Pregenerated sensors for PARPBP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035365Ensembl transcript IDs: ENSMUST00000048518.16, ENSMUST00000164121.8, ENSMUST00000164803.2, ENSMUST00000168163.8
Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTTACGCTTTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTaGAGTGTGGGTGAGGACCTTCTGGGCACCCTCTTTGATTTGTTG | + |
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Preference number: 1 (lower is better) Translates to: PYALRSRCPPRDTGH*SVGEDLLGTLFDLL Trigger: CAACAAATCAAAGAGGGTGCCCAGAAGGTCCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAGCGTAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR CCA 90 bp | CTTTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTGAAGTGTaGGTGAGGACCTTCTGGGCACCCTCTTTGATTTGTTGGAAGCTG | + |
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Preference number: 1 (lower is better) Translates to: LYGVVVLPGIQGTEV*VRTFWAPSLICWKL Trigger: CAGCTTCCAACAAATCAAAGAGGGTGCCCAGAAGGTCCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR TCA 90 bp | GGTCTGGGTATAAAACTCACACAAGTCACTAAACAATGCTACATGTaGACTGTTCGTATCACACGAATATTGAGAAACAAAGGTGAAAGC | + |
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Preference number: 1 (lower is better) Translates to: GLGIKLTQVTKQCYM*TVRITRILRNKGES Trigger: GCTTTCACCTTTGTTTCTCAATATTCGTGTGATACGAACAGTTCACATGTAGCATTGTTTAGTGACTTGTGTGAGTTTTATACCCAGACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR-3UTR TCA 90 bp | CTTTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTGAAGTGTGGGTGAGGTCTGGGCACCCTCTTTaGTTTGTTGGAAGCTGGGCT | + |
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Preference number: 2 (lower is better) Translates to: LYGVVVLPGIQGTEVWVRSGHPL*FVGSWA Trigger: AGCCCAGCTTCCAACAAATCAAAGAGGGTGCCCAGA...CCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR-3UTR CCA 90 bp | CTGGACCTCAAGAACCAGAGCTCTTCGCCCCTCCTTACGCTTTACGGAGTCGTTTGGGTGAGGACCTTCTaGGCACCCTCTTTGATTTGT | + |
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Preference number: 2 (lower is better) Translates to: LDLKNQSSSPLLTLYGVVWVRTF*APSLIC Trigger: ACAAATCAAAGAGGGTGCCCAGAAGGTCCTCACCCA...AACGACTCCGTAAAGCGTAAGGAGGGGCGAAGAGCTCTGGTTCTTGAGGTCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR-3UTR TCA 90 bp | GGGCTAAATAAATGTCTTTATCCTTCATTCCACCCAGGTCTGGGTATAAAACTCGTATCACACGAATATTaGGAAACAAAGGTGAAAGCG | + |
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Preference number: 2 (lower is better) Translates to: GLNKCLYPSFHPGLGIKLVSHEY*ETKVKA Trigger: CGCTTTCACCTTTGTTTCTCAATATTCGTGTGATAC...GAGTTTTATACCCAGACCTGGGTGGAATGAAGGATAAAGACATTTATTTAGCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR CAA 90 bp | ATTTCTCCATCTTATCCAAAATCTTTGTATCTTGTATCTCACATGTaGGGAGGTGAACGCAGTGTAGAGCTTCTTAGAATTGATCAGCAA | + |
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Preference number: 2 (lower is better) Translates to: ISPSYPKSLYLVSHM*GGERSVELLRIDQQ Trigger: TTGCTGATCAATTCTAAGAAGCTCTACACTGCGTTCACCTCCCAACATGTGAGATACAAGATACAAAGATTTTGGATAAGATGGAGAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR CAA 90 bp | AAAATTTCATATAAACCAGGTATTTCTCCATCTTATCCAAAATCTTaGTATCTTGTATCTCACATGTTGGGAGGTGAACGCAGTGTAGAG | + |
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Preference number: 2 (lower is better) Translates to: KISYKPGISPSYPKS*YLVSHMLGGERSVE Trigger: CTCTACACTGCGTTCACCTCCCAACATGTGAGATACAAGATACAAAGATTTTGGATAAGATGGAGAAATACCTGGTTTATATGAAATTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR TCA 72 bp | TTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTaGAGTGTGGGTGAGGACCTTCTGGGCACCCTCTTT | + |
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Preference number: 3 (lower is better) Translates to: LRSRCPPRDTGH*SVGEDLLGTLF Trigger: AAAGAGGGTGCCCAGAAGGTCCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR CCA 72 bp | GTCGTTGTCCTCCCAGGGATACAGGGCACTGAAGTGTaGGTGAGGACCTTCTGGGCACCCTCTTTGATTTGT | + |
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Preference number: 3 (lower is better) Translates to: VVVLPGIQGTEV*VRTFWAPSLIC Trigger: ACAAATCAAAGAGGGTGCCCAGAAGGTCCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR-3UTR CAA 90 bp | CTGGACCTCAAGAACCAGAGCTCTTCGCCCCTCCTTACGCTTTACGGAGTCGTTTTCTGGGCACCCTCTTaGATTTGTTGGAAGCTGGGC | + |
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Preference number: 3 (lower is better) Translates to: LDLKNQSSSPLLTLYGVVFWAPS*ICWKLG Trigger: GCCCAGCTTCCAACAAATCAAAGAGGGTGCCCAGAA...AACGACTCCGTAAAGCGTAAGGAGGGGCGAAGAGCTCTGGTTCTTGAGGTCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR-3UTR CAA 90 bp | CTGGACCTCAAGAACCAGAGCTCTTCGCCCCTCCTTACGCTTTACGGAGTCGTTGGCACCCTCTTTGATTaGTTGGAAGCTGGGCTAAAT | + |
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Preference number: 3 (lower is better) Translates to: LDLKNQSSSPLLTLYGVVGTLFD*LEAGLN Trigger: ATTTAGCCCAGCTTCCAACAAATCAAAGAGGGTGCC...AACGACTCCGTAAAGCGTAAGGAGGGGCGAAGAGCTCTGGTTCTTGAGGTCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR CCA 72 bp | ACATGGGACATCTTGGGAAACGATGTAATAACCCACTaGACCTCAAGAACCAGAGCTCTTCGCCCCTCCTTA | + |
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Preference number: 3 (lower is better) Translates to: TWDILGNDVITH*TSRTRALRPSL Trigger: TAAGGAGGGGCGAAGAGCTCTGGTTCTTGAGGTCCAGTGGGTTATTACATCGTTTCCCAAGATGTCCCATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR-3UTR CAA 90 bp | TTTGATTTGTTGGAAGCTGGGCTAAATAAATGTCTTTATCCTTCATTCCACCCACGTATCACACGAATATaGAGAAACAAAGGTGAAAGC | + |
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Preference number: 3 (lower is better) Translates to: FDLLEAGLNKCLYPSFHPRITRI*RNKGES Trigger: GCTTTCACCTTTGTTTCTCAATATTCGTGTGATACG...TGGGTGGAATGAAGGATAAAGACATTTATTTAGCCCAGCTTCCAACAAATCAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR CAA 72 bp | AGAGCTCTTCGCCCCTCCTTACGCTTTACGGAGTCGTaGTCCTCCCAGGGATACAGGGCACTGAAGTGTGGG | + |
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Preference number: 4 (lower is better) Translates to: RALRPSLRFTES*SSQGYRALKCG Trigger: CCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAGCGTAAGGAGGGGCGAAGAGCTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR TCA 90 bp | CTTTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTGAAGTGTGGGTGAGGGGTGACTCTGGCATGTaGGGATTAGCTTCGTCACTG | + |
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Preference number: 4 (lower is better) Translates to: LYGVVVLPGIQGTEVWVRGDSGM*GLASSL Trigger: CAGTGACGAAGCTAATCCTCACATGCCAGAGTCACC...CCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR TCA 90 bp | CTTTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTGAAGTGTGGGTGAGGACCAGCTTTACTGTGTaGGCCACTGGGCACTTTAGG | + |
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Preference number: 4 (lower is better) Translates to: LYGVVVLPGIQGTEVWVRTSFTV*ATGHFR Trigger: CCTAAAGTGCCCAGTGGCTCACACAGTAAAGCTGGT...CCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR TCA 90 bp | CTTTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTGAAGTGTGGGTGAGGCTCGATCAGGGATGTTaGGAATGGAAGCCAAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: LYGVVVLPGIQGTEVWVRLDQGC*EWKPKP Trigger: TGGCTTTGGCTTCCATTCTCAACATCCCTGATCGAG...CCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CCA 90 bp | CTTTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTGAAGTGTGGGTGAGGACCTGCTCGTCATTCTaGCTGCATTTTACTGGTGAC | + |
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Preference number: 4 (lower is better) Translates to: LYGVVVLPGIQGTEVWVRTCSSF*LHFTGD Trigger: GTCACCAGTAAAATGCAGCCAGAATGACGAGCAGGT...CCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CCA 90 bp | CTTTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTGAAGTGTGGGTGAGGTTCCATCTGCCCACGTaGGCATTTTCAGAACTTGCT | + |
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Preference number: 4 (lower is better) Translates to: LYGVVVLPGIQGTEVWVRFHLPT*AFSELA Trigger: AGCAAGTTCTGAAAATGCCCACGTGGGCAGATGGAA...CCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR TCA 90 bp | CTGGACCTCAAGAACCAGAGCTCTTCGCCCCTCCTTACGCTTTACGGAGTCGTTTGCTTTTCCAACAGATaGCTGTGCTCCCTCAGAAAC | + |
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Preference number: 4 (lower is better) Translates to: LDLKNQSSSPLLTLYGVVCFSNR*LCSLRN Trigger: GTTTCTGAGGGAGCACAGTCATCTGTTGGAAAAGCA...AACGACTCCGTAAAGCGTAAGGAGGGGCGAAGAGCTCTGGTTCTTGAGGTCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CCA 90 bp | CTTTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTGAAGTGTGGGTGAGGGAGTGTGAGAACAGATaGTCCACTATGAGGAACTGT | + |
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Preference number: 4 (lower is better) Translates to: LYGVVVLPGIQGTEVWVRECENR*STMRNC Trigger: ACAGTTCCTCATAGTGGACCATCTGTTCTCACACTC...CCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR GCA 90 bp | CTTTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTGAAGTGTGGGTGAGGTTTTCACAGCATCTCTaGCACAGTAGGCAGTATCAT | + |
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Preference number: 4 (lower is better) Translates to: LYGVVVLPGIQGTEVWVRFSQHL*HSRQYH Trigger: ATGATACTGCCTACTGTGGCAGAGATGCTGTGAAAA...CCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR GCA 90 bp | CTTTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTGAAGTGTGGGTGAGGCATGCCATTTATTCTTaGTCATTATGCAGTCATCTT | + |
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Preference number: 4 (lower is better) Translates to: LYGVVVLPGIQGTEVWVRHAIYS*SLCSHL Trigger: AAGATGACTGCATAATGAGCAAGAATAAATGGCATG...CCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR GCA 90 bp | CTGGACCTCAAGAACCAGAGCTCTTCGCCCCTCCTTACGCTTTACGGAGTCGTTGGCATTTTCAGAACTTaGTTCAATTCTTGCTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: LDLKNQSSSPLLTLYGVVGIFRT*FNSCFS Trigger: GGAAAAGCAAGAATTGAAGCAAGTTCTGAAAATGCC...AACGACTCCGTAAAGCGTAAGGAGGGGCGAAGAGCTCTGGTTCTTGAGGTCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CCA 90 bp | CTGGACCTCAAGAACCAGAGCTCTTCGCCCCTCCTTACGCTTTACGGAGTCGTTTGCAAGGCTTGGATTTaGTATCTTTCCAAGAATTTC | + |
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Preference number: 4 (lower is better) Translates to: LDLKNQSSSPLLTLYGVVCKAWI*YLSKNF Trigger: GAAATTCTTGGAAAGATACCAAATCCAAGCCTTGCA...AACGACTCCGTAAAGCGTAAGGAGGGGCGAAGAGCTCTGGTTCTTGAGGTCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR TCA 90 bp | CCTTCATTCCACCCAGGTCTGGGTATAAAACTCACACAAGTCACTAAACAATGCCACTGCTGTGGCCTTTaGTCAGCTGCATCTTTATCG | + |
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Preference number: 4 (lower is better) Translates to: PSFHPGLGIKLTQVTKQCHCCGL*SAASLS Trigger: CGATAAAGATGCAGCTGATCAAAGGCCACAGCAGTG...GCATTGTTTAGTGACTTGTGTGAGTTTTATACCCAGACCTGGGTGGAATGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR GCA 90 bp | TTTGATTTGTTGGAAGCTGGGCTAAATAAATGTCTTTATCCTTCATTCCACCCATCTGCCATGGACAGCTaGAGGGCCAGGAGCATGGAG | + |
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Preference number: 4 (lower is better) Translates to: FDLLEAGLNKCLYPSFHPSAMDS*RARSME Trigger: CTCCATGCTCCTGGCCCTGCAGCTGTCCATGGCAGA...TGGGTGGAATGAAGGATAAAGACATTTATTTAGCCCAGCTTCCAACAAATCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR CAA 72 bp | GTGGGTGAGGACCTTCTGGGCACCCTCTTTGATTTGTaGGAAGCTGGGCTAAATAAATGTCTTTATCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: VGEDLLGTLFDL*EAGLNKCLYPS Trigger: TGAAGGATAAAGACATTTATTTAGCCCAGCTTCCAACAAATCAAAGAGGGTGCCCAGAAGGTCCTCACCCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR CAA 72 bp | AGTGTGGGTGAGGACCTTCTGGGCACCCTCTTTGATTaGTTGGAAGCTGGGCTAAATAAATGTCTTTATCCT | + |
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Preference number: 4 (lower is better) Translates to: SVGEDLLGTLFD*LEAGLNKCLYP Trigger: AGGATAAAGACATTTATTTAGCCCAGCTTCCAACAAATCAAAGAGGGTGCCCAGAAGGTCCTCACCCACACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR GCA 90 bp | GGGCTAAATAAATGTCTTTATCCTTCATTCCACCCAGGTCTGGGTATAAAACTCCTGTTTGTTGTTTTCTaGCATGGACAGCTGCAGGGC | + |
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Preference number: 4 (lower is better) Translates to: GLNKCLYPSFHPGLGIKLLFVVF*HGQLQG Trigger: GCCCTGCAGCTGTCCATGGCAGAAAACAACAAACAG...GAGTTTTATACCCAGACCTGGGTGGAATGAAGGATAAAGACATTTATTTAGCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR TCA 90 bp | GGGCTAAATAAATGTCTTTATCCTTCATTCCACCCAGGTCTGGGTATAAAACTCACATCATCTTCCAAGTaGAGAGCAGACAAGGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: GLNKCLYPSFHPGLGIKLTSSSK*RADKGF Trigger: AAAGCCCTTGTCTGCTCTTCACTTGGAAGATGATGT...GAGTTTTATACCCAGACCTGGGTGGAATGAAGGATAAAGACATTTATTTAGCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR TCA 90 bp | CCTTCATTCCACCCAGGTCTGGGTATAAAACTCACACAAGTCACTAAACAATGCTCTGAGAGGTTTAACTaGTGTGTTTTTCTCTTGTGT | + |
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Preference number: 4 (lower is better) Translates to: PSFHPGLGIKLTQVTKQCSERFN*CVFLLC Trigger: ACACAAGAGAAAAACACATCAGTTAAACCTCTCAGA...GCATTGTTTAGTGACTTGTGTGAGTTTTATACCCAGACCTGGGTGGAATGAAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR GCA 90 bp | TTTGATTTGTTGGAAGCTGGGCTAAATAAATGTCTTTATCCTTCATTCCACCCAGCTCGTCATTCTGGCTaGATTTTACTGGTGACTCTG | + |
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Preference number: 4 (lower is better) Translates to: FDLLEAGLNKCLYPSFHPARHSG*ILLVTL Trigger: CAGAGTCACCAGTAAAATGCAGCCAGAATGACGAGC...TGGGTGGAATGAAGGATAAAGACATTTATTTAGCCCAGCTTCCAACAAATCAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR GCA 90 bp | TTTGATTTGTTGGAAGCTGGGCTAAATAAATGTCTTTATCCTTCATTCCACCCATGGCAGGACACCTATTaGCTTTTGTTCCTTGGGCAA | + |
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Preference number: 4 (lower is better) Translates to: FDLLEAGLNKCLYPSFHPWQDTY*LLFLGQ Trigger: TTGCCCAAGGAACAAAAGGCAATAGGTGTCCTGCCA...TGGGTGGAATGAAGGATAAAGACATTTATTTAGCCCAGCTTCCAACAAATCAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CCA 90 bp | GGGCTAAATAAATGTCTTTATCCTTCATTCCACCCAGGTCTGGGTATAAAACTCTATAGCAAAAGATTTTaGCGGGACAGGACTGATGTT | + |
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Preference number: 4 (lower is better) Translates to: GLNKCLYPSFHPGLGIKLYSKRF*RDRTDV Trigger: AACATCAGTCCTGTCCCGCCAAAATCTTTTGCTATA...GAGTTTTATACCCAGACCTGGGTGGAATGAAGGATAAAGACATTTATTTAGCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR GCA 90 bp | TTTGATTTGTTGGAAGCTGGGCTAAATAAATGTCTTTATCCTTCATTCCACCCAAACAACTTCCTCTACTaGTTTATAAAAAGGCTCCCC | + |
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Preference number: 4 (lower is better) Translates to: FDLLEAGLNKCLYPSFHPNNFLY*FIKRLP Trigger: GGGGAGCCTTTTTATAAAGCAGTAGAGGAAGTTGTT...TGGGTGGAATGAAGGATAAAGACATTTATTTAGCCCAGCTTCCAACAAATCAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR GCA 90 bp | GGGCTAAATAAATGTCTTTATCCTTCATTCCACCCAGGTCTGGGTATAAAACTCTTATTTTTCTCTGTTTaGAGTGACTTATGGATTCGC | + |
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Preference number: 4 (lower is better) Translates to: GLNKCLYPSFHPGLGIKLLFFSV*SDLWIR Trigger: GCGAATCCATAAGTCACTGCAAACAGAGAAAAATAA...GAGTTTTATACCCAGACCTGGGTGGAATGAAGGATAAAGACATTTATTTAGCCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CCA 90 bp | GGGCTAAATAAATGTCTTTATCCTTCATTCCACCCAGGTCTGGGTATAAAACTCTTAATGTTCTTATGTTaGTACAGTTCATTTCCACGG | + |
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Preference number: 4 (lower is better) Translates to: GLNKCLYPSFHPGLGIKLLMFLC*YSSFPR Trigger: CCGTGGAAATGAACTGTACCAACATAAGAACATTAA...GAGTTTTATACCCAGACCTGGGTGGAATGAAGGATAAAGACATTTATTTAGCCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| 3UTR CAA 72 bp | TATAAACCAGGTATTTCTCCATCTTATCCAAAATCTTaGTATCTTGTATCTCACATGTTGGGAGGTGAACGC | + |
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Preference number: 4 (lower is better) Translates to: YKPGISPSYPKS*YLVSHMLGGER Trigger: GCGTTCACCTCCCAACATGTGAGATACAAGATACAAAGATTTTGGATAAGATGGAGAAATACCTGGTTTATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CCA 90 bp | ATTCTGCATGGTATTTATAGTCATTGTTTGTTCTCTTTCAGTGCTCAGGTGTATCTTTCATATTTTCAATaGGCAAGTTCAGTTTCTCGT | + |
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Preference number: 4 (lower is better) Translates to: ILHGIYSHCLFSFSAQVYLSYFQ*ASSVSR Trigger: ACGAGAAACTGAACTTGCCCATTGAAAATATGAAAG...ATACACCTGAGCACTGAAAGAGAACAAACAATGACTATAAATACCATGCAGAAT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CAA 90 bp | CTTTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTGAAGTGTGGGTGAGGGACTCCCTGCAAGGCTaGGATTTGGTATCTTTCCAA | + |
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Preference number: 5 (lower is better) Translates to: LYGVVVLPGIQGTEVWVRDSLQG*DLVSFQ Trigger: TTGGAAAGATACCAAATCCAAGCCTTGCAGGGAGTC...CCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CAA 90 bp | CTTTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTGAAGTGTGGGTGAGGGACACCTATTGCCTTTaGTTCCTTGGGCAAGTTTGC | + |
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Preference number: 5 (lower is better) Translates to: LYGVVVLPGIQGTEVWVRDTYCL*FLGQVC Trigger: GCAAACTTGCCCAAGGAACAAAAGGCAATAGGTGTC...CCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS GCA 90 bp | ACTTGGTCTGGCCAGGAATCAACTTGCCCCTGGCAGGACACCTATTaGCTTTTGTTCCTTGGGCAAGTTTGCCACCAGCTTTACTGTGTG | + |
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Preference number: 5 (lower is better) Translates to: TWSGQESTCPWQDTY*LLFLGQVCHQLYCV Trigger: CACACAGTAAAGCTGGTGGCAAACTTGCCCAAGGAACAAAAGGCAATAGGTGTCCTGCCAGGGGCAAGTTGATTCCTGGCCAGACCAAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS TCA 90 bp | ACCTGCTCGTCATTCTGGCTGCATTTTACTGGTGACTCTGGCATGTaGGGATTAGCTTCGTCACTGACTGCATACTCTGTGCCAGACAGA | + |
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Preference number: 5 (lower is better) Translates to: TCSSFWLHFTGDSGM*GLASSLTAYSVPDR Trigger: TCTGTCTGGCACAGAGTATGCAGTCAGTGACGAAGCTAATCCTCACATGCCAGAGTCACCAGTAAAATGCAGCCAGAATGACGAGCAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048518.16 ENSMUST00000164121.8 ENSMUST00000168163.8 |
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| CDS-3UTR CAA 90 bp | CTTTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTGAAGTGTGGGTGAGGGGGCATTTTCAGAACTaGCTTCAATTCTTGCTTTTC | + |
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Preference number: 5 (lower is better) Translates to: LYGVVVLPGIQGTEVWVRGHFQN*LQFLLF Trigger: GAAAAGCAAGAATTGAAGCAAGTTCTGAAAATGCCC...CCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CAA 90 bp | CTTTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTGAAGTGTGGGTGAGGACATGCCATTTATTCTaGCTCATTATGCAGTCATCT | + |
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Preference number: 5 (lower is better) Translates to: LYGVVVLPGIQGTEVWVRTCHLF*LIMQSS Trigger: AGATGACTGCATAATGAGCAAGAATAAATGGCATGT...CCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CAA 90 bp | CTTTACGGAGTCGTTGTCCTCCCAGGGATACAGGGCACTGAAGTGTGGGTGAGGAACTTGCTTCAATTCTaGCTTTTCCAACAGATGACT | + |
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Preference number: 5 (lower is better) Translates to: LYGVVVLPGIQGTEVWVRNLLQF*LFQQMT Trigger: AGTCATCTGTTGGAAAAGCAAGAATTGAAGCAAGTT...CCTCACCCACACTTCAGTGCCCTGTATCCCTGGGAGGACAACGACTCCGTAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS CCA 90 bp | ATCTCTGCCACAGTAGGCAGTATCATGGTTTATAGCAAAAGATTTTaGCGGGACAGGACTGATGTTGTTGGCGCTGACAGCTACACCTTC | + |
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Preference number: 5 (lower is better) Translates to: ISATVGSIMVYSKRF*RDRTDVVGADSYTF Trigger: GAAGGTGTAGCTGTCAGCGCCAACAACATCAGTCCTGTCCCGCCAAAATCTTTTGCTATAAACCATGATACTGCCTACTGTGGCAGAGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS GCA 90 bp | TCTAGCTTGTCAATGAAATTAATAAACTCCGACAGGCCTTTTACATaGGCCCACAGAGGATCTGATGGTGACGGCGCATATCCTTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: SSLSMKLINSDRPFT*AHRGSDGDGAYPFP Trigger: AGGAAAAGGATATGCGCCGTCACCATCAGATCCTCTGTGGGCGCATGTAAAAGGCCTGTCGGAGTTTATTAATTTCATTGACAAGCTAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CAA 90 bp | CCTTCATTCCACCCAGGTCTGGGTATAAAACTCACACAAGTCACTAAACAATGCTCTCCTCTGTGCTGTTaGTTGTTTTCTGCCATGGAC | + |
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Preference number: 5 (lower is better) Translates to: PSFHPGLGIKLTQVTKQCSPLCC*LFSAMD Trigger: GTCCATGGCAGAAAACAACAAACAGCACAGAGGAGA...GCATTGTTTAGTGACTTGTGTGAGTTTTATACCCAGACCTGGGTGGAATGAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CAA 90 bp | GGGCTAAATAAATGTCTTTATCCTTCATTCCACCCAGGTCTGGGTATAAAACTCCCTCTGTGCTGTTTGTaGTTTTCTGCCATGGACAGC | + |
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Preference number: 5 (lower is better) Translates to: GLNKCLYPSFHPGLGIKLPLCCL*FSAMDS Trigger: GCTGTCCATGGCAGAAAACAACAAACAGCACAGAGG...GAGTTTTATACCCAGACCTGGGTGGAATGAAGGATAAAGACATTTATTTAGCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS TCA 90 bp | TTTCCAACAGATGACTGTGCTCCCTCAGAAACATCATCTTCCAAGTaGAGAGCAGACAAGGGCTTTGATGATGAGTTAACATGCCATTTA | + |
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Preference number: 5 (lower is better) Translates to: FPTDDCAPSETSSSK*RADKGFDDELTCHL Trigger: TAAATGGCATGTTAACTCATCATCAAAGCCCTTGTCTGCTCTTCACTTGGAAGATGATGTTTCTGAGGGAGCACAGTCATCTGTTGGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CAA 90 bp | GGGCTAAATAAATGTCTTTATCCTTCATTCCACCCAGGTCTGGGTATAAAACTCAAGCCAGGTCATTCTTaGAATTCACTAGCAGGCTCA | + |
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Preference number: 5 (lower is better) Translates to: GLNKCLYPSFHPGLGIKLKPGHS*NSLAGS Trigger: TGAGCCTGCTAGTGAATTCAAAGAATGACCTGGCTT...GAGTTTTATACCCAGACCTGGGTGGAATGAAGGATAAAGACATTTATTTAGCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CAA 90 bp | ATTCTGCATGGTATTTATAGTCATTGTTTGTTCTCTTTCAGTGCTCAGGTGTATCCTCGATCAGGGATGTaGAGAATGGAAGCCAAAGCC | + |
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Preference number: 5 (lower is better) Translates to: ILHGIYSHCLFSFSAQVYPRSGM*RMEAKA Trigger: GGCTTTGGCTTCCATTCTCAACATCCCTGATCGAGG...ATACACCTGAGCACTGAAAGAGAACAAACAATGACTATAAATACCATGCAGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CAA 90 bp | CCTTCATTCCACCCAGGTCTGGGTATAAAACTCACACAAGTCACTAAACAATGCCTGCAAGGCTTGGATTaGGTATCTTTCCAAGAATTT | + |
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Preference number: 5 (lower is better) Translates to: PSFHPGLGIKLTQVTKQCLQGLD*VSFQEF Trigger: AAATTCTTGGAAAGATACCAAATCCAAGCCTTGCAG...GCATTGTTTAGTGACTTGTGTGAGTTTTATACCCAGACCTGGGTGGAATGAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS-3UTR CAA 90 bp | CCTTCATTCCACCCAGGTCTGGGTATAAAACTCACACAAGTCACTAAACAATGCCTTAATGTTCTTATGTaGGTACAGTTCATTTCCACG | + |
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Preference number: 5 (lower is better) Translates to: PSFHPGLGIKLTQVTKQCLNVLM*VQFIST Trigger: CGTGGAAATGAACTGTACCAACATAAGAACATTAAG...GCATTGTTTAGTGACTTGTGTGAGTTTTATACCCAGACCTGGGTGGAATGAAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS GCA 90 bp | AACTGTGATCTAATTAATGTCTGCCACATCTTATTTTTCTCTGTTTaGAGTGACTTATGGATTCGCTCTCTGAGAGGTTTAACTGATGTG | + |
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Preference number: 5 (lower is better) Translates to: NCDLINVCHILFFSV*SDLWIRSLRGLTDV Trigger: CACATCAGTTAAACCTCTCAGAGAGCGAATCCATAAGTCACTGCAAACAGAGAAAAATAAGATGTGGCAGACATTAATTAGATCACAGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS CCA 72 bp | GCGTCAACTTGGTCTGGCCAGGAATCAACTTGCCCCTaGCAGGACACCTATTGCCTTTTGTTCCTTGGGCAA | + |
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Preference number: 6 (lower is better) Translates to: ASTWSGQESTCP*QDTYCLLFLGQ Trigger: TTGCCCAAGGAACAAAAGGCAATAGGTGTCCTGCCAGGGGCAAGTTGATTCCTGGCCAGACCAAGTTGACGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS CAA 90 bp | TCTGGCCAGGAATCAACTTGCCCCTGGCAGGACACCTATTGCCTTTaGTTCCTTGGGCAAGTTTGCCACCAGCTTTACTGTGTGAGCCAC | + |
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Preference number: 6 (lower is better) Translates to: SGQESTCPWQDTYCL*FLGQVCHQLYCVSH Trigger: GTGGCTCACACAGTAAAGCTGGTGGCAAACTTGCCCAAGGAACAAAAGGCAATAGGTGTCCTGCCAGGGGCAAGTTGATTCCTGGCCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS TCA 72 bp | ACAACTGTTTCTCTCGAGCAGCATGCTTCAAGTTGGTaGAGGCCTCTCTCCCCAGTCCTCGATCAGGGATGT | + |
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Preference number: 6 (lower is better) Translates to: TTVSLEQHASSW*RPLSPVLDQGC Trigger: ACATCCCTGATCGAGGACTGGGGAGAGAGGCCTTCACCAACTTGAAGCATGCTGCTCGAGAGAAACAGTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS CAA 72 bp | ATAGACAACTGTTTCTCTCGAGCAGCATGCTTCAAGTaGGTGAAGGCCTCTCTCCCCAGTCCTCGATCAGGG | + |
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Preference number: 6 (lower is better) Translates to: IDNCFSRAACFK*VKASLPSPRSG Trigger: CCCTGATCGAGGACTGGGGAGAGAGGCCTTCACCAACTTGAAGCATGCTGCTCGAGAGAAACAGTTGTCTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS CAA 72 bp | GCAGGACACCTATTGCCTTTTGTTCCTTGGGCAAGTTaGCCACCAGCTTTACTGTGTGAGCCACTGGGCACT | + |
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Preference number: 6 (lower is better) Translates to: AGHLLPFVPWAS*PPALLCEPLGT Trigger: AGTGCCCAGTGGCTCACACAGTAAAGCTGGTGGCAAACTTGCCCAAGGAACAAAAGGCAATAGGTGTCCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS TCA 72 bp | CCGTACCTGCTCGTCATTCTGGCTGCATTTTACTGGTaGCTCTGGCATGTGAGGATTAGCTTCGTCACTGAC | + |
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Preference number: 6 (lower is better) Translates to: PYLLVILAAFYW*LWHVRISFVTD Trigger: GTCAGTGACGAAGCTAATCCTCACATGCCAGAGTCACCAGTAAAATGCAGCCAGAATGACGAGCAGGTACGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048518.16 ENSMUST00000164121.8 ENSMUST00000168163.8 |
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| CDS GCA 72 bp | CAGGACACCTATTGCCTTTTGTTCCTTGGGCAAGTTTaGCACCAGCTTTACTGTGTGAGCCACTGGGCACTT | + |
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Preference number: 6 (lower is better) Translates to: QDTYCLLFLGQV*HQLYCVSHWAL Trigger: AAGTGCCCAGTGGCTCACACAGTAAAGCTGGTGGCAAACTTGCCCAAGGAACAAAAGGCAATAGGTGTCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS CAA 72 bp | TCACTGAGACAGACTGTAAATTCTCCTCTGTGCTGTTaGTTGTTTTCTGCCATGGACAGCTGCAGGGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: SLRQTVNSPLCC*LFSAMDSCRAR Trigger: CCTGGCCCTGCAGCTGTCCATGGCAGAAAACAACAAACAGCACAGAGGAGAATTTACAGTCTGTCTCAGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048518.16 ENSMUST00000164121.8 ENSMUST00000164803.2 ENSMUST00000168163.8 |
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| CDS CAA 72 bp | GAATCAACTTGCCCCTGGCAGGACACCTATTGCCTTTaGTTCCTTGGGCAAGTTTGCCACCAGCTTTACTGT | + |
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Preference number: 6 (lower is better) Translates to: ESTCPWQDTYCL*FLGQVCHQLYC Trigger: ACAGTAAAGCTGGTGGCAAACTTGCCCAAGGAACAAAAGGCAATAGGTGTCCTGCCAGGGGCAAGTTGATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS CAA 90 bp | ATCAGAAACATAGACAACTGTTTCTCTCGAGCAGCATGCTTCAAGTaGGTGAAGGCCTCTCTCCCCAGTCCTCGATCAGGGATGTTGAGA | + |
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Preference number: 6 (lower is better) Translates to: IRNIDNCFSRAACFK*VKASLPSPRSGMLR Trigger: TCTCAACATCCCTGATCGAGGACTGGGGAGAGAGGCCTTCACCAACTTGAAGCATGCTGCTCGAGAGAAACAGTTGTCTATGTTTCTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS GCA 72 bp | ATCAGAAACATAGACAACTGTTTCTCTCGAGCAGCATaGTTCAAGTTGGTGAAGGCCTCTCTCCCCAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: IRNIDNCFSRAA*FKLVKASLPSP Trigger: AGGACTGGGGAGAGAGGCCTTCACCAACTTGAAGCATGCTGCTCGAGAGAAACAGTTGTCTATGTTTCTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS CAA 90 bp | GTAGTTTGTCACCCTTCCATCTGCCCACGTGGGCATTTTCAGAACTaGCTTCAATTCTTGCTTTTCCAACAGATGACTGTGCTCCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: VVCHPSICPRGHFQN*LQFLLFQQMTVLPQ Trigger: CTGAGGGAGCACAGTCATCTGTTGGAAAAGCAAGAATTGAAGCAAGTTCTGAAAATGCCCACGTGGGCAGATGGAAGGGTGACAAACTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS TCA 72 bp | TCATTCTGGCTGCATTTTACTGGTGACTCTGGCATGTaGGGATTAGCTTCGTCACTGACTGCATACTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: SFWLHFTGDSGM*GLASSLTAYSV Trigger: CACAGAGTATGCAGTCAGTGACGAAGCTAATCCTCACATGCCAGAGTCACCAGTAAAATGCAGCCAGAATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048518.16 ENSMUST00000164121.8 ENSMUST00000168163.8 |
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| CDS CAA 72 bp | CACCCTTCCATCTGCCCACGTGGGCATTTTCAGAACTaGCTTCAATTCTTGCTTTTCCAACAGATGACTGTG | + |
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Preference number: 6 (lower is better) Translates to: HPSICPRGHFQN*LQFLLFQQMTV Trigger: CACAGTCATCTGTTGGAAAAGCAAGAATTGAAGCAAGTTCTGAAAATGCCCACGTGGGCAGATGGAAGGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS CAA 90 bp | CCTTCCATCTGCCCACGTGGGCATTTTCAGAACTTGCTTCAATTCTaGCTTTTCCAACAGATGACTGTGCTCCCTCAGAAACATCATCTT | + |
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Preference number: 6 (lower is better) Translates to: PSICPRGHFQNLLQF*LFQQMTVLPQKHHL Trigger: AAGATGATGTTTCTGAGGGAGCACAGTCATCTGTTGGAAAAGCAAGAATTGAAGCAAGTTCTGAAAATGCCCACGTGGGCAGATGGAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS GCA 72 bp | TCAATGAAATTAATAAACTCCGACAGGCCTTTTACATaGGCCCACAGAGGATCTGATGGTGACGGCGCATAT | + |
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Preference number: 6 (lower is better) Translates to: SMKLINSDRPFT*AHRGSDGDGAY Trigger: ATATGCGCCGTCACCATCAGATCCTCTGTGGGCGCATGTAAAAGGCCTGTCGGAGTTTATTAATTTCATTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS CCA 72 bp | CTCTTGTGTGGGAGACCTAAAGAGTGTGAGAACAGATaGTCCACTATGAGGAACTGTACTTTCGTCATTGTA | + |
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Preference number: 6 (lower is better) Translates to: LLCGRPKECENR*STMRNCTFVIV Trigger: TACAATGACGAAAGTACAGTTCCTCATAGTGGACCATCTGTTCTCACACTCTTTAGGTCTCCCACACAAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS CAA 72 bp | TTCGATATCTGCCTTTGTGTAGATTTTCTTGGTAGTTaGTCACCCTTCCATCTGCCCACGTGGGCATTTTCA | + |
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Preference number: 6 (lower is better) Translates to: FDICLCVDFLGS*SPFHLPTWAFS Trigger: TGAAAATGCCCACGTGGGCAGATGGAAGGGTGACAAACTACCAAGAAAATCTACACAAAGGCAGATATCGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS TCA 72 bp | TTCTTATGTTGGTACAGTTCATTTCCACGGTCACAGTaGAGATTCTCACTGTCTAAGTCCAGCTGTTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: FLCWYSSFPRSQ*RFSLSKSSCFL Trigger: GAGGAAACAGCTGGACTTAGACAGTGAGAATCTTCACTGTGACCGTGGAAATGAACTGTACCAACATAAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS CCA 72 bp | TTTCTTGGTAGTTTGTCACCCTTCCATCTGCCCACGTaGGCATTTTCAGAACTTGCTTCAATTCTTGCTTTT | + |
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Preference number: 6 (lower is better) Translates to: FLGSLSPFHLPT*AFSELASILAF Trigger: AAAAGCAAGAATTGAAGCAAGTTCTGAAAATGCCCACGTGGGCAGATGGAAGGGTGACAAACTACCAAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS CAA 72 bp | GCCACTGGGCACTTTAGGGATCTTAATGTTCTTATGTaGGTACAGTTCATTTCCACGGTCACAGTGAAGATT | + |
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Preference number: 6 (lower is better) Translates to: ATGHFRDLNVLM*VQFISTVTVKI Trigger: AATCTTCACTGTGACCGTGGAAATGAACTGTACCAACATAAGAACATTAAGATCCCTAAAGTGCCCAGTGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS TCA 72 bp | GGAGACCTAAAGAGTGTGAGAACAGATGGTCCACTATaGGGAACTGTACTTTCGTCATTGTATAAAAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: GDLKSVRTDGPL*GTVLSSLYKSS Trigger: AGAGCTTTTATACAATGACGAAAGTACAGTTCCTCATAGTGGACCATCTGTTCTCACACTCTTTAGGTCTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS CAA 72 bp | TCGCTGATAATATCCGACTCCCTGCAAGGCTTGGATTaGGTATCTTTCCAAGAATTTCATCTAGCTTGTCAA | + |
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Preference number: 6 (lower is better) Translates to: SLIISDSLQGLD*VSFQEFHLACQ Trigger: TTGACAAGCTAGATGAAATTCTTGGAAAGATACCAAATCCAAGCCTTGCAGGGAGTCGGATATTATCAGCGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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| CDS CAA 72 bp | TCTTTATCGCTGATAATATCCGACTCCCTGCAAGGCTaGGATTTGGTATCTTTCCAAGAATTTCATCTAGCT | + |
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Preference number: 6 (lower is better) Translates to: SLSLIISDSLQG*DLVSFQEFHLA Trigger: AGCTAGATGAAATTCTTGGAAAGATACCAAATCCAAGCCTTGCAGGGAGTCGGATATTATCAGCGATAAAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048518.16 |
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