RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PARVG (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022439

Ensembl transcript IDs: ENSMUST00000023074.9, ENSMUST00000125928.8, ENSMUST00000145809.2, ENSMUST00000163667.2

Found 180 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAACCCAAGAACCAACTCCAGGTTCTCTTCCCAGGGGCTCAGGGCTaGGCTCAGGACAGCAGCTGTAGGGATAGCCTGGCCAGGGTCTTT +
Preference number: 1 (lower is better)
Translates to: EPKNQLQVLFPGAQG*AQDSSCRDSLARVF
Trigger: AAAGACCCTGGCCAGGCTATCCCTACAGCTGCTGTCCTGAGCTCAGCCCTGAGCCCCTGGGAAGAGAACCTGGAGTTGGTTCTTGGGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR TCA 90 bp ACATGTCACCAAGCCACAGTAACAAGGCTGGCATGGGAAGAGCTCTaGCTGCTGGGTCCTTCAGAGGTGGCAGCTCCCGAGAAACAGCTG +
Preference number: 1 (lower is better)
Translates to: TCHQATVTRLAWEEL*LLGPSEVAAPEKQL
Trigger: CAGCTGTTTCTCGGGAGCTGCCACCTCTGAAGGACCCAGCAGTCAGAGCTCTTCCCATGCCAGCCTTGTTACTGTGGCTTGGTGACATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR CCA 90 bp AGAGACCATGGCCTGAGACCATCAGCCTTAACCCCAAAGAGCCTCTaGCTAGGGATGGTCAGCTTTGTGGAGTCTGAGCAGCCACTATCT +
Preference number: 1 (lower is better)
Translates to: RDHGLRPSALTPKSL*LGMVSFVESEQPLS
Trigger: AGATAGTGGCTGCTCAGACTCCACAAAGCTGACCATCCCTAGCCAGAGGCTCTTTGGGGTTAAGGCTGATGGTCTCAGGCCATGGTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR-3UTR GCA 90 bp ATCAGACACCAGAGCCCCAGAACACGTAGCTCCACCGACTGTGGTTGTAGGGGTAGGACTTCACAGGCATaGAGGGCCCCTCATCCACTT +
Preference number: 2 (lower is better)
Translates to: IRHQSPRTRSSTDCGCRGRTSQA*RAPHPL
Trigger: AAGTGGATGAGGGGCCCTGCATGCCTGTGAAGTCCT...ACCCCTACAACCACAGTCGGTGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR-3UTR GCA 90 bp CTAAAAGACGTTCCTCGCAGGGACCTAGAGCTGGGCAAGCAGGGCAAAGTCCAGAGGACTTCACAGGCATaGAGGGCCCCTCATCCACTT +
Preference number: 2 (lower is better)
Translates to: LKDVPRRDLELGKQGKVQRTSQA*RAPHPL
Trigger: AAGTGGATGAGGGGCCCTGCATGCCTGTGAAGTCCT...CTGGACTTTGCCCTGCTTGCCCAGCTCTAGGTCCCTGCGAGGAACGTCTTTTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR-3UTR CCA 90 bp TGCCCTGGCCAGACTCTGCTCCAAAATTCCCCAAAGGCAAAGCTGTTCGGCTATCACCCCAGTGAGGGGTaGAAGGTAGATGGCCAGGAA +
Preference number: 2 (lower is better)
Translates to: CPGQTLLQNSPKAKLFGYHPSEG*KVDGQE
Trigger: TTCCTGGCCATCTACCTTCCACCCCTCACTGGGGTG...ATAGCCGAACAGCTTTGCCTTTGGGGAATTTTGGAGCAGAGTCTGGCCAGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR-3UTR TCA 90 bp ATCAGACACCAGAGCCCCAGAACACGTAGCTCCACCGACTGTGGTTGTAGGGGTCAGCTTTGTGGAGTCTaGGCAGCCACTATCTACCAA +
Preference number: 2 (lower is better)
Translates to: IRHQSPRTRSSTDCGCRGQLCGV*AATIYQ
Trigger: TTGGTAGATAGTGGCTGCTCAGACTCCACAAAGCTG...ACCCCTACAACCACAGTCGGTGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR-3UTR TCA 90 bp ACATCAGACACCAGAGCCCCAGAACACGTAGCTCCACCGACTGTGGTTGTAGGGCTGGCCAGGGTCTTTTaGACTCTTTTCTCCCACATG +
Preference number: 2 (lower is better)
Translates to: TSDTRAPEHVAPPTVVVGLARVF*TLFSHM
Trigger: CATGTGGGAGAAAAGAGTTCAAAAGACCCTGGCCAG...CCCTACAACCACAGTCGGTGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR-3UTR GCA 90 bp CTAAAAGACGTTCCTCGCAGGGACCTAGAGCTGGGCAAGCAGGGCAAAGTCCAGCTGAACCCCATGACTTaGATCTCCTCCCACAACTTC +
Preference number: 2 (lower is better)
Translates to: LKDVPRRDLELGKQGKVQLNPMT*ISSHNF
Trigger: GAAGTTGTGGGAGGAGATGCAAGTCATGGGGTTCAG...CTGGACTTTGCCCTGCTTGCCCAGCTCTAGGTCCCTGCGAGGAACGTCTTTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR-3UTR CCA 90 bp AAAGCCCCAGACCTCCTCACATCAGACACCAGAGCCCCAGAACACGTAGCTCCAGGATGGTCAGCTTTGTaGAGTCTGAGCAGCCACTAT +
Preference number: 2 (lower is better)
Translates to: KAPDLLTSDTRAPEHVAPGWSAL*SLSSHY
Trigger: ATAGTGGCTGCTCAGACTCCACAAAGCTGACCATCC...TGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGATGTGAGGAGGTCTGGGGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR-3UTR CCA 90 bp CTAAAAGACGTTCCTCGCAGGGACCTAGAGCTGGGCAAGCAGGGCAAAGTCCAGACTTCTCCTCCTCCATaGACCCAGCTCAGTTATTCA +
Preference number: 2 (lower is better)
Translates to: LKDVPRRDLELGKQGKVQTSPPP*TQLSYS
Trigger: TGAATAACTGAGCTGGGTCCATGGAGGAGGAGAAGT...CTGGACTTTGCCCTGCTTGCCCAGCTCTAGGTCCCTGCGAGGAACGTCTTTTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR-3UTR TCA 90 bp TTAAACGCAATTCATACACTGTCAAAATGCACGGAGCAAAGCAGGGGTGGGCACGCATGGGAAGAGCTCTaGCTGCTGGGTCCTTCAGAG +
Preference number: 2 (lower is better)
Translates to: LNAIHTLSKCTEQSRGGHAWEEL*LLGPSE
Trigger: CTCTGAAGGACCCAGCAGTCAGAGCTCTTCCCATGC...GTGCCCACCCCTGCTTTGCTCCGTGCATTTTGACAGTGTATGAATTGCGTTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR-3UTR GCA 90 bp TGCCCTGGCCAGACTCTGCTCCAAAATTCCCCAAAGGCAAAGCTGTTCGGCTATCTGAACCCCATGACTTaGATCTCCTCCCACAACTTC +
Preference number: 2 (lower is better)
Translates to: CPGQTLLQNSPKAKLFGYLNPMT*ISSHNF
Trigger: GAAGTTGTGGGAGGAGATGCAAGTCATGGGGTTCAG...ATAGCCGAACAGCTTTGCCTTTGGGGAATTTTGGAGCAGAGTCTGGCCAGGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR-3UTR CCA 90 bp GTCTCTATGAAAGGATTACCTAAGCAGAAAGAGATAGCCGGACCCCAGCTACAACTCTTTTCTCCCACATaGGGCTCTGGTCTTTGGGTG +
Preference number: 2 (lower is better)
Translates to: VSMKGLPKQKEIAGPQLQLFSPT*GSGLWV
Trigger: CACCCAAAGACCAGAGCCCCATGTGGGAGAAAAGAG...TTGTAGCTGGGGTCCGGCTATCTCTTTCTGCTTAGGTAATCCTTTCATAGAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR CCA 72 bp CATGGGAAGAGCTCTGACTGCTGGGTCCTTCAGAGGTaGCAGCTCCCGAGAAACAGCTGGAGGAGGTGGAGG +
Preference number: 3 (lower is better)
Translates to: HGKSSDCWVLQR*QLPRNSWRRWR
Trigger: CCTCCACCTCCTCCAGCTGTTTCTCGGGAGCTGCCACCTCTGAAGGACCCAGCAGTCAGAGCTCTTCCCATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR CCA 72 bp GGCCTGAGACCATCAGCCTTAACCCCAAAGAGCCTCTaGCTAGGGATGGTCAGCTTTGTGGAGTCTGAGCAG +
Preference number: 3 (lower is better)
Translates to: GLRPSALTPKSL*LGMVSFVESEQ
Trigger: CTGCTCAGACTCCACAAAGCTGACCATCCCTAGCCAGAGGCTCTTTGGGGTTAAGGCTGATGGTCTCAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR CCA 72 bp GCCTGCCTAGGGCCAAAGGGACAAGTGGAATGGAGCTaGGTAGAGAAAAGCCCCAGACCTCCTCACATCAGA +
Preference number: 3 (lower is better)
Translates to: ACLGPKGQVEWS*VEKSPRPPHIR
Trigger: TCTGATGTGAGGAGGTCTGGGGCTTTTCTCTACCCAGCTCCATTCCACTTGTCCCTTTGGCCCTAGGCAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR-3UTR CAA 90 bp ACATCAGACACCAGAGCCCCAGAACACGTAGCTCCACCGACTGTGGTTGTAGGGCCTGAACCCCATGACTaGCATCTCCTCCCACAACTT +
Preference number: 3 (lower is better)
Translates to: TSDTRAPEHVAPPTVVVGPEPHD*HLLPQL
Trigger: AAGTTGTGGGAGGAGATGCAAGTCATGGGGTTCAGG...CCCTACAACCACAGTCGGTGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR-3UTR CAA 90 bp CCTAGGGCCAAAGGGACAAGTGGAATGGAGCTGGGTAGAGAAAAGCCCCAGACCCCTGAACCCCATGACTaGCATCTCCTCCCACAACTT +
Preference number: 3 (lower is better)
Translates to: PRAKGTSGMELGREKPQTPEPHD*HLLPQL
Trigger: AAGTTGTGGGAGGAGATGCAAGTCATGGGGTTCAGG...GGTCTGGGGCTTTTCTCTACCCAGCTCCATTCCACTTGTCCCTTTGGCCCTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR CCA 72 bp AGGGCTGAGCTCAGGACAGCAGCTGTAGGGATAGCCTaGCCAGGGTCTTTTGAACTCTTTTCTCCCACATGG +
Preference number: 3 (lower is better)
Translates to: RAELRTAAVGIA*PGSFELFSPTW
Trigger: CCATGTGGGAGAAAAGAGTTCAAAAGACCCTGGCCAGGCTATCCCTACAGCTGCTGTCCTGAGCTCAGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR-3UTR CAA 90 bp ATCTCCTCCCACAACTTCTCCTCCTCCATGGACCCAGCTCAGTTATTCAGCTGTATGGGGCTCTGGTCTTaGGGTGATAGTCCTGGCCTC +
Preference number: 3 (lower is better)
Translates to: ISSHNFSSSMDPAQLFSCMGLWS*GDSPGL
Trigger: GAGGCCAGGACTATCACCCAAAGACCAGAGCCCCAT...ACAGCTGAATAACTGAGCTGGGTCCATGGAGGAGGAGAAGTTGTGGGAGGAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR TCA 72 bp AAGTCTCACGGGACAGAATGCAGACCAGGGTTAACCTaGACCCAAGAACCAACTCCAGGTTCTCTTCCCAGG +
Preference number: 3 (lower is better)
Translates to: KSHGTECRPGLT*TQEPTPGSLPR
Trigger: CCTGGGAAGAGAACCTGGAGTTGGTTCTTGGGTTCAGGTTAACCCTGGTCTGCATTCTGTCCCGTGAGACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR-3UTR CAA 90 bp TGCCCTGGCCAGACTCTGCTCCAAAATTCCCCAAAGGCAAAGCTGTTCGGCTATCCTGGCCAGGGTCTTTaGAACTCTTTTCTCCCACAT +
Preference number: 3 (lower is better)
Translates to: CPGQTLLQNSPKAKLFGYPGQGL*NSFLPH
Trigger: ATGTGGGAGAAAAGAGTTCAAAAGACCCTGGCCAGG...ATAGCCGAACAGCTTTGCCTTTGGGGAATTTTGGAGCAGAGTCTGGCCAGGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
3UTR TCA 72 bp GAGCCTCTGGCTAGGGATGGTCAGCTTTGTGGAGTCTaGGCAGCCACTATCTACCAAGGTATAGCCTTAGTA +
Preference number: 3 (lower is better)
Translates to: EPLARDGQLCGV*AATIYQGIALV
Trigger: TACTAAGGCTATACCTTGGTAGATAGTGGCTGCTCAGACTCCACAAAGCTGACCATCCCTAGCCAGAGGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp CTAAAAGACGTTCCTCGCAGGGACCTAGAGCTGGGCAAGCAGGGCAAAGTCCAGAGGGGCAGGTCCGGCTaGAAGCGTTTGGCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: LKDVPRRDLELGKQGKVQRGRSG*KRLARA
Trigger: GGCCCTGGCCAAACGCTTCCAGCCGGACCTGCCCCT...CTGGACTTTGCCCTGCTTGCCCAGCTCTAGGTCCCTGCGAGGAACGTCTTTTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp CATGGGAAGAGCTCTGACTGCTGGGTCCTTCAGAGGTGGCAGCTCCCGAGAAACAGGGCCACCAGGAGATaGAAGGTGGCCAGCAGGTCC +
Preference number: 4 (lower is better)
Translates to: HGKSSDCWVLQRWQLPRNRATRR*KVASRS
Trigger: GGACCTGCTGGCCACCTTGCATCTCCTGGTGGCCCT...GTTTCTCGGGAGCTGCCACCTCTGAAGGACCCAGCAGTCAGAGCTCTTCCCATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR TCA 90 bp ACATCAGACACCAGAGCCCCAGAACACGTAGCTCCACCGACTGTGGTTGTAGGGTGGGGTGGACCAGGCTaGAGGCCAAAGCCACCCAGA +
Preference number: 4 (lower is better)
Translates to: TSDTRAPEHVAPPTVVVGWGGPG*RPKPPR
Trigger: TCTGGGTGGCTTTGGCCTTCAGCCTGGTCCACCCCA...CCCTACAACCACAGTCGGTGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGATGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp AGAGACCATGGCCTGAGACCATCAGCCTTAACCCCAAAGAGCCTCTGGCTAGGGCTGCGGACCACGATGTaGTCCGGGAGGAGTGTGGTG +
Preference number: 4 (lower is better)
Translates to: RDHGLRPSALTPKSLWLGLRTTM*SGRSVV
Trigger: CACCACACTCCTCCCGGAGCACATCGTGGTCCGCAG...CCCTAGCCAGAGGCTCTTTGGGGTTAAGGCTGATGGTCTCAGGCCATGGTCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp AAAGCCCCAGACCTCCTCACATCAGACACCAGAGCCCCAGAACACGTAGCTCCAATGACCCCCAGCTTGTaGCTCTGGCTGGCCGAGGTC +
Preference number: 4 (lower is better)
Translates to: KAPDLLTSDTRAPEHVAPMTPSL*LWLAEV
Trigger: GACCTCGGCCAGCCAGAGGCACAAGCTGGGGGTCAT...TGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGATGTGAGGAGGTCTGGGGCTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp GGAATGGAGCTGGGTAGAGAAAAGCCCCAGACCTCCTCACATCAGACACCAGAGTGGGGTAGCATGGTGTaGCCCTCCACCCTCCGCCCT +
Preference number: 4 (lower is better)
Translates to: GMELGREKPQTSSHQTPEWGSMV*PSTLRP
Trigger: AGGGCGGAGGGTGGAGGGGCACACCATGCTACCCCA...CTCTGGTGTCTGATGTGAGGAGGTCTGGGGCTTTTCTCTACCCAGCTCCATTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp ATCAGACACCAGAGCCCCAGAACACGTAGCTCCACCGACTGTGGTTGTAGGGGTCCGGCTGGAAGCGTTTaGCCAGGGCCACCAGGAGAT +
Preference number: 4 (lower is better)
Translates to: IRHQSPRTRSSTDCGCRGPAGSV*PGPPGD
Trigger: ATCTCCTGGTGGCCCTGGCCAAACGCTTCCAGCCGG...ACCCCTACAACCACAGTCGGTGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp AAGAGCCTCTGGCTAGGGATGGTCAGCTTTGTGGAGTCTGAGCAGCCACTATCTAGGGGCAGGTCCGGCTaGAAGCGTTTGGCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: KSLWLGMVSFVESEQPLSRGRSG*KRLARA
Trigger: GGCCCTGGCCAAACGCTTCCAGCCGGACCTGCCCCT...AGATAGTGGCTGCTCAGACTCCACAAAGCTGACCATCCCTAGCCAGAGGCTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR TCA 90 bp AAAGCCCCAGACCTCCTCACATCAGACACCAGAGCCCCAGAACACGTAGCTCCATCTTCCTCCGTGGGCTaGGCTACCTCCTTTGGGAGC +
Preference number: 4 (lower is better)
Translates to: KAPDLLTSDTRAPEHVAPSSSVG*ATSFGS
Trigger: GCTCCCAAAGGAGGTAGCTCAGCCCACGGAGGAAGA...TGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGATGTGAGGAGGTCTGGGGCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp TGCCCTGGCCAGACTCTGCTCCAAAATTCCCCAAAGGCAAAGCTGTTCGGCTATTGGGGTAGCATGGTGTaGCCCTCCACCCTCCGCCCT +
Preference number: 4 (lower is better)
Translates to: CPGQTLLQNSPKAKLFGYWGSMV*PSTLRP
Trigger: AGGGCGGAGGGTGGAGGGGCACACCATGCTACCCCA...ATAGCCGAACAGCTTTGCCTTTGGGGAATTTTGGAGCAGAGTCTGGCCAGGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp AAGAGCCTCTGGCTAGGGATGGTCAGCTTTGTGGAGTCTGAGCAGCCACTATCTCTGCGGACCACGATGTaGTCCGGGAGGAGTGTGGTG +
Preference number: 4 (lower is better)
Translates to: KSLWLGMVSFVESEQPLSLRTTM*SGRSVV
Trigger: CACCACACTCCTCCCGGAGCACATCGTGGTCCGCAG...AGATAGTGGCTGCTCAGACTCCACAAAGCTGACCATCCCTAGCCAGAGGCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp CTCTGGCTAGGGATGGTCAGCTTTGTGGAGTCTGAGCAGCCACTATCTACCAAGATGACCCCCAGCTTGTaGCTCTGGCTGGCCGAGGTC +
Preference number: 4 (lower is better)
Translates to: LWLGMVSFVESEQPLSTKMTPSL*LWLAEV
Trigger: GACCTCGGCCAGCCAGAGGCACAAGCTGGGGGTCAT...CTTGGTAGATAGTGGCTGCTCAGACTCCACAAAGCTGACCATCCCTAGCCAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp ATGGGAAGAGCTCTGACTGCTGGGTCCTTCAGAGGTGGCAGCTCCCGAGAAACATCCTTGCCTTCCCAGTaGGGTGAAGTGGCCGTCCAT +
Preference number: 4 (lower is better)
Translates to: MGRALTAGSFRGGSSRETSLPSQ*GEVAVH
Trigger: ATGGACGGCCACTTCACCCCACTGGGAAGGCAAGGA...TGTTTCTCGGGAGCTGCCACCTCTGAAGGACCCAGCAGTCAGAGCTCTTCCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163667.2
CDS-3UTR TCA 90 bp GGAATGGAGCTGGGTAGAGAAAAGCCCCAGACCTCCTCACATCAGACACCAGAGTCAGCAGGAGCAGGATaGCGCCATCTGCAAACTGGG +
Preference number: 4 (lower is better)
Translates to: GMELGREKPQTSSHQTPESAGAG*RHLQTG
Trigger: CCCAGTTTGCAGATGGCGTCATCCTGCTCCTGCTGA...CTCTGGTGTCTGATGTGAGGAGGTCTGGGGCTTTTCTCTACCCAGCTCCATTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp AGAGACCATGGCCTGAGACCATCAGCCTTAACCCCAAAGAGCCTCTGGCTAGGGACGCTCCACTTGGCCTaGTTCTCTTCCACCTGTAGG +
Preference number: 4 (lower is better)
Translates to: RDHGLRPSALTPKSLWLGTLHLA*FSSTCR
Trigger: CCTACAGGTGGAAGAGAAGCAGGCCAAGTGGAGCGT...CCCTAGCCAGAGGCTCTTTGGGGTTAAGGCTGATGGTCTCAGGCCATGGTCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp ATCTCCTCCCACAACTTCTCCTCCTCCATGGACCCAGCTCAGTTATTCAGCTGTAGGGCCACCAGGAGATaGAAGGTGGCCAGCAGGTCC +
Preference number: 4 (lower is better)
Translates to: ISSHNFSSSMDPAQLFSCRATRR*KVASRS
Trigger: GGACCTGCTGGCCACCTTGCATCTCCTGGTGGCCCT...ACAGCTGAATAACTGAGCTGGGTCCATGGAGGAGGAGAAGTTGTGGGAGGAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp ATCTCCTCCCACAACTTCTCCTCCTCCATGGACCCAGCTCAGTTATTCAGCTGTGCCTCTTGGACGGCGTaGACTTTCTCCGGAGCCAGC +
Preference number: 4 (lower is better)
Translates to: ISSHNFSSSMDPAQLFSCASWTA*TFSGAS
Trigger: GCTGGCTCCGGAGAAAGTGCACGCCGTCCAAGAGGC...ACAGCTGAATAACTGAGCTGGGTCCATGGAGGAGGAGAAGTTGTGGGAGGAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp ATCAGACACCAGAGCCCCAGAACACGTAGCTCCACCGACTGTGGTTGTAGGGGTGAAGCTCTTCCTCCGTaGGCTGAGCTACCTCCTTTG +
Preference number: 4 (lower is better)
Translates to: IRHQSPRTRSSTDCGCRGEALPP*AELPPL
Trigger: CAAAGGAGGTAGCTCAGCCCACGGAGGAAGAGCTTC...ACCCCTACAACCACAGTCGGTGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp ACATCAGACACCAGAGCCCCAGAACACGTAGCTCCACCGACTGTGGTTGTAGGGTCTCCACGCTCCACTTaGCCTGCTTCTCTTCCACCT +
Preference number: 4 (lower is better)
Translates to: TSDTRAPEHVAPPTVVVGSPRST*PASLPP
Trigger: AGGTGGAAGAGAAGCAGGCCAAGTGGAGCGTGGAGA...CCCTACAACCACAGTCGGTGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp AACCCAGGACTTCACAGGCATGCAGGGCCCCTCATCCACTTAAACGCAATTCATTGTCTTCCTCCAGGCTaGGGACCACGATGTGCTCCG +
Preference number: 4 (lower is better)
Translates to: NPGLHRHAGPLIHLNAIHCLPPG*GPRCAP
Trigger: CGGAGCACATCGTGGTCCGCAGCCTGGAGGAAGACA...ATGAATTGCGTTTAAGTGGATGAGGGGCCCTGCATGCCTGTGAAGTCCTGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp CATGGGAAGAGCTCTGACTGCTGGGTCCTTCAGAGGTGGCAGCTCCCGAGAAACGCTAGGGTGACATTGTaGAGCATTTCTGTGGGAGAG +
Preference number: 4 (lower is better)
Translates to: HGKSSDCWVLQRWQLPRNARVTL*SISVGE
Trigger: CTCTCCCACAGAAATGCTGCACAATGTCACCCTAGC...GTTTCTCGGGAGCTGCCACCTCTGAAGGACCCAGCAGTCAGAGCTCTTCCCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp GGAATGGAGCTGGGTAGAGAAAAGCCCCAGACCTCCTCACATCAGACACCAGAGCTTCTTTCCTCCTCGTaGAAGCTCTTCCTCCGTGGG +
Preference number: 4 (lower is better)
Translates to: GMELGREKPQTSSHQTPELLSSS*KLFLRG
Trigger: CCCACGGAGGAAGAGCTTCCACGAGGAGGAAAGAAG...CTCTGGTGTCTGATGTGAGGAGGTCTGGGGCTTTTCTCTACCCAGCTCCATTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp CATGCAGGGCCCCTCATCCACTTAAACGCAATTCATACACTGTCAAAATGCACGCACCTGGACGTTGTCTaGGAGGGGCAGGTCCGGCTG +
Preference number: 4 (lower is better)
Translates to: HAGPLIHLNAIHTLSKCTHLDVV*EGQVRL
Trigger: CAGCCGGACCTGCCCCTCCCAGACAACGTCCAGGTG...CGTGCATTTTGACAGTGTATGAATTGCGTTTAAGTGGATGAGGGGCCCTGCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR TCA 90 bp TTTTCTCCCACATGGGGCTCTGGTCTTTGGGTGATAGTCCTGGCCTCATCACCCGGAGGAGTGTGGTGTTaGTCCATTCCATCAGCACCT +
Preference number: 4 (lower is better)
Translates to: FSPTWGSGLWVIVLASSPGGVWC*SIPSAP
Trigger: AGGTGCTGATGGAATGGATCAACACCACACTCCTCC...GGGTGATGAGGCCAGGACTATCACCCAAAGACCAGAGCCCCATGTGGGAGAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR TCA 90 bp GTATATAGAGACCATGGCCTGAGACCATCAGCCTTAACCCCAAAGAGCCTCTGGTCAGCAGGAGCAGGATaGCGCCATCTGCAAACTGGG +
Preference number: 4 (lower is better)
Translates to: VYRDHGLRPSALTPKSLWSAGAG*RHLQTG
Trigger: CCCAGTTTGCAGATGGCGTCATCCTGCTCCTGCTGA...CCAGAGGCTCTTTGGGGTTAAGGCTGATGGTCTCAGGCCATGGTCTCTATATAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp AGAGACCATGGCCTGAGACCATCAGCCTTAACCCCAAAGAGCCTCTGGCTAGGGTTCCAGCTTGAGCGATaGCAACTTCTGGAACAGGTG +
Preference number: 4 (lower is better)
Translates to: RDHGLRPSALTPKSLWLGFQLER*QLLEQV
Trigger: CACCTGTTCCAGAAGTTGGCATCGCTCAAGCTGGAA...CCCTAGCCAGAGGCTCTTTGGGGTTAAGGCTGATGGTCTCAGGCCATGGTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp ACATCAGACACCAGAGCCCCAGAACACGTAGCTCCACCGACTGTGGTTGTAGGGTTCCAGCTTGAGCGATaGCAACTTCTGGAACAGGTG +
Preference number: 4 (lower is better)
Translates to: TSDTRAPEHVAPPTVVVGFQLER*QLLEQV
Trigger: CACCTGTTCCAGAAGTTGGCATCGCTCAAGCTGGAA...CCCTACAACCACAGTCGGTGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp TTTTCTCCCACATGGGGCTCTGGTCTTTGGGTGATAGTCCTGGCCTCATCACCCCTCCATCTTCTTCCTTaGCTTCCCAGTGGGGTGAAG +
Preference number: 4 (lower is better)
Translates to: FSPTWGSGLWVIVLASSPLHLLP*LPSGVK
Trigger: CTTCACCCCACTGGGAAGGCAAGGAAGAAGATGGAG...GGGTGATGAGGCCAGGACTATCACCCAAAGACCAGAGCCCCATGTGGGAGAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp CTAAAAGACGTTCCTCGCAGGGACCTAGAGCTGGGCAAGCAGGGCAAAGTCCAGCTGAGCTACCTCCTTTaGGAGCTGCAACAGGTCATA +
Preference number: 4 (lower is better)
Translates to: LKDVPRRDLELGKQGKVQLSYLL*ELQQVI
Trigger: TATGACCTGTTGCAGCTCCCAAAGGAGGTAGCTCAG...CTGGACTTTGCCCTGCTTGCCCAGCTCTAGGTCCCTGCGAGGAACGTCTTTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp CTCTGGCTAGGGATGGTCAGCTTTGTGGAGTCTGAGCAGCCACTATCTACCAAGTCTCCACGCTCCACTTaGCCTGCTTCTCTTCCACCT +
Preference number: 4 (lower is better)
Translates to: LWLGMVSFVESEQPLSTKSPRST*PASLPP
Trigger: AGGTGGAAGAGAAGCAGGCCAAGTGGAGCGTGGAGA...CTTGGTAGATAGTGGCTGCTCAGACTCCACAAAGCTGACCATCCCTAGCCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp GTCTCTATGAAAGGATTACCTAAGCAGAAAGAGATAGCCGGACCCCAGCTACAACACCTGGACGTTGTCTaGGAGGGGCAGGTCCGGCTG +
Preference number: 4 (lower is better)
Translates to: VSMKGLPKQKEIAGPQLQHLDVV*EGQVRL
Trigger: CAGCCGGACCTGCCCCTCCCAGACAACGTCCAGGTG...TTGTAGCTGGGGTCCGGCTATCTCTTTCTGCTTAGGTAATCCTTTCATAGAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp ATGGGAAGAGCTCTGACTGCTGGGTCCTTCAGAGGTGGCAGCTCCCGAGAAACAACGCCATCTGCAAACTaGGTATCCAGACTCTGCACA +
Preference number: 4 (lower is better)
Translates to: MGRALTAGSFRGGSSRETTPSAN*VSRLCT
Trigger: TGTGCAGAGTCTGGATACCCAGTTTGCAGATGGCGT...TGTTTCTCGGGAGCTGCCACCTCTGAAGGACCCAGCAGTCAGAGCTCTTCCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR TCA 90 bp CATGCAGGGCCCCTCATCCACTTAAACGCAATTCATACACTGTCAAAATGCACGTCTTCCTCCGTGGGCTaGGCTACCTCCTTTGGGAGC +
Preference number: 4 (lower is better)
Translates to: HAGPLIHLNAIHTLSKCTSSSVG*ATSFGS
Trigger: GCTCCCAAAGGAGGTAGCTCAGCCCACGGAGGAAGA...CGTGCATTTTGACAGTGTATGAATTGCGTTTAAGTGGATGAGGGGCCCTGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp CTAAAAGACGTTCCTCGCAGGGACCTAGAGCTGGGCAAGCAGGGCAAAGTCCAGTCCATCAGCACCTTCTaGAGTTCTTCAAACTTGGGG +
Preference number: 4 (lower is better)
Translates to: LKDVPRRDLELGKQGKVQSISTF*SSSNLG
Trigger: CCCCAAGTTTGAAGAACTGCAGAAGGTGCTGATGGA...CTGGACTTTGCCCTGCTTGCCCAGCTCTAGGTCCCTGCGAGGAACGTCTTTTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp AGAGACCATGGCCTGAGACCATCAGCCTTAACCCCAAAGAGCCTCTGGCTAGGGTCCATCAGCACCTTCTaGAGTTCTTCAAACTTGGGG +
Preference number: 4 (lower is better)
Translates to: RDHGLRPSALTPKSLWLGSISTF*SSSNLG
Trigger: CCCCAAGTTTGAAGAACTGCAGAAGGTGCTGATGGA...CCCTAGCCAGAGGCTCTTTGGGGTTAAGGCTGATGGTCTCAGGCCATGGTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp TTGTGGAGTCTGAGCAGCCACTATCTACCAAGGTATAGCCTTAGTAGACAGACTGCCTCTTGGACGGCGTaGACTTTCTCCGGAGCCAGC +
Preference number: 4 (lower is better)
Translates to: LWSLSSHYLPRYSLSRQTASWTA*TFSGAS
Trigger: GCTGGCTCCGGAGAAAGTGCACGCCGTCCAAGAGGC...AGTCTGTCTACTAAGGCTATACCTTGGTAGATAGTGGCTGCTCAGACTCCACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp TTGTGGAGTCTGAGCAGCCACTATCTACCAAGGTATAGCCTTAGTAGACAGACTCCGGCTGGAAGCGTTTaGCCAGGGCCACCAGGAGAT +
Preference number: 4 (lower is better)
Translates to: LWSLSSHYLPRYSLSRQTPAGSV*PGPPGD
Trigger: ATCTCCTGGTGGCCCTGGCCAAACGCTTCCAGCCGG...AGTCTGTCTACTAAGGCTATACCTTGGTAGATAGTGGCTGCTCAGACTCCACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp TTTTCTCCCACATGGGGCTCTGGTCTTTGGGTGATAGTCCTGGCCTCATCACCCACGCCATCTGCAAACTaGGTATCCAGACTCTGCACA +
Preference number: 4 (lower is better)
Translates to: FSPTWGSGLWVIVLASSPTPSAN*VSRLCT
Trigger: TGTGCAGAGTCTGGATACCCAGTTTGCAGATGGCGT...GGGTGATGAGGCCAGGACTATCACCCAAAGACCAGAGCCCCATGTGGGAGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR TCA 90 bp ATCTCCTCCCACAACTTCTCCTCCTCCATGGACCCAGCTCAGTTATTCAGCTGTGGAGGAGTGTGGTGTTaGTCCATTCCATCAGCACCT +
Preference number: 4 (lower is better)
Translates to: ISSHNFSSSMDPAQLFSCGGVWC*SIPSAP
Trigger: AGGTGCTGATGGAATGGATCAACACCACACTCCTCC...ACAGCTGAATAACTGAGCTGGGTCCATGGAGGAGGAGAAGTTGTGGGAGGAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp GTCTCTATGAAAGGATTACCTAAGCAGAAAGAGATAGCCGGACCCCAGCTACAATGGGTATCCAGACTCTaGACAGACAGGCCCAGGCGC +
Preference number: 4 (lower is better)
Translates to: VSMKGLPKQKEIAGPQLQWVSRL*TDRPRR
Trigger: GCGCCTGGGCCTGTCTGTGCAGAGTCTGGATACCCA...TTGTAGCTGGGGTCCGGCTATCTCTTTCTGCTTAGGTAATCCTTTCATAGAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp TTGTGGAGTCTGAGCAGCCACTATCTACCAAGGTATAGCCTTAGTAGACAGACTTGGGTATCCAGACTCTaGACAGACAGGCCCAGGCGC +
Preference number: 4 (lower is better)
Translates to: LWSLSSHYLPRYSLSRQTWVSRL*TDRPRR
Trigger: GCGCCTGGGCCTGTCTGTGCAGAGTCTGGATACCCA...AGTCTGTCTACTAAGGCTATACCTTGGTAGATAGTGGCTGCTCAGACTCCACAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp CTCTGGCTAGGGATGGTCAGCTTTGTGGAGTCTGAGCAGCCACTATCTACCAAGGCGTCCTGTAAAGGCTaGTCCTTGTGTGACTTGCAT +
Preference number: 4 (lower is better)
Translates to: LWLGMVSFVESEQPLSTKASCKG*SLCDLH
Trigger: ATGCAAGTCACACAAGGACCAGCCTTTACAGGACGC...CTTGGTAGATAGTGGCTGCTCAGACTCCACAAAGCTGACCATCCCTAGCCAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp CTAAAAGACGTTCCTCGCAGGGACCTAGAGCTGGGCAAGCAGGGCAAAGTCCAGAACTTCTGGAACAGGTaGTGCAGAATAAGTCCATCA +
Preference number: 4 (lower is better)
Translates to: LKDVPRRDLELGKQGKVQNFWNR*CRISPS
Trigger: TGATGGACTTATTCTGCACCACCTGTTCCAGAAGTT...CTGGACTTTGCCCTGCTTGCCCAGCTCTAGGTCCCTGCGAGGAACGTCTTTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp AACCCAGGACTTCACAGGCATGCAGGGCCCCTCATCCACTTAAACGCAATTCATGCGTCCTGTAAAGGCTaGTCCTTGTGTGACTTGCAT +
Preference number: 4 (lower is better)
Translates to: NPGLHRHAGPLIHLNAIHASCKG*SLCDLH
Trigger: ATGCAAGTCACACAAGGACCAGCCTTTACAGGACGC...ATGAATTGCGTTTAAGTGGATGAGGGGCCCTGCATGCCTGTGAAGTCCTGGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR TCA 90 bp CATGCAGGGCCCCTCATCCACTTAAACGCAATTCATACACTGTCAAAATGCACGAGGCTGGTCCTTGTGTaGCTTGCATTCTGTGAGCTG +
Preference number: 4 (lower is better)
Translates to: HAGPLIHLNAIHTLSKCTRLVLV*LAFCEL
Trigger: CAGCTCACAGAATGCAAGTCACACAAGGACCAGCCT...CGTGCATTTTGACAGTGTATGAATTGCGTTTAAGTGGATGAGGGGCCCTGCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp GTCTCTATGAAAGGATTACCTAAGCAGAAAGAGATAGCCGGACCCCAGCTACAAACGCTCCACTTGGCCTaGTTCTCTTCCACCTGTAGG +
Preference number: 4 (lower is better)
Translates to: VSMKGLPKQKEIAGPQLQTLHLA*FSSTCR
Trigger: CCTACAGGTGGAAGAGAAGCAGGCCAAGTGGAGCGT...TTGTAGCTGGGGTCCGGCTATCTCTTTCTGCTTAGGTAATCCTTTCATAGAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp TTGTGGAGTCTGAGCAGCCACTATCTACCAAGGTATAGCCTTAGTAGACAGACTGAAGCTCTTCCTCCGTaGGCTGAGCTACCTCCTTTG +
Preference number: 4 (lower is better)
Translates to: LWSLSSHYLPRYSLSRQTEALPP*AELPPL
Trigger: CAAAGGAGGTAGCTCAGCCCACGGAGGAAGAGCTTC...AGTCTGTCTACTAAGGCTATACCTTGGTAGATAGTGGCTGCTCAGACTCCACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp AAAGCCCCAGACCTCCTCACATCAGACACCAGAGCCCCAGAACACGTAGCTCCAGGTTCCTCTTGGAATTaGGTGACAGATATTTCTTCT +
Preference number: 4 (lower is better)
Translates to: KAPDLLTSDTRAPEHVAPGSSWN*VTDISS
Trigger: AGAAGAAATATCTGTCACCCAATTCCAAGAGGAACC...TGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGATGTGAGGAGGTCTGGGGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp AAGAGCCTCTGGCTAGGGATGGTCAGCTTTGTGGAGTCTGAGCAGCCACTATCTTCCTCAGTGTGCTCTTaGCGTCCTTGTTCACAATAT +
Preference number: 4 (lower is better)
Translates to: KSLWLGMVSFVESEQPLSSSVCS*RPCSQY
Trigger: ATATTGTGAACAAGGACGCCAAGAGCACACTGAGGA...AGATAGTGGCTGCTCAGACTCCACAAAGCTGACCATCCCTAGCCAGAGGCTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp GTATATAGAGACCATGGCCTGAGACCATCAGCCTTAACCCCAAAGAGCCTCTGGAAAGTATCCTCAGTGTaGTCTTGGCGTCCTTGTTCA +
Preference number: 4 (lower is better)
Translates to: VYRDHGLRPSALTPKSLWKVSSV*SWRPCS
Trigger: TGAACAAGGACGCCAAGAGCACACTGAGGATACTTT...CCAGAGGCTCTTTGGGGTTAAGGCTGATGGTCTCAGGCCATGGTCTCTATATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp GGGACATGTCCCAGAGGTAACAGGACAGGAGATATCCCTCTAACACTTATGAGTCTGAGCTACCTCCTTTaGGAGCTGCAACAGGTCATA +
Preference number: 4 (lower is better)
Translates to: GTCPRGNRTGDIPLTLMSLSYLL*ELQQVI
Trigger: TATGACCTGTTGCAGCTCCCAAAGGAGGTAGCTCAG...ACTCATAAGTGTTAGAGGGATATCTCCTGTCCTGTTACCTCTGGGACATGTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp CTCTGGCTAGGGATGGTCAGCTTTGTGGAGTCTGAGCAGCCACTATCTACCAAGACTTGGGGTTCCTCTTaGAATTGGGTGACAGATATT +
Preference number: 4 (lower is better)
Translates to: LWLGMVSFVESEQPLSTKTWGSS*NWVTDI
Trigger: AATATCTGTCACCCAATTCCAAGAGGAACCCCAAGT...CTTGGTAGATAGTGGCTGCTCAGACTCCACAAAGCTGACCATCCCTAGCCAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp AACCCAGGACTTCACAGGCATGCAGGGCCCCTCATCCACTTAAACGCAATTCATGCAGTTCTTCAAACTTaGGGTTCCTCTTGGAATTGG +
Preference number: 4 (lower is better)
Translates to: NPGLHRHAGPLIHLNAIHAVLQT*GSSWNW
Trigger: CCAATTCCAAGAGGAACCCCAAGTTTGAAGAACTGC...ATGAATTGCGTTTAAGTGGATGAGGGGCCCTGCATGCCTGTGAAGTCCTGGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp GTATATAGAGACCATGGCCTGAGACCATCAGCCTTAACCCCAAAGAGCCTCTGGGCAGTTCTTCAAACTTaGGGTTCCTCTTGGAATTGG +
Preference number: 4 (lower is better)
Translates to: VYRDHGLRPSALTPKSLWAVLQT*GSSWNW
Trigger: CCAATTCCAAGAGGAACCCCAAGTTTGAAGAACTGC...CCAGAGGCTCTTTGGGGTTAAGGCTGATGGTCTCAGGCCATGGTCTCTATATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp CTCTGGCTAGGGATGGTCAGCTTTGTGGAGTCTGAGCAGCCACTATCTACCAAGAACTTCTGGAACAGGTaGTGCAGAATAAGTCCATCA +
Preference number: 4 (lower is better)
Translates to: LWLGMVSFVESEQPLSTKNFWNR*CRISPS
Trigger: TGATGGACTTATTCTGCACCACCTGTTCCAGAAGTT...CTTGGTAGATAGTGGCTGCTCAGACTCCACAAAGCTGACCATCCCTAGCCAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp GACAGACTGGATGCTGATGAGGGCTGGTCTCGCCTGGGAATCAAACTCTTTTTCTCCTCAGTGTGCTCTTaGCGTCCTTGTTCACAATAT +
Preference number: 4 (lower is better)
Translates to: DRLDADEGWSRLGIKLFFSSVCS*RPCSQY
Trigger: ATATTGTGAACAAGGACGCCAAGAGCACACTGAGGA...GAAAAAGAGTTTGATTCCCAGGCGAGACCAGCCCTCATCAGCATCCAGTCTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp ATCTCCTCCCACAACTTCTCCTCCTCCATGGACCCAGCTCAGTTATTCAGCTGTTTCTGGAACAGGTGGTaGAGAATAAGTCCATCAAAC +
Preference number: 4 (lower is better)
Translates to: ISSHNFSSSMDPAQLFSCFWNRW*RISPSN
Trigger: GTTTGATGGACTTATTCTGCACCACCTGTTCCAGAA...ACAGCTGAATAACTGAGCTGGGTCCATGGAGGAGGAGAAGTTGTGGGAGGAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp GTCTCTATGAAAGGATTACCTAAGCAGAAAGAGATAGCCGGACCCCAGCTACAAGCTAGGGTGACATTGTaGAGCATTTCTGTGGGAGAG +
Preference number: 4 (lower is better)
Translates to: VSMKGLPKQKEIAGPQLQARVTL*SISVGE
Trigger: CTCTCCCACAGAAATGCTGCACAATGTCACCCTAGC...TTGTAGCTGGGGTCCGGCTATCTCTTTCTGCTTAGGTAATCCTTTCATAGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp AAGAGCCTCTGGCTAGGGATGGTCAGCTTTGTGGAGTCTGAGCAGCCACTATCTGGTTCCTCTTGGAATTaGGTGACAGATATTTCTTCT +
Preference number: 4 (lower is better)
Translates to: KSLWLGMVSFVESEQPLSGSSWN*VTDISS
Trigger: AGAAGAAATATCTGTCACCCAATTCCAAGAGGAACC...AGATAGTGGCTGCTCAGACTCCACAAAGCTGACCATCCCTAGCCAGAGGCTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CCA 90 bp AACCCAGGACTTCACAGGCATGCAGGGCCCCTCATCCACTTAAACGCAATTCATACTTGGGGTTCCTCTTaGAATTGGGTGACAGATATT +
Preference number: 4 (lower is better)
Translates to: NPGLHRHAGPLIHLNAIHTWGSS*NWVTDI
Trigger: AATATCTGTCACCCAATTCCAAGAGGAACCCCAAGT...ATGAATTGCGTTTAAGTGGATGAGGGGCCCTGCATGCCTGTGAAGTCCTGGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp GGTGGGCACAAAATAGGTCCCCATCTGGTAGAGTCAAAGGTAAGCAGAGGTCAATTCTGGAACAGGTGGTaGAGAATAAGTCCATCAAAC +
Preference number: 4 (lower is better)
Translates to: GGHKIGPHLVESKVSRGQFWNRW*RISPSN
Trigger: GTTTGATGGACTTATTCTGCACCACCTGTTCCAGAA...TTGACCTCTGCTTACCTTTGACTCTACCAGATGGGGACCTATTTTGTGCCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR GCA 90 bp AGTTATTCAGCTGTTCCTCTCTCTTTTCAGAAGACACCAAGTCTCACGGGACAGAAAGTATCCTCAGTGTaGTCTTGGCGTCCTTGTTCA +
Preference number: 4 (lower is better)
Translates to: SYSAVPLSFQKTPSLTGQKVSSV*SWRPCS
Trigger: TGAACAAGGACGCCAAGAGCACACTGAGGATACTTT...CTGTCCCGTGAGACTTGGTGTCTTCTGAAAAGAGAGAGGAACAGCTGAATAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 90 bp CCACCTGGACGTTGTCTGGGAGGGGCAGGTCCGGCTGGAAGCGTTTaGCCAGGGCCACCAGGAGATGCAAGGTGGCCAGCAGGTCCTTGT +
Preference number: 5 (lower is better)
Translates to: PPGRCLGGAGPAGSV*PGPPGDARWPAGPC
Trigger: ACAAGGACCTGCTGGCCACCTTGCATCTCCTGGTGGCCCTGGCCAAACGCTTCCAGCCGGACCTGCCCCTCCCAGACAACGTCCAGGTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 90 bp TGGATGACTTCCACCTGGACGTTGTCTGGGAGGGGCAGGTCCGGCTaGAAGCGTTTGGCCAGGGCCACCAGGAGATGCAAGGTGGCCAGC +
Preference number: 5 (lower is better)
Translates to: WMTSTWTLSGRGRSG*KRLARATRRCKVAS
Trigger: GCTGGCCACCTTGCATCTCCTGGTGGCCCTGGCCAAACGCTTCCAGCCGGACCTGCCCCTCCCAGACAACGTCCAGGTGGAAGTCATCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 90 bp GGTCTTGGTGCTCTCAATGTGGATGACTTCCACCTGGACGTTGTCTaGGAGGGGCAGGTCCGGCTGGAAGCGTTTGGCCAGGGCCACCAG +
Preference number: 5 (lower is better)
Translates to: GLGALNVDDFHLDVV*EGQVRLEAFGQGHQ
Trigger: CTGGTGGCCCTGGCCAAACGCTTCCAGCCGGACCTGCCCCTCCCAGACAACGTCCAGGTGGAAGTCATCCACATTGAGAGCACCAAGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS TCA 90 bp CCTGCTTGTCCGACTTCAGGCCGGTCTTGGTGCTCTCAATGTGGATaGCTTCCACCTGGACGTTGTCTGGGAGGGGCAGGTCCGGCTGGA +
Preference number: 5 (lower is better)
Translates to: PACPTSGRSWCSQCG*LPPGRCLGGAGPAG
Trigger: TCCAGCCGGACCTGCCCCTCCCAGACAACGTCCAGGTGGAAGTCATCCACATTGAGAGCACCAAGACCGGCCTGAAGTCGGACAAGCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 90 bp GTCTCCACGCTCCACTTGGCCTGCTTCTCTTCCACCTGTAGGTTCTaGTTGACGGCCTCCAGGATGACCCCCAGCTTGTGCCTCTGGCTG +
Preference number: 5 (lower is better)
Translates to: VSTLHLACFSSTCRF*LTASRMTPSLCLWL
Trigger: CAGCCAGAGGCACAAGCTGGGGGTCATCCTGGAGGCCGTCAACCAGAACCTACAGGTGGAAGAGAAGCAGGCCAAGTGGAGCGTGGAGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 90 bp GACTTCAGGCCGGTCTTGGTGCTCTCAATGTGGATGACTTCCACCTaGACGTTGTCTGGGAGGGGCAGGTCCGGCTGGAAGCGTTTGGCC +
Preference number: 5 (lower is better)
Translates to: DFRPVLVLSMWMTST*TLSGRGRSGWKRLA
Trigger: GGCCAAACGCTTCCAGCCGGACCTGCCCCTCCCAGACAACGTCCAGGTGGAAGTCATCCACATTGAGAGCACCAAGACCGGCCTGAAGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 90 bp TCCACCTGCTTGTCCGACTTCAGGCCGGTCTTGGTGCTCTCAATGTaGATGACTTCCACCTGGACGTTGTCTGGGAGGGGCAGGTCCGGC +
Preference number: 5 (lower is better)
Translates to: STCLSDFRPVLVLSM*MTSTWTLSGRGRSG
Trigger: GCCGGACCTGCCCCTCCCAGACAACGTCCAGGTGGAAGTCATCCACATTGAGAGCACCAAGACCGGCCTGAAGTCGGACAAGCAGGTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp CCTAGGGCCAAAGGGACAAGTGGAATGGAGCTGGGTAGAGAAAAGCCCCAGACCAGGATGACCCCCAGCTaGTGCCTCTGGCTGGCCGAG +
Preference number: 5 (lower is better)
Translates to: PRAKGTSGMELGREKPQTRMTPS*CLWLAE
Trigger: CTCGGCCAGCCAGAGGCACAAGCTGGGGGTCATCCT...GGTCTGGGGCTTTTCTCTACCCAGCTCCATTCCACTTGTCCCTTTGGCCCTAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp ATCAGACACCAGAGCCCCAGAACACGTAGCTCCACCGACTGTGGTTGTAGGGGTTCCGGCTGGAAGCGTTaGGCCAGGGCCACCAGGAGA +
Preference number: 5 (lower is better)
Translates to: IRHQSPRTRSSTDCGCRGSGWKR*ARATRR
Trigger: TCTCCTGGTGGCCCTGGCCAAACGCTTCCAGCCGGA...ACCCCTACAACCACAGTCGGTGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp CTAAAAGACGTTCCTCGCAGGGACCTAGAGCTGGGCAAGCAGGGCAAAGTCCAGTCCGGCTGGAAGCGTTaGGCCAGGGCCACCAGGAGA +
Preference number: 5 (lower is better)
Translates to: LKDVPRRDLELGKQGKVQSGWKR*ARATRR
Trigger: TCTCCTGGTGGCCCTGGCCAAACGCTTCCAGCCGGA...CTGGACTTTGCCCTGCTTGCCCAGCTCTAGGTCCCTGCGAGGAACGTCTTTTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS GCA 90 bp ACCTGTAGGTTCTGGTTGACGGCCTCCAGGATGACCCCCAGCTTGTaGCTCTGGCTGGCCGAGGTCAGAGAGATTTCCTCCACTTCCAGC +
Preference number: 5 (lower is better)
Translates to: TCRFWLTASRMTPSL*LWLAEVREISSTSS
Trigger: GCTGGAAGTGGAGGAAATCTCTCTGACCTCGGCCAGCCAGAGGCACAAGCTGGGGGTCATCCTGGAGGCCGTCAACCAGAACCTACAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 90 bp AGGTTCTGGTTGACGGCCTCCAGGATGACCCCCAGCTTGTGCCTCTaGCTGGCCGAGGTCAGAGAGATTTCCTCCACTTCCAGCTTGAGC +
Preference number: 5 (lower is better)
Translates to: RFWLTASRMTPSLCL*LAEVREISSTSSLS
Trigger: GCTCAAGCTGGAAGTGGAGGAAATCTCTCTGACCTCGGCCAGCCAGAGGCACAAGCTGGGGGTCATCCTGGAGGCCGTCAACCAGAACCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS GCA 90 bp GCCAGCAGGTCCTTGTTGAAGATGGTCTCCACGCTCCACTTGGCCTaGTTCTCTTCCACCTGTAGGTTCTGGTTGACGGCCTCCAGGATG +
Preference number: 5 (lower is better)
Translates to: ASRSLLKMVSTLHLA*FSSTCRFWLTASRM
Trigger: CATCCTGGAGGCCGTCAACCAGAACCTACAGGTGGAAGAGAAGCAGGCCAAGTGGAGCGTGGAGACCATCTTCAACAAGGACCTGCTGGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS TCA 90 bp CAAAGGCGTCCTGTAAAGGCTGGTCCTTGTGTGACTTGCATTCTGTaGGCTGCTCCACCTGCTTGTCCGACTTCAGGCCGGTCTTGGTGC +
Preference number: 5 (lower is better)
Translates to: QRRPVKAGPCVTCIL*AAPPACPTSGRSWC
Trigger: GCACCAAGACCGGCCTGAAGTCGGACAAGCAGGTGGAGCAGCTCACAGAATGCAAGTCACACAAGGACCAGCCTTTACAGGACGCCTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS TCA 90 bp TATCCAGACTCTGCACAGACAGGCCCAGGCGCTCTAGCTTCTGGTTaGCAAAGCTCACAATGGCCTCTTGGACGGCGTGCACTTTCTCCG +
Preference number: 5 (lower is better)
Translates to: YPDSAQTGPGALASG*QSSQWPLGRRALSP
Trigger: CGGAGAAAGTGCACGCCGTCCAAGAGGCCATTGTGAGCTTTGTCAACCAGAAGCTAGAGCGCCTGGGCCTGTCTGTGCAGAGTCTGGATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS GCA 90 bp GCGTCCTGTAAAGGCTGGTCCTTGTGTGACTTGCATTCTGTGAGCTaGTCCACCTGCTTGTCCGACTTCAGGCCGGTCTTGGTGCTCTCA +
Preference number: 5 (lower is better)
Translates to: ASCKGWSLCDLHSVS*STCLSDFRPVLVLS
Trigger: TGAGAGCACCAAGACCGGCCTGAAGTCGGACAAGCAGGTGGAGCAGCTCACAGAATGCAAGTCACACAAGGACCAGCCTTTACAGGACGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS GCA 90 bp AGCAGGAGCAGGATGACGCCATCTGCAAACTGGGTATCCAGACTCTaGACAGACAGGCCCAGGCGCTCTAGCTTCTGGTTGACAAAGCTC +
Preference number: 5 (lower is better)
Translates to: SRSRMTPSANWVSRL*TDRPRRSSFWLTKL
Trigger: GAGCTTTGTCAACCAGAAGCTAGAGCGCCTGGGCCTGTCTGTGCAGAGTCTGGATACCCAGTTTGCAGATGGCGTCATCCTGCTCCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 90 bp TGGGTATCCAGACTCTGCACAGACAGGCCCAGGCGCTCTAGCTTCTaGTTGACAAAGCTCACAATGGCCTCTTGGACGGCGTGCACTTTC +
Preference number: 5 (lower is better)
Translates to: WVSRLCTDRPRRSSF*LTKLTMASWTACTF
Trigger: GAAAGTGCACGCCGTCCAAGAGGCCATTGTGAGCTTTGTCAACCAGAAGCTAGAGCGCCTGGGCCTGTCTGTGCAGAGTCTGGATACCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp ATCAGACACCAGAGCCCCAGAACACGTAGCTCCACCGACTGTGGTTGTAGGGGTTCCTCCACTTCCAGCTaGAGCGATGCCAACTTCTGG +
Preference number: 5 (lower is better)
Translates to: IRHQSPRTRSSTDCGCRGSSTSS*SDANFW
Trigger: CCAGAAGTTGGCATCGCTCAAGCTGGAAGTGGAGGA...ACCCCTACAACCACAGTCGGTGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp GGAATGGAGCTGGGTAGAGAAAAGCCCCAGACCTCCTCACATCAGACACCAGAGGCCAGCAGGTCCTTGTaGAAGATGGTCTCCACGCTC +
Preference number: 5 (lower is better)
Translates to: GMELGREKPQTSSHQTPEASRSL*KMVSTL
Trigger: GAGCGTGGAGACCATCTTCAACAAGGACCTGCTGGC...CTCTGGTGTCTGATGTGAGGAGGTCTGGGGCTTTTCTCTACCCAGCTCCATTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp TGCCCTGGCCAGACTCTGCTCCAAAATTCCCCAAAGGCAAAGCTGTTCGGCTATACCTGTAGGTTCTGGTaGACGGCCTCCAGGATGACC +
Preference number: 5 (lower is better)
Translates to: CPGQTLLQNSPKAKLFGYTCRFW*TASRMT
Trigger: GGTCATCCTGGAGGCCGTCAACCAGAACCTACAGGT...ATAGCCGAACAGCTTTGCCTTTGGGGAATTTTGGAGCAGAGTCTGGCCAGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp AAAGCCCCAGACCTCCTCACATCAGACACCAGAGCCCCAGAACACGTAGCTCCACGCTCTAGCTTCTGGTaGACAAAGCTCACAATGGCC +
Preference number: 5 (lower is better)
Translates to: KAPDLLTSDTRAPEHVAPRSSFW*TKLTMA
Trigger: GGCCATTGTGAGCTTTGTCAACCAGAAGCTAGAGCG...TGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGATGTGAGGAGGTCTGGGGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp ATGGGAAGAGCTCTGACTGCTGGGTCCTTCAGAGGTGGCAGCTCCCGAGAAACAGAAGAAGCCTTCCAGTaGTCCAATCAGCAGGAGCAG +
Preference number: 5 (lower is better)
Translates to: MGRALTAGSFRGGSSRETEEAFQ*SNQQEQ
Trigger: CTGCTCCTGCTGATTGGACAACTGGAAGGCTTCTTC...TGTTTCTCGGGAGCTGCCACCTCTGAAGGACCCAGCAGTCAGAGCTCTTCCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS GCA 90 bp AAAGGCTGGTCCTTGTGTGACTTGCATTCTGTGAGCTGCTCCACCTaGTTGTCCGACTTCAGGCCGGTCTTGGTGCTCTCAATGTGGATG +
Preference number: 5 (lower is better)
Translates to: KGWSLCDLHSVSCST*LSDFRPVLVLSMWM
Trigger: CATCCACATTGAGAGCACCAAGACCGGCCTGAAGTCGGACAAGCAGGTGGAGCAGCTCACAGAATGCAAGTCACACAAGGACCAGCCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp AGTTATTCAGCTGTTCCTCTCTCTTTTCAGAAGACACCAAGTCTCACGGGACAGAGGATGACCCCCAGCTaGTGCCTCTGGCTGGCCGAG +
Preference number: 5 (lower is better)
Translates to: SYSAVPLSFQKTPSLTGQRMTPS*CLWLAE
Trigger: CTCGGCCAGCCAGAGGCACAAGCTGGGGGTCATCCT...CTGTCCCGTGAGACTTGGTGTCTTCTGAAAAGAGAGAGGAACAGCTGAATAACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp TTAAACGCAATTCATACACTGTCAAAATGCACGGAGCAAAGCAGGGGTGGGCACACTTCCACCTGGACGTaGTCTGGGAGGGGCAGGTCC +
Preference number: 5 (lower is better)
Translates to: LNAIHTLSKCTEQSRGGHTSTWT*SGRGRS
Trigger: GGACCTGCCCCTCCCAGACAACGTCCAGGTGGAAGT...GTGCCCACCCCTGCTTTGCTCCGTGCATTTTGACAGTGTATGAATTGCGTTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp GGAATGGAGCTGGGTAGAGAAAAGCCCCAGACCTCCTCACATCAGACACCAGAGGAAGAAGCCTTCCAGTaGTCCAATCAGCAGGAGCAG +
Preference number: 5 (lower is better)
Translates to: GMELGREKPQTSSHQTPEEEAFQ*SNQQEQ
Trigger: CTGCTCCTGCTGATTGGACAACTGGAAGGCTTCTTC...CTCTGGTGTCTGATGTGAGGAGGTCTGGGGCTTTTCTCTACCCAGCTCCATTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp AAAGCCCCAGACCTCCTCACATCAGACACCAGAGCCCCAGAACACGTAGCTCCAGTGCTCTTGGCGTCCTaGTTCACAATATCTTCAGGG +
Preference number: 5 (lower is better)
Translates to: KAPDLLTSDTRAPEHVAPVLLAS*FTISSG
Trigger: CCCTGAAGATATTGTGAACAAGGACGCCAAGAGCAC...TGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGATGTGAGGAGGTCTGGGGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp CCTAGGGCCAAAGGGACAAGTGGAATGGAGCTGGGTAGAGAAAAGCCCCAGACCGTGCTCTTGGCGTCCTaGTTCACAATATCTTCAGGG +
Preference number: 5 (lower is better)
Translates to: PRAKGTSGMELGREKPQTVLLAS*FTISSG
Trigger: CCCTGAAGATATTGTGAACAAGGACGCCAAGAGCAC...GGTCTGGGGCTTTTCTCTACCCAGCTCCATTCCACTTGTCCCTTTGGCCCTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS GCA 90 bp ATAAGTCCATCAAACATGTCTTCCTCCAGGCTGCGGACCACGATGTaGTCCGGGAGGAGTGTGGTGTTGATCCATTCCATCAGCACCTTC +
Preference number: 5 (lower is better)
Translates to: ISPSNMSSSRLRTTM*SGRSVVLIHSISTF
Trigger: GAAGGTGCTGATGGAATGGATCAACACCACACTCCTCCCGGAGCACATCGTGGTCCGCAGCCTGGAGGAAGACATGTTTGATGGACTTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp GACAGACTGGATGCTGATGAGGGCTGGTCTCGCCTGGGAATCAAACTCTTTTTCGCTGAGCTACCTCCTTaGGGAGCTGCAACAGGTCAT +
Preference number: 5 (lower is better)
Translates to: DRLDADEGWSRLGIKLFFAELPP*GAATGH
Trigger: ATGACCTGTTGCAGCTCCCAAAGGAGGTAGCTCAGC...GAAAAAGAGTTTGATTCCCAGGCGAGACCAGCCCTCATCAGCATCCAGTCTGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp GTCTCTATGAAAGGATTACCTAAGCAGAAAGAGATAGCCGGACCCCAGCTACAAACTTCCACCTGGACGTaGTCTGGGAGGGGCAGGTCC +
Preference number: 5 (lower is better)
Translates to: VSMKGLPKQKEIAGPQLQTSTWT*SGRGRS
Trigger: GGACCTGCCCCTCCCAGACAACGTCCAGGTGGAAGT...TTGTAGCTGGGGTCCGGCTATCTCTTTCTGCTTAGGTAATCCTTTCATAGAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 90 bp GTGACAGATATTTCTTCTTTCCTCCTCGTGGAAGCTCTTCCTCCGTaGGCTGAGCTACCTCCTTTGGGAGCTGCAACAGGTCATAGAGGA +
Preference number: 5 (lower is better)
Translates to: VTDISSFLLVEALPP*AELPPLGAATGHRG
Trigger: TCCTCTATGACCTGTTGCAGCTCCCAAAGGAGGTAGCTCAGCCCACGGAGGAAGAGCTTCCACGAGGAGGAAAGAAGAAATATCTGTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023074.9
ENSMUST00000125928.8
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp ATCAGACACCAGAGCCCCAGAACACGTAGCTCCACCGACTGTGGTTGTAGGGGTGGGTTCCTCTTGGAATaGGGTGACAGATATTTCTTC +
Preference number: 5 (lower is better)
Translates to: IRHQSPRTRSSTDCGCRGGFLLE*GDRYFF
Trigger: GAAGAAATATCTGTCACCCAATTCCAAGAGGAACCC...ACCCCTACAACCACAGTCGGTGGAGCTACGTGTTCTGGGGCTCTGGTGTCTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp AGAGACCATGGCCTGAGACCATCAGCCTTAACCCCAAAGAGCCTCTGGCTAGGGTGCAGTTCTTCAAACTaGGGGTTCCTCTTGGAATTG +
Preference number: 5 (lower is better)
Translates to: RDHGLRPSALTPKSLWLGCSSSN*GFLLEL
Trigger: CAATTCCAAGAGGAACCCCAAGTTTGAAGAACTGCA...CCCTAGCCAGAGGCTCTTTGGGGTTAAGGCTGATGGTCTCAGGCCATGGTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp CATGCAGGGCCCCTCATCCACTTAAACGCAATTCATACACTGTCAAAATGCACGACCTGTAGGTTCTGGTaGACGGCCTCCAGGATGACC +
Preference number: 5 (lower is better)
Translates to: HAGPLIHLNAIHTLSKCTTCRFW*TASRMT
Trigger: GGTCATCCTGGAGGCCGTCAACCAGAACCTACAGGT...CGTGCATTTTGACAGTGTATGAATTGCGTTTAAGTGGATGAGGGGCCCTGCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS GCA 90 bp GCTGGCCGAGGTCAGAGAGATTTCCTCCACTTCCAGCTTGAGCGATaGCAACTTCTGGAACAGGTGGTGCAGAATAAGTCCATCAAACAT +
Preference number: 5 (lower is better)
Translates to: AGRGQRDFLHFQLER*QLLEQVVQNKSIKH
Trigger: ATGTTTGATGGACTTATTCTGCACCACCTGTTCCAGAAGTTGGCATCGCTCAAGCTGGAAGTGGAGGAAATCTCTCTGACCTCGGCCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023074.9
ENSMUST00000145809.2
ENSMUST00000163667.2
CDS CCA 90 bp ATTTCCTCCACTTCCAGCTTGAGCGATGCCAACTTCTGGAACAGGTaGTGCAGAATAAGTCCATCAAACATGTCTTCCTCCAGGCTGCGG +
Preference number: 5 (lower is better)
Translates to: ISSTSSLSDANFWNR*CRISPSNMSSSRLR
Trigger: CCGCAGCCTGGAGGAAGACATGTTTGATGGACTTATTCTGCACCACCTGTTCCAGAAGTTGGCATCGCTCAAGCTGGAAGTGGAGGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023074.9
ENSMUST00000145809.2
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp GGGACATGTCCCAGAGGTAACAGGACAGGAGATATCCCTCTAACACTTATGAGTTCCTCCACTTCCAGCTaGAGCGATGCCAACTTCTGG +
Preference number: 5 (lower is better)
Translates to: GTCPRGNRTGDIPLTLMSSSTSS*SDANFW
Trigger: CCAGAAGTTGGCATCGCTCAAGCTGGAAGTGGAGGA...ACTCATAAGTGTTAGAGGGATATCTCCTGTCCTGTTACCTCTGGGACATGTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp TGCCCTGGCCAGACTCTGCTCCAAAATTCCCCAAAGGCAAAGCTGTTCGGCTATATCCTCAGTGTGCTCTaGGCGTCCTTGTTCACAATA +
Preference number: 5 (lower is better)
Translates to: CPGQTLLQNSPKAKLFGYILSVL*ASLFTI
Trigger: TATTGTGAACAAGGACGCCAAGAGCACACTGAGGAT...ATAGCCGAACAGCTTTGCCTTTGGGGAATTTTGGAGCAGAGTCTGGCCAGGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 90 bp TCCGGAGCCAGCTTAAATAATTCATCAAAGGCGTCCTGTAAAGGCTaGTCCTTGTGTGACTTGCATTCTGTGAGCTGCTCCACCTGCTTG +
Preference number: 5 (lower is better)
Translates to: SGASLNNSSKASCKG*SLCDLHSVSCSTCL
Trigger: CAAGCAGGTGGAGCAGCTCACAGAATGCAAGTCACACAAGGACCAGCCTTTACAGGACGCCTTTGATGAATTATTTAAGCTGGCTCCGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp TTGTGGAGTCTGAGCAGCCACTATCTACCAAGGTATAGCCTTAGTAGACAGACTGCTGAGCTACCTCCTTaGGGAGCTGCAACAGGTCAT +
Preference number: 5 (lower is better)
Translates to: LWSLSSHYLPRYSLSRQTAELPP*GAATGH
Trigger: ATGACCTGTTGCAGCTCCCAAAGGAGGTAGCTCAGC...AGTCTGTCTACTAAGGCTATACCTTGGTAGATAGTGGCTGCTCAGACTCCACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp TTAAACGCAATTCATACACTGTCAAAATGCACGGAGCAAAGCAGGGGTGGGCACCGCTCTAGCTTCTGGTaGACAAAGCTCACAATGGCC +
Preference number: 5 (lower is better)
Translates to: LNAIHTLSKCTEQSRGGHRSSFW*TKLTMA
Trigger: GGCCATTGTGAGCTTTGTCAACCAGAAGCTAGAGCG...GTGCCCACCCCTGCTTTGCTCCGTGCATTTTGACAGTGTATGAATTGCGTTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 90 bp GTCAGAGAGATTTCCTCCACTTCCAGCTTGAGCGATGCCAACTTCTaGAACAGGTGGTGCAGAATAAGTCCATCAAACATGTCTTCCTCC +
Preference number: 5 (lower is better)
Translates to: VREISSTSSLSDANF*NRWCRISPSNMSSS
Trigger: GGAGGAAGACATGTTTGATGGACTTATTCTGCACCACCTGTTCCAGAAGTTGGCATCGCTCAAGCTGGAAGTGGAGGAAATCTCTCTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023074.9
ENSMUST00000145809.2
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp TTAAACGCAATTCATACACTGTCAAAATGCACGGAGCAAAGCAGGGGTGGGCACATCCTCAGTGTGCTCTaGGCGTCCTTGTTCACAATA +
Preference number: 5 (lower is better)
Translates to: LNAIHTLSKCTEQSRGGHILSVL*ASLFTI
Trigger: TATTGTGAACAAGGACGCCAAGAGCACACTGAGGAT...GTGCCCACCCCTGCTTTGCTCCGTGCATTTTGACAGTGTATGAATTGCGTTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp TTGTGGAGTCTGAGCAGCCACTATCTACCAAGGTATAGCCTTAGTAGACAGACTTGTAAAGGCTGGTCCTaGTGTGACTTGCATTCTGTG +
Preference number: 5 (lower is better)
Translates to: LWSLSSHYLPRYSLSRQTCKGWS*CDLHSV
Trigger: CACAGAATGCAAGTCACACAAGGACCAGCCTTTACA...AGTCTGTCTACTAAGGCTATACCTTGGTAGATAGTGGCTGCTCAGACTCCACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp AGTTATTCAGCTGTTCCTCTCTCTTTTCAGAAGACACCAAGTCTCACGGGACAGTGTAAAGGCTGGTCCTaGTGTGACTTGCATTCTGTG +
Preference number: 5 (lower is better)
Translates to: SYSAVPLSFQKTPSLTGQCKGWS*CDLHSV
Trigger: CACAGAATGCAAGTCACACAAGGACCAGCCTTTACA...CTGTCCCGTGAGACTTGGTGTCTTCTGAAAAGAGAGAGGAACAGCTGAATAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS-3UTR CAA 90 bp GTCTCTATGAAAGGATTACCTAAGCAGAAAGAGATAGCCGGACCCCAGCTACAAGGGTTCCTCTTGGAATaGGGTGACAGATATTTCTTC +
Preference number: 5 (lower is better)
Translates to: VSMKGLPKQKEIAGPQLQGFLLE*GDRYFF
Trigger: GAAGAAATATCTGTCACCCAATTCCAAGAGGAACCC...TTGTAGCTGGGGTCCGGCTATCTCTTTCTGCTTAGGTAATCCTTTCATAGAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 72 bp CGTTGTCTGGGAGGGGCAGGTCCGGCTGGAAGCGTTTaGCCAGGGCCACCAGGAGATGCAAGGTGGCCAGCA +
Preference number: 6 (lower is better)
Translates to: RCLGGAGPAGSV*PGPPGDARWPA
Trigger: TGCTGGCCACCTTGCATCTCCTGGTGGCCCTGGCCAAACGCTTCCAGCCGGACCTGCCCCTCCCAGACAACG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CAA 72 bp ACGTTGTCTGGGAGGGGCAGGTCCGGCTGGAAGCGTTaGGCCAGGGCCACCAGGAGATGCAAGGTGGCCAGC +
Preference number: 6 (lower is better)
Translates to: TLSGRGRSGWKR*ARATRRCKVAS
Trigger: GCTGGCCACCTTGCATCTCCTGGTGGCCCTGGCCAAACGCTTCCAGCCGGACCTGCCCCTCCCAGACAACGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CAA 90 bp TCCACCTGGACGTTGTCTGGGAGGGGCAGGTCCGGCTGGAAGCGTTaGGCCAGGGCCACCAGGAGATGCAAGGTGGCCAGCAGGTCCTTG +
Preference number: 6 (lower is better)
Translates to: STWTLSGRGRSGWKR*ARATRRCKVASRSL
Trigger: CAAGGACCTGCTGGCCACCTTGCATCTCCTGGTGGCCCTGGCCAAACGCTTCCAGCCGGACCTGCCCCTCCCAGACAACGTCCAGGTGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 72 bp TCCACCTGGACGTTGTCTGGGAGGGGCAGGTCCGGCTaGAAGCGTTTGGCCAGGGCCACCAGGAGATGCAAG +
Preference number: 6 (lower is better)
Translates to: STWTLSGRGRSG*KRLARATRRCK
Trigger: CTTGCATCTCCTGGTGGCCCTGGCCAAACGCTTCCAGCCGGACCTGCCCCTCCCAGACAACGTCCAGGTGGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CAA 90 bp AGGCCGGTCTTGGTGCTCTCAATGTGGATGACTTCCACCTGGACGTaGTCTGGGAGGGGCAGGTCCGGCTGGAAGCGTTTGGCCAGGGCC +
Preference number: 6 (lower is better)
Translates to: RPVLVLSMWMTSTWT*SGRGRSGWKRLARA
Trigger: GGCCCTGGCCAAACGCTTCCAGCCGGACCTGCCCCTCCCAGACAACGTCCAGGTGGAAGTCATCCACATTGAGAGCACCAAGACCGGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS GCA 72 bp TTCTGGTTGACGGCCTCCAGGATGACCCCCAGCTTGTaGCTCTGGCTGGCCGAGGTCAGAGAGATTTCCTCC +
Preference number: 6 (lower is better)
Translates to: FWLTASRMTPSL*LWLAEVREISS
Trigger: GGAGGAAATCTCTCTGACCTCGGCCAGCCAGAGGCACAAGCTGGGGGTCATCCTGGAGGCCGTCAACCAGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 72 bp GCTCTCAATGTGGATGACTTCCACCTGGACGTTGTCTaGGAGGGGCAGGTCCGGCTGGAAGCGTTTGGCCAG +
Preference number: 6 (lower is better)
Translates to: ALNVDDFHLDVV*EGQVRLEAFGQ
Trigger: CTGGCCAAACGCTTCCAGCCGGACCTGCCCCTCCCAGACAACGTCCAGGTGGAAGTCATCCACATTGAGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 72 bp CCGGTCTTGGTGCTCTCAATGTGGATGACTTCCACCTaGACGTTGTCTGGGAGGGGCAGGTCCGGCTGGAAG +
Preference number: 6 (lower is better)
Translates to: PVLVLSMWMTST*TLSGRGRSGWK
Trigger: CTTCCAGCCGGACCTGCCCCTCCCAGACAACGTCCAGGTGGAAGTCATCCACATTGAGAGCACCAAGACCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CAA 72 bp AGGGCCACCAGGAGATGCAAGGTGGCCAGCAGGTCCTaGTTGAAGATGGTCTCCACGCTCCACTTGGCCTGC +
Preference number: 6 (lower is better)
Translates to: RATRRCKVASRS*LKMVSTLHLAC
Trigger: GCAGGCCAAGTGGAGCGTGGAGACCATCTTCAACAAGGACCTGCTGGCCACCTTGCATCTCCTGGTGGCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CAA 90 bp TCCACCTGTAGGTTCTGGTTGACGGCCTCCAGGATGACCCCCAGCTaGTGCCTCTGGCTGGCCGAGGTCAGAGAGATTTCCTCCACTTCC +
Preference number: 6 (lower is better)
Translates to: STCRFWLTASRMTPS*CLWLAEVREISSTS
Trigger: GGAAGTGGAGGAAATCTCTCTGACCTCGGCCAGCCAGAGGCACAAGCTGGGGGTCATCCTGGAGGCCGTCAACCAGAACCTACAGGTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS TCA 72 bp CCGACTTCAGGCCGGTCTTGGTGCTCTCAATGTGGATaGCTTCCACCTGGACGTTGTCTGGGAGGGGCAGGT +
Preference number: 6 (lower is better)
Translates to: PTSGRSWCSQCG*LPPGRCLGGAG
Trigger: ACCTGCCCCTCCCAGACAACGTCCAGGTGGAAGTCATCCACATTGAGAGCACCAAGACCGGCCTGAAGTCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS TCA 72 bp CCAGACTCTCCCAGATGTAGATGGGGTGGACCAGGCTaGAGGCCAAAGCCACCCAGACGTGTTCCCCAATCC +
Preference number: 6 (lower is better)
Translates to: PDSPRCRWGGPG*RPKPPRRVPQS
Trigger: GGATTGGGGAACACGTCTGGGTGGCTTTGGCCTTCAGCCTGGTCCACCCCATCTACATCTGGGAGAGTCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125928.8
ENSMUST00000163667.2
CDS CCA 72 bp CTCCACTTGGCCTGCTTCTCTTCCACCTGTAGGTTCTaGTTGACGGCCTCCAGGATGACCCCCAGCTTGTGC +
Preference number: 6 (lower is better)
Translates to: LHLACFSSTCRF*LTASRMTPSLC
Trigger: GCACAAGCTGGGGGTCATCCTGGAGGCCGTCAACCAGAACCTACAGGTGGAAGAGAAGCAGGCCAAGTGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CAA 72 bp CACTTGGCCTGCTTCTCTTCCACCTGTAGGTTCTGGTaGACGGCCTCCAGGATGACCCCCAGCTTGTGCCTC +
Preference number: 6 (lower is better)
Translates to: HLACFSSTCRFW*TASRMTPSLCL
Trigger: GAGGCACAAGCTGGGGGTCATCCTGGAGGCCGTCAACCAGAACCTACAGGTGGAAGAGAAGCAGGCCAAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CAA 72 bp GCCACCAGGAGATGCAAGGTGGCCAGCAGGTCCTTGTaGAAGATGGTCTCCACGCTCCACTTGGCCTGCTTC +
Preference number: 6 (lower is better)
Translates to: ATRRCKVASRSL*KMVSTLHLACF
Trigger: GAAGCAGGCCAAGTGGAGCGTGGAGACCATCTTCAACAAGGACCTGCTGGCCACCTTGCATCTCCTGGTGGC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CAA 90 bp AAGGTGGCCAGCAGGTCCTTGTTGAAGATGGTCTCCACGCTCCACTaGGCCTGCTTCTCTTCCACCTGTAGGTTCTGGTTGACGGCCTCC +
Preference number: 6 (lower is better)
Translates to: KVASRSLLKMVSTLH*ACFSSTCRFWLTAS
Trigger: GGAGGCCGTCAACCAGAACCTACAGGTGGAAGAGAAGCAGGCCAAGTGGAGCGTGGAGACCATCTTCAACAAGGACCTGCTGGCCACCTT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS TCA 72 bp CCACCAGGAGATGCAAGGTGGCCAGCAGGTCCTTGTTaGAGATGGTCTCCACGCTCCACTTGGCCTGCTTCT +
Preference number: 6 (lower is better)
Translates to: PPGDARWPAGPC*RWSPRSTWPAS
Trigger: AGAAGCAGGCCAAGTGGAGCGTGGAGACCATCTTCAACAAGGACCTGCTGGCCACCTTGCATCTCCTGGTGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS TCA 72 bp TCTGCACAGACAGGCCCAGGCGCTCTAGCTTCTGGTTaGCAAAGCTCACAATGGCCTCTTGGACGGCGTGCA +
Preference number: 6 (lower is better)
Translates to: SAQTGPGALASG*QSSQWPLGRRA
Trigger: TGCACGCCGTCCAAGAGGCCATTGTGAGCTTTGTCAACCAGAAGCTAGAGCGCCTGGGCCTGTCTGTGCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 72 bp TTGTCCGACTTCAGGCCGGTCTTGGTGCTCTCAATGTaGATGACTTCCACCTGGACGTTGTCTGGGAGGGGC +
Preference number: 6 (lower is better)
Translates to: LSDFRPVLVLSM*MTSTWTLSGRG
Trigger: GCCCCTCCCAGACAACGTCCAGGTGGAAGTCATCCACATTGAGAGCACCAAGACCGGCCTGAAGTCGGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 72 bp AGACTCTGCACAGACAGGCCCAGGCGCTCTAGCTTCTaGTTGACAAAGCTCACAATGGCCTCTTGGACGGCG +
Preference number: 6 (lower is better)
Translates to: RLCTDRPRRSSF*LTKLTMASWTA
Trigger: CGCCGTCCAAGAGGCCATTGTGAGCTTTGTCAACCAGAAGCTAGAGCGCCTGGGCCTGTCTGTGCAGAGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CAA 72 bp TTGGTGCTCTCAATGTGGATGACTTCCACCTGGACGTaGTCTGGGAGGGGCAGGTCCGGCTGGAAGCGTTTG +
Preference number: 6 (lower is better)
Translates to: LVLSMWMTSTWT*SGRGRSGWKRL
Trigger: CAAACGCTTCCAGCCGGACCTGCCCCTCCCAGACAACGTCCAGGTGGAAGTCATCCACATTGAGAGCACCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CAA 72 bp AGCTGCTCCACCTGCTTGTCCGACTTCAGGCCGGTCTaGGTGCTCTCAATGTGGATGACTTCCACCTGGACG +
Preference number: 6 (lower is better)
Translates to: SCSTCLSDFRPV*VLSMWMTSTWT
Trigger: CGTCCAGGTGGAAGTCATCCACATTGAGAGCACCAAGACCGGCCTGAAGTCGGACAAGCAGGTGGAGCAGCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CAA 90 bp CATTCTGTGAGCTGCTCCACCTGCTTGTCCGACTTCAGGCCGGTCTaGGTGCTCTCAATGTGGATGACTTCCACCTGGACGTTGTCTGGG +
Preference number: 6 (lower is better)
Translates to: HSVSCSTCLSDFRPV*VLSMWMTSTWTLSG
Trigger: CCCAGACAACGTCCAGGTGGAAGTCATCCACATTGAGAGCACCAAGACCGGCCTGAAGTCGGACAAGCAGGTGGAGCAGCTCACAGAATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS TCA 72 bp CCTGTAAAGGCTGGTCCTTGTGTGACTTGCATTCTGTaGGCTGCTCCACCTGCTTGTCCGACTTCAGGCCGG +
Preference number: 6 (lower is better)
Translates to: PVKAGPCVTCIL*AAPPACPTSGR
Trigger: CCGGCCTGAAGTCGGACAAGCAGGTGGAGCAGCTCACAGAATGCAAGTCACACAAGGACCAGCCTTTACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS TCA 72 bp TCTAACTCCATCTTCTTCCTTGCCTTCCCAGTGGGGTaGAGTGGCCGTCCATCCATCCCTTCAGGGTCCCTG +
Preference number: 6 (lower is better)
Translates to: SNSIFFLAFPVG*SGRPSIPSGSL
Trigger: CAGGGACCCTGAAGGGATGGATGGACGGCCACTTCACCCCACTGGGAAGGCAAGGAAGAAGATGGAGTTAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125928.8
ENSMUST00000163667.2
CDS CAA 90 bp GGCTGGTCCTTGTGTGACTTGCATTCTGTGAGCTGCTCCACCTGCTaGTCCGACTTCAGGCCGGTCTTGGTGCTCTCAATGTGGATGACT +
Preference number: 6 (lower is better)
Translates to: GWSLCDLHSVSCSTC*SDFRPVLVLSMWMT
Trigger: AGTCATCCACATTGAGAGCACCAAGACCGGCCTGAAGTCGGACAAGCAGGTGGAGCAGCTCACAGAATGCAAGTCACACAAGGACCAGCC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS GCA 72 bp TCAAACATGTCTTCCTCCAGGCTGCGGACCACGATGTaGTCCGGGAGGAGTGTGGTGTTGATCCATTCCATC +
Preference number: 6 (lower is better)
Translates to: SNMSSSRLRTTM*SGRSVVLIHSI
Trigger: GATGGAATGGATCAACACCACACTCCTCCCGGAGCACATCGTGGTCCGCAGCCTGGAGGAAGACATGTTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS GCA 72 bp TCCTTGTTGAAGATGGTCTCCACGCTCCACTTGGCCTaGTTCTCTTCCACCTGTAGGTTCTGGTTGACGGCC +
Preference number: 6 (lower is better)
Translates to: SLLKMVSTLHLA*FSSTCRFWLTA
Trigger: GGCCGTCAACCAGAACCTACAGGTGGAAGAGAAGCAGGCCAAGTGGAGCGTGGAGACCATCTTCAACAAGGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS GCA 72 bp TCCTTGTGTGACTTGCATTCTGTGAGCTGCTCCACCTaGTTGTCCGACTTCAGGCCGGTCTTGGTGCTCTCA +
Preference number: 6 (lower is better)
Translates to: SLCDLHSVSCST*LSDFRPVLVLS
Trigger: TGAGAGCACCAAGACCGGCCTGAAGTCGGACAAGCAGGTGGAGCAGCTCACAGAATGCAAGTCACACAAGGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS GCA 72 bp AAAGGCTGGTCCTTGTGTGACTTGCATTCTGTGAGCTaGTCCACCTGCTTGTCCGACTTCAGGCCGGTCTTG +
Preference number: 6 (lower is better)
Translates to: KGWSLCDLHSVS*STCLSDFRPVL
Trigger: CAAGACCGGCCTGAAGTCGGACAAGCAGGTGGAGCAGCTCACAGAATGCAAGTCACACAAGGACCAGCCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 72 bp GGAACTCTAACTCCATCTTCTTCCTTGCCTTCCCAGTaGGGTGAAGTGGCCGTCCATCCATCCCTTCAGGGT +
Preference number: 6 (lower is better)
Translates to: GTLTPSSSLPSQ*GEVAVHPSLQG
Trigger: ACCCTGAAGGGATGGATGGACGGCCACTTCACCCCACTGGGAAGGCAAGGAAGAAGATGGAGTTAGAGTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125928.8
ENSMUST00000163667.2
CDS CAA 72 bp CTGGCCGAGGTCAGAGAGATTTCCTCCACTTCCAGCTaGAGCGATGCCAACTTCTGGAACAGGTGGTGCAGA +
Preference number: 6 (lower is better)
Translates to: LAEVREISSTSS*SDANFWNRWCR
Trigger: TCTGCACCACCTGTTCCAGAAGTTGGCATCGCTCAAGCTGGAAGTGGAGGAAATCTCTCTGACCTCGGCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023074.9
ENSMUST00000145809.2
ENSMUST00000163667.2
CDS CAA 90 bp GGAGCTGCAACAGGTCATAGAGGAACTCTAACTCCATCTTCTTCCTaGCCTTCCCAGTGGGGTGAAGTGGCCGTCCATCCATCCCTTCAG +
Preference number: 6 (lower is better)
Translates to: GAATGHRGTLTPSSS*PSQWGEVAVHPSLQ
Trigger: CTGAAGGGATGGATGGACGGCCACTTCACCCCACTGGGAAGGCAAGGAAGAAGATGGAGTTAGAGTTCCTCTATGACCTGTTGCAGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125928.8
ENSMUST00000163667.2
CDS TCA 72 bp TGCGGACCACGATGTGCTCCGGGAGGAGTGTGGTGTTaGTCCATTCCATCAGCACCTTCTGCAGTTCTTCAA +
Preference number: 6 (lower is better)
Translates to: CGPRCAPGGVWC*SIPSAPSAVLQ
Trigger: TTGAAGAACTGCAGAAGGTGCTGATGGAATGGATCAACACCACACTCCTCCCGGAGCACATCGTGGTCCGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023074.9
ENSMUST00000125928.8
ENSMUST00000163667.2
CDS CCA 72 bp ATTTCTTCTTTCCTCCTCGTGGAAGCTCTTCCTCCGTaGGCTGAGCTACCTCCTTTGGGAGCTGCAACAGGT +
Preference number: 6 (lower is better)
Translates to: ISSFLLVEALPP*AELPPLGAATG
Trigger: ACCTGTTGCAGCTCCCAAAGGAGGTAGCTCAGCCCACGGAGGAAGAGCTTCCACGAGGAGGAAAGAAGAAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023074.9
ENSMUST00000125928.8
ENSMUST00000163667.2
CDS CAA 72 bp GTGGAAGCTCTTCCTCCGTGGGCTGAGCTACCTCCTTaGGGAGCTGCAACAGGTCATAGAGGAACTCTAACT +
Preference number: 6 (lower is better)
Translates to: VEALPPWAELPP*GAATGHRGTLT
Trigger: AGTTAGAGTTCCTCTATGACCTGTTGCAGCTCCCAAAGGAGGTAGCTCAGCCCACGGAGGAAGAGCTTCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023074.9
ENSMUST00000125928.8
ENSMUST00000163667.2
CDS CAA 72 bp TTGTGTGACTTGCATTCTGTGAGCTGCTCCACCTGCTaGTCCGACTTCAGGCCGGTCTTGGTGCTCTCAATG +
Preference number: 6 (lower is better)
Translates to: LCDLHSVSCSTC*SDFRPVLVLSM
Trigger: CATTGAGAGCACCAAGACCGGCCTGAAGTCGGACAAGCAGGTGGAGCAGCTCACAGAATGCAAGTCACACAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CAA 72 bp TCAAAGGCGTCCTGTAAAGGCTGGTCCTTGTGTGACTaGCATTCTGTGAGCTGCTCCACCTGCTTGTCCGAC +
Preference number: 6 (lower is better)
Translates to: SKASCKGWSLCD*HSVSCSTCLSD
Trigger: GTCGGACAAGCAGGTGGAGCAGCTCACAGAATGCAAGTCACACAAGGACCAGCCTTTACAGGACGCCTTTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CAA 72 bp CCTTCATCCTTGAGCAGATCCAGGGCTAGGGTGACATaGTGCAGCATTTCTGTGGGAGAGCTGGGAGTGAGA +
Preference number: 6 (lower is better)
Translates to: PSSLSRSRARVT*CSISVGELGVR
Trigger: TCTCACTCCCAGCTCTCCCACAGAAATGCTGCACAATGTCACCCTAGCCCTGGATCTGCTCAAGGATGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CAA 90 bp TTCCTCCTCGTGGAAGCTCTTCCTCCGTGGGCTGAGCTACCTCCTTaGGGAGCTGCAACAGGTCATAGAGGAACTCTAACTCCATCTTCT +
Preference number: 6 (lower is better)
Translates to: FLLVEALPPWAELPP*GAATGHRGTLTPSS
Trigger: AGAAGATGGAGTTAGAGTTCCTCTATGACCTGTTGCAGCTCCCAAAGGAGGTAGCTCAGCCCACGGAGGAAGAGCTTCCACGAGGAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125928.8
ENSMUST00000163667.2
CDS CAA 90 bp AATAATTCATCAAAGGCGTCCTGTAAAGGCTGGTCCTTGTGTGACTaGCATTCTGTGAGCTGCTCCACCTGCTTGTCCGACTTCAGGCCG +
Preference number: 6 (lower is better)
Translates to: NNSSKASCKGWSLCD*HSVSCSTCLSDFRP
Trigger: CGGCCTGAAGTCGGACAAGCAGGTGGAGCAGCTCACAGAATGCAAGTCACACAAGGACCAGCCTTTACAGGACGCCTTTGATGAATTATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS GCA 72 bp GGTCAGAGAGATTTCCTCCACTTCCAGCTTGAGCGATaGCAACTTCTGGAACAGGTGGTGCAGAATAAGTCC +
Preference number: 6 (lower is better)
Translates to: GQRDFLHFQLER*QLLEQVVQNKS
Trigger: GGACTTATTCTGCACCACCTGTTCCAGAAGTTGGCATCGCTCAAGCTGGAAGTGGAGGAAATCTCTCTGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023074.9
ENSMUST00000145809.2
ENSMUST00000163667.2
CDS CAA 90 bp GCCAGCTTAAATAATTCATCAAAGGCGTCCTGTAAAGGCTGGTCCTaGTGTGACTTGCATTCTGTGAGCTGCTCCACCTGCTTGTCCGAC +
Preference number: 6 (lower is better)
Translates to: ASLNNSSKASCKGWS*CDLHSVSCSTCLSD
Trigger: GTCGGACAAGCAGGTGGAGCAGCTCACAGAATGCAAGTCACACAAGGACCAGCCTTTACAGGACGCCTTTGATGAATTATTTAAGCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS GCA 72 bp TGGTTGACAAAGCTCACAATGGCCTCTTGGACGGCGTaGACTTTCTCCGGAGCCAGCTTAAATAATTCATCA +
Preference number: 6 (lower is better)
Translates to: WLTKLTMASWTA*TFSGASLNNSS
Trigger: TGATGAATTATTTAAGCTGGCTCCGGAGAAAGTGCACGCCGTCCAAGAGGCCATTGTGAGCTTTGTCAACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2
CDS CCA 72 bp ACTTCCAGCTTGAGCGATGCCAACTTCTGGAACAGGTaGTGCAGAATAAGTCCATCAAACATGTCTTCCTCC +
Preference number: 6 (lower is better)
Translates to: TSSLSDANFWNR*CRISPSNMSSS
Trigger: GGAGGAAGACATGTTTGATGGACTTATTCTGCACCACCTGTTCCAGAAGTTGGCATCGCTCAAGCTGGAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023074.9
ENSMUST00000145809.2
ENSMUST00000163667.2
CDS CAA 72 bp AATAATTCATCAAAGGCGTCCTGTAAAGGCTGGTCCTaGTGTGACTTGCATTCTGTGAGCTGCTCCACCTGC +
Preference number: 6 (lower is better)
Translates to: NNSSKASCKGWS*CDLHSVSCSTC
Trigger: GCAGGTGGAGCAGCTCACAGAATGCAAGTCACACAAGGACCAGCCTTTACAGGACGCCTTTGATGAATTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023074.9
ENSMUST00000163667.2