCTGCGACCCTGTTCTGCTGCTGGCTGGTGAAGGACCTCTTCCATAGCCACCGGGACTCAGCCACACGAACCCGCCTGTTCCTTGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp GGCAGACTGGCAAGGAACAGGCGGGTTCGTGTGGCTGAGTCCCGGTaGCTATGGAAGAGGTCCTTCACCAGCCAGCAGCAGAACAGGGTC +
Preference number: 5 (lower is better)
Translates to: GRLARNRRVRVAESR*LWKRSFTSQQQNRV
Trigger: GACCCTGTTCTGCTGCTGGCTGGTGAAGGACCTCTTCCATAGCCACCGGGACTCAGCCACACGAACCCGCCTGTTCCTTGCCAGTCTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 90 bp GGTAGAGCTAGGCAGACTGGCAAGGAACAGGCGGGTTCGTGTGGCTaGGTCCCGGTGGCTATGGAAGAGGTCCTTCACCAGCCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: GRARQTGKEQAGSCG*VPVAMEEVLHQPAA
Trigger: TGCTGCTGGCTGGTGAAGGACCTCTTCCATAGCCACCGGGACTCAGCCACACGAACCCGCCTGTTCCTTGCCAGTCTGCCTAGCTCTACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp CTCCCCAATTCGGCTGACGATGTCCACCACTGTGCCGAACACCACTaGAGCGTGGCCATCAGCCTCCACATGTTCCTCGCTGAGGGCTTC +
Preference number: 5 (lower is better)
Translates to: LPNSADDVHHCAEHH*SVAISLHMFLAEGF
Trigger: GAAGCCCTCAGCGAGGAACATGTGGAGGCTGATGGCCACGCTGCAGTGGTGTTCGGCACAGTGGTGGACATCGTCAGCCGAATTGGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp ACACACGCCATTCCAGAGGGGCTGGGAGCCGAGTCCTGGCCTCGCTaGTGTGAGGCCCACTCGCTTCTGTACTGTGGGCAATATGTAAGG +
Preference number: 5 (lower is better)
Translates to: THAIPEGLGAESWPR*CEAHSLLYCGQYVR
Trigger: CCTTACATATTGCCCACAGTACAGAAGCGAGTGGGCCTCACAGCAGCGAGGCCAGGACTCGGCTCCCAGCCCCTCTGGAATGGCGTGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp TGTGGGCAATATGTAAGGCTCCCGCCTGCTATCTGCCCTGTGGTGTaGGGCTCAGGCATGGTGGCATCAGCCCAGGGGTTAGGACTGCTG +
Preference number: 5 (lower is better)
Translates to: CGQYVRLPPAICPVV*GSGMVASAQGLGLL
Trigger: CAGCAGTCCTAACCCCTGGGCTGATGCCACCATGCCTGAGCCCCACACCACAGGGCAGATAGCAGGCGGGAGCCTTACATATTGCCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp TGCTGCAGGCTGGTGGCCCCACGTGCCACAGGAGTGGAAGTGATCTaGGCACTCGGCCTGGGCTTCTCTGCTGATAGGCACATATCGTTG +
Preference number: 5 (lower is better)
Translates to: CCRLVAPRATGVEVI*ALGLGFSADRHISL
Trigger: CAACGATATGTGCCTATCAGCAGAGAAGCCCAGGCCGAGTGCCCAGATCACTTCCACTCCTGTGGCACGTGGGGCCACCAGCCTGCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp GAGGCCACTGATGGTGCAGAACACCCACACAGAAGCCTGGTAACCTaGTTCAGAGGCCGCCTCACTGTCAGCTACAGCCCTTCCACTGGG +
Preference number: 5 (lower is better)
Translates to: EATDGAEHPHRSLVT*FRGRLTVSYSPSTG
Trigger: CCCAGTGGAAGGGCTGTAGCTGACAGTGAGGCGGCCTCTGAACCAGGTTACCAGGCTTCTGTGTGGGTGTTCTGCACCATCAGTGGCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp TACTCAGTTGTAAGCCATCCCGGTGGTAGCAGCTTCCAGAGTAGATaGCCTCTTGGATCTCCTGCTGCAGGCTGGTGGCCCCACGTGCCA +
Preference number: 5 (lower is better)
Translates to: YSVVSHPGGSSFQSR*PLGSPAAGWWPHVP
Trigger: TGGCACGTGGGGCCACCAGCCTGCAGCAGGAGATCCAAGAGGGCATCTACTCTGGAAGCTGCTACCACCGGGATGGCTTACAACTGAGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 90 bp CCACGAGTCTCCCTGGGAGCAGGAGGCCCACAGAGACCCTCTCTCTaGGCCATTTCACTTGGACTCCTACTCCCAATCTCCAGACTTGCA +
Preference number: 5 (lower is better)
Translates to: PRVSLGAGGPQRPSL*AISLGLLLPISRLA
Trigger: TGCAAGTCTGGAGATTGGGAGTAGGAGTCCAAGTGAAATGGCTCAGAGAGAGGGTCTCTGTGGGCCTCCTGCTCCCAGGGAGACTCGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp GGAAGTACTGCCCAGTGGCCCAGCTGTAGGGTCAGCATACTCAGGTaGAGCAGCGCAGTGCAGTTTGCTTGTGCAGATGTTTTGGGCAGC +
Preference number: 5 (lower is better)
Translates to: GSTAQWPSCRVSILR*SSAVQFACADVLGS
Trigger: GCTGCCCAAAACATCTGCACAAGCAAACTGCACTGCGCTGCTGCACCTGAGTATGCTGACCCTACAGCTGGGCCACTGGGCAGTACTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp GGCTATGGAGAGTGGCTTGCTGGGCTCAAAGGTAGCCTGGGCCGCTaGGCCTTCTTGGACAGGAGGACTCTCAGACAAACATTTCCAGTC +
Preference number: 5 (lower is better)
Translates to: GYGEWLAGLKGSLGR*AFLDRRTLRQTFPV
Trigger: GACTGGAAATGTTTGTCTGAGAGTCCTCCTGTCCAAGAAGGCCCAGCGGCCCAGGCTACCTTTGAGCCCAGCAAGCCACTCTCCATAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp AGAAAGCCCATTCTTCCTGCTCAGGTGTTTGTGGGCTATGGAGAGTaGCTTGCTGGGCTCAAAGGTAGCCTGGGCCGCTGGGCCTTCTTG +
Preference number: 5 (lower is better)
Translates to: RKPILPAQVFVGYGE*LAGLKGSLGRWAFL
Trigger: CAAGAAGGCCCAGCGGCCCAGGCTACCTTTGAGCCCAGCAAGCCACTCTCCATAGCCCACAAACACCTGAGCAGGAAGAATGGGCTTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 90 bp CGTGTAGATCTCGGCCTCCCAGATCACAGAAAGACACGGGGGCGGTaGAAGGAGGATGTTCTTCAGGAACGAGTTCCACACGGGAGATGC +
Preference number: 5 (lower is better)
Translates to: RVDLGLPDHRKTRGR*KEDVLQERVPHGRC
Trigger: GCATCTCCCGTGTGGAACTCGTTCCTGAAGAACATCCTCCTTTCACCGCCCCCGTGTCTTTCTGTGATCTGGGAGGCCGAGATCTACACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 90 bp GCCAGCAGCAGAACAGGGTCGCAGAGCCCTGGAGCTCCACACGCTTaGCTTCAAACTGTATACTCAGTTGTAAGCCATCCCGGTGGTAGC +
Preference number: 5 (lower is better)
Translates to: ASSRTGSQSPGAPHA*LQTVYSVVSHPGGS
Trigger: GCTACCACCGGGATGGCTTACAACTGAGTATACAGTTTGAAGTCAAGCGTGTGGAGCTCCAGGGCTCTGCGACCCTGTTCTGCTGCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 90 bp CCACTGCAGTCCACACAAAGCCAAAGGCCCCACTGCCAAGTGGGCTaGTGGTGTTATACTTATAGTCGTACTCGCCCTCACAGGCCGCCA +
Preference number: 5 (lower is better)
Translates to: PLQSTQSQRPHCQVG*WCYTYSRTRPHRPP
Trigger: TGGCGGCCTGTGAGGGCGAGTACGACTATAAGTATAACACCATCAGCCCACTTGGCAGTGGGGCCTTTGGCTTTGTGTGGACTGCAGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp GAGGTTCCAGGAATAAGAATTCACATCAGCCTCCTGAGCTTCCACTaGCTCCAGGACACCAGGGAGGTCGGTGGCCAAAGCATAGCAGGC +
Preference number: 5 (lower is better)
Translates to: EVPGIRIHISLLSFH*LQDTREVGGQSIAG
Trigger: GCCTGCTATGCTTTGGCCACCGACCTCCCTGGTGTCCTGGAGGCAGTGGAAGCTCAGGAGGCTGATGTGAATTCTTATTCCTGGAACCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp TGTGTCACCCAGGGGTCCCTGATCAGCTTCTCCAAAGTGGTCCGCTaGTCAGGGCAAGGCTGCAGCAGTCCAGACAGAAGACTCATAAGT +
Preference number: 5 (lower is better)
Translates to: CVTQGSLISFSKVVR*SGQGCSSPDRRLIS
Trigger: ACTTATGAGTCTTCTGTCTGGACTGCTGCAGCCTTGCCCTGAGCAGCGGACCACTTTGGAGAAGCTGATCAGGGACCCCTGGGTGACACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp TGTTTGTGGGCTATGGAGAGTGGCTTGCTGGGCTCAAAGGTAGCCTaGGCCGCTGGGCCTTCTTGGACAGGAGGACTCTCAGACAAACAT +
Preference number: 5 (lower is better)
Translates to: CLWAMESGLLGSKVA*AAGPSWTGGLSDKH
Trigger: ATGTTTGTCTGAGAGTCCTCCTGTCCAAGAAGGCCCAGCGGCCCAGGCTACCTTTGAGCCCAGCAAGCCACTCTCCATAGCCCACAAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp CTCTGGCAGAGTCTAGAAAGCCCATTCTTCCTGCTCAGGTGTTTGTaGGCTATGGAGAGTGGCTTGCTGGGCTCAAAGGTAGCCTGGGCC +
Preference number: 5 (lower is better)
Translates to: LWQSLESPFFLLRCL*AMESGLLGSKVAWA
Trigger: GGCCCAGGCTACCTTTGAGCCCAGCAAGCCACTCTCCATAGCCCACAAACACCTGAGCAGGAAGAATGGGCTTTCTAGACTCTGCCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp GCTCTTCTCTGTCATTTCTCACTCCTGGCCATGGTTCATCCAGAGTaGGTGTCCCAAGCAAGACACACGCCATTCCAGAGGGGCTGGGAG +
Preference number: 5 (lower is better)
Translates to: ALLCHFSLLAMVHPE*VSQARHTPFQRGWE
Trigger: CTCCCAGCCCCTCTGGAATGGCGTGTGTCTTGCTTGGGACACCCACTCTGGATGAACCATGGCCAGGAGTGAGAAATGACAGAGAAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 90 bp CCTAGAGGAGACTTGTCCTCCCACCAGCTTCAGGGTCTCATCTTGTaGTGGCATGTGGTCCCGTGCCAACACCACGTCAATTCTTGGACC +
Preference number: 5 (lower is better)
Translates to: PRGDLSSHQLQGLIL*WHVVPCQHHVNSWT
Trigger: GGTCCAAGAATTGACGTGGTGTTGGCACGGGACCACATGCCATCACAAGATGAGACCCTGAAGCTGGTGGGAGGACAAGTCTCCTCTAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 90 bp CACCATGGGCTGGCAGGTTTCTCTTTGGAATGCTTTGCTGGTCTGTaGGCAATGACTGCTCACCATCCTCTGGGTTGCTGTCCACCCCCA +
Preference number: 5 (lower is better)
Translates to: HHGLAGFSLECFAGL*AMTAHHPLGCCPPP
Trigger: TGGGGGTGGACAGCAACCCAGAGGATGGTGAGCAGTCATTGCTCACAGACCAGCAAAGCATTCCAAAGAGAAACCTGCCAGCCCATGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp AGTGGCTTGCTGGGCTCAAAGGTAGCCTGGGCCGCTGGGCCTTCTTaGACAGGAGGACTCTCAGACAAACATTTCCAGTCCTCAGCAAAA +
Preference number: 5 (lower is better)
Translates to: SGLLGSKVAWAAGPS*TGGLSDKHFQSSAK
Trigger: TTTTGCTGAGGACTGGAAATGTTTGTCTGAGAGTCCTCCTGTCCAAGAAGGCCCAGCGGCCCAGGCTACCTTTGAGCCCAGCAAGCCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp TCCCTGATCAGCTTCTCCAAAGTGGTCCGCTGCTCAGGGCAAGGCTaGAGCAGTCCAGACAGAAGACTCATAAGTTCTTGGGAAACCAGG +
Preference number: 5 (lower is better)
Translates to: SLISFSKVVRCSGQG*SSPDRRLISSWETR
Trigger: CCTGGTTTCCCAAGAACTTATGAGTCTTCTGTCTGGACTGCTGCAGCCTTGCCCTGAGCAGCGGACCACTTTGGAGAAGCTGATCAGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp CTTCTCCACTGCAGTCCACACAAAGCCAAAGGCCCCACTGCCAAGTaGGCTGATGGTGTTATACTTATAGTCGTACTCGCCCTCACAGGC +
Preference number: 5 (lower is better)
Translates to: LLHCSPHKAKGPTAK*ADGVILIVVLALTG
Trigger: GCCTGTGAGGGCGAGTACGACTATAAGTATAACACCATCAGCCCACTTGGCAGTGGGGCCTTTGGCTTTGTGTGGACTGCAGTGGAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CAGGAAGAACTGGGCATGGTGACACACACCATCAGTCCTAATGCTTGGGAGGCAACGGTAAAGACAGCCTaGTTGGGGTTGCACACAGGG +
Preference number: 5 (lower is better)
Translates to: QEELGMVTHTISPNAWEATVKTA*LGLHTG
Trigger: CCCTGTGTGCAACCCCAACAAGGCTGTCTTTACCGT...TGCCTCCCAAGCATTAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp AGTGGCCCAGCTGTAGGGTCAGCATACTCAGGTGCAGCAGCGCAGTaGAGTTTGCTTGTGCAGATGTTTTGGGCAGCCAATGATGAAAGA +
Preference number: 5 (lower is better)
Translates to: SGPAVGSAYSGAAAQ*SLLVQMFWAANDER
Trigger: TCTTTCATCATTGGCTGCCCAAAACATCTGCACAAGCAAACTGCACTGCGCTGCTGCACCTGAGTATGCTGACCCTACAGCTGGGCCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp AAGAGGTCCTTCACCAGCCAGCAGCAGAACAGGGTCGCAGAGCCCTaGAGCTCCACACGCTTGACTTCAAACTGTATACTCAGTTGTAAG +
Preference number: 5 (lower is better)
Translates to: KRSFTSQQQNRVAEP*SSTRLTSNCILSCK
Trigger: CTTACAACTGAGTATACAGTTTGAAGTCAAGCGTGTGGAGCTCCAGGGCTCTGCGACCCTGTTCTGCTGCTGGCTGGTGAAGGACCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp TGTCGAAAGATGAAACTCGCCAGGGGCTCATCCAAGCAGGGATGGTaGTCAATGAAAGCAAAGAGGTCCATGCCAGAGCCGTGCTTTTCC +
Preference number: 5 (lower is better)
Translates to: CRKMKLARGSSKQGW*SMKAKRSMPEPCFS
Trigger: GGAAAAGCACGGCTCTGGCATGGACCTCTTTGCTTTCATTGACCACCATCCCTGCTTGGATGAGCCCCTGGCGAGTTTCATCTTTCGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CTGAATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGACAGCCTTGTTGGGGTaGCACACAGGGGTCGAAAGC +
Preference number: 5 (lower is better)
Translates to: LNVTNFWELGPRNRHRHWTALLG*HTGVES
Trigger: GCTTTCGACCCCTGTGTGCAACCCCAACAAGGCTGT...CCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACATTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 90 bp GACTGCTCACCATCCTCTGGGTTGCTGTCCACCCCCAGTGAGGGCTaGCATGCAGAAGAAGGAAGTATCTTGTATCCAGTTTCCAATCGT +
Preference number: 5 (lower is better)
Translates to: DCSPSSGLLSTPSEG*HAEEGSILYPVSNR
Trigger: ACGATTGGAAACTGGATACAAGATACTTCCTTCTTCTGCATGTCAGCCCTCACTGGGGGTGGACAGCAACCCAGAGGATGGTGAGCAGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp CGAGCTTTTGGCCAATCAGGTCATGACTGCTATACCCTAGGAGGCTaGAGGCTTTGTCGTTGGCAACCAGAATCTCTGTGGTCTTGGCAT +
Preference number: 5 (lower is better)
Translates to: RAFGQSGHDCYTLGG*RLCRWQPESLWSWH
Trigger: ATGCCAAGACCACAGAGATTCTGGTTGCCAACGACAAAGCCTGCAGCCTCCTAGGGTATAGCAGTCATGACCTGATTGGCCAAAAGCTCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp GCACAAGCCACGATCTTGCTGCAATCTCTTTATCCACACAGAGACTaGAATCTTCTCCCCAATTCGGCTGACGATGTCCACCACTGTGCC +
Preference number: 5 (lower is better)
Translates to: AQATILLQSLYPHRD*NLLPNSADDVHHCA
Trigger: GGCACAGTGGTGGACATCGTCAGCCGAATTGGGGAGAAGATTCCAGTCTCTGTGTGGATAAAGAGATTGCAGCAAGATCGTGGCTTGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp AGTTGTCGAAAGATGAAACTCGCCAGGGGCTCATCCAAGCAGGGATaGTGGTCAATGAAAGCAAAGAGGTCCATGCCAGAGCCGTGCTTT +
Preference number: 5 (lower is better)
Translates to: SCRKMKLARGSSKQG*WSMKAKRSMPEPCF
Trigger: AAAGCACGGCTCTGGCATGGACCTCTTTGCTTTCATTGACCACCATCCCTGCTTGGATGAGCCCCTGGCGAGTTTCATCTTTCGACAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 90 bp TCAGATTTGAGGAAGAATTGGGCGAGCTTTTGGCCAATCAGGTCATaGCTGCTATACCCTAGGAGGCTGCAGGCTTTGTCGTTGGCAACC +
Preference number: 5 (lower is better)
Translates to: SDLRKNWASFWPIRS*LLYPRRLQALSLAT
Trigger: GGTTGCCAACGACAAAGCCTGCAGCCTCCTAGGGTATAGCAGTCATGACCTGATTGGCCAAAAGCTCGCCCAATTCTTCCTCAAATCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp CTCTCCACAGGCTCCAGAACCACTACACAGCACAAGCCACGATCTTaGTGCAATCTCTTTATCCACACAGAGACTGGAATCTTCTCCCCA +
Preference number: 5 (lower is better)
Translates to: LSTGSRTTTQHKPRS*CNLFIHTETGIFSP
Trigger: TGGGGAGAAGATTCCAGTCTCTGTGTGGATAAAGAGATTGCAGCAAGATCGTGGCTTGTGCTGTGTAGTGGTTCTGGAGCCTGTGGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp CCCAGGCCCACTCTTTCTGCCAATGTCGAGGCAATTGACCAGATCTaGCAGCTGTACCGAACTATCATATGTGAGGTCCATGTAGTGGTA +
Preference number: 5 (lower is better)
Translates to: PRPTLSANVEAIDQI*QLYRTIICEVHVVV
Trigger: TACCACTACATGGACCTCACATATGATAGTTCGGTACAGCTGCCAGATCTGGTCAATTGCCTCGACATTGGCAGAAAGAGTGGGCCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CAGGAAGAACTGGGCATGGTGACACACACCATCAGTCCTAATGCTTGGGAGGCAGCACAAGCCACGATCTaGCTGCAATCTCTTTATCCA +
Preference number: 5 (lower is better)
Translates to: QEELGMVTHTISPNAWEAAQATI*LQSLYP
Trigger: TGGATAAAGAGATTGCAGCAAGATCGTGGCTTGTGC...TGCCTCCCAAGCATTAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp ATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGTAGGTGGGCAGGCTTCCTTTaGTGGGGTTTTGTTGCACCT +
Preference number: 5 (lower is better)
Translates to: MSLTSGNWVLETVTDTGRWAGFL*WGFVAP
Trigger: AGGTGCAACAAAACCCCACAAAAGGAAGCCTGCCCA...CCTACCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CAGGAAGAACTGGGCATGGTGACACACACCATCAGTCCTAATGCTTGGGAGGCAAGAACCTTGATTATGTaGGCATGGTCCACCTTGGAC +
Preference number: 5 (lower is better)
Translates to: QEELGMVTHTISPNAWEARTLIM*AWSTLD
Trigger: GTCCAAGGTGGACCATGCCAACATAATCAAGGTTCT...TGCCTCCCAAGCATTAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 90 bp AAGAGATGGCGCCTCGCTGAGTTCAGATGTGGTACAGGAACAATGTaGTGGAGTTCTGTCTGTCTGGTCCTTGAGAAAGAGCTCCTTGAG +
Preference number: 5 (lower is better)
Translates to: KRWRLAEFRCGTGTM*WSSVCLVLEKELLE
Trigger: CTCAAGGAGCTCTTTCTCAAGGACCAGACAGACAGAACTCCATCACATTGTTCCTGTACCACATCTGAACTCAGCGAGGCGCCATCTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp GAGACTCTTTGGGATATGTTGGCCAGGAGGAGGGAGCTGCATGGATaGAATCAAGTCTATGACACACTGCCCAACTACATCCTTTGGAGA +
Preference number: 5 (lower is better)
Translates to: ETLWDMLARRRELHG*NQVYDTLPNYILWR
Trigger: TCTCCAAAGGATGTAGTTGGGCAGTGTGTCATAGACTTGATTCCATCCATGCAGCTCCCTCCTCCTGGCCAACATATCCCAAAGAGTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp CTGCAAACAATAGCTGCTCCTCGTGGATGGGCAGGCTTCCTTTTGTaGGGTTTTGTTGCACCTTGGATAACCATTTCCTGTGGGTTAGTG +
Preference number: 5 (lower is better)
Translates to: LQTIAAPRGWAGFLL*GFVAPWITISCGLV
Trigger: CACTAACCCACAGGAAATGGTTATCCAAGGTGCAACAAAACCCCACAAAAGGAAGCCTGCCCATCCACGAGGAGCAGCTATTGTTTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp CAGCAGTCCAGACAGAAGACTCATAAGTTCTTGGGAAACCAGGAATaGGGGATGAATAACTGCCTCCATGGTCTCCTCCACCTCACAGAA +
Preference number: 5 (lower is better)
Translates to: QQSRQKTHKFLGNQE*GMNNCLHGLLHLTE
Trigger: TTCTGTGAGGTGGAGGAGACCATGGAGGCAGTTATTCATCCCCCATTCCTGGTTTCCCAAGAACTTATGAGTCTTCTGTCTGGACTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp TCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATACAACTGCCCAAACCAAAGAGGTAAAGACAGCCTTGTaGGGGTTGCACACAGGGGTC +
Preference number: 5 (lower is better)
Translates to: SFLQVESPEIHTTAQTKEVKTAL*GLHTGV
Trigger: GACCCCTGTGTGCAACCCCAACAAGGCTGTCTTTAC...CTCTTTGGTTTGGGCAGTTGTATGGATTTCAGGGCTTTCTACCTGGAGAAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CTGAATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGCTGGCAGGTTTCTCTTaGGAATGCTTTGCTGGTCTG +
Preference number: 5 (lower is better)
Translates to: LNVTNFWELGPRNRHRHWLAGFS*ECFAGL
Trigger: CAGACCAGCAAAGCATTCCAAAGAGAAACCTGCCAG...CCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACATTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CTGAATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGGATAGGCACATATCGTaGGGACCAGGATCTGGTAAG +
Preference number: 5 (lower is better)
Translates to: LNVTNFWELGPRNRHRHWDRHIS*GPGSGK
Trigger: CTTACCAGATCCTGGTCCCAACGATATGTGCCTATC...CCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACATTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp ATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGTAGGACCACCACCTCTTTGTaGCATTCCTTCTCCACTGCA +
Preference number: 5 (lower is better)
Translates to: MSLTSGNWVLETVTDTGRTTTSL*HSFSTA
Trigger: TGCAGTGGAGAAGGAATGCAACAAAGAGGTGGTGGT...CCTACCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 90 bp CATGCAGAAGAAGGAAGTATCTTGTATCCAGTTTCCAATCGTGTCTaGGTCCTAGAGGAGACTTGTCCTCCCACCAGCTTCAGGGTCTCA +
Preference number: 5 (lower is better)
Translates to: HAEEGSILYPVSNRV*VLEETCPPTSFRVS
Trigger: TGAGACCCTGAAGCTGGTGGGAGGACAAGTCTCCTCTAGGACTCAGACACGATTGGAAACTGGATACAAGATACTTCCTTCTTCTGCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 90 bp TCTTTAAGGACTGGTAGGGATATTTCTGAGGTGTCTAGCTGGTTCTaGCCACCATGGGCTGGCAGGTTTCTCTTTGGAATGCTTTGCTGG +
Preference number: 5 (lower is better)
Translates to: SLRTGRDISEVSSWF*PPWAGRFLFGMLCW
Trigger: CCAGCAAAGCATTCCAAAGAGAAACCTGCCAGCCCATGGTGGTCAGAACCAGCTAGACACCTCAGAAATATCCCTACCAGTCCTTAAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp AAGACTCATAAGTTCTTGGGAAACCAGGAATGGGGGATGAATAACTaGCTCCATGGTCTCCTCCACCTCACAGAAGGGATTCTCCTCGAA +
Preference number: 5 (lower is better)
Translates to: KTHKFLGNQEWGMNN*LHGLLHLTEGILLE
Trigger: TTCGAGGAGAATCCCTTCTGTGAGGTGGAGGAGACCATGGAGGCAGTTATTCATCCCCCATTCCTGGTTTCCCAAGAACTTATGAGTCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CTGGTCTACATAGTTGAGTTCCAGGCCAGCCAAAGTTACATGGTGAGATCCTGTCAGTTCCCAGTTGTGTaGGGCATCAGAGTTCATCTC +
Preference number: 5 (lower is better)
Translates to: LVYIVEFQASQSYMVRSCQFPVV*GIRVHL
Trigger: GAGATGAACTCTGATGCCCAACACAACTGGGAACTG...ACAGGATCTCACCATGTAACTTTGGCTGGCCTGGAACTCAACTATGTAGACCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp TCATCCCAATCCTTCACAACTTCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATTCCTCAAACCAAGGCTaGGCTCTGAGCACCTCTCCA +
Preference number: 5 (lower is better)
Translates to: SSQSFTTSFLQVESPEIHSSNQG*ALSTSP
Trigger: TGGAGAGGTGCTCAGAGCCAAGCCTTGGTTTGAGGA...ATGGATTTCAGGGCTTTCTACCTGGAGAAAGGAAGTTGTGAAGGATTGGGATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CTGAATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGTTGGCATGGTCCACCTaGGACAGAATTGCAATCTCT +
Preference number: 5 (lower is better)
Translates to: LNVTNFWELGPRNRHRHWLAWST*DRIAIS
Trigger: AGAGATTGCAATTCTGTCCAAGGTGGACCATGCCAA...CCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACATTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 90 bp ACACACTGCCCAACTACATCCTTTGGAGATGTGAACCCATGGAGATaGGCAAAGAGACTGTCGCATGATGTGATAGTTCCATCACTCTGG +
Preference number: 5 (lower is better)
Translates to: THCPTTSFGDVNPWR*AKRLSHDVIVPSLW
Trigger: CCAGAGTGATGGAACTATCACATCATGCGACAGTCTCTTTGCTCATCTCCATGGGTTCACATCTCCAAAGGATGTAGTTGGGCAGTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp CCCTCACAGCTTGACTTGGATAACTGTTCCTTAATCAAGCAAGTCTaGAGCTCTTCTCTGTCATTTCTCACTCCTGGCCATGGTTCATCC +
Preference number: 5 (lower is better)
Translates to: PSQLDLDNCSLIKQV*SSSLSFLTPGHGSS
Trigger: GGATGAACCATGGCCAGGAGTGAGAAATGACAGAGAAGAGCTGCAGACTTGCTTGATTAAGGAACAGTTATCCAAGTCAAGCTGTGAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp CAGGGATGGTGGTCAATGAAAGCAAAGAGGTCCATGCCAGAGCCGTaGTTTTCCATCACCAGCTGGAAGAACTCTTGGTTTTCGAATATA +
Preference number: 5 (lower is better)
Translates to: QGWWSMKAKRSMPEP*FSITSWKNSWFSNI
Trigger: TATATTCGAAAACCAAGAGTTCTTCCAGCTGGTGATGGAAAAGCACGGCTCTGGCATGGACCTCTTTGCTTTCATTGACCACCATCCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp AAACACTCCTTGTGTCTTTCTGAGGCTTACAACTTAAAGCCCTTTAATAGTACAGGCCGCTGGGCCTTCTaGGACAGGAGGACTCTCAGA +
Preference number: 5 (lower is better)
Translates to: KHSLCLSEAYNLKPFNSTGRWAF*DRRTLR
Trigger: TCTGAGAGTCCTCCTGTCCAAGAAGGCCCAGCGGCC...TGTACTATTAAAGGGCTTTAAGTTGTAAGCCTCAGAAAGACACAAGGAGTGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CTGGTCTACATAGTTGAGTTCCAGGCCAGCCAAAGTTACATGGTGAGATCCTGTGGGTTTTGTTGCACCTaGGATAACCATTTCCTGTGG +
Preference number: 5 (lower is better)
Translates to: LVYIVEFQASQSYMVRSCGFCCT*DNHFLW
Trigger: CCACAGGAAATGGTTATCCAAGGTGCAACAAAACCC...ACAGGATCTCACCATGTAACTTTGGCTGGCCTGGAACTCAACTATGTAGACCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CTGGTCTACATAGTTGAGTTCCAGGCCAGCCAAAGTTACATGGTGAGATCCTGTTGGAGCTCCACACGCTaGACTTCAAACTGTATACTC +
Preference number: 5 (lower is better)
Translates to: LVYIVEFQASQSYMVRSCWSSTR*TSNCIL
Trigger: GAGTATACAGTTTGAAGTCAAGCGTGTGGAGCTCCA...ACAGGATCTCACCATGTAACTTTGGCTGGCCTGGAACTCAACTATGTAGACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp ATGTCACTAACTTCTGGGAACTGGGTCCTAGAAACCGTCACAGACACTGGTAGGGTAACTCTTCCAAGTTaGGGATCCTCAATCCAGCAA +
Preference number: 5 (lower is better)
Translates to: MSLTSGNWVLETVTDTGRVTLPS*GSSIQQ
Trigger: TTGCTGGATTGAGGATCCCAAACTTGGAAGAGTTAC...CCTACCAGTGTCTGTGACGGTTTCTAGGACCCAGTTCCCAGAAGTTAGTGACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp AGTTTCATAGTGTTCAGAGGATACCAAAGAAATGTTAGACAGTTCTaGTCGATCATGTCCTGCTCCCATCTCCTGGAACCGTTGGCCTTC +
Preference number: 5 (lower is better)
Translates to: SFIVFRGYQRNVRQF*SIMSCSHLLEPLAF
Trigger: GAAGGCCAACGGTTCCAGGAGATGGGAGCAGGACATGATCGAGCAGAACTGTCTAACATTTCTTTGGTATCCTCTGAACACTATGAAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp TCCATGCCAGAGCCGTGCTTTTCCATCACCAGCTGGAAGAACTCTTaGTTTTCGAATATATCCAGAACCTTGATTATGTTGGCATGGTCC +
Preference number: 5 (lower is better)
Translates to: SMPEPCFSITSWKNS*FSNISRTLIMLAWS
Trigger: GGACCATGCCAACATAATCAAGGTTCTGGATATATTCGAAAACCAAGAGTTCTTCCAGCTGGTGATGGAAAAGCACGGCTCTGGCATGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CAGGAAGAACTGGGCATGGTGACACACACCATCAGTCCTAATGCTTGGGAGGCAGTGCACAGTATTCGATaGTTCCACAAAAGGTATAAA +
Preference number: 5 (lower is better)
Translates to: QEELGMVTHTISPNAWEAVHSIR*FHKRYK
Trigger: TTTATACCTTTTGTGGAACAATCGAATACTGTGCAC...TGCCTCCCAAGCATTAGGACTGATGGTGTGTGTCACCATGCCCAGTTCTTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp AGAGGATACCAAAGAAATGTTAGACAGTTCTGCTCGATCATGTCCTaGTCCCATCTCCTGGAACCGTTGGCCTTCACTAAGGTCAAAATA +
Preference number: 5 (lower is better)
Translates to: RGYQRNVRQFCSIMS*SHLLEPLAFTKVKI
Trigger: TATTTTGACCTTAGTGAAGGCCAACGGTTCCAGGAGATGGGAGCAGGACATGATCGAGCAGAACTGTCTAACATTTCTTTGGTATCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp TCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATACAACTGCCCAAACCAAAGAGAGATTTGAGGAAGAATaGGGCGAGCTTTTGGCCAAT +
Preference number: 5 (lower is better)
Translates to: SFLQVESPEIHTTAQTKERFEEE*GELLAN
Trigger: ATTGGCCAAAAGCTCGCCCAATTCTTCCTCAAATCT...CTCTTTGGTTTGGGCAGTTGTATGGATTTCAGGGCTTTCTACCTGGAGAAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACACCACGTCAATTCTaGGACCCTGGGCCCCACTGG +
Preference number: 5 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKTPRQF*DPGPHW
Trigger: CCAGTGGGGCCCAGGGTCCAAGAATTGACGTGGTGT...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGTCACCATCCTCTGGGTaGCTGTCCACCCCCAGTGAG +
Preference number: 5 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKSPSSG*LSTPSE
Trigger: CTCACTGGGGGTGGACAGCAACCCAGAGGATGGTGA...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp TCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATACAACTGCCCAAACCAAAGAGCCCTCACAGCTTGACTaGGATAACTGTTCCTTAATC +
Preference number: 5 (lower is better)
Translates to: SFLQVESPEIHTTAQTKEPSQLD*DNCSLI
Trigger: GATTAAGGAACAGTTATCCAAGTCAAGCTGTGAGGG...CTCTTTGGTTTGGGCAGTTGTATGGATTTCAGGGCTTTCTACCTGGAGAAAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp TCATCCCAATCCTTCACAACTTCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATAAGACTCATAAGTTCTaGGGAAACCAGGAATGGGGG +
Preference number: 5 (lower is better)
Translates to: SSQSFTTSFLQVESPEIHKTHKF*GNQEWG
Trigger: CCCCCATTCCTGGTTTCCCAAGAACTTATGAGTCTT...ATGGATTTCAGGGCTTTCTACCTGGAGAAAGGAAGTTGTGAAGGATTGGGATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp AAACACTCCTTGTGTCTTTCTGAGGCTTACAACTTAAAGCCCTTTAATAGTACATCCCAATCTCCAGACTaGCAGCTGACAGCAGGCCAC +
Preference number: 5 (lower is better)
Translates to: KHSLCLSEAYNLKPFNSTSQSPD*QLTAGH
Trigger: GTGGCCTGCTGTCAGCTGCAAGTCTGGAGATTGGGA...TGTACTATTAAAGGGCTTTAAGTTGTAAGCCTCAGAAAGACACAAGGAGTGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp GCTCAGAATCTTCACATGAAGCAAACAGTTTTGCATCCACTGGTTTaGACTTGCTTTCTTCTAAAAGACTCTCCCTGTAGCTCTCTGCTG +
Preference number: 5 (lower is better)
Translates to: AQNLHMKQTVLHPLV*TCFLLKDSPCSSLL
Trigger: CAGCAGAGAGCTACAGGGAGAGTCTTTTAGAAGAAAGCAAGTCCAAACCAGTGGATGCAAAACTGTTTGCTTCATGTGAAGATTCTGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp AAAGCAAAGAGGTCCATGCCAGAGCCGTGCTTTTCCATCACCAGCTaGAAGAACTCTTGGTTTTCGAATATATCCAGAACCTTGATTATG +
Preference number: 5 (lower is better)
Translates to: KAKRSMPEPCFSITS*KNSWFSNISRTLIM
Trigger: CATAATCAAGGTTCTGGATATATTCGAAAACCAAGAGTTCTTCCAGCTGGTGATGGAAAAGCACGGCTCTGGCATGGACCTCTTTGCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACGCTATGGAGAGTGGCTaGCTGGGCTCAAAGGTAGCC +
Preference number: 5 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDAMESG*LGSKVA
Trigger: GGCTACCTTTGAGCCCAGCAAGCCACTCTCCATAGC...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 90 bp AGGAGCAACATCTCTCGGTCAACTAAAATATCTGAAGTCTGCCTATaGAGAATACCCACATCTAAATCTGACCCCACCACTGAAAGAGAT +
Preference number: 5 (lower is better)
Translates to: RSNISRSTKISEVCL*RIPTSKSDPTTERD
Trigger: ATCTCTTTCAGTGGTGGGGTCAGATTTAGATGTGGGTATTCTGCATAGGCAGACTTCAGATATTTTAGTTGACCGAGAGATGTTGCTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACTTCCTGCTCAGGTGTTaGTGGGCTATGGAGAGTGGC +
Preference number: 5 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDFLLRC*WAMESG
Trigger: GCCACTCTCCATAGCCCACAAACACCTGAGCAGGAA...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACTCTTTGGGATATGTaGGCCAGGAGGAGGGAGCTG +
Preference number: 5 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKTLWDM*ARRREL
Trigger: CAGCTCCCTCCTCCTGGCCAACATATCCCAAAGAGT...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp TCATCCCAATCCTTCACAACTTCCTTTCTCCAGGTAGAAAGCCCTGAAATCCATTCCACTGGTTTGGACTaGCTTTCTTCTAAAAGACTC +
Preference number: 5 (lower is better)
Translates to: SSQSFTTSFLQVESPEIHSTGLD*LSSKRL
Trigger: GAGTCTTTTAGAAGAAAGCAAGTCCAAACCAGTGGA...ATGGATTTCAGGGCTTTCTACCTGGAGAAAGGAAGTTGTGAAGGATTGGGATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACCCACTTTCTGGCTGGTaGGTCCTACACACCTCTTCC +
Preference number: 5 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDPLSGW*VLHTSS
Trigger: GGAAGAGGTGTGTAGGACCAACCAGCCAGAAAGTGG...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 90 bp TCACCAGCTGGAAGAACTCTTGGTTTTCGAATATATCCAGAACCTTaGTTATGTTGGCATGGTCCACCTTGGACAGAATTGCAATCTCTA +
Preference number: 5 (lower is better)
Translates to: SPAGRTLGFRIYPEP*LCWHGPPWTELQSL
Trigger: TAGAGATTGCAATTCTGTCCAAGGTGGACCATGCCAACATAATCAAGGTTCTGGATATATTCGAAAACCAAGAGTTCTTCCAGCTGGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACCGCAGTGCAGTTTGCTaGTGCAGATGTTTTGGGCAG +
Preference number: 5 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDRSAVC*CRCFGQ
Trigger: CTGCCCAAAACATCTGCACAAGCAAACTGCACTGCG...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGCTGCAGGCTTTGTCGTaGGCAACCAGAATCTCTGTG +
Preference number: 5 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKLQALS*ATRISV
Trigger: CACAGAGATTCTGGTTGCCAACGACAAAGCCTGCAG...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACGCCCTTCCACTGGGCTaGGATTTCAGCTTCAAACTG +
Preference number: 5 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDALPLG*DFSFKL
Trigger: CAGTTTGAAGCTGAAATCCAAGCCCAGTGGAAGGGC...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGCTAGCTCTGCAGGTGTaGGGGATTCCTCAAACCAAG +
Preference number: 5 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKLALQV*GIPQTK
Trigger: CTTGGTTTGAGGAATCCCCAACACCTGCAGAGCTAG...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp AAACACTCCTTGTGTCTTTCTGAGGCTTACAACTTAAAGCCCTTTAATAGTACAAGAATCTCTGTGGTCTaGGCATCCACGGTAAAGACA +
Preference number: 5 (lower is better)
Translates to: KHSLCLSEAYNLKPFNSTRISVV*ASTVKT
Trigger: TGTCTTTACCGTGGATGCCAAGACCACAGAGATTCT...TGTACTATTAAAGGGCTTTAAGTTGTAAGCCTCAGAAAGACACAAGGAGTGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp AAACACTCCTTGTGTCTTTCTGAGGCTTACAACTTAAAGCCCTTTAATAGTACAAGGAAAGTGATATTCTaGCCCAGGAGCTCTGTCTTT +
Preference number: 5 (lower is better)
Translates to: KHSLCLSEAYNLKPFNSTRKVIF*PRSSVF
Trigger: AAAGACAGAGCTCCTGGGCAAGAATATCACTTTCCT...TGTACTATTAAAGGGCTTTAAGTTGTAAGCCTCAGAAAGACACAAGGAGTGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGTTCACCACCACCTCTTaGTTGCATTCCTTCTCCACT +
Preference number: 5 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKFTTTS*LHSFST
Trigger: AGTGGAGAAGGAATGCAACAAAGAGGTGGTGGTGAA...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACTCTGAGCCATTTCACTaGGACTCCTACTCCCAATCT +
Preference number: 5 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDSEPFH*DSYSQS
Trigger: AGATTGGGAGTAGGAGTCCAAGTGAAATGGCTCAGA...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 90 bp AACTCTTGGTTTTCGAATATATCCAGAACCTTGATTATGTTGGCATaGTCCACCTTGGACAGAATTGCAATCTCTAAAGTAACTCTTCCA +
Preference number: 5 (lower is better)
Translates to: NSWFSNISRTLIMLA*STLDRIAISKVTLP
Trigger: TGGAAGAGTTACTTTAGAGATTGCAATTCTGTCCAAGGTGGACCATGCCAACATAATCAAGGTTCTGGATATATTCGAAAACCAAGAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACTCTCCCAACAGACCTTaGAATCTTGAGACTCTTTGG +
Preference number: 5 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDSPNRP*NLETLW
Trigger: CCAAAGAGTCTCAAGATTCAAAGGTCTGTTGGGAGA...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGCAGCTGGAAGAACTCTaGGTTTTCGAATATATCCAG +
Preference number: 5 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKQLEEL*VFEYIQ
Trigger: CTGGATATATTCGAAAACCAAGAGTTCTTCCAGCTG...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp CTGTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGGAAGAAGGAAGTATCTaGTATCCAGTTTCCAATCGT +
Preference number: 5 (lower is better)
Translates to: LSGGKNNSAISCVLCVIKEEGSI*YPVSNR
Trigger: ACGATTGGAAACTGGATACAAGATACTTCCTTCTTC...CTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGACAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS-3UTR CAA 90 bp GTCTGGGGGAAAGAACAATTCTGCAATATCTTGTGTTTTATGTGTAATAAAGACTTTGCATCCACTGGTTaGGACTTGCTTTCTTCTAAA +
Preference number: 5 (lower is better)
Translates to: VWGKEQFCNILCFMCNKDFASTG*DLLSSK
Trigger: TTTAGAAGAAAGCAAGTCCAAACCAGTGGATGCAAA...GTCTTTATTACACATAAAACACAAGATATTGCAGAATTGTTCTTTCCCCCAGAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp GTGTCCCAAGCAAGACACACGCCATTCCAGAGGGGCTaGGAGCCGAGTCCTGGCCTCGCTGCTGTGAGGCCC +
Preference number: 6 (lower is better)
Translates to: VSQARHTPFQRG*EPSPGLAAVRP
Trigger: GGGCCTCACAGCAGCGAGGCCAGGACTCGGCTCCCAGCCCCTCTGGAATGGCGTGTGTCTTGCTTGGGACAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp GCAGGCTGGTGGCCCCACGTGCCACAGGAGTGGAAGTaGTCTGGGCACTCGGCCTGGGCTTCTCTGCTGATA +
Preference number: 6 (lower is better)
Translates to: AGWWPHVPQEWK*SGHSAWASLLI
Trigger: TATCAGCAGAGAAGCCCAGGCCGAGTGCCCAGATCACTTCCACTCCTGTGGCACGTGGGGCCACCAGCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp CTCTTGGATCTCCTGCTGCAGGCTGGTGGCCCCACGTaGCACAGGAGTGGAAGTGATCTGGGCACTCGGCCT +
Preference number: 6 (lower is better)
Translates to: LLDLLLQAGGPT*HRSGSDLGTRP
Trigger: AGGCCGAGTGCCCAGATCACTTCCACTCCTGTGGCACGTGGGGCCACCAGCCTGCAGCAGGAGATCCAAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp CTGGTGGCCCCACGTGCCACAGGAGTGGAAGTGATCTaGGCACTCGGCCTGGGCTTCTCTGCTGATAGGCAC +
Preference number: 6 (lower is better)
Translates to: LVAPRATGVEVI*ALGLGFSADRH
Trigger: GTGCCTATCAGCAGAGAAGCCCAGGCCGAGTGCCCAGATCACTTCCACTCCTGTGGCACGTGGGGCCACCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp GCAAGGAACAGGCGGGTTCGTGTGGCTGAGTCCCGGTaGCTATGGAAGAGGTCCTTCACCAGCCAGCAGCAG +
Preference number: 6 (lower is better)
Translates to: ARNRRVRVAESR*LWKRSFTSQQQ
Trigger: CTGCTGCTGGCTGGTGAAGGACCTCTTCCATAGCCACCGGGACTCAGCCACACGAACCCGCCTGTTCCTTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp AGGCAGACTGGCAAGGAACAGGCGGGTTCGTGTGGCTaGGTCCCGGTGGCTATGGAAGAGGTCCTTCACCAG +
Preference number: 6 (lower is better)
Translates to: RQTGKEQAGSCG*VPVAMEEVLHQ
Trigger: CTGGTGAAGGACCTCTTCCATAGCCACCGGGACTCAGCCACACGAACCCGCCTGTTCCTTGCCAGTCTGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp GTAAGCCATCCCGGTGGTAGCAGCTTCCAGAGTAGATaGCCTCTTGGATCTCCTGCTGCAGGCTGGTGGCCC +
Preference number: 6 (lower is better)
Translates to: VSHPGGSSFQSR*PLGSPAAGWWP
Trigger: GGGCCACCAGCCTGCAGCAGGAGATCCAAGAGGGCATCTACTCTGGAAGCTGCTACCACCGGGATGGCTTAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp GGACCCTGGGCCCCACTGGCCAGTTCCCAGTTGTGTTaGGCATCAGAGTTCATCTCCCCAGGCCCACTCTTT +
Preference number: 6 (lower is better)
Translates to: GPWAPLASSQLC*ASEFISPGPLF
Trigger: AAAGAGTGGGCCTGGGGAGATGAACTCTGATGCCCAACACAACTGGGAACTGGCCAGTGGGGCCCAGGGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp TGGTCCCGTGCCAACACCACGTCAATTCTTGGACCCTaGGCCCCACTGGCCAGTTCCCAGTTGTGTTGGGCA +
Preference number: 6 (lower is better)
Translates to: WSRANTTSILGP*APLASSQLCWA
Trigger: TGCCCAACACAACTGGGAACTGGCCAGTGGGGCCCAGGGTCCAAGAATTGACGTGGTGTTGGCACGGGACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp AACAGGCGGGTTCGTGTGGCTGAGTCCCGGTGGCTATaGAAGAGGTCCTTCACCAGCCAGCAGCAGAACAGG +
Preference number: 6 (lower is better)
Translates to: NRRVRVAESRWL*KRSFTSQQQNR
Trigger: CCTGTTCTGCTGCTGGCTGGTGAAGGACCTCTTCCATAGCCACCGGGACTCAGCCACACGAACCCGCCTGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp CAGGGGTCCCTGATCAGCTTCTCCAAAGTGGTCCGCTaGTCAGGGCAAGGCTGCAGCAGTCCAGACAGAAGA +
Preference number: 6 (lower is better)
Translates to: QGSLISFSKVVR*SGQGCSSPDRR
Trigger: TCTTCTGTCTGGACTGCTGCAGCCTTGCCCTGAGCAGCGGACCACTTTGGAGAAGCTGATCAGGGACCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp GAGTGGCTTGCTGGGCTCAAAGGTAGCCTGGGCCGCTaGGCCTTCTTGGACAGGAGGACTCTCAGACAAACA +
Preference number: 6 (lower is better)
Translates to: EWLAGLKGSLGR*AFLDRRTLRQT
Trigger: TGTTTGTCTGAGAGTCCTCCTGTCCAAGAAGGCCCAGCGGCCCAGGCTACCTTTGAGCCCAGCAAGCCACTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp ACTGGCAAAGAGGGGTCCTTAAGATGCAAGCAGTGCTaGTCACCACGAGTCTCCCTGGGAGCAGGAGGCCCA +
Preference number: 6 (lower is better)
Translates to: TGKEGSLRCKQC*SPRVSLGAGGP
Trigger: TGGGCCTCCTGCTCCCAGGGAGACTCGTGGTGACCAGCACTGCTTGCATCTTAAGGACCCCTCTTTGCCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 90 bp GGTTCAGAGGCCGCCTCACTGTCAGCTACAGCCCTTCCACTGGGCTaGGATTTCAGCTTCAAACTGAGAGGGAAGGTGGTGCCGTCTCTG +
Preference number: 6 (lower is better)
Translates to: GSEAASLSATALPLG*DFSFKLRGKVVPSL
Trigger: CAGAGACGGCACCACCTTCCCTCTCAGTTTGAAGCTGAAATCCAAGCCCAGTGGAAGGGCTGTAGCTGACAGTGAGGCGGCCTCTGAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 90 bp ACCACGTCAATTCTTGGACCCTGGGCCCCACTGGCCAGTTCCCAGTaGTGTTGGGCATCAGAGTTCATCTCCCCAGGCCCACTCTTTCTG +
Preference number: 6 (lower is better)
Translates to: TTSILGPWAPLASSQ*CWASEFISPGPLFL
Trigger: CAGAAAGAGTGGGCCTGGGGAGATGAACTCTGATGCCCAACACAACTGGGAACTGGCCAGTGGGGCCCAGGGTCCAAGAATTGACGTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 90 bp CATCTTGTGATGGCATGTGGTCCCGTGCCAACACCACGTCAATTCTaGGACCCTGGGCCCCACTGGCCAGTTCCCAGTTGTGTTGGGCAT +
Preference number: 6 (lower is better)
Translates to: HLVMACGPVPTPRQF*DPGPHWPVPSCVGH
Trigger: ATGCCCAACACAACTGGGAACTGGCCAGTGGGGCCCAGGGTCCAAGAATTGACGTGGTGTTGGCACGGGACCACATGCCATCACAAGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 90 bp AGCCCCTCTAGCTCTGCAGGTGTTGGGGATTCCTCAAACCAAGGCTaGGCTCTGAGCACCTCTCCAAAGCTGGATCCAGACAGCTCAGGC +
Preference number: 6 (lower is better)
Translates to: SPSSSAGVGDSSNQG*ALSTSPKLDPDSSG
Trigger: GCCTGAGCTGTCTGGATCCAGCTTTGGAGAGGTGCTCAGAGCCAAGCCTTGGTTTGAGGAATCCCCAACACCTGCAGAGCTAGAGGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp GCCCAGTGGCCCAGCTGTAGGGTCAGCATACTCAGGTaGAGCAGCGCAGTGCAGTTTGCTTGTGCAGATGTT +
Preference number: 6 (lower is better)
Translates to: AQWPSCRVSILR*SSAVQFACADV
Trigger: AACATCTGCACAAGCAAACTGCACTGCGCTGCTGCACCTGAGTATGCTGACCCTACAGCTGGGCCACTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp TACTGTGGGCAATATGTAAGGCTCCCGCCTGCTATCTaGCCTGTGGTGTGGGGCTCAGGCATGGTGGCATCA +
Preference number: 6 (lower is better)
Translates to: YCGQYVRLPPAI*PVVWGSGMVAS
Trigger: TGATGCCACCATGCCTGAGCCCCACACCACAGGGCAGATAGCAGGCGGGAGCCTTACATATTGCCCACAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp GCTTCTGTACTGTGGGCAATATGTAAGGCTCCCGCCTaGTATCTGCCCTGTGGTGTGGGGCTCAGGCATGGT +
Preference number: 6 (lower is better)
Translates to: ASVLWAICKAPA*YLPCGVGLRHG
Trigger: ACCATGCCTGAGCCCCACACCACAGGGCAGATAGCAGGCGGGAGCCTTACATATTGCCCACAGTACAGAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp CTGGGCTCAAAGGTAGCCTGGGCCGCTGGGCCTTCTTaGACAGGAGGACTCTCAGACAAACATTTCCAGTCC +
Preference number: 6 (lower is better)
Translates to: LGSKVAWAAGPS*TGGLSDKHFQS
Trigger: GGACTGGAAATGTTTGTCTGAGAGTCCTCCTGTCCAAGAAGGCCCAGCGGCCCAGGCTACCTTTGAGCCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp ATTCTTCCTGCTCAGGTGTTTGTGGGCTATGGAGAGTaGCTTGCTGGGCTCAAAGGTAGCCTGGGCCGCTGG +
Preference number: 6 (lower is better)
Translates to: ILPAQVFVGYGE*LAGLKGSLGRW
Trigger: CCAGCGGCCCAGGCTACCTTTGAGCCCAGCAAGCCACTCTCCATAGCCCACAAACACCTGAGCAGGAAGAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp GAGCTCCACCTGTCCTCAGAGAGCGCCATTCGGCTCTaGCAGAGTCTAGAAAGCCCATTCTTCCTGCTCAGG +
Preference number: 6 (lower is better)
Translates to: ELHLSSESAIRL*QSLESPFFLLR
Trigger: CCTGAGCAGGAAGAATGGGCTTTCTAGACTCTGCCAGAGCCGAATGGCGCTCTCTGAGGACAGGTGGAGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp GCTGGGCTCAAAGGTAGCCTGGGCCGCTGGGCCTTCTaGGACAGGAGGACTCTCAGACAAACATTTCCAGTC +
Preference number: 6 (lower is better)
Translates to: AGLKGSLGRWAF*DRRTLRQTFPV
Trigger: GACTGGAAATGTTTGTCTGAGAGTCCTCCTGTCCAAGAAGGCCCAGCGGCCCAGGCTACCTTTGAGCCCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 90 bp CGGCTCTGGCAGAGTCTAGAAAGCCCATTCTTCCTGCTCAGGTGTTaGTGGGCTATGGAGAGTGGCTTGCTGGGCTCAAAGGTAGCCTGG +
Preference number: 6 (lower is better)
Translates to: RLWQSLESPFFLLRC*WAMESGLLGSKVAW
Trigger: CCAGGCTACCTTTGAGCCCAGCAAGCCACTCTCCATAGCCCACAAACACCTGAGCAGGAAGAATGGGCTTTCTAGACTCTGCCAGAGCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 90 bp ATCTCTGTGGTCTTGGCATCCACGGTAAAGACAGCCTTGTTGGGGTaGCACACAGGGGTCGAAAGCAGGGACCCAGAGCATCCTGAAGCC +
Preference number: 6 (lower is better)
Translates to: ISVVLASTVKTALLG*HTGVESRDPEHPEA
Trigger: GGCTTCAGGATGCTCTGGGTCCCTGCTTTCGACCCCTGTGTGCAACCCCAACAAGGCTGTCTTTACCGTGGATGCCAAGACCACAGAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 90 bp GTCAATTCTTGGACCCTGGGCCCCACTGGCCAGTTCCCAGTTGTGTaGGGCATCAGAGTTCATCTCCCCAGGCCCACTCTTTCTGCCAAT +
Preference number: 6 (lower is better)
Translates to: VNSWTLGPTGQFPVV*GIRVHLPRPTLSAN
Trigger: ATTGGCAGAAAGAGTGGGCCTGGGGAGATGAACTCTGATGCCCAACACAACTGGGAACTGGCCAGTGGGGCCCAGGGTCCAAGAATTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp CTCGGCCTCCCAGATCACAGAAAGACACGGGGGCGGTaGAAGGAGGATGTTCTTCAGGAACGAGTTCCACAC +
Preference number: 6 (lower is better)
Translates to: LGLPDHRKTRGR*KEDVLQERVPH
Trigger: GTGTGGAACTCGTTCCTGAAGAACATCCTCCTTTCACCGCCCCCGTGTCTTTCTGTGATCTGGGAGGCCGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp GGAATAAGAATTCACATCAGCCTCCTGAGCTTCCACTaGCTCCAGGACACCAGGGAGGTCGGTGGCCAAAGC +
Preference number: 6 (lower is better)
Translates to: GIRIHISLLSFH*LQDTREVGGQS
Trigger: GCTTTGGCCACCGACCTCCCTGGTGTCCTGGAGGCAGTGGAAGCTCAGGAGGCTGATGTGAATTCTTATTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp CCAACACCACGTCAATTCTTGGACCCTGGGCCCCACTaGCCAGTTCCCAGTTGTGTTGGGCATCAGAGTTCA +
Preference number: 6 (lower is better)
Translates to: PTPRQFLDPGPH*PVPSCVGHQSS
Trigger: TGAACTCTGATGCCCAACACAACTGGGAACTGGCCAGTGGGGCCCAGGGTCCAAGAATTGACGTGGTGTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp TCGGCCTGGGCTTCTCTGCTGATAGGCACATATCGTTaGGACCAGGATCTGGTAAGGGAGGGTCACAACCTG +
Preference number: 6 (lower is better)
Translates to: SAWASLLIGTYR*DQDLVREGHNL
Trigger: CAGGTTGTGACCCTCCCTTACCAGATCCTGGTCCCAACGATATGTGCCTATCAGCAGAGAAGCCCAGGCCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp GTCTTGGCATCCACGGTAAAGACAGCCTTGTTGGGGTaGCACACAGGGGTCGAAAGCAGGGACCCAGAGCAT +
Preference number: 6 (lower is better)
Translates to: VLASTVKTALLG*HTGVESRDPEH
Trigger: ATGCTCTGGGTCCCTGCTTTCGACCCCTGTGTGCAACCCCAACAAGGCTGTCTTTACCGTGGATGCCAAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp TCTGTGGTCTTGGCATCCACGGTAAAGACAGCCTTGTaGGGGTTGCACACAGGGGTCGAAAGCAGGGACCCA +
Preference number: 6 (lower is better)
Translates to: SVVLASTVKTAL*GLHTGVESRDP
Trigger: TGGGTCCCTGCTTTCGACCCCTGTGTGCAACCCCAACAAGGCTGTCTTTACCGTGGATGCCAAGACCACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp CTCGGCCTGGGCTTCTCTGCTGATAGGCACATATCGTaGGGACCAGGATCTGGTAAGGGAGGGTCACAACCT +
Preference number: 6 (lower is better)
Translates to: LGLGFSADRHIS*GPGSGKGGSQP
Trigger: AGGTTGTGACCCTCCCTTACCAGATCCTGGTCCCAACGATATGTGCCTATCAGCAGAGAAGCCCAGGCCGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 90 bp ACCAGAATCTCTGTGGTCTTGGCATCCACGGTAAAGACAGCCTTGTaGGGGTTGCACACAGGGGTCGAAAGCAGGGACCCAGAGCATCCT +
Preference number: 6 (lower is better)
Translates to: TRISVVLASTVKTAL*GLHTGVESRDPEHP
Trigger: AGGATGCTCTGGGTCCCTGCTTTCGACCCCTGTGTGCAACCCCAACAAGGCTGTCTTTACCGTGGATGCCAAGACCACAGAGATTCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 90 bp GCAACCAGAATCTCTGTGGTCTTGGCATCCACGGTAAAGACAGCCTaGTTGGGGTTGCACACAGGGGTCGAAAGCAGGGACCCAGAGCAT +
Preference number: 6 (lower is better)
Translates to: ATRISVVLASTVKTA*LGLHTGVESRDPEH
Trigger: ATGCTCTGGGTCCCTGCTTTCGACCCCTGTGTGCAACCCCAACAAGGCTGTCTTTACCGTGGATGCCAAGACCACAGAGATTCTGGTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp TCCACACAGAGACTGGAATCTTCTCCCCAATTCGGCTaGCGATGTCCACCACTGTGCCGAACACCACTGCAG +
Preference number: 6 (lower is better)
Translates to: STQRLESSPQFG*RCPPLCRTPLQ
Trigger: CTGCAGTGGTGTTCGGCACAGTGGTGGACATCGTCAGCCGAATTGGGGAGAAGATTCCAGTCTCTGTGTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp GACTTGTCCTCCCACCAGCTTCAGGGTCTCATCTTGTaGTGGCATGTGGTCCCGTGCCAACACCACGTCAAT +
Preference number: 6 (lower is better)
Translates to: DLSSHQLQGLIL*WHVVPCQHHVN
Trigger: ATTGACGTGGTGTTGGCACGGGACCACATGCCATCACAAGATGAGACCCTGAAGCTGGTGGGAGGACAAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp TCGCCAGGGGCTCATCCAAGCAGGGATGGTGGTCAATaGAAGCAAAGAGGTCCATGCCAGAGCCGTGCTTTT +
Preference number: 6 (lower is better)
Translates to: SPGAHPSRDGGQ*KQRGPCQSRAF
Trigger: AAAAGCACGGCTCTGGCATGGACCTCTTTGCTTTCATTGACCACCATCCCTGCTTGGATGAGCCCCTGGCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp TTCACCAGCCAGCAGCAGAACAGGGTCGCAGAGCCCTaGAGCTCCACACGCTTGACTTCAAACTGTATACTC +
Preference number: 6 (lower is better)
Translates to: FTSQQQNRVAEP*SSTRLTSNCIL
Trigger: GAGTATACAGTTTGAAGTCAAGCGTGTGGAGCTCCAGGGCTCTGCGACCCTGTTCTGCTGCTGGCTGGTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp ATGAAACTCGCCAGGGGCTCATCCAAGCAGGGATGGTaGTCAATGAAAGCAAAGAGGTCCATGCCAGAGCCG +
Preference number: 6 (lower is better)
Translates to: MKLARGSSKQGW*SMKAKRSMPEP
Trigger: CGGCTCTGGCATGGACCTCTTTGCTTTCATTGACCACCATCCCTGCTTGGATGAGCCCCTGGCGAGTTTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp ATCTCTGTGGTCTTGGCATCCACGGTAAAGACAGCCTaGTTGGGGTTGCACACAGGGGTCGAAAGCAGGGAC +
Preference number: 6 (lower is better)
Translates to: ISVVLASTVKTA*LGLHTGVESRD
Trigger: GTCCCTGCTTTCGACCCCTGTGTGCAACCCCAACAAGGCTGTCTTTACCGTGGATGCCAAGACCACAGAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp AGCTCTGCAGGTGTTGGGGATTCCTCAAACCAAGGCTaGGCTCTGAGCACCTCTCCAAAGCTGGATCCAGAC +
Preference number: 6 (lower is better)
Translates to: SSAGVGDSSNQG*ALSTSPKLDPD
Trigger: GTCTGGATCCAGCTTTGGAGAGGTGCTCAGAGCCAAGCCTTGGTTTGAGGAATCCCCAACACCTGCAGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp GAGGCCCACAGAGACCCTCTCTCTGAGCCATTTCACTaGGACTCCTACTCCCAATCTCCAGACTTGCAGCTG +
Preference number: 6 (lower is better)
Translates to: EAHRDPLSEPFH*DSYSQSPDLQL
Trigger: CAGCTGCAAGTCTGGAGATTGGGAGTAGGAGTCCAAGTGAAATGGCTCAGAGAGAGGGTCTCTGTGGGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 90 bp ACTGAGAGGGAAGGTGGTGCCGTCTCTGGCTCTCCCAACAGACCTTaGAATCTTGAGACTCTTTGGGATATGTTGGCCAGGAGGAGGGAG +
Preference number: 6 (lower is better)
Translates to: TEREGGAVSGSPNRP*NLETLWDMLARRRE
Trigger: CTCCCTCCTCCTGGCCAACATATCCCAAAGAGTCTCAAGATTCAAAGGTCTGTTGGGAGAGCCAGAGACGGCACCACCTTCCCTCTCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp TGTGATAGTTCCATCACTCTGGAAGGCGACCCAGGCTaGCACTCTCTCCACAGGCTCCAGAACCACTACACA +
Preference number: 6 (lower is better)
Translates to: CDSSITLEGDPG*HSLHRLQNHYT
Trigger: TGTGTAGTGGTTCTGGAGCCTGTGGAGAGAGTGTCAGCCTGGGTCGCCTTCCAGAGTGATGGAACTATCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp GCTGTAGGGTCAGCATACTCAGGTGCAGCAGCGCAGTaGAGTTTGCTTGTGCAGATGTTTTGGGCAGCCAAT +
Preference number: 6 (lower is better)
Translates to: AVGSAYSGAAAQ*SLLVQMFWAAN
Trigger: ATTGGCTGCCCAAAACATCTGCACAAGCAAACTGCACTGCGCTGCTGCACCTGAGTATGCTGACCCTACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp GGCCAATCAGGTCATGACTGCTATACCCTAGGAGGCTaGAGGCTTTGTCGTTGGCAACCAGAATCTCTGTGG +
Preference number: 6 (lower is better)
Translates to: GQSGHDCYTLGG*RLCRWQPESLW
Trigger: CCACAGAGATTCTGGTTGCCAACGACAAAGCCTGCAGCCTCCTAGGGTATAGCAGTCATGACCTGATTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp CTTCACCACCACCTCTTTGTTGCATTCCTTCTCCACTaGAGTCCACACAAAGCCAAAGGCCCCACTGCCAAG +
Preference number: 6 (lower is better)
Translates to: LHHHLFVAFLLH*SPHKAKGPTAK
Trigger: CTTGGCAGTGGGGCCTTTGGCTTTGTGTGGACTGCAGTGGAGAAGGAATGCAACAAAGAGGTGGTGGTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp CCATGGGCTGGCAGGTTTCTCTTTGGAATGCTTTGCTaGTCTGTGAGCAATGACTGCTCACCATCCTCTGGG +
Preference number: 6 (lower is better)
Translates to: PWAGRFLFGMLC*SVSNDCSPSSG
Trigger: CCCAGAGGATGGTGAGCAGTCATTGCTCACAGACCAGCAAAGCATTCCAAAGAGAAACCTGCCAGCCCATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp GCTGAAGGATCCTCCTTTCCCAAGACATGGATATGCTaGCCTGCAAACAATAGCTGCTCCTCGTGGATGGGC +
Preference number: 6 (lower is better)
Translates to: AEGSSFPKTWIC*PANNSCSSWMG
Trigger: GCCCATCCACGAGGAGCAGCTATTGTTTGCAGGCCAGCATATCCATGTCTTGGGAAAGGAGGATCCTTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp TGTCATTTCTCACTCCTGGCCATGGTTCATCCAGAGTaGGTGTCCCAAGCAAGACACACGCCATTCCAGAGG +
Preference number: 6 (lower is better)
Translates to: CHFSLLAMVHPE*VSQARHTPFQR
Trigger: CCTCTGGAATGGCGTGTGTCTTGCTTGGGACACCCACTCTGGATGAACCATGGCCAGGAGTGAGAAATGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp TCCTCGCTGAGGGCTTCCACCACCTCGGAATCAGATTaGAGGAAGAATTGGGCGAGCTTTTGGCCAATCAGG +
Preference number: 6 (lower is better)
Translates to: SSLRASTTSESD*RKNWASFWPIR
Trigger: CCTGATTGGCCAAAAGCTCGCCCAATTCTTCCTCAAATCTGATTCCGAGGTGGTGGAAGCCCTCAGCGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp CCATTTCACTTGGACTCCTACTCCCAATCTCCAGACTaGCAGCTGACAGCAGGCCACTTTCTGGCTGGTTGG +
Preference number: 6 (lower is better)
Translates to: PFHLDSYSQSPD*QLTAGHFLAGW
Trigger: CCAACCAGCCAGAAAGTGGCCTGCTGTCAGCTGCAAGTCTGGAGATTGGGAGTAGGAGTCCAAGTGAAATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp AGGAAGAATTGGGCGAGCTTTTGGCCAATCAGGTCATaGCTGCTATACCCTAGGAGGCTGCAGGCTTTGTCG +
Preference number: 6 (lower is better)
Translates to: RKNWASFWPIRS*LLYPRRLQALS
Trigger: CGACAAAGCCTGCAGCCTCCTAGGGTATAGCAGTCATGACCTGATTGGCCAAAAGCTCGCCCAATTCTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp TGCCGTCTCTGGCTCTCCCAACAGACCTTTGAATCTTaGGACTCTTTGGGATATGTTGGCCAGGAGGAGGGA +
Preference number: 6 (lower is better)
Translates to: CRLWLSQQTFES*DSLGYVGQEEG
Trigger: TCCCTCCTCCTGGCCAACATATCCCAAAGAGTCTCAAGATTCAAAGGTCTGTTGGGAGAGCCAGAGACGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp AGAACAGGGTCGCAGAGCCCTGGAGCTCCACACGCTTaGCTTCAAACTGTATACTCAGTTGTAAGCCATCCC +
Preference number: 6 (lower is better)
Translates to: RTGSQSPGAPHA*LQTVYSVVSHP
Trigger: GGGATGGCTTACAACTGAGTATACAGTTTGAAGTCAAGCGTGTGGAGCTCCAGGGCTCTGCGACCCTGTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp TCCACACAAAGCCAAAGGCCCCACTGCCAAGTGGGCTaGTGGTGTTATACTTATAGTCGTACTCGCCCTCAC +
Preference number: 6 (lower is better)
Translates to: STQSQRPHCQVG*WCYTYSRTRPH
Trigger: GTGAGGGCGAGTACGACTATAAGTATAACACCATCAGCCCACTTGGCAGTGGGGCCTTTGGCTTTGTGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp GCAGGTATCCTACAGCAGACACTAGTTGTCGAAAGATaGAACTCGCCAGGGGCTCATCCAAGCAGGGATGGT +
Preference number: 6 (lower is better)
Translates to: AGILQQTLVVER*NSPGAHPSRDG
Trigger: ACCATCCCTGCTTGGATGAGCCCCTGGCGAGTTTCATCTTTCGACAACTAGTGTCTGCTGTAGGATACCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp AGAATTGGGCGAGCTTTTGGCCAATCAGGTCATGACTaGTATACCCTAGGAGGCTGCAGGCTTTGTCGTTGG +
Preference number: 6 (lower is better)
Translates to: RIGRAFGQSGHD*YTLGGCRLCRW
Trigger: CCAACGACAAAGCCTGCAGCCTCCTAGGGTATAGCAGTCATGACCTGATTGGCCAAAAGCTCGCCCAATTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp CCACCATGGGCTGGCAGGTTTCTCTTTGGAATGCTTTaGTGGTCTGTGAGCAATGACTGCTCACCATCCTCT +
Preference number: 6 (lower is better)
Translates to: PPWAGRFLFGML*WSVSNDCSPSS
Trigger: AGAGGATGGTGAGCAGTCATTGCTCACAGACCAGCAAAGCATTCCAAAGAGAAACCTGCCAGCCCATGGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp GCTGCTGAAGGATCCTCCTTTCCCAAGACATGGATATaGTGGCCTGCAAACAATAGCTGCTCCTCGTGGATG +
Preference number: 6 (lower is better)
Translates to: AAEGSSFPKTWI*WPANNSCSSWM
Trigger: CATCCACGAGGAGCAGCTATTGTTTGCAGGCCAGCATATCCATGTCTTGGGAAAGGAGGATCCTTCAGCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp CTCTCTGCTGCTGAAGGATCCTCCTTTCCCAAGACATaGATATGCTGGCCTGCAAACAATAGCTGCTCCTCG +
Preference number: 6 (lower is better)
Translates to: LSAAEGSSFPKT*ICWPANNSCSS
Trigger: CGAGGAGCAGCTATTGTTTGCAGGCCAGCATATCCATGTCTTGGGAAAGGAGGATCCTTCAGCAGCAGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp CTGCAGCTCTTCTCTGTCATTTCTCACTCCTGGCCATaGTTCATCCAGAGTGGGTGTCCCAAGCAAGACACA +
Preference number: 6 (lower is better)
Translates to: LQLFSVISHSWP*FIQSGCPKQDT
Trigger: TGTGTCTTGCTTGGGACACCCACTCTGGATGAACCATGGCCAGGAGTGAGAAATGACAGAGAAGAGCTGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp AAGATGAAACTCGCCAGGGGCTCATCCAAGCAGGGATaGTGGTCAATGAAAGCAAAGAGGTCCATGCCAGAG +
Preference number: 6 (lower is better)
Translates to: KMKLARGSSKQG*WSMKAKRSMPE
Trigger: CTCTGGCATGGACCTCTTTGCTTTCATTGACCACCATCCCTGCTTGGATGAGCCCCTGGCGAGTTTCATCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp CAGAGTCTAGAAAGCCCATTCTTCCTGCTCAGGTGTTaGTGGGCTATGGAGAGTGGCTTGCTGGGCTCAAAG +
Preference number: 6 (lower is better)
Translates to: QSLESPFFLLRC*WAMESGLLGSK
Trigger: CTTTGAGCCCAGCAAGCCACTCTCCATAGCCCACAAACACCTGAGCAGGAAGAATGGGCTTTCTAGACTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp GGGTCAGCATACTCAGGTGCAGCAGCGCAGTGCAGTTaGCTTGTGCAGATGTTTTGGGCAGCCAATGATGAA +
Preference number: 6 (lower is better)
Translates to: GSAYSGAAAQCS*LVQMFWAANDE
Trigger: TTCATCATTGGCTGCCCAAAACATCTGCACAAGCAAACTGCACTGCGCTGCTGCACCTGAGTATGCTGACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp GAAGGTGGTGCCGTCTCTGGCTCTCCCAACAGACCTTaGAATCTTGAGACTCTTTGGGATATGTTGGCCAGG +
Preference number: 6 (lower is better)
Translates to: EGGAVSGSPNRP*NLETLWDMLAR
Trigger: CCTGGCCAACATATCCCAAAGAGTCTCAAGATTCAAAGGTCTGTTGGGAGAGCCAGAGACGGCACCACCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp CAGAACAGGGTCGCAGAGCCCTGGAGCTCCACACGCTaGACTTCAAACTGTATACTCAGTTGTAAGCCATCC +
Preference number: 6 (lower is better)
Translates to: QNRVAEPWSSTR*TSNCILSCKPS
Trigger: GGATGGCTTACAACTGAGTATACAGTTTGAAGTCAAGCGTGTGGAGCTCCAGGGCTCTGCGACCCTGTTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 90 bp TCTCTCCACAGGCTCCAGAACCACTACACAGCACAAGCCACGATCTaGCTGCAATCTCTTTATCCACACAGAGACTGGAATCTTCTCCCC +
Preference number: 6 (lower is better)
Translates to: SLHRLQNHYTAQATI*LQSLYPHRDWNLLP
Trigger: GGGGAGAAGATTCCAGTCTCTGTGTGGATAAAGAGATTGCAGCAAGATCGTGGCTTGTGCTGTGTAGTGGTTCTGGAGCCTGTGGAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp AGTCTAGAAAGCCCATTCTTCCTGCTCAGGTGTTTGTaGGCTATGGAGAGTGGCTTGCTGGGCTCAAAGGTA +
Preference number: 6 (lower is better)
Translates to: SLESPFFLLRCL*AMESGLLGSKV
Trigger: TACCTTTGAGCCCAGCAAGCCACTCTCCATAGCCCACAAACACCTGAGCAGGAAGAATGGGCTTTCTAGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp TGGGATATGTTGGCCAGGAGGAGGGAGCTGCATGGATaGAATCAAGTCTATGACACACTGCCCAACTACATC +
Preference number: 6 (lower is better)
Translates to: WDMLARRRELHG*NQVYDTLPNYI
Trigger: GATGTAGTTGGGCAGTGTGTCATAGACTTGATTCCATCCATGCAGCTCCCTCCTCCTGGCCAACATATCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp CAGCATACTCAGGTGCAGCAGCGCAGTGCAGTTTGCTaGTGCAGATGTTTTGGGCAGCCAATGATGAAAGAC +
Preference number: 6 (lower is better)
Translates to: QHTQVQQRSAVC*CRCFGQPMMKD
Trigger: GTCTTTCATCATTGGCTGCCCAAAACATCTGCACAAGCAAACTGCACTGCGCTGCTGCACCTGAGTATGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp TGTGAACCCATGGAGATGAGCAAAGAGACTGTCGCATaGTGTGATAGTTCCATCACTCTGGAAGGCGACCCA +
Preference number: 6 (lower is better)
Translates to: CEPMEMSKETVA*CDSSITLEGDP
Trigger: TGGGTCGCCTTCCAGAGTGATGGAACTATCACATCATGCGACAGTCTCTTTGCTCATCTCCATGGGTTCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp ACTGGTAGGGATATTTCTGAGGTGTCTAGCTGGTTCTaGCCACCATGGGCTGGCAGGTTTCTCTTTGGAATG +
Preference number: 6 (lower is better)
Translates to: TGRDISEVSSWF*PPWAGRFLFGM
Trigger: CATTCCAAAGAGAAACCTGCCAGCCCATGGTGGTCAGAACCAGCTAGACACCTCAGAAATATCCCTACCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp CGCCTCGCTGAGTTCAGATGTGGTACAGGAACAATGTaGTGGAGTTCTGTCTGTCTGGTCCTTGAGAAAGAG +
Preference number: 6 (lower is better)
Translates to: RLAEFRCGTGTM*WSSVCLVLEKE
Trigger: CTCTTTCTCAAGGACCAGACAGACAGAACTCCATCACATTGTTCCTGTACCACATCTGAACTCAGCGAGGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp CATACTCAGGTGCAGCAGCGCAGTGCAGTTTGCTTGTaGAGATGTTTTGGGCAGCCAATGATGAAAGACAGT +
Preference number: 6 (lower is better)
Translates to: HTQVQQRSAVCL*RCFGQPMMKDS
Trigger: ACTGTCTTTCATCATTGGCTGCCCAAAACATCTGCACAAGCAAACTGCACTGCGCTGCTGCACCTGAGTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp GAGGATGTTCTTCAGGAACGAGTTCCACACGGGAGATaGCCAGATTTCCCTCACAGCTTGACTTGGATAACT +
Preference number: 6 (lower is better)
Translates to: EDVLQERVPHGR*PDFPHSLTWIT
Trigger: AGTTATCCAAGTCAAGCTGTGAGGGAAATCTGGGCATCTCCCGTGTGGAACTCGTTCCTGAAGAACATCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp AAGTTCTTGGGAAACCAGGAATGGGGGATGAATAACTaGCTCCATGGTCTCCTCCACCTCACAGAAGGGATT +
Preference number: 6 (lower is better)
Translates to: KFLGNQEWGMNN*LHGLLHLTEGI
Trigger: AATCCCTTCTGTGAGGTGGAGGAGACCATGGAGGCAGTTATTCATCCCCCATTCCTGGTTTCCCAAGAACTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp ATAGCTGCTCCTCGTGGATGGGCAGGCTTCCTTTTGTaGGGTTTTGTTGCACCTTGGATAACCATTTCCTGT +
Preference number: 6 (lower is better)
Translates to: IAAPRGWAGFLL*GFVAPWITISC
Trigger: ACAGGAAATGGTTATCCAAGGTGCAACAAAACCCCACAAAAGGAAGCCTGCCCATCCACGAGGAGCAGCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp ACAATAGCTGCTCCTCGTGGATGGGCAGGCTTCCTTTaGTGGGGTTTTGTTGCACCTTGGATAACCATTTCC +
Preference number: 6 (lower is better)
Translates to: TIAAPRGWAGFL*WGFVAPWITIS
Trigger: GGAAATGGTTATCCAAGGTGCAACAAAACCCCACAAAAGGAAGCCTGCCCATCCACGAGGAGCAGCTATTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp GAAGGAAGTATCTTGTATCCAGTTTCCAATCGTGTCTaGGTCCTAGAGGAGACTTGTCCTCCCACCAGCTTC +
Preference number: 6 (lower is better)
Translates to: EGSILYPVSNRV*VLEETCPPTSF
Trigger: GAAGCTGGTGGGAGGACAAGTCTCCTCTAGGACTCAGACACGATTGGAAACTGGATACAAGATACTTCCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp CAAAGAAATGTTAGACAGTTCTGCTCGATCATGTCCTaGTCCCATCTCCTGGAACCGTTGGCCTTCACTAAG +
Preference number: 6 (lower is better)
Translates to: QRNVRQFCSIMS*SHLLEPLAFTK
Trigger: CTTAGTGAAGGCCAACGGTTCCAGGAGATGGGAGCAGGACATGATCGAGCAGAACTGTCTAACATTTCTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp GTGTTCAGAGGATACCAAAGAAATGTTAGACAGTTCTaGTCGATCATGTCCTGCTCCCATCTCCTGGAACCG +
Preference number: 6 (lower is better)
Translates to: VFRGYQRNVRQF*SIMSCSHLLEP
Trigger: CGGTTCCAGGAGATGGGAGCAGGACATGATCGAGCAGAACTGTCTAACATTTCTTTGGTATCCTCTGAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp TGGTCAATGAAAGCAAAGAGGTCCATGCCAGAGCCGTaGTTTTCCATCACCAGCTGGAAGAACTCTTGGTTT +
Preference number: 6 (lower is better)
Translates to: WSMKAKRSMPEP*FSITSWKNSWF
Trigger: AAACCAAGAGTTCTTCCAGCTGGTGATGGAAAAGCACGGCTCTGGCATGGACCTCTTTGCTTTCATTGACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp GTGGTACAGGAACAATGTGATGGAGTTCTGTCTGTCTaGTCCTTGAGAAAGAGCTCCTTGAGGTTCCAGGAA +
Preference number: 6 (lower is better)
Translates to: VVQEQCDGVLSV*SLRKSSLRFQE
Trigger: TTCCTGGAACCTCAAGGAGCTCTTTCTCAAGGACCAGACAGACAGAACTCCATCACATTGTTCCTGTACCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp AGGTCCATGCCAGAGCCGTGCTTTTCCATCACCAGCTaGAAGAACTCTTGGTTTTCGAATATATCCAGAACC +
Preference number: 6 (lower is better)
Translates to: RSMPEPCFSITS*KNSWFSNISRT
Trigger: GGTTCTGGATATATTCGAAAACCAAGAGTTCTTCCAGCTGGTGATGGAAAAGCACGGCTCTGGCATGGACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 90 bp GTCCATGCCAGAGCCGTGCTTTTCCATCACCAGCTGGAAGAACTCTaGGTTTTCGAATATATCCAGAACCTTGATTATGTTGGCATGGTC +
Preference number: 6 (lower is better)
Translates to: VHARAVLFHHQLEEL*VFEYIQNLDYVGMV
Trigger: GACCATGCCAACATAATCAAGGTTCTGGATATATTCGAAAACCAAGAGTTCTTCCAGCTGGTGATGGAAAAGCACGGCTCTGGCATGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp TCATCCTTGATGTCTCTATGGATGATGCCTTGGGAGTaGAGGTATCCTACAGCAGACACTAGTTGTCGAAAG +
Preference number: 6 (lower is better)
Translates to: SSLMSLWMMPWE*RYPTADTSCRK
Trigger: CTTTCGACAACTAGTGTCTGCTGTAGGATACCTGCACTCCCAAGGCATCATCCATAGAGACATCAAGGATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp AACAGACCTTTGAATCTTGAGACTCTTTGGGATATGTaGGCCAGGAGGAGGGAGCTGCATGGATGGAATCAA +
Preference number: 6 (lower is better)
Translates to: NRPLNLETLWDM*ARRRELHGWNQ
Trigger: TTGATTCCATCCATGCAGCTCCCTCCTCCTGGCCAACATATCCCAAAGAGTCTCAAGATTCAAAGGTCTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp CCAACTACATCCTTTGGAGATGTGAACCCATGGAGATaGGCAAAGAGACTGTCGCATGATGTGATAGTTCCA +
Preference number: 6 (lower is better)
Translates to: PTTSFGDVNPWR*AKRLSHDVIVP
Trigger: TGGAACTATCACATCATGCGACAGTCTCTTTGCTCATCTCCATGGGTTCACATCTCCAAAGGATGTAGTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp CTTGACTTGGATAACTGTTCCTTAATCAAGCAAGTCTaGAGCTCTTCTCTGTCATTTCTCACTCCTGGCCAT +
Preference number: 6 (lower is better)
Translates to: LDLDNCSLIKQV*SSSLSFLTPGH
Trigger: ATGGCCAGGAGTGAGAAATGACAGAGAAGAGCTGCAGACTTGCTTGATTAAGGAACAGTTATCCAAGTCAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS GCA 72 bp ATGAAGCAAACAGTTTTGCATCCACTGGTTTGGACTTaGTTTCTTCTAAAAGACTCTCCCTGTAGCTCTCTG +
Preference number: 6 (lower is better)
Translates to: MKQTVLHPLVWT*FLLKDSPCSSL
Trigger: CAGAGAGCTACAGGGAGAGTCTTTTAGAAGAAAGCAAGTCCAAACCAGTGGATGCAAAACTGTTTGCTTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp CTTCACATGAAGCAAACAGTTTTGCATCCACTGGTTTaGACTTGCTTTCTTCTAAAAGACTCTCCCTGTAGC +
Preference number: 6 (lower is better)
Translates to: LHMKQTVLHPLV*TCFLLKDSPCS
Trigger: GCTACAGGGAGAGTCTTTTAGAAGAAAGCAAGTCCAAACCAGTGGATGCAAAACTGTTTGCTTCATGTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp GAGCCGTGCTTTTCCATCACCAGCTGGAAGAACTCTTaGTTTTCGAATATATCCAGAACCTTGATTATGTTG +
Preference number: 6 (lower is better)
Translates to: EPCFSITSWKNS*FSNISRTLIML
Trigger: CAACATAATCAAGGTTCTGGATATATTCGAAAACCAAGAGTTCTTCCAGCTGGTGATGGAAAAGCACGGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 90 bp ATCACCAGCTGGAAGAACTCTTGGTTTTCGAATATATCCAGAACCTaGATTATGTTGGCATGGTCCACCTTGGACAGAATTGCAATCTCT +
Preference number: 6 (lower is better)
Translates to: ITSWKNSWFSNISRT*IMLAWSTLDRIAIS
Trigger: AGAGATTGCAATTCTGTCCAAGGTGGACCATGCCAACATAATCAAGGTTCTGGATATATTCGAAAACCAAGAGTTCTTCCAGCTGGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS TCA 72 bp GGAAGAACTCTTGGTTTTCGAATATATCCAGAACCTTaGTTATGTTGGCATGGTCCACCTTGGACAGAATTG +
Preference number: 6 (lower is better)
Translates to: GRTLGFRIYPEP*LCWHGPPWTEL
Trigger: CAATTCTGTCCAAGGTGGACCATGCCAACATAATCAAGGTTCTGGATATATTCGAAAACCAAGAGTTCTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp AGAGCCGTGCTTTTCCATCACCAGCTGGAAGAACTCTaGGTTTTCGAATATATCCAGAACCTTGATTATGTT +
Preference number: 6 (lower is better)
Translates to: RAVLFHHQLEEL*VFEYIQNLDYV
Trigger: AACATAATCAAGGTTCTGGATATATTCGAAAACCAAGAGTTCTTCCAGCTGGTGATGGAAAAGCACGGCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 90 bp TCCACCTTGGACAGAATTGCAATCTCTAAAGTAACTCTTCCAAGTTaGGGATCCTCAATCCAGCAATCCTCTAAAACCTTCTCCTTCTTA +
Preference number: 6 (lower is better)
Translates to: STLDRIAISKVTLPS*GSSIQQSSKTFSFL
Trigger: TAAGAAGGAGAAGGTTTTAGAGGATTGCTGGATTGAGGATCCCAAACTTGGAAGAGTTACTTTAGAGATTGCAATTCTGTCCAAGGTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 72 bp ATATCCAGAACCTTGATTATGTTGGCATGGTCCACCTaGGACAGAATTGCAATCTCTAAAGTAACTCTTCCA +
Preference number: 6 (lower is better)
Translates to: ISRTLIMLAWST*DRIAISKVTLP
Trigger: TGGAAGAGTTACTTTAGAGATTGCAATTCTGTCCAAGGTGGACCATGCCAACATAATCAAGGTTCTGGATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 90 bp TTTTCGAATATATCCAGAACCTTGATTATGTTGGCATGGTCCACCTaGGACAGAATTGCAATCTCTAAAGTAACTCTTCCAAGTTTGGGA +
Preference number: 6 (lower is better)
Translates to: FSNISRTLIMLAWST*DRIAISKVTLPSLG
Trigger: TCCCAAACTTGGAAGAGTTACTTTAGAGATTGCAATTCTGTCCAAGGTGGACCATGCCAACATAATCAAGGTTCTGGATATATTCGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CAA 90 bp TGGAAGAACTCTTGGTTTTCGAATATATCCAGAACCTTGATTATGTaGGCATGGTCCACCTTGGACAGAATTGCAATCTCTAAAGTAACT +
Preference number: 6 (lower is better)
Translates to: WKNSWFSNISRTLIM*AWSTLDRIAISKVT
Trigger: AGTTACTTTAGAGATTGCAATTCTGTCCAAGGTGGACCATGCCAACATAATCAAGGTTCTGGATATATTCGAAAACCAAGAGTTCTTCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4
CDS CCA 72 bp TTTTCGAATATATCCAGAACCTTGATTATGTTGGCATaGTCCACCTTGGACAGAATTGCAATCTCTAAAGTA +
Preference number: 6 (lower is better)
Translates to: FSNISRTLIMLA*STLDRIAISKV
Trigger: TACTTTAGAGATTGCAATTCTGTCCAAGGTGGACCATGCCAACATAATCAAGGTTCTGGATATATTCGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027493.4