RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PARP6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025237

Ensembl transcript IDs: ENSMUST00000026267.16, ENSMUST00000050483.15, ENSMUST00000167091.3, ENSMUST00000214956.2, ENSMUST00000216351.2

Found 345 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTaGGGCCCCCTCAGTTTGTGTAAACCTGAGTTCCGATCACACGCA +
Preference number: 1 (lower is better)
Translates to: LQGQMDPGVTGWYEG*GPLSLCKPEFRSHA
Trigger: TGCGTGTGATCGGAACTCAGGTTTACACAAACTGAGGGGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR CCA 90 bp AATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATGTaGAGTAGTTCCTGGATCAATCTCCACCATGAAGGCCACCTCTTC +
Preference number: 1 (lower is better)
Translates to: NWANQGWESVRAIQM*SSSWINLHHEGHLF
Trigger: GAAGAGGTGGCCTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR CCA 90 bp TGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTaGGAGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATC +
Preference number: 1 (lower is better)
Translates to: CFIYKQGEVNWANQG*ESVRAIQMWSSSWI
Trigger: GATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR CCA 90 bp AAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCCTGGGGTAACAGGGTaGTACGAGGGCTGGGGCCCC +
Preference number: 2 (lower is better)
Translates to: KQGEVNWANQGWESVRAIPGVTG*YEGWGP
Trigger: GGGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGG...GATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR CCA 90 bp CAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGCCTGGGGTAACAGGGTaGTACGAGGGCTGGGGCCCC +
Preference number: 2 (lower is better)
Translates to: QSGPSKCGVVPGSISTMKPGVTG*YEGWGP
Trigger: GGGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGG...CTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR TCA 90 bp TACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCTGCAGGAACCTTGACTaGATGGATCGGGTCTGGGGG +
Preference number: 2 (lower is better)
Translates to: YKQGEVNWANQGWESVRACRNLD*MDRVWG
Trigger: CCCCCAGACCCGATCCATTCAGTCAAGGTTCCTGCA...GGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR CCA 90 bp CCCTCAGTTTGTGTAAACCTGAGTTCCGATCACACGCATGATTTCCTTCTGAATCCTGGGGTAACAGGGTaGTACGAGGGCTGGGGCCCC +
Preference number: 2 (lower is better)
Translates to: PSVCVNLSSDHTHDFLLNPGVTG*YEGWGP
Trigger: GGGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGG...ATTCAGAAGGAAATCATGCGTGTGATCGGAACTCAGGTTTACACAAACTGAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR CCA 90 bp GAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATGTGGAGGGCAGATGGATCCTaGGGTAACAGGGTGGTACGA +
Preference number: 2 (lower is better)
Translates to: EVNWANQGWESVRAIQMWRADGS*GNRVVR
Trigger: TCGTACCACCCTGTTACCCCAGGATCCATCTGCCCT...CCACATTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR TCA 90 bp AGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAAACTCTGCAGGAACCTTaGCTGAATGGATCGGGTCTG +
Preference number: 2 (lower is better)
Translates to: RVKSIGQIRGGSQSGPSKTLQEP*LNGSGL
Trigger: CAGACCCGATCCATTCAGTCAAGGTTCCTGCAGAGT...TTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR TCA 90 bp AGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAAGATCAATCTCCACCATaGAGGCCACCTCTTCTATAC +
Preference number: 2 (lower is better)
Translates to: RVKSIGQIRGGSQSGPSKDQSPP*RPPLLY
Trigger: GTATAGAAGAGGTGGCCTTCATGGTGGAGATTGATC...TTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR GCA 90 bp CACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGACCCAAATGTTCCCATaGTTCTGGAGGTCCTTAGAC +
Preference number: 2 (lower is better)
Translates to: HLLLLSPFTRADGSWGNRTQMFP*FWRSLD
Trigger: GTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGT...CCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR CCA 90 bp AGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGATCGGGTCTGGGGGATaGTGTTCATCCTGTTGTATC +
Preference number: 2 (lower is better)
Translates to: SQSGPSKCGVVPGSISTMIGSGG*CSSCCI
Trigger: GATACAACAGGATGAACACCATCCCCCAGACCCGAT...CATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167091.3
3UTR-3UTR CCA 90 bp CAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGATGTTCCCATGCTTCTaGAGGTCCTTAGACGTAATC +
Preference number: 2 (lower is better)
Translates to: QSGPSKCGVVPGSISTMKMFPCF*RSLDVI
Trigger: GATTACGTCTAAGGACCTCCAGAAGCATGGGAACAT...CTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR TCA 90 bp TTCTCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATATTTACAAACAGGGTaGAGTCAATTGGGCAAATCA +
Preference number: 2 (lower is better)
Translates to: FSGQPHLLLLSPFTRADGYLQTG*SQLGKS
Trigger: TGATTTGCCCAATTGACTTCACCCTGTTTGTAAATA...TCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR CCA 90 bp CATGATTTCCTTCTGAATCTTGGGGTCCTGAGTATTAATGTTGGCATCGCCCACATGTTCCCATGCTTCTaGAGGTCCTTAGACGTAATC +
Preference number: 2 (lower is better)
Translates to: HDFLLNLGVLSINVGIAHMFPCF*RSLDVI
Trigger: GATTACGTCTAAGGACCTCCAGAAGCATGGGAACAT...GTGGGCGATGCCAACATTAATACTCAGGACCCCAAGATTCAGAAGGAAATCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR TCA 90 bp TGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGATCAATCTCCACCATaGAGGCCACCTCTTCTATAC +
Preference number: 2 (lower is better)
Translates to: CFIYKQGEVNWANQGWESDQSPP*RPPLLY
Trigger: GTATAGAAGAGGTGGCCTTCATGGTGGAGATTGATC...TGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR TCA 90 bp CAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGTATTTACAAACAGGGTaGAGTCAATTGGGCAAATCA +
Preference number: 2 (lower is better)
Translates to: QSGPSKCGVVPGSISTMKYLQTG*SQLGKS
Trigger: TGATTTGCCCAATTGACTTCACCCTGTTTGTAAATA...CTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR CCA 90 bp TTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAATGTGGAGTAGTTCCTaGATCAATCTCCACCATGAA +
Preference number: 2 (lower is better)
Translates to: LFTNRVKSIGQIRGGSQSMWSSS*INLHHE
Trigger: TTCATGGTGGAGATTGATCCAGGAACTACTCCACAT...TGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR CCA 72 bp CAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTaGGGCCCCCTCAGTTTGTGTAAACCTGAGTTCCGA +
Preference number: 3 (lower is better)
Translates to: QMDPGVTGWYEG*GPLSLCKPEFR
Trigger: TCGGAACTCAGGTTTACACAAACTGAGGGGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR CAA 90 bp CTTGGGGTCCTGAGTATTAATGTTGGCATCGCCCACCTGCCCATCCTCATATACGACTCTGCAGGAACCTaGACTGAATGGATCGGGTCT +
Preference number: 3 (lower is better)
Translates to: LGVLSINVGIAHLPILIYDSAGT*TEWIGS
Trigger: AGACCCGATCCATTCAGTCAAGGTTCCTGCAGAGTC...GTATATGAGGATGGGCAGGTGGGCGATGCCAACATTAATACTCAGGACCCCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR CAA 90 bp CAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGTCAGGACAGCCTCACTaGCTGCTCCTGAGTCCTTTT +
Preference number: 3 (lower is better)
Translates to: QSGPSKCGVVPGSISTMKSGQPH*LLLSPF
Trigger: AAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGA...CTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR TCA 72 bp ATACAGTTTAGATTCCGACTCTGCAGGAACCTTGACTaGATGGATCGGGTCTGGGGGATGGTGTTCATCCTG +
Preference number: 3 (lower is better)
Translates to: IQFRFRLCRNLD*MDRVWGMVFIL
Trigger: CAGGATGAACACCATCCCCCAGACCCGATCCATTCAGTCAAGGTTCCTGCAGAGTCGGAATCTAAACTGTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167091.3
3UTR-3UTR CAA 90 bp CCAAATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATCACTTCACAAAGTGCTCAGGACAGCCTCACTaGCTGCTCCTGAGTCCTTTT +
Preference number: 3 (lower is better)
Translates to: PNVPMLLEVLRRNHFTKCSGQPH*LLLSPF
Trigger: AAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGA...GCACTTTGTGAAGTGATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR GCA 72 bp ACATGGTCAGACACAGGGCACACCCAAATGTTCCCATaGTTCTGGAGGTCCTTAGACGTAATCACTTCACAA +
Preference number: 3 (lower is better)
Translates to: TWSDTGHTQMFP*FWRSLDVITSQ
Trigger: TTGTGAAGTGATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGTGTGCCCTGTGTCTGACCATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR CCA 72 bp TCAGACACAGGGCACACCCAAATGTTCCCATGCTTCTaGAGGTCCTTAGACGTAATCACTTCACAAAGTGCT +
Preference number: 3 (lower is better)
Translates to: SDTGHTQMFPCF*RSLDVITSQSA
Trigger: AGCACTTTGTGAAGTGATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGTGTGCCCTGTGTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
3UTR-3UTR CAA 90 bp TTTATTGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGTCAGGACAGCCTCACTaGCTGCTCCTGAGTCCTTTT +
Preference number: 3 (lower is better)
Translates to: FIVLFTNRVKSIGQIRGGSGQPH*LLLSPF
Trigger: AAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGA...CCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACAATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCCCTTGGCAGGAGGGCTaGTCAGCAGGAGGAATTGGT +
Preference number: 4 (lower is better)
Translates to: FTRADGSWGNRVVRGLGPPWQEG*SAGGIG
Trigger: ACCAATTCCTCCTGCTGAGCAGCCCTCCTGCCAAGG...GGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp GTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGAACCGAGCCTCCTTaGCAGGAGGGCTGCTCAGCA +
Preference number: 4 (lower is better)
Translates to: VLLQGQMDPGVTGWYEGWGTEPP*QEGCSA
Trigger: TGCTGAGCAGCCCTCCTGCCAAGGAGGCTCGGTTCC...CCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCCTTCCGTAGAGCTTCTTaGCTGTCCGGAACCGAGCCT +
Preference number: 4 (lower is better)
Translates to: LQGQMDPGVTGWYEGWGPFRRAS*LSGTEP
Trigger: AGGCTCGGTTCCGGACAGCCAAGAAGCTCTACGGAA...GGGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCCTCTATACAGGTCAGCTaGACAGCTCCCCTGAACTCC +
Preference number: 4 (lower is better)
Translates to: LQGQMDPGVTGWYEGWGPSIQVS*TAPLNS
Trigger: GGAGTTCAGGGGAGCTGTGCAGCTGACCTGTATAGA...GGGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp CAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTGACCTGCCTGGGGGCTaGGGGGATAGCCAAACACCT +
Preference number: 4 (lower is better)
Translates to: QPHLLLLSPFTRADGSWGDLPGG*GDSQTP
Trigger: AGGTGTTTGGCTATCCCCCCAGCCCCCAGGCAGGTC...ACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000167091.3
CDS-3UTR CCA 90 bp TTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCCACTGCAGAAGAGGATaGGCCAAGGGATCCAGCTTG +
Preference number: 4 (lower is better)
Translates to: FTRADGSWGNRVVRGLGPHCRRG*AKGSSL
Trigger: CAAGCTGGATCCCTTGGCCCATCCTCTTCTGCAGTG...GGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000214956.2
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp CCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGTGGTGTAGGATGCATTaGCCAGCCCATTGCGCAGGA +
Preference number: 4 (lower is better)
Translates to: PFTRADGSWGNRVVRGLGWCRMH*PAHCAG
Trigger: TCCTGCGCAATGGGCTGGTCAATGCATCCTACACCA...CCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCCTGTAGCCACTTCTTCTaGAGCTCCAGACATGACTCC +
Preference number: 4 (lower is better)
Translates to: LQGQMDPGVTGWYEGWGPCSHFF*SSRHDS
Trigger: GGAGTCATGTCTGGAGCTGCAGAAGAAGTGGCTACA...GGGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp AGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGGCCACAGGAGAAGTCCGTGCTaGGGGAGGGAGGCCCACGTG +
Preference number: 4 (lower is better)
Translates to: RAIQMWSSSWINLHHEGHRRSPC*GREAHV
Trigger: CACGTGGGCCTCCCTCCCCCAGCACGGACTTCTCCT...GTGGCCTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000167091.3
CDS-3UTR CCA 90 bp GTTGGCATCGCCCACCTGCCCATCCTCATATACAAAGAAGAACCTTGTGCAGACAGGAGAAGTCCGTGCTaGGGGAGGGAGGCCCACGTG +
Preference number: 4 (lower is better)
Translates to: VGIAHLPILIYKEEPCADRRSPC*GREAHV
Trigger: CACGTGGGCCTCCCTCCCCCAGCACGGACTTCTCCT...GTCTGCACAAGGTTCTTCTTTGTATATGAGGATGGGCAGGTGGGCGATGCCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167091.3
CDS-3UTR CCA 90 bp TTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCCAAGCTGCTCTACACATaGCCACCAGCAGATCTACCA +
Preference number: 4 (lower is better)
Translates to: LQGQMDPGVTGWYEGWGPKLLYT*PPADLP
Trigger: TGGTAGATCTGCTGGTGGCCATGTGTAGAGCAGCTT...GGGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp CCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCACTGCAGAAGAGGATaGGCCAAGGGATCCAGCTTG +
Preference number: 4 (lower is better)
Translates to: PFTRADGSWGNRVVRGLGHCRRG*AKGSSL
Trigger: CAAGCTGGATCCCTTGGCCCATCCTCTTCTGCAGTG...CCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000214956.2
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCGGAACCGAGCCTCCTTaGCAGGAGGGCTGCTCAGCA +
Preference number: 4 (lower is better)
Translates to: SGQPHLLLLSPFTRADGSGTEPP*QEGCSA
Trigger: TGCTGAGCAGCCCTCCTGCCAAGGAGGCTCGGTTCC...GGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCAACCTTGTGCAGACATaGTCAGACACAGGGCACACC +
Preference number: 4 (lower is better)
Translates to: FTRADGSWGNRVVRGLGPNLVQT*SDTGHT
Trigger: GGTGTGCCCTGTGTCTGACCATGTCTGCACAAGGTT...GGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR GCA 90 bp GTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGTGGGGCTCAGGTAGATaGCTTTGCCATAGGCTGCTC +
Preference number: 4 (lower is better)
Translates to: VLLQGQMDPGVTGWYEGWWGSGR*LCHRLL
Trigger: GAGCAGCCTATGGCAAAGGCATCTACCTGAGCCCCA...CCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR GCA 90 bp TTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCTTGGCATCGCCCACCTaGCCATCCTCATATACAAAG +
Preference number: 4 (lower is better)
Translates to: FTRADGSWGNRVVRGLGPLASPT*PSSYTK
Trigger: CTTTGTATATGAGGATGGGCAGGTGGGCGATGCCAA...GGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR GCA 90 bp TTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCTCCTGTGCTGTCCTTTaGCCATTCCACTGCAGAAGA +
Preference number: 4 (lower is better)
Translates to: FTRADGSWGNRVVRGLGPSCAVL*PFHCRR
Trigger: TCTTCTGCAGTGGAATGGGCAAAGGACAGCACAGGA...GGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214956.2
CDS-3UTR CCA 90 bp ACATGGTCAGACACAGGGCACACCCAAATGTTCCCATGCTTCTGGAGGTCCTTAGGAACCGAGCCTCCTTaGCAGGAGGGCTGCTCAGCA +
Preference number: 4 (lower is better)
Translates to: TWSDTGHTQMFPCFWRSLGTEPP*QEGCSA
Trigger: TGCTGAGCAGCCCTCCTGCCAAGGAGGCTCGGTTCC...TAAGGACCTCCAGAAGCATGGGAACATTTGGGTGTGCCCTGTGTCTGACCATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp CCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGGGTCCATCAAGGTACTaGGAGAGAGAAAACCGTAGC +
Preference number: 4 (lower is better)
Translates to: PFTRADGSWGNRVVRGLGGPSRY*ERENRS
Trigger: GCTACGGTTTTCTCTCTCTCAGTACCTTGATGGACC...CCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGG
56% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp CAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTCTGCAGCTCCAGACATaGCTCCCAGTGTGTAGAAGG +
Preference number: 4 (lower is better)
Translates to: QPHLLLLSPFTRADGSWGLQLQT*LPVCRR
Trigger: CCTTCTACACACTGGGAGTCATGTCTGGAGCTGCAG...ACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp TTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCCCCATTGCGCAGGATTaGATGCCAATTCTCAATGTG +
Preference number: 4 (lower is better)
Translates to: FTRADGSWGNRVVRGLGPPIAQD*MPILNV
Trigger: CACATTGAGAATTGGCATTCAATCCTGCGCAATGGG...GGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp CACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGTGCAGGAACCTTGACTaGATGGATCGGGTCTGGGGG +
Preference number: 4 (lower is better)
Translates to: HLLLLSPFTRADGSWGNRCRNLD*MDRVWG
Trigger: CCCCCAGACCCGATCCATTCAGTCAAGGTTCCTGCA...CCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR TCA 90 bp GTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGACTCTGCAGGAACCTTaGCTGAATGGATCGGGTCTG +
Preference number: 4 (lower is better)
Translates to: VLLQGQMDPGVTGWYEGWTLQEP*LNGSGL
Trigger: CAGACCCGATCCATTCAGTCAAGGTTCCTGCAGAGT...CCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR GCA 90 bp CAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTGCCTTGAACCAACTGTaGCTCTTCTCCTGCTGGGTC +
Preference number: 4 (lower is better)
Translates to: QPHLLLLSPFTRADGSWGALNQL*LFSCWV
Trigger: GACCCAGCAGGAGAAGAGGCACAGTTGGTTCAAGGC...ACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGACCTTGGCAGGAGGGCTaGTCAGCAGGAGGAATTGGT +
Preference number: 4 (lower is better)
Translates to: LLSPFTRADGSWGNRVVRPWQEG*SAGGIG
Trigger: ACCAATTCCTCCTGCTGAGCAGCCCTCCTGCCAAGG...TCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp AGTATTAATGTTGGCATCGCCCACCTGCCCATCCTCATATACAAAGAAGAACCTGGGAGGCCCACGTGCTaGGGGCACAGGAGACCTGCC +
Preference number: 4 (lower is better)
Translates to: SINVGIAHLPILIYKEEPGRPTC*GHRRPA
Trigger: GGCAGGTCTCCTGTGCCCCCAGCACGTGGGCCTCCC...AGGTTCTTCTTTGTATATGAGGATGGGCAGGTGGGCGATGCCAACATTAATACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167091.3
CDS-3UTR CCA 90 bp TTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCATCCATACTCCAGAGTaGGGATGTTCTTGCAGTGAC +
Preference number: 4 (lower is better)
Translates to: FTRADGSWGNRVVRGLGPIHTPE*GCSCSD
Trigger: GTCACTGCAAGAACATCCCCACTCTGGAGTATGGAT...GGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp CAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGGGAACCGAGCCTCCTTaGCAGGAGGGCTGCTCAGCA +
Preference number: 4 (lower is better)
Translates to: QSGPSKCGVVPGSISTMKGTEPP*QEGCSA
Trigger: TGCTGAGCAGCCCTCCTGCCAAGGAGGCTCGGTTCC...CTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCCATGTTCCCATGCTTCTaGAGGTCCTTAGACGTAATC +
Preference number: 4 (lower is better)
Translates to: LQGQMDPGVTGWYEGWGPMFPCF*RSLDVI
Trigger: GATTACGTCTAAGGACCTCCAGAAGCATGGGAACAT...GGGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR CCA 90 bp GTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGAACCTTGTGCAGACATaGTCAGACACAGGGCACACC +
Preference number: 4 (lower is better)
Translates to: VLLQGQMDPGVTGWYEGWNLVQT*SDTGHT
Trigger: GGTGTGCCCTGTGTCTGACCATGTCTGCACAAGGTT...CCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR TCA 90 bp AGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGCTGCACAGCTCCCCTaGACTCCATACAGAAATTCC +
Preference number: 4 (lower is better)
Translates to: SPFTRADGSWGNRVVRGLAAQLP*TPYRNS
Trigger: GGAATTTCTGTATGGAGTTCAGGGGAGCTGTGCAGC...CAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp CACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGCTGCAGCTCCAGACATaGCTCCCAGTGTGTAGAAGG +
Preference number: 4 (lower is better)
Translates to: HLLLLSPFTRADGSWGNRLQLQT*LPVCRR
Trigger: CCTTCTACACACTGGGAGTCATGTCTGGAGCTGCAG...CCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp CTGAATGGATCGGGTCTGGGGGATGGTGTTCATCCTGTTGTATCTCTGGACCAGCTGCAGCTCCAGACATaGCTCCCAGTGTGTAGAAGG +
Preference number: 4 (lower is better)
Translates to: LNGSGLGDGVHPVVSLDQLQLQT*LPVCRR
Trigger: CCTTCTACACACTGGGAGTCATGTCTGGAGCTGCAG...CTGGTCCAGAGATACAACAGGATGAACACCATCCCCCAGACCCGATCCATTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167091.3
CDS-3UTR TCA 90 bp GTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGCTTGATTTCCAAATATaGGCCCTGGGTCATCTCCCG +
Preference number: 4 (lower is better)
Translates to: VLLQGQMDPGVTGWYEGWLDFQI*ALGHLP
Trigger: CGGGAGATGACCCAGGGCTCATATTTGGAAATCAAG...CCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp TCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGTGTAGGATGCATTaGCCAGCCCATTGCGCAGGA +
Preference number: 4 (lower is better)
Translates to: SGQPHLLLLSPFTRADGSWCRMH*PAHCAG
Trigger: TCCTGCGCAATGGGCTGGTCAATGCATCCTACACCA...GGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp TTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCCTCCTTTGCCCATTCCTaGGTATCCAAAGGAAATACT +
Preference number: 4 (lower is better)
Translates to: LQGQMDPGVTGWYEGWGPSFAHS*VSKGNT
Trigger: AGTATTTCCTTTGGATACTCAGGAATGGGCAAAGGA...GGGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR TCA 90 bp AGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGGCCACTGCAGGAACCTTGACTaGATGGATCGGGTCTGGGGG +
Preference number: 4 (lower is better)
Translates to: RAIQMWSSSWINLHHEGHCRNLD*MDRVWG
Trigger: CCCCCAGACCCGATCCATTCAGTCAAGGTTCCTGCA...GTGGCCTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR GCA 90 bp CAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTTCTATACAGGTCAGCTaGACAGCTCCCCTGAACTCC +
Preference number: 4 (lower is better)
Translates to: QPHLLLLSPFTRADGSWGSIQVS*TAPLNS
Trigger: GGAGTTCAGGGGAGCTGTGCAGCTGACCTGTATAGA...ACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp AGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGCCTTGAACCAACTGTaGCTCTTCTCCTGCTGGGTC +
Preference number: 4 (lower is better)
Translates to: RTASLAAPESFYKGRWILALNQL*LFSCWV
Trigger: GACCCAGCAGGAGAAGAGGCACAGTTGGTTCAAGGC...CAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGCCTTGAACCAACTGTaGCTCTTCTCCTGCTGGGTC +
Preference number: 4 (lower is better)
Translates to: LLSPFTRADGSWGNRVVRALNQL*LFSCWV
Trigger: GACCCAGCAGGAGAAGAGGCACAGTTGGTTCAAGGC...TCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp GTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGTGTAGCCACTTCTTCTaGAGCTCCAGACATGACTCC +
Preference number: 4 (lower is better)
Translates to: VLLQGQMDPGVTGWYEGWCSHFF*SSRHDS
Trigger: GGAGTCATGTCTGGAGCTGCAGAAGAAGTGGCTACA...CCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGGCCCCTTGGCAGGAGGGCTaGTCAGCAGGAGGAATTGGT +
Preference number: 4 (lower is better)
Translates to: SGPSKCGVVPGSISTMKAPWQEG*SAGGIG
Trigger: ACCAATTCCTCCTGCTGAGCAGCCCTCCTGCCAAGG...GGCCTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp GTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGTCTGCATCAAGCTGTaGGTGTCTATACAGGTCAGC +
Preference number: 4 (lower is better)
Translates to: VLLQGQMDPGVTGWYEGWVCIKL*VSIQVS
Trigger: GCTGACCTGTATAGACACCCACAGCTTGATGCAGAC...CCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp CACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGAGTCTTGGGATCAGTaGGGTCCACCACAGAGGGAT +
Preference number: 4 (lower is better)
Translates to: HLLLLSPFTRADGSWGNRESWDQ*GPPQRD
Trigger: ATCCCTCTGTGGTGGACCCCACTGATCCCAAGACTC...CCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp GGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATGCACTGCAGAAGAGGATaGGCCAAGGGATCCAGCTTG +
Preference number: 4 (lower is better)
Translates to: GEVNWANQGWESVRAIQMHCRRG*AKGSSL
Trigger: CAAGCTGGATCCCTTGGCCCATCCTCTTCTGCAGTG...CATTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp CTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGACACTGCAGAAGAGGATaGGCCAAGGGATCCAGCTTG +
Preference number: 4 (lower is better)
Translates to: LLSPFTRADGSWGNRVVRHCRRG*AKGSSL
Trigger: CAAGCTGGATCCCTTGGCCCATCCTCTTCTGCAGTG...TCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000214956.2
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp AAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCTTCCGTAGAGCTTCTTaGCTGTCCGGAACCGAGCCT +
Preference number: 4 (lower is better)
Translates to: KQGEVNWANQGWESVRAIFRRAS*LSGTEP
Trigger: AGGCTCGGTTCCGGACAGCCAAGAAGCTCTACGGAA...GATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp GTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGATCGGGTCTGGGGGATaGTGTTCATCCTGTTGTATC +
Preference number: 4 (lower is better)
Translates to: VLLQGQMDPGVTGWYEGWIGSGG*CSSCCI
Trigger: GATACAACAGGATGAACACCATCCCCCAGACCCGAT...CCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR TCA 90 bp AGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGATGTTCTTGCAGTaGCCACTGACCAAAGGAGAA +
Preference number: 4 (lower is better)
Translates to: SPFTRADGSWGNRVVRGLGMFLQ*PLTKGE
Trigger: TTCTCCTTTGGTCAGTGGTCACTGCAAGAACATCCC...CAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000167091.3
CDS-3UTR TCA 90 bp GACACAGGGCACACCCAAATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATCCTGCAGCTCCAGACATaGCTCCCAGTGTGTAGAAGG +
Preference number: 4 (lower is better)
Translates to: DTGHTQMFPCFWRSLDVILQLQT*LPVCRR
Trigger: CCTTCTACACACTGGGAGTCATGTCTGGAGCTGCAG...GATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGTGTGCCCTGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp CTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTAACTCTGCAGGAACCTTaGCTGAATGGATCGGGTCTG +
Preference number: 4 (lower is better)
Translates to: LLLSPFTRADGSWGNRVVTLQEP*LNGSGL
Trigger: CAGACCCGATCCATTCAGTCAAGGTTCCTGCAGAGT...TACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR GCA 90 bp TTCTCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGAGCCTTGAACCAACTGTaGCTCTTCTCCTGCTGGGTC +
Preference number: 4 (lower is better)
Translates to: FSGQPHLLLLSPFTRADGALNQL*LFSCWV
Trigger: GACCCAGCAGGAGAAGAGGCACAGTTGGTTCAAGGC...TCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp ATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATCACTTCACAAAGTGCTATAGGAGGGAGGCCCACGTaGTGGGGGCACAGGAGACCT +
Preference number: 4 (lower is better)
Translates to: MFPCFWRSLDVITSQSAIGGRPT*WGHRRP
Trigger: AGGTCTCCTGTGCCCCCAGCACGTGGGCCTCCCTCC...TATAGCACTTTGTGAAGTGATTACGTCTAAGGACCTCCAGAAGCATGGGAACAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167091.3
CDS-3UTR GCA 90 bp TTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCCAACGTTGGAATCCTCTaGTCTGCATACTTCATAATC +
Preference number: 4 (lower is better)
Translates to: LQGQMDPGVTGWYEGWGPNVGIL*SAYFII
Trigger: GATTATGAAGTATGCAGAGCAGAGGATTCCAACGTT...GGGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGAGGGGATTCCAAAGCTaGTCTACACATGGCCACCAG +
Preference number: 4 (lower is better)
Translates to: LLLLSPFTRADGSWGNRVRGFQS*STHGHQ
Trigger: CTGGTGGCCATGTGTAGAGCAGCTTTGGAATCCCCT...CACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCAGGGGATTCCAAAGCTaGTCTACACATGGCCACCAG +
Preference number: 4 (lower is better)
Translates to: YKQGEVNWANQGWESVRARGFQS*STHGHQ
Trigger: CTGGTGGCCATGTGTAGAGCAGCTTTGGAATCCCCT...GGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp GTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGAATTGGTGTGAGGTGTaGATGAACTTCAGCCTGCTG +
Preference number: 4 (lower is better)
Translates to: VLLQGQMDPGVTGWYEGWNWCEV*MNFSLL
Trigger: CAGCAGGCTGAAGTTCATGCACACCTCACACCAATT...CCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGTTGCGCAGGATTGAATaGCAATTCTCAATGTGGGAC +
Preference number: 4 (lower is better)
Translates to: PFTRADGSWGNRVVRGLGLRRIE*QFSMWD
Trigger: GTCCCACATTGAGAATTGGCATTCAATCCTGCGCAA...CCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCGCCTTTGCCATAGGCTaGTCCATGCAGCTGCAGTTT +
Preference number: 4 (lower is better)
Translates to: SGQPHLLLLSPFTRADGSAFAIG*SMQLQF
Trigger: AAACTGCAGCTGCATGGAGCAGCCTATGGCAAAGGC...GGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR GCA 90 bp CTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTAGCCTTTGCCATAGGCTaGTCCATGCAGCTGCAGTTT +
Preference number: 4 (lower is better)
Translates to: LLLSPFTRADGSWGNRVVAFAIG*SMQLQF
Trigger: AAACTGCAGCTGCATGGAGCAGCCTATGGCAAAGGC...TACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR GCA 90 bp AGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGTTGGAAGGCATCCTGTaGTGTCCTTTGCCCATTCCA +
Preference number: 4 (lower is better)
Translates to: SPFTRADGSWGNRVVRGLLEGIL*CPLPIP
Trigger: TGGAATGGGCAAAGGACAGCACAGGATGCCTTCCAA...CAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214956.2
CDS-3UTR CCA 90 bp CAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTGTCTGCATCAAGCTGTaGGTGTCTATACAGGTCAGC +
Preference number: 4 (lower is better)
Translates to: QPHLLLLSPFTRADGSWGVCIKL*VSIQVS
Trigger: GCTGACCTGTATAGACACCCACAGCTTGATGCAGAC...ACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp CTTGGGGTCCTGAGTATTAATGTTGGCATCGCCCACCTGCCCATCCTCATATACGAGTCTTGGGATCAGTaGGGTCCACCACAGAGGGAT +
Preference number: 4 (lower is better)
Translates to: LGVLSINVGIAHLPILIYESWDQ*GPPQRD
Trigger: ATCCCTCTGTGGTGGACCCCACTGATCCCAAGACTC...GTATATGAGGATGGGCAGGTGGGCGATGCCAACATTAATACTCAGGACCCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp TTCTCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGAGCTGCACAGCTCCCCTaGACTCCATACAGAAATTCC +
Preference number: 4 (lower is better)
Translates to: FSGQPHLLLLSPFTRADGAAQLP*TPYRNS
Trigger: GGAATTTCTGTATGGAGTTCAGGGGAGCTGTGCAGC...TCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp GGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATGGGGATGTTCTTGCAGTaGCCACTGACCAAAGGAGAA +
Preference number: 4 (lower is better)
Translates to: GEVNWANQGWESVRAIQMGMFLQ*PLTKGE
Trigger: TTCTCCTTTGGTCAGTGGTCACTGCAAGAACATCCC...CATTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000167091.3
CDS-3UTR TCA 90 bp CACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGCTTGATTTCCAAATATaGGCCCTGGGTCATCTCCCG +
Preference number: 4 (lower is better)
Translates to: HLLLLSPFTRADGSWGNRLDFQI*ALGHLP
Trigger: CGGGAGATGACCCAGGGCTCATATTTGGAAATCAAG...CCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp AGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAACTTGATTTCCAAATATaGGCCCTGGGTCATCTCCCG +
Preference number: 4 (lower is better)
Translates to: RVKSIGQIRGGSQSGPSKLDFQI*ALGHLP
Trigger: CGGGAGATGACCCAGGGCTCATATTTGGAAATCAAG...TTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp TTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGCAGGAGGAATTGGTGTaGGGTGTGCATGAACTTCAG +
Preference number: 4 (lower is better)
Translates to: LLLLSPFTRADGSWGNRVQEELV*GVHELQ
Trigger: CTGAAGTTCATGCACACCTCACACCAATTCCTCCTG...CACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp AGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAACAGGAGGAATTGGTGTaGGGTGTGCATGAACTTCAG +
Preference number: 4 (lower is better)
Translates to: RVKSIGQIRGGSQSGPSKQEELV*GVHELQ
Trigger: CTGAAGTTCATGCACACCTCACACCAATTCCTCCTG...TTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp GAGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATTGGTGTAGGATGCATTaGCCAGCCCATTGCGCAGGA +
Preference number: 4 (lower is better)
Translates to: ESVRAIQMWSSSWINLHHWCRMH*PAHCAG
Trigger: TCCTGCGCAATGGGCTGGTCAATGCATCCTACACCA...ATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCGTAGATCTCTTTCACTaGTTCAATGTCTGCATCAAG +
Preference number: 4 (lower is better)
Translates to: FTRADGSWGNRVVRGLGPVDLFH*FNVCIK
Trigger: CTTGATGCAGACATTGAAGCAGTGAAAGAGATCTAC...GGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGATGTAGCCACTTCTTCTaGAGCTCCAGACATGACTCC +
Preference number: 4 (lower is better)
Translates to: LLSPFTRADGSWGNRVVRCSHFF*SSRHDS
Trigger: GGAGTCATGTCTGGAGCTGCAGAAGAAGTGGCTACA...TCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp AGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGGCCACAGGGGATTCCAAAGCTaGTCTACACATGGCCACCAG +
Preference number: 4 (lower is better)
Translates to: RAIQMWSSSWINLHHEGHRGFQS*STHGHQ
Trigger: CTGGTGGCCATGTGTAGAGCAGCTTTGGAATCCCCT...GTGGCCTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAATTGGTGTGAGGTGTaGATGAACTTCAGCCTGCTG +
Preference number: 4 (lower is better)
Translates to: QPHLLLLSPFTRADGSWGNWCEV*MNFSLL
Trigger: CAGCAGGCTGAAGTTCATGCACACCTCACACCAATT...ACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGACAGTTTGGTGTAGGATaGATTGACCAGCCCATTGCG +
Preference number: 4 (lower is better)
Translates to: LLSPFTRADGSWGNRVVRQFGVG*IDQPIA
Trigger: CGCAATGGGCTGGTCAATGCATCCTACACCAAACTG...TCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp GAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATGTGGTCAGGTAGATGCCTTTaGCATAGGCTGCTCCATGCA +
Preference number: 4 (lower is better)
Translates to: EVNWANQGWESVRAIQMWSGRCL*HRLLHA
Trigger: TGCATGGAGCAGCCTATGGCAAAGGCATCTACCTGA...CCACATTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR GCA 90 bp CAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGTGGGGCTCAGGTAGATaGCTTTGCCATAGGCTGCTC +
Preference number: 4 (lower is better)
Translates to: QSGPSKCGVVPGSISTMKWGSGR*LCHRLL
Trigger: GAGCAGCCTATGGCAAAGGCATCTACCTGAGCCCCA...CTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR GCA 90 bp AGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATTGGCATCGCCCACCTaGCCATCCTCATATACAAAG +
Preference number: 4 (lower is better)
Translates to: RVKSIGQIRGGSQSGPSKLASPT*PSSYTK
Trigger: CTTTGTATATGAGGATGGGCAGGTGGGCGATGCCAA...TTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR GCA 90 bp AGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGTTGGCATCGCCCACCTaGCCATCCTCATATACAAAG +
Preference number: 4 (lower is better)
Translates to: RTASLAAPESFYKGRWILLASPT*PSSYTK
Trigger: CTTTGTATATGAGGATGGGCAGGTGGGCGATGCCAA...CAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR CCA 90 bp GGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGAAGCTGATGTTGATGTaGAGGTCAAGGTCCACGTCA +
Preference number: 4 (lower is better)
Translates to: GQPHLLLLSPFTRADGSWKLMLM*RSRSTS
Trigger: TGACGTGGACCTTGACCTCCACATCAACATCAGCTT...CCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp AGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGTCCAACTCGGAGCTCTaGTACACCCAGTTTGCCTTT +
Preference number: 4 (lower is better)
Translates to: RTASLAAPESFYKGRWILSNSEL*YTQFAF
Trigger: AAAGGCAAACTGGGTGTACCAGAGCTCCGAGTTGGA...CAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp GAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATGTGGTCCAACTCGGAGCTCTaGTACACCCAGTTTGCCTTT +
Preference number: 4 (lower is better)
Translates to: EVNWANQGWESVRAIQMWSNSEL*YTQFAF
Trigger: AAAGGCAAACTGGGTGTACCAGAGCTCCGAGTTGGA...CCACATTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCCTTTTGGGTTCTTCATaGTGCAAGAAATGGAACGAT +
Preference number: 4 (lower is better)
Translates to: FTRADGSWGNRVVRGLGPLLGSS*CKKWND
Trigger: ATCGTTCCATTTCTTGCACCATGAAGAACCCAAAAG...GGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCAAGCTGCTCTACACATaGCCACCAGCAGATCTACCA +
Preference number: 4 (lower is better)
Translates to: SGQPHLLLLSPFTRADGSKLLYT*PPADLP
Trigger: TGGTAGATCTGCTGGTGGCCATGTGTAGAGCAGCTT...GGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGGAGTCTTGGGATCAGTaGGGTCCACCACAGAGGGAT +
Preference number: 4 (lower is better)
Translates to: FTNRVKSIGQIRGGSQSGESWDQ*GPPQRD
Trigger: ATCCCTCTGTGGTGGACCCCACTGATCCCAAGACTC...CCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp CAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGCACTGCAGAAGAGGATaGGCCAAGGGATCCAGCTTG +
Preference number: 4 (lower is better)
Translates to: QSGPSKCGVVPGSISTMKHCRRG*AKGSSL
Trigger: CAAGCTGGATCCCTTGGCCCATCCTCTTCTGCAGTG...CTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp CAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAGGAAATACTGGAGATaGGGCTCAGGTAGATGCCTT +
Preference number: 4 (lower is better)
Translates to: QPHLLLLSPFTRADGSWGRKYWR*GSGRCL
Trigger: AAGGCATCTACCTGAGCCCCATCTCCAGTATTTCCT...ACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR CCA 90 bp CACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTCCTTTGCCCATTCTaGAAAGCAAAGGTGCTTCCG +
Preference number: 4 (lower is better)
Translates to: HLLLLSPFTRADGSWGNRVLCPF*KAKVLP
Trigger: CGGAAGCACCTTTGCTTTCCAGAATGGGCAAAGGAC...CCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000167091.3
CDS-3UTR TCA 90 bp AGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGGCTGCACAGCTCCCCTaGACTCCATACAGAAATTCC +
Preference number: 4 (lower is better)
Translates to: SQSGPSKCGVVPGSISTMAAQLP*TPYRNS
Trigger: GGAATTTCTGTATGGAGTTCAGGGGAGCTGTGCAGC...CATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp TCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGGCCCTTGATTTCCAAATATaGGCCCTGGGTCATCTCCCG +
Preference number: 4 (lower is better)
Translates to: SGPSKCGVVPGSISTMKALDFQI*ALGHLP
Trigger: CGGGAGATGACCCAGGGCTCATATTTGGAAATCAAG...GGCCTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp CACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGCCCATTGCGCAGGATTaGATGCCAATTCTCAATGTG +
Preference number: 4 (lower is better)
Translates to: HLLLLSPFTRADGSWGNRPIAQD*MPILNV
Trigger: CACATTGAGAATTGGCATTCAATCCTGCGCAATGGG...CCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp AGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGACTCTGCAGGAACCTTaGCTGAATGGATCGGGTCTG +
Preference number: 4 (lower is better)
Translates to: SQSGPSKCGVVPGSISTMTLQEP*LNGSGL
Trigger: CAGACCCGATCCATTCAGTCAAGGTTCCTGCAGAGT...CATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR TCA 90 bp AGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGTTCCGATCACACGCATaGTTTCCTTCTGAATCTTGG +
Preference number: 4 (lower is better)
Translates to: SPFTRADGSWGNRVVRGLFRSHA*FPSESW
Trigger: CCAAGATTCAGAAGGAAATCATGCGTGTGATCGGAA...CAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR TCA 90 bp GTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGGGGATGTTCTTGCAGTaGCCACTGACCTGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: VLFTNRVKSIGQIRGGSQGMFLQ*PLTWGL
Trigger: CAGCCCCCAGGTCAGTGGTCACTGCAAGAACATCCC...CTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp CACAAAGTGCTATACAGTTTAGATTCCGACTCTGCAGGAACCTTGACTGAATGGGGGATGTTCTTGCAGTaGCCACTGACCTGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: HKVLYSLDSDSAGTLTEWGMFLQ*PLTWGL
Trigger: CAGCCCCCAGGTCAGTGGTCACTGCAAGAACATCCC...CCATTCAGTCAAGGTTCCTGCAGAGTCGGAATCTAAACTGTATAGCACTTTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGTCTATACAGGTCAGCTaGACAGCTCCCCTGAACTCC +
Preference number: 4 (lower is better)
Translates to: FTNRVKSIGQIRGGSQSGSIQVS*TAPLNS
Trigger: GGAGTTCAGGGGAGCTGTGCAGCTGACCTGTATAGA...CCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGACTGTGCCTCTTCTCCTaGTGGGTCTTCAAGAAATCA +
Preference number: 4 (lower is better)
Translates to: LLSPFTRADGSWGNRVVRLCLFS*WVFKKS
Trigger: TGATTTCTTGAAGACCCAGCAGGAGAAGAGGCACAG...TCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACTGTGCCTCTTCTCCTaGTGGGTCTTCAAGAAATCA +
Preference number: 4 (lower is better)
Translates to: LLLSPFTRADGSWGNRVVLCLFS*WVFKKS
Trigger: TGATTTCTTGAAGACCCAGCAGGAGAAGAGGCACAG...TACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp AGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGCTTGATGGTACCACTTaGCTTGAACCAACTGTGCCT +
Preference number: 4 (lower is better)
Translates to: RTASLAAPESFYKGRWILLDGTT*LEPTVP
Trigger: AGGCACAGTTGGTTCAAGGCAAGTGGTACCATCAAG...CAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp AGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGCTAGAAATTATCCACTaGAGAAGAGGATGGGCCAAG +
Preference number: 4 (lower is better)
Translates to: SPFTRADGSWGNRVVRGLLEIIH*RRGWAK
Trigger: CTTGGCCCATCCTCTTCTGCAGTGGATAATTTCTAG...CAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGCATGGAAAGCAAAGGTaGTTCCGTAGAGCTTCTTGG +
Preference number: 4 (lower is better)
Translates to: HLLLLSPFTRADGSWGNRHGKQR*FRRASW
Trigger: CCAAGAAGCTCTACGGAAGCACCTTTGCTTTCCATG...CCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp GGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATGCATGGAAAGCAAAGGTaGTTCCGTAGAGCTTCTTGG +
Preference number: 4 (lower is better)
Translates to: GEVNWANQGWESVRAIQMHGKQR*FRRASW
Trigger: CCAAGAAGCTCTACGGAAGCACCTTTGCTTTCCATG...CATTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TTCTCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCAGGTAGATGCCTTTaGCATAGGCTGCTCCATGCA +
Preference number: 4 (lower is better)
Translates to: FSGQPHLLLLSPFTRADGSGRCL*HRLLHA
Trigger: TGCATGGAGCAGCCTATGGCAAAGGCATCTACCTGA...TCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR GCA 90 bp AAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCTCCTGTGCTGTCCTTTaGCCATTCCTGAGTATCCAA +
Preference number: 4 (lower is better)
Translates to: KQGEVNWANQGWESVRAISCAVL*PFLSIQ
Trigger: TTGGATACTCAGGAATGGGCAAAGGACAGCACAGGA...GATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR GCA 90 bp AGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATCCTGTGCTGTCCTTTaGCCATTCCTGAGTATCCAA +
Preference number: 4 (lower is better)
Translates to: RVKSIGQIRGGSQSGPSKSCAVL*PFLSIQ
Trigger: TTGGATACTCAGGAATGGGCAAAGGACAGCACAGGA...TTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR GCA 90 bp TTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGACCCAAATGTTCCCATaGTTCTGGAGGTCCTTAGAC +
Preference number: 4 (lower is better)
Translates to: LLLLSPFTRADGSWGNRVTQMFP*FWRSLD
Trigger: GTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGT...CACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR GCA 90 bp CTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGATCTGGAAAGCAAAGGTaGTTCCGTAGAGCTTCTTGG +
Preference number: 4 (lower is better)
Translates to: LLSPFTRADGSWGNRVVRSGKQR*FRRASW
Trigger: CCAAGAAGCTCTACGGAAGCACCTTTGCTTTCCAGA...TCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000167091.3
CDS-3UTR CCA 90 bp TTCTCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGAGTCTGCATCAAGCTGTaGGTGTCTATACAGGTCAGC +
Preference number: 4 (lower is better)
Translates to: FSGQPHLLLLSPFTRADGVCIKL*VSIQVS
Trigger: GCTGACCTGTATAGACACCCACAGCTTGATGCAGAC...TCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCGAAAACTGGGAGACTTaGGAATGGGTGAGAAGATGC +
Preference number: 4 (lower is better)
Translates to: YKQGEVNWANQGWESVRAENWET*EWVRRC
Trigger: GCATCTTCTCACCCATTCCCAAGTCTCCCAGTTTTC...GGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCGAAAACTGGGAGACTTaGGAATGGGTGAGAAGATGC +
Preference number: 4 (lower is better)
Translates to: SGQPHLLLLSPFTRADGSENWET*EWVRRC
Trigger: GCATCTTCTCACCCATTCCCAAGTCTCCCAGTTTTC...GGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGGCCTCCAACTCGGAGCTCTaGTACACCCAGTTTGCCTTT +
Preference number: 4 (lower is better)
Translates to: SGPSKCGVVPGSISTMKASNSEL*YTQFAF
Trigger: AAAGGCAAACTGGGTGTACCAGAGCTCCGAGTTGGA...GGCCTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TCCGATCACACGCATGATTTCCTTCTGAATCTTGGGGTCCTGAGTATTAATGTTGACCTGCCTGGGGGCTaGGGGGATAGCCAAACACCT +
Preference number: 4 (lower is better)
Translates to: SDHTHDFLLNLGVLSINVDLPGG*GDSQTP
Trigger: AGGTGTTTGGCTATCCCCCCAGCCCCCAGGCAGGTC...AACATTAATACTCAGGACCCCAAGATTCAGAAGGAAATCATGCGTGTGATCGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000167091.3
CDS-3UTR CCA 90 bp CCATTTTATTGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGGGGAGGCCCACGTGCTaGGGGCACAGGAGACCTGCC +
Preference number: 4 (lower is better)
Translates to: PFYCFIYKQGEVNWANQGGRPTC*GHRRPA
Trigger: GGCAGGTCTCCTGTGCCCCCAGCACGTGGGCCTCCC...CCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACAATAAAATGG
51% GC, longest homopolymer 7 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000167091.3
CDS-3UTR CCA 90 bp TACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCAGCATGGACCCATTCTaGAAGACATGCTGCTCATCA +
Preference number: 4 (lower is better)
Translates to: YKQGEVNWANQGWESVRASMDPF*KTCCSS
Trigger: TGATGAGCAGCATGTCTTCCAGAATGGGTCCATGCT...GGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp AGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGTGCCAATTCTCAATGTaGGACCCATGGAAAGCAAAG +
Preference number: 4 (lower is better)
Translates to: SPFTRADGSWGNRVVRGLCQFSM*DPWKAK
Trigger: CTTTGCTTTCCATGGGTCCCACATTGAGAATTGGCA...CAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp CAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTATCCAAAGGAAATACTaGAGATGGGGCTCAGGTAGA +
Preference number: 4 (lower is better)
Translates to: QPHLLLLSPFTRADGSWGIQRKY*RWGSGR
Trigger: TCTACCTGAGCCCCATCTCCAGTATTTCCTTTGGAT...ACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR CCA 90 bp CAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGAACCTTGTGCAGACATaGTCAGACACAGGGCACACC +
Preference number: 4 (lower is better)
Translates to: QSGPSKCGVVPGSISTMKNLVQT*SDTGHT
Trigger: GGTGTGCCCTGTGTCTGACCATGTCTGCACAAGGTT...CTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR TCA 90 bp AGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGCAGGAGGAATTGGTGTaGGGTGTGCATGAACTTCAG +
Preference number: 4 (lower is better)
Translates to: SQSGPSKCGVVPGSISTMQEELV*GVHELQ
Trigger: CTGAAGTTCATGCACACCTCACACCAATTCCTCCTG...CATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp GTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTGCAGGAACCTTGACTaGATGGATCGGGTCTGGGGG +
Preference number: 4 (lower is better)
Translates to: VLFTNRVKSIGQIRGGSQCRNLD*MDRVWG
Trigger: CCCCCAGACCCGATCCATTCAGTCAAGGTTCCTGCA...CTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR TCA 90 bp TCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTTCCGATCACACGCATaGTTTCCTTCTGAATCTTGG +
Preference number: 4 (lower is better)
Translates to: SGQPHLLLLSPFTRADGSFRSHA*FPSESW
Trigger: CCAAGATTCAGAAGGAAATCATGCGTGTGATCGGAA...GGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR GCA 90 bp TTCTCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGACACTGCTTCAATGTCTaGATCAAGCTGTGGGTGTCT +
Preference number: 4 (lower is better)
Translates to: FSGQPHLLLLSPFTRADGHCFNV*IKLWVS
Trigger: AGACACCCACAGCTTGATGCAGACATTGAAGCAGTG...TCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp ACATGGTCAGACACAGGGCACACCCAAATGTTCCCATGCTTCTGGAGGTCCTTACTGTGCCTCTTCTCCTaGTGGGTCTTCAAGAAATCA +
Preference number: 4 (lower is better)
Translates to: TWSDTGHTQMFPCFWRSLLCLFS*WVFKKS
Trigger: TGATTTCTTGAAGACCCAGCAGGAGAAGAGGCACAG...TAAGGACCTCCAGAAGCATGGGAACATTTGGGTGTGCCCTGTGTCTGACCATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp AGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGGCCACCTTGATGGTACCACTTaGCTTGAACCAACTGTGCCT +
Preference number: 4 (lower is better)
Translates to: RAIQMWSSSWINLHHEGHLDGTT*LEPTVP
Trigger: AGGCACAGTTGGTTCAAGGCAAGTGGTACCATCAAG...GTGGCCTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CCATTTTATTGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGGGAGGGAGGCCCACGTaGTGGGGGCACAGGAGACCT +
Preference number: 4 (lower is better)
Translates to: PFYCFIYKQGEVNWANQGGGRPT*WGHRRP
Trigger: AGGTCTCCTGTGCCCCCAGCACGTGGGCCTCCCTCC...CCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACAATAAAATGG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000167091.3
CDS-3UTR GCA 90 bp TTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGTGTAGCCACTTCTTCTaGAGCTCCAGACATGACTCC +
Preference number: 4 (lower is better)
Translates to: FTNRVKSIGQIRGGSQSGCSHFF*SSRHDS
Trigger: GGAGTCATGTCTGGAGCTGCAGAAGAAGTGGCTACA...CCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp GGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATGCTAGAAATTATCCACTaGAGAAGAGGATGGGCCAAG +
Preference number: 4 (lower is better)
Translates to: GEVNWANQGWESVRAIQMLEIIH*RRGWAK
Trigger: CTTGGCCCATCCTCTTCTGCAGTGGATAATTTCTAG...CATTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp GTTGGCATCGCCCACCTGCCCATCCTCATATACAAAGAAGAACCTTGTGCAGACCATGGAAAGCAAAGGTaGTTCCGTAGAGCTTCTTGG +
Preference number: 4 (lower is better)
Translates to: VGIAHLPILIYKEEPCADHGKQR*FRRASW
Trigger: CCAAGAAGCTCTACGGAAGCACCTTTGCTTTCCATG...GTCTGCACAAGGTTCTTCTTTGTATATGAGGATGGGCAGGTGGGCGATGCCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp GGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATGTTGCGCAGGATTGAATaGCAATTCTCAATGTGGGAC +
Preference number: 4 (lower is better)
Translates to: GEVNWANQGWESVRAIQMLRRIE*QFSMWD
Trigger: GTCCCACATTGAGAATTGGCATTCAATCCTGCGCAA...CATTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp GGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATGCAAAGAAGAACCTTGTaGAGACATGGTCAGACACAG +
Preference number: 4 (lower is better)
Translates to: GEVNWANQGWESVRAIQMQRRTL*RHGQTQ
Trigger: CTGTGTCTGACCATGTCTGCACAAGGTTCTTCTTTG...CATTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR GCA 90 bp AGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGCAAAGAAGAACCTTGTaGAGACATGGTCAGACACAG +
Preference number: 4 (lower is better)
Translates to: RTASLAAPESFYKGRWILQRRTL*RHGQTQ
Trigger: CTGTGTCTGACCATGTCTGCACAAGGTTCTTCTTTG...CAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR CCA 90 bp GGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGTCCTTATTCGATGGCTaGAAAACCTCAATTGATGGC +
Preference number: 4 (lower is better)
Translates to: GQPHLLLLSPFTRADGSWSLFDG*KTSIDG
Trigger: GCCATCAATTGAGGTTTTCCAGCCATCGAATAAGGA...CCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp AGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGTCCTTATTCGATGGCTaGAAAACCTCAATTGATGGC +
Preference number: 4 (lower is better)
Translates to: SPFTRADGSWGNRVVRGLSLFDG*KTSIDG
Trigger: GCCATCAATTGAGGTTTTCCAGCCATCGAATAAGGA...CAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp AGACACAGGGCACACCCAAATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATTCCAACTCGGAGCTCTaGTACACCCAGTTTGCCTTT +
Preference number: 4 (lower is better)
Translates to: RHRAHPNVPMLLEVLRRNSNSEL*YTQFAF
Trigger: AAAGGCAAACTGGGTGTACCAGAGCTCCGAGTTGGA...ATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGTGTGCCCTGTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp CAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGAAGCTGCTCTACACATaGCCACCAGCAGATCTACCA +
Preference number: 4 (lower is better)
Translates to: QSGPSKCGVVPGSISTMKKLLYT*PPADLP
Trigger: TGGTAGATCTGCTGGTGGCCATGTGTAGAGCAGCTT...CTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp CTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTATGCCAATTCTCAATGTaGGACCCATGGAAAGCAAAG +
Preference number: 4 (lower is better)
Translates to: LLLSPFTRADGSWGNRVVCQFSM*DPWKAK
Trigger: CTTTGCTTTCCATGGGTCCCACATTGAGAATTGGCA...TACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp GAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATGTGGATGTTCCCATGCTTCTaGAGGTCCTTAGACGTAATC +
Preference number: 4 (lower is better)
Translates to: EVNWANQGWESVRAIQMWMFPCF*RSLDVI
Trigger: GATTACGTCTAAGGACCTCCAGAAGCATGGGAACAT...CCACATTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
3UTR CAA 72 bp GTGCTATACAGTTTAGATTCCGACTCTGCAGGAACCTaGACTGAATGGATCGGGTCTGGGGGATGGTGTTCA +
Preference number: 4 (lower is better)
Translates to: VLYSLDSDSAGT*TEWIGSGGWCS
Trigger: TGAACACCATCCCCCAGACCCGATCCATTCAGTCAAGGTTCCTGCAGAGTCGGAATCTAAACTGTATAGCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167091.3
CDS-3UTR TCA 90 bp CACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGTCCTTTGCCCATTCCTaGGTATCCAAAGGAAATACT +
Preference number: 4 (lower is better)
Translates to: HLLLLSPFTRADGSWGNRSFAHS*VSKGNT
Trigger: AGTATTTCCTTTGGATACTCAGGAATGGGCAAAGGA...CCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR GCA 90 bp AGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGTAGATCTCTTTCACTaGTTCAATGTCTGCATCAAG +
Preference number: 4 (lower is better)
Translates to: SPFTRADGSWGNRVVRGLVDLFH*FNVCIK
Trigger: CTTGATGCAGACATTGAAGCAGTGAAAGAGATCTAC...CAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp GTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGAAATCATTGCTCAGATaGTTCCATTGTTGGGATGTA +
Preference number: 4 (lower is better)
Translates to: VLLQGQMDPGVTGWYEGWKSLLR*FHCWDV
Trigger: TACATCCCAACAATGGAAGCATCTGAGCAATGATTT...CCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp AGACACAGGGCACACCCAAATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATCTGTGCCTCTTCTCCTaGTGGGTCTTCAAGAAATCA +
Preference number: 4 (lower is better)
Translates to: RHRAHPNVPMLLEVLRRNLCLFS*WVFKKS
Trigger: TGATTTCTTGAAGACCCAGCAGGAGAAGAGGCACAG...ATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGTGTGCCCTGTGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp AGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATGGAATCCTCTGCTCTaGATACTTCATAATCTGGAC +
Preference number: 4 (lower is better)
Translates to: RVKSIGQIRGGSQSGPSKWNPLL*ILHNLD
Trigger: GTCCAGATTATGAAGTATGCAGAGCAGAGGATTCCA...TTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp AGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGGCCACCTAGAAATTATCCACTaGAGAAGAGGATGGGCCAAG +
Preference number: 4 (lower is better)
Translates to: RAIQMWSSSWINLHHEGHLEIIH*RRGWAK
Trigger: CTTGGCCCATCCTCTTCTGCAGTGGATAATTTCTAG...GTGGCCTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp GAGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATAATTGGTGTGAGGTGTaGATGAACTTCAGCCTGCTG +
Preference number: 4 (lower is better)
Translates to: ESVRAIQMWSSSWINLHHNWCEV*MNFSLL
Trigger: CAGCAGGCTGAAGTTCATGCACACCTCACACCAATT...ATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp GAGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATACCCAAATGTTCCCATaGTTCTGGAGGTCCTTAGAC +
Preference number: 4 (lower is better)
Translates to: ESVRAIQMWSSSWINLHHTQMFP*FWRSLD
Trigger: GTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGT...ATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR GCA 90 bp AGACACAGGGCACACCCAAATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATTCCTGTGCTGTCCTTTaGCCATTCTGGAAAGCAAAG +
Preference number: 4 (lower is better)
Translates to: RHRAHPNVPMLLEVLRRNSCAVL*PFWKAK
Trigger: CTTTGCTTTCCAGAATGGGCAAAGGACAGCACAGGA...ATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGTGTGCCCTGTGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167091.3
CDS-3UTR CCA 90 bp CAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAGATGCTTCCATTGTTaGGATGTAAACATACACAGG +
Preference number: 4 (lower is better)
Translates to: QPHLLLLSPFTRADGSWGRCFHC*DVNIHR
Trigger: CCTGTGTATGTTTACATCCCAACAATGGAAGCATCT...ACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp GAGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAAACTGGGAGACTTaGGAATGGGTGAGAAGATGC +
Preference number: 4 (lower is better)
Translates to: ESVRAIQMWSSSWINLHHENWET*EWVRRC
Trigger: GCATCTTCTCACCCATTCCCAAGTCTCCCAGTTTTC...ATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp AGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGCTTTTGGGTTCTTCATaGTGCAAGAAATGGAACGAT +
Preference number: 4 (lower is better)
Translates to: SPFTRADGSWGNRVVRGLLLGSS*CKKWND
Trigger: ATCGTTCCATTTCTTGCACCATGAAGAACCCAAAAG...CAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp GGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGAAACACCTCTACTTTTaGGTTCTTCATGGTGCAAGA +
Preference number: 4 (lower is better)
Translates to: GQPHLLLLSPFTRADGSWKHLYF*VLHGAR
Trigger: TCTTGCACCATGAAGAACCCAAAAGTAGAGGTGTTT...CCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGATCCATACTCCAGAGTaGGGATGTTCTTGCAGTGAC +
Preference number: 4 (lower is better)
Translates to: FTNRVKSIGQIRGGSQSGIHTPE*GCSCSD
Trigger: GTCACTGCAAGAACATCCCCACTCTGGAGTATGGAT...CCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp CAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGAGCATGGACCCATTCTaGAAGACATGCTGCTCATCA +
Preference number: 4 (lower is better)
Translates to: QSGPSKCGVVPGSISTMKSMDPF*KTCCSS
Trigger: TGATGAGCAGCATGTCTTCCAGAATGGGTCCATGCT...CTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp AGACACAGGGCACACCCAAATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATAGCATGGACCCATTCTaGAAGACATGCTGCTCATCA +
Preference number: 4 (lower is better)
Translates to: RHRAHPNVPMLLEVLRRNSMDPF*KTCCSS
Trigger: TGATGAGCAGCATGTCTTCCAGAATGGGTCCATGCT...ATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGTGTGCCCTGTGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp TTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGTTCCGATCACACGCATaGTTTCCTTCTGAATCTTGG +
Preference number: 4 (lower is better)
Translates to: FTNRVKSIGQIRGGSQSGFRSHA*FPSESW
Trigger: CCAAGATTCAGAAGGAAATCATGCGTGTGATCGGAA...CCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR GCA 90 bp CACAAAGTGCTATACAGTTTAGATTCCGACTCTGCAGGAACCTTGACTGAATGGTCTATACAGGTCAGCTaGACAGCTCCCCTGAACTCC +
Preference number: 4 (lower is better)
Translates to: HKVLYSLDSDSAGTLTEWSIQVS*TAPLNS
Trigger: GGAGTTCAGGGGAGCTGTGCAGCTGACCTGTATAGA...CCATTCAGTCAAGGTTCCTGCAGAGTCGGAATCTAAACTGTATAGCACTTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp AGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGTAGATCTCTTTCACTaGTTCAATGTCTGCATCAAG +
Preference number: 4 (lower is better)
Translates to: RTASLAAPESFYKGRWILVDLFH*FNVCIK
Trigger: CTTGATGCAGACATTGAAGCAGTGAAAGAGATCTAC...CAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTTGGGTTCTTCATGGTaGAAGAAATGGAACGATTCA +
Preference number: 4 (lower is better)
Translates to: SGQPHLLLLSPFTRADGSLGSSW*KKWNDS
Trigger: TGAATCGTTCCATTTCTTGCACCATGAAGAACCCAA...GGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGTTGGGTTCTTCATGGTaGAAGAAATGGAACGATTCA +
Preference number: 4 (lower is better)
Translates to: HLLLLSPFTRADGSWGNRLGSSW*KKWNDS
Trigger: TGAATCGTTCCATTTCTTGCACCATGAAGAACCCAA...CCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp AAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCTTGGGTTCTTCATGGTaGAAGAAATGGAACGATTCA +
Preference number: 4 (lower is better)
Translates to: KQGEVNWANQGWESVRAILGSSW*KKWNDS
Trigger: TGAATCGTTCCATTTCTTGCACCATGAAGAACCCAA...GATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGGCCTGGAATCCTCTGCTCTaGATACTTCATAATCTGGAC +
Preference number: 4 (lower is better)
Translates to: SGPSKCGVVPGSISTMKAWNPLL*ILHNLD
Trigger: GTCCAGATTATGAAGTATGCAGAGCAGAGGATTCCA...GGCCTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TTCTCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATGGAATCCTCTGCTCTaGATACTTCATAATCTGGAC +
Preference number: 4 (lower is better)
Translates to: FSGQPHLLLLSPFTRADGWNPLL*ILHNLD
Trigger: GTCCAGATTATGAAGTATGCAGAGCAGAGGATTCCA...TCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CTTGGGGTCCTGAGTATTAATGTTGGCATCGCCCACCTGCCCATCCTCATATACTGGAATCCTCTGCTCTaGATACTTCATAATCTGGAC +
Preference number: 4 (lower is better)
Translates to: LGVLSINVGIAHLPILIYWNPLL*ILHNLD
Trigger: GTCCAGATTATGAAGTATGCAGAGCAGAGGATTCCA...GTATATGAGGATGGGCAGGTGGGCGATGCCAACATTAATACTCAGGACCCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTAAACGTTGGAATCCTCTaGTCTGCATACTTCATAATC +
Preference number: 4 (lower is better)
Translates to: LLLSPFTRADGSWGNRVVNVGIL*SAYFII
Trigger: GATTATGAAGTATGCAGAGCAGAGGATTCCAACGTT...TACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp AGTATTAATGTTGGCATCGCCCACCTGCCCATCCTCATATACAAAGAAGAACCTAGGGGATTCCAAAGCTaGTCTACACATGGCCACCAG +
Preference number: 4 (lower is better)
Translates to: SINVGIAHLPILIYKEEPRGFQS*STHGHQ
Trigger: CTGGTGGCCATGTGTAGAGCAGCTTTGGAATCCCCT...AGGTTCTTCTTTGTATATGAGGATGGGCAGGTGGGCGATGCCAACATTAATACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CCAAATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATCACTTCACAAAGTGCCAGTTTGGTGTAGGATaGATTGACCAGCCCATTGCG +
Preference number: 4 (lower is better)
Translates to: PNVPMLLEVLRRNHFTKCQFGVG*IDQPIA
Trigger: CGCAATGGGCTGGTCAATGCATCCTACACCAAACTG...GCACTTTGTGAAGTGATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp GACACAGGGCACACCCAAATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATCTCCTTATTCGATGGCTaGAAAACCTCAATTGATGGC +
Preference number: 4 (lower is better)
Translates to: DTGHTQMFPCFWRSLDVISLFDG*KTSIDG
Trigger: GCCATCAATTGAGGTTTTCCAGCCATCGAATAAGGA...GATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGTGTGCCCTGTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp AGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAAAGATGCTTCCATTGTTaGGATGTAAACATACACAGG +
Preference number: 4 (lower is better)
Translates to: RVKSIGQIRGGSQSGPSKRCFHC*DVNIHR
Trigger: CCTGTGTATGTTTACATCCCAACAATGGAAGCATCT...TTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp GAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATGTGGCTTTTGGGTTCTTCATaGTGCAAGAAATGGAACGAT +
Preference number: 4 (lower is better)
Translates to: EVNWANQGWESVRAIQMWLLGSS*CKKWND
Trigger: ATCGTTCCATTTCTTGCACCATGAAGAACCCAAAAG...CCACATTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp CATGATTTCCTTCTGAATCTTGGGGTCCTGAGTATTAATGTTGGCATCGCCCACAAGCTGCTCTACACATaGCCACCAGCAGATCTACCA +
Preference number: 4 (lower is better)
Translates to: HDFLLNLGVLSINVGIAHKLLYT*PPADLP
Trigger: TGGTAGATCTGCTGGTGGCCATGTGTAGAGCAGCTT...GTGGGCGATGCCAACATTAATACTCAGGACCCCAAGATTCAGAAGGAAATCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp CAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGATCCAAAGGAAATACTaGAGATGGGGCTCAGGTAGA +
Preference number: 4 (lower is better)
Translates to: QSGPSKCGVVPGSISTMKIQRKY*RWGSGR
Trigger: TCTACCTGAGCCCCATCTCCAGTATTTCCTTTGGAT...CTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR GCA 90 bp CTTGGGGTCCTGAGTATTAATGTTGGCATCGCCCACCTGCCCATCCTCATATACGTAGATCTCTTTCACTaGTTCAATGTCTGCATCAAG +
Preference number: 4 (lower is better)
Translates to: LGVLSINVGIAHLPILIYVDLFH*FNVCIK
Trigger: CTTGATGCAGACATTGAAGCAGTGAAAGAGATCTAC...GTATATGAGGATGGGCAGGTGGGCGATGCCAACATTAATACTCAGGACCCCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp AGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAAAAATCATTGCTCAGATaGTTCCATTGTTGGGATGTA +
Preference number: 4 (lower is better)
Translates to: RVKSIGQIRGGSQSGPSKKSLLR*FHCWDV
Trigger: TACATCCCAACAATGGAAGCATCTGAGCAATGATTT...TTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCT
47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCAAATCATTGCTCAGATaGTTCCATTGTTGGGATGTA +
Preference number: 4 (lower is better)
Translates to: YKQGEVNWANQGWESVRAKSLLR*FHCWDV
Trigger: TACATCCCAACAATGGAAGCATCTGAGCAATGATTT...GGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp ACATGGTCAGACACAGGGCACACCCAAATGTTCCCATGCTTCTGGAGGTCCTTAAACGTTGGAATCCTCTaGTCTGCATACTTCATAATC +
Preference number: 4 (lower is better)
Translates to: TWSDTGHTQMFPCFWRSLNVGIL*SAYFII
Trigger: GATTATGAAGTATGCAGAGCAGAGGATTCCAACGTT...TAAGGACCTCCAGAAGCATGGGAACATTTGGGTGTGCCCTGTGTCTGACCATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CCAAATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATCACTTCACAAAGTGCAATTGGTGTGAGGTGTaGATGAACTTCAGCCTGCTG +
Preference number: 4 (lower is better)
Translates to: PNVPMLLEVLRRNHFTKCNWCEV*MNFSLL
Trigger: CAGCAGGCTGAAGTTCATGCACACCTCACACCAATT...GCACTTTGTGAAGTGATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCATTGGAAGGCATCCTGTaGTGTCCTTTGCCCATTCCT +
Preference number: 4 (lower is better)
Translates to: LFTNRVKSIGQIRGGSQSLEGIL*CPLPIP
Trigger: AGGAATGGGCAAAGGACAGCACAGGATGCCTTCCAA...TGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CACAAAGTGCTATACAGTTTAGATTCCGACTCTGCAGGAACCTTGACTGAATGGTTGGAAGGCATCCTGTaGTGTCCTTTGCCCATTCCT +
Preference number: 4 (lower is better)
Translates to: HKVLYSLDSDSAGTLTEWLEGIL*CPLPIP
Trigger: AGGAATGGGCAAAGGACAGCACAGGATGCCTTCCAA...CCATTCAGTCAAGGTTCCTGCAGAGTCGGAATCTAAACTGTATAGCACTTTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CACAAAGTGCTATACAGTTTAGATTCCGACTCTGCAGGAACCTTGACTGAATGGTTGGAAGGCATCCTGTaGTGTCCTTTGCCCATTCTG +
Preference number: 4 (lower is better)
Translates to: HKVLYSLDSDSAGTLTEWLEGIL*CPLPIL
Trigger: CAGAATGGGCAAAGGACAGCACAGGATGCCTTCCAA...CCATTCAGTCAAGGTTCCTGCAGAGTCGGAATCTAAACTGTATAGCACTTTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167091.3
CDS-3UTR CCA 90 bp TTCTCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGAAAACACCTCTACTTTTaGGTTCTTCATGGTGCAAGA +
Preference number: 4 (lower is better)
Translates to: FSGQPHLLLLSPFTRADGKHLYF*VLHGAR
Trigger: TCTTGCACCATGAAGAACCCAAAAGTAGAGGTGTTT...TCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp AGGTCCTTAGACGTAATCACTTCACAAAGTGCTATACAGTTTAGATTCCGACTCGAGTCTTGGGATCAGTaGGGTCCACCACAGAGGGAT +
Preference number: 4 (lower is better)
Translates to: RSLDVITSQSAIQFRFRLESWDQ*GPPQRD
Trigger: ATCCCTCTGTGGTGGACCCCACTGATCCCAAGACTC...GAGTCGGAATCTAAACTGTATAGCACTTTGTGAAGTGATTACGTCTAAGGACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp GACGTAATCACTTCACAAAGTGCTATACAGTTTAGATTCCGACTCTGCAGGAACCAGGAGGAATTGGTGTaGGGTGTGCATGAACTTCAG +
Preference number: 4 (lower is better)
Translates to: DVITSQSAIQFRFRLCRNQEELV*GVHELQ
Trigger: CTGAAGTTCATGCACACCTCACACCAATTCCTCCTG...GTTCCTGCAGAGTCGGAATCTAAACTGTATAGCACTTTGTGAAGTGATTACGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR TCA 90 bp TTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCACCCATTGCGCAGGATTaGATGCCAATTCTCAATGTG +
Preference number: 4 (lower is better)
Translates to: LFTNRVKSIGQIRGGSQSPIAQD*MPILNV
Trigger: CACATTGAGAATTGGCATTCAATCCTGCGCAATGGG...TGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TTCCCATGCTTCTGGAGGTCCTTAGACGTAATCACTTCACAAAGTGCTATACAGCTTGATGGTACCACTTaGCTTGAACCAACTGTGCCT +
Preference number: 4 (lower is better)
Translates to: FPCFWRSLDVITSQSAIQLDGTT*LEPTVP
Trigger: AGGCACAGTTGGTTCAAGGCAAGTGGTACCATCAAG...CTGTATAGCACTTTGTGAAGTGATTACGTCTAAGGACCTCCAGAAGCATGGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCTGCATCAAGCTGTaGGTGTCTATACAGGTCAGC +
Preference number: 4 (lower is better)
Translates to: CFIYKQGEVNWANQGWESVCIKL*VSIQVS
Trigger: GCTGACCTGTATAGACACCCACAGCTTGATGCAGAC...TGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp AGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAACACCTCTACTTTTaGGTTCTTCATGGTGCAAGA +
Preference number: 4 (lower is better)
Translates to: SQSGPSKCGVVPGSISTMKHLYF*VLHGAR
Trigger: TCTTGCACCATGAAGAACCCAAAAGTAGAGGTGTTT...CATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGAAACACCTCTACTTTTaGGTTCTTCATGGTGCAAGA +
Preference number: 4 (lower is better)
Translates to: FTNRVKSIGQIRGGSQSGKHLYF*VLHGAR
Trigger: TCTTGCACCATGAAGAACCCAAAAGTAGAGGTGTTT...CCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TTTATTGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGTTCCGTAGAGCTTCTTaGCTGTCCGGAACCGAGCCT +
Preference number: 4 (lower is better)
Translates to: FIVLFTNRVKSIGQIRGGFRRAS*LSGTEP
Trigger: AGGCTCGGTTCCGGACAGCCAAGAAGCTCTACGGAA...CCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACAATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAAGGAAATACTGGAGATaGGGCTCAGGTAGATGCCTT +
Preference number: 4 (lower is better)
Translates to: LFTNRVKSIGQIRGGSQSRKYWR*GSGRCL
Trigger: AAGGCATCTACCTGAGCCCCATCTCCAGTATTTCCT...TGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR CCA 90 bp TGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAATCGGGTCTGGGGGATaGTGTTCATCCTGTTGTATC +
Preference number: 4 (lower is better)
Translates to: CFIYKQGEVNWANQGWESIGSGG*CSSCCI
Trigger: GATACAACAGGATGAACACCATCCCCCAGACCCGAT...TGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR TCA 90 bp TTTATTGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGGCTGCACAGCTCCCCTaGACTCCATACAGAAATTCC +
Preference number: 4 (lower is better)
Translates to: FIVLFTNRVKSIGQIRGGAAQLP*TPYRNS
Trigger: GGAATTTCTGTATGGAGTTCAGGGGAGCTGTGCAGC...CCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACAATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TTCCCATGCTTCTGGAGGTCCTTAGACGTAATCACTTCACAAAGTGCTATACAGCTAGAAATTATCCACTaGAGAAGAGGATGGGCCAAG +
Preference number: 4 (lower is better)
Translates to: FPCFWRSLDVITSQSAIQLEIIH*RRGWAK
Trigger: CTTGGCCCATCCTCTTCTGCAGTGGATAATTTCTAG...CTGTATAGCACTTTGTGAAGTGATTACGTCTAAGGACCTCCAGAAGCATGGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAATCCATACTCCAGAGTaGGGATGTTCTTGCAGTGAC +
Preference number: 4 (lower is better)
Translates to: CFIYKQGEVNWANQGWESIHTPE*GCSCSD
Trigger: GTCACTGCAAGAACATCCCCACTCTGGAGTATGGAT...TGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp GACGTAATCACTTCACAAAGTGCTATACAGTTTAGATTCCGACTCTGCAGGAACAGCATGGACCCATTCTaGAAGACATGCTGCTCATCA +
Preference number: 4 (lower is better)
Translates to: DVITSQSAIQFRFRLCRNSMDPF*KTCCSS
Trigger: TGATGAGCAGCATGTCTTCCAGAATGGGTCCATGCT...GTTCCTGCAGAGTCGGAATCTAAACTGTATAGCACTTTGTGAAGTGATTACGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp GCACACCCAAATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATCACTTCACAAAATCATTGCTCAGATaGTTCCATTGTTGGGATGTA +
Preference number: 4 (lower is better)
Translates to: AHPNVPMLLEVLRRNHFTKSLLR*FHCWDV
Trigger: TACATCCCAACAATGGAAGCATCTGAGCAATGATTT...TGTGAAGTGATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGTGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp CCAAATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATCACTTCACAAAGTGCTTGGGTTCTTCATGGTaGAAGAAATGGAACGATTCA +
Preference number: 4 (lower is better)
Translates to: PNVPMLLEVLRRNHFTKCLGSSW*KKWNDS
Trigger: TGAATCGTTCCATTTCTTGCACCATGAAGAACCCAA...GCACTTTGTGAAGTGATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TTTATTGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGTTGGAAGGCATCCTGTaGTGTCCTTTGCCCATTCCT +
Preference number: 4 (lower is better)
Translates to: FIVLFTNRVKSIGQIRGGLEGIL*CPLPIP
Trigger: AGGAATGGGCAAAGGACAGCACAGGATGCCTTCCAA...CCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCACAAAGAAGAACCTTGTaGAGACATGGTCAGACACAG +
Preference number: 4 (lower is better)
Translates to: CFIYKQGEVNWANQGWESQRRTL*RHGQTQ
Trigger: CTGTGTCTGACCATGTCTGCACAAGGTTCTTCTTTG...TGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR GCA 90 bp TTTATTGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGTCCTGTGCTGTCCTTTaGCCATTCCTGCAGTTTGGT +
Preference number: 4 (lower is better)
Translates to: FIVLFTNRVKSIGQIRGGSCAVL*PFLQFG
Trigger: ACCAAACTGCAGGAATGGGCAAAGGACAGCACAGGA...CCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TTCCCATGCTTCTGGAGGTCCTTAGACGTAATCACTTCACAAAGTGCTATACAGTCCTTATTCGATGGCTaGAAAACCTCAATTGATGGC +
Preference number: 4 (lower is better)
Translates to: FPCFWRSLDVITSQSAIQSLFDG*KTSIDG
Trigger: GCCATCAATTGAGGTTTTCCAGCCATCGAATAAGGA...CTGTATAGCACTTTGTGAAGTGATTACGTCTAAGGACCTCCAGAAGCATGGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp TTTATTGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGACCCAAATGTTCCCATaGTTCTGGAGGTCCTTAGAC +
Preference number: 4 (lower is better)
Translates to: FIVLFTNRVKSIGQIRGGTQMFP*FWRSLD
Trigger: GTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGT...CCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACAATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR CCA 90 bp CACAAAGTGCTATACAGTTTAGATTCCGACTCTGCAGGAACCTTGACTGAATGGAGATGCTTCCATTGTTaGGATGTAAACATACACAGG +
Preference number: 4 (lower is better)
Translates to: HKVLYSLDSDSAGTLTEWRCFHC*DVNIHR
Trigger: CCTGTGTATGTTTACATCCCAACAATGGAAGCATCT...CCATTCAGTCAAGGTTCCTGCAGAGTCGGAATCTAAACTGTATAGCACTTTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TTTATTGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGGAAAACTGGGAGACTTaGGAATGGGTGAGAAGATGC +
Preference number: 4 (lower is better)
Translates to: FIVLFTNRVKSIGQIRGGENWET*EWVRRC
Trigger: GCATCTTCTCACCCATTCCCAAGTCTCCCAGTTTTC...CCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACAATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp TTTATTGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGATCCATACTCCAGAGTaGGGATGTTCTTGCAGTGAC +
Preference number: 4 (lower is better)
Translates to: FIVLFTNRVKSIGQIRGGIHTPE*GCSCSD
Trigger: GTCACTGCAAGAACATCCCCACTCTGGAGTATGGAT...CCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACAATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR GCA 90 bp GACGTAATCACTTCACAAAGTGCTATACAGTTTAGATTCCGACTCTGCAGGAACAACGTTGGAATCCTCTaGTCTGCATACTTCATAATC +
Preference number: 4 (lower is better)
Translates to: DVITSQSAIQFRFRLCRNNVGIL*SAYFII
Trigger: GATTATGAAGTATGCAGAGCAGAGGATTCCAACGTT...GTTCCTGCAGAGTCGGAATCTAAACTGTATAGCACTTTGTGAAGTGATTACGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp ATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATCACTTCACAAAGTGCTATACTTTTGGGTTCTTCATaGTGCAAGAAATGGAACGAT +
Preference number: 4 (lower is better)
Translates to: MFPCFWRSLDVITSQSAILLGSS*CKKWND
Trigger: ATCGTTCCATTTCTTGCACCATGAAGAACCCAAAAG...TATAGCACTTTGTGAAGTGATTACGTCTAAGGACCTCCAGAAGCATGGGAACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CCA 90 bp CCATTTTATTGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGATGTTCCCATGCTTCTaGAGGTCCTTAGACGTAATC +
Preference number: 4 (lower is better)
Translates to: PFYCFIYKQGEVNWANQGMFPCF*RSLDVI
Trigger: GATTACGTCTAAGGACCTCCAGAAGCATGGGAACAT...CCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACAATAAAATGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR CCA 90 bp CCATTTTATTGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGAGATGCTTCCATTGTTaGGATGTAAACATACACAGG +
Preference number: 4 (lower is better)
Translates to: PFYCFIYKQGEVNWANQGRCFHC*DVNIHR
Trigger: CCTGTGTATGTTTACATCCCAACAATGGAAGCATCT...CCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACAATAAAATGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp AGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGCGGAACCGAGCCTCCTaGGCAGGAGGGCTGCTCAGC +
Preference number: 5 (lower is better)
Translates to: SPFTRADGSWGNRVVRGLRNRAS*AGGLLS
Trigger: GCTGAGCAGCCCTCCTGCCAAGGAGGCTCGGTTCCG...CAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGCGGAACCGAGCCTCCTaGGCAGGAGGGCTGCTCAGC +
Preference number: 5 (lower is better)
Translates to: HLLLLSPFTRADGSWGNRRNRAS*AGGLLS
Trigger: GCTGAGCAGCCCTCCTGCCAAGGAGGCTCGGTTCCG...CCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS CCA 90 bp CAATGTGGGACCCATGGAAAGCAAAGGTGCTTCCGTAGAGCTTCTTaGCTGTCCGGAACCGAGCCTCCTTGGCAGGAGGGCTGCTCAGCA +
Preference number: 5 (lower is better)
Translates to: QCGTHGKQRCFRRAS*LSGTEPPWQEGCSA
Trigger: TGCTGAGCAGCCCTCCTGCCAAGGAGGCTCGGTTCCGGACAGCCAAGAAGCTCTACGGAAGCACCTTTGCTTTCCATGGGTCCCACATTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS CCA 90 bp CGGAACCGAGCCTCCTTGGCAGGAGGGCTGCTCAGCAGGAGGAATTaGTGTGAGGTGTGCATGAACTTCAGCCTGCTGAGAGGTAGTTTG +
Preference number: 5 (lower is better)
Translates to: RNRASLAGGLLSRRN*CEVCMNFSLLRGSL
Trigger: CAAACTACCTCTCAGCAGGCTGAAGTTCATGCACACCTCACACCAATTCCTCCTGCTGAGCAGCCCTCCTGCCAAGGAGGCTCGGTTCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp AGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGCGGAACCGAGCCTCCTaGGCAGGAGGGCTGCTCAGC +
Preference number: 5 (lower is better)
Translates to: SQSGPSKCGVVPGSISTMRNRAS*AGGLLS
Trigger: GCTGAGCAGCCCTCCTGCCAAGGAGGCTCGGTTCCG...CATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp AGACACAGGGCACACCCAAATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATCGGAACCGAGCCTCCTaGGCAGGAGGGCTGCTCAGC +
Preference number: 5 (lower is better)
Translates to: RHRAHPNVPMLLEVLRRNRNRAS*AGGLLS
Trigger: GCTGAGCAGCCCTCCTGCCAAGGAGGCTCGGTTCCG...ATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGTGTGCCCTGTGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCGCATTGACCAGCCCATaGCGCAGGATTGAATGCCAA +
Preference number: 5 (lower is better)
Translates to: FTRADGSWGNRVVRGLGPALTSP*RRIECQ
Trigger: TTGGCATTCAATCCTGCGCAATGGGCTGGTCAATGC...GGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCCATGGTGTTCATCCTGTaGTATCTCTGGACCAGCTCA +
Preference number: 5 (lower is better)
Translates to: LQGQMDPGVTGWYEGWGPMVFIL*YLWTSS
Trigger: TGAGCTGGTCCAGAGATACAACAGGATGAACACCAT...GGGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR CAA 90 bp CCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGGACTCTGCAGGAACCTaGACTGAATGGATCGGGTCT +
Preference number: 5 (lower is better)
Translates to: PFTRADGSWGNRVVRGLGDSAGT*TEWIGS
Trigger: AGACCCGATCCATTCAGTCAAGGTTCCTGCAGAGTC...CCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS GCA 90 bp GGCCACCAGCAGATCTACCACCTCTGCTCCTGTAGCCACTTCTTCTaGAGCTCCAGACATGACTCCCAGTGTGTAGAAGGAGAAGACGCA +
Preference number: 5 (lower is better)
Translates to: GHQQIYHLCSCSHFF*SSRHDSQCVEGEDA
Trigger: TGCGTCTTCTCCTTCTACACACTGGGAGTCATGTCTGGAGCTGCAGAAGAAGTGGCTACAGGAGCAGAGGTGGTAGATCTGCTGGTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGTCTGGTACACCCAGTTaGCCTTTCAGCATAGAGTCC +
Preference number: 5 (lower is better)
Translates to: PFTRADGSWGNRVVRGLGSGTPS*PFSIES
Trigger: GGACTCTATGCTGAAAGGCAAACTGGGTGTACCAGA...CCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCGTACAGACAGCTGGCTaGAGCATGGACCCATTCTGG +
Preference number: 5 (lower is better)
Translates to: YKQGEVNWANQGWESVRAVQTAG*SMDPFW
Trigger: CCAGAATGGGTCCATGCTCAAGCCAGCTGTCTGTAC...GGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGGCCAAGGGATCCAGCTaGTCCATCTGTTTCTTGATT +
Preference number: 5 (lower is better)
Translates to: PFTRADGSWGNRVVRGLGAKGSS*SICFLI
Trigger: AATCAAGAAACAGATGGACAAGCTGGATCCCTTGGC...CCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000214956.2
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTGCATTGACCAGCCCATaGCGCAGGATTGAATGCCAA +
Preference number: 5 (lower is better)
Translates to: QPHLLLLSPFTRADGSWGALTSP*RRIECQ
Trigger: TTGGCATTCAATCCTGCGCAATGGGCTGGTCAATGC...ACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCCATACAAAGAAGAACCTaGTGCAGACATGGTCAGACA +
Preference number: 5 (lower is better)
Translates to: LQGQMDPGVTGWYEGWGPIQRRT*CRHGQT
Trigger: TGTCTGACCATGTCTGCACAAGGTTCTTCTTTGTAT...GGGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR CAA 90 bp AGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGATCCTGTGCTGTCCTTaGCCCATTCCACTGCAGAAG +
Preference number: 5 (lower is better)
Translates to: SPFTRADGSWGNRVVRGLILCCP*PIPLQK
Trigger: CTTCTGCAGTGGAATGGGCAAAGGACAGCACAGGAT...CAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214956.2
CDS-3UTR CAA 90 bp AGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGAAAACTGGGAGACTaGGGAATGGGTGAGAAGATG +
Preference number: 5 (lower is better)
Translates to: SPFTRADGSWGNRVVRGLGKLGD*GMGEKM
Trigger: CATCTTCTCACCCATTCCCAAGTCTCCCAGTTTTCC...CAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTTCTGGTACACCCAGTTaGCCTTTCAGCATAGAGTCC +
Preference number: 5 (lower is better)
Translates to: QPHLLLLSPFTRADGSWGSGTPS*PFSIES
Trigger: GGACTCTATGCTGAAAGGCAAACTGGGTGTACCAGA...ACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp GACTCTGCAGGAACCTTGACTGAATGGATCGGGTCTGGGGGATGGTGTTCATCCTCTGGTACACCCAGTTaGCCTTTCAGCATAGAGTCC +
Preference number: 5 (lower is better)
Translates to: DSAGTLTEWIGSGGWCSSSGTPS*PFSIES
Trigger: GGACTCTATGCTGAAAGGCAAACTGGGTGTACCAGA...GGATGAACACCATCCCCCAGACCCGATCCATTCAGTCAAGGTTCCTGCAGAGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167091.3
CDS-3UTR CAA 90 bp TTCTCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATTAAAGGCCAGAGTCTaGGGATCAGTGGGGTCCACC +
Preference number: 5 (lower is better)
Translates to: FSGQPHLLLLSPFTRADGLKARV*GSVGST
Trigger: GGTGGACCCCACTGATCCCAAGACTCTGGCCTTTAA...TCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp GTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGCCCATTGCGCAGGATaGAATGCCAATTCTCAATGT +
Preference number: 5 (lower is better)
Translates to: VLLQGQMDPGVTGWYEGWAHCAG*NANSQC
Trigger: ACATTGAGAATTGGCATTCAATCCTGCGCAATGGGC...CCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGGCCCATACAAAGAAGAACCTaGTGCAGACATGGTCAGACA +
Preference number: 5 (lower is better)
Translates to: FTRADGSWGNRVVRGLGPIQRRT*CRHGQT
Trigger: TGTCTGACCATGTCTGCACAAGGTTCTTCTTTGTAT...GGGCCCCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR CAA 90 bp TCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGGCCTCGAGGAAGCTGATGTaGATGTGGAGGTCAAGGTCC +
Preference number: 5 (lower is better)
Translates to: SGPSKCGVVPGSISTMKASRKLM*MWRSRS
Trigger: GGACCTTGACCTCCACATCAACATCAGCTTCCTCGA...GGCCTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TTCTCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCGAGGAAGCTGATGTaGATGTGGAGGTCAAGGTCC +
Preference number: 5 (lower is better)
Translates to: FSGQPHLLLLSPFTRADGSRKLM*MWRSRS
Trigger: GGACCTTGACCTCCACATCAACATCAGCTTCCTCGA...TCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp AGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGGCCACTCGAGGAAGCTGATGTaGATGTGGAGGTCAAGGTCC +
Preference number: 5 (lower is better)
Translates to: RAIQMWSSSWINLHHEGHSRKLM*MWRSRS
Trigger: GGACCTTGACCTCCACATCAACATCAGCTTCCTCGA...GTGGCCTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGATGGTACCACTTGCCTaGAACCAACTGTGCCTCTTC +
Preference number: 5 (lower is better)
Translates to: LLLLSPFTRADGSWGNRVMVPLA*NQLCLF
Trigger: GAAGAGGCACAGTTGGTTCAAGGCAAGTGGTACCAT...CACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTAATGGTACCACTTGCCTaGAACCAACTGTGCCTCTTC +
Preference number: 5 (lower is better)
Translates to: LLLSPFTRADGSWGNRVVMVPLA*NQLCLF
Trigger: GAAGAGGCACAGTTGGTTCAAGGCAAGTGGTACCAT...TACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAATGGTACCACTTGCCTaGAACCAACTGTGCCTCTTC +
Preference number: 5 (lower is better)
Translates to: LLSPFTRADGSWGNRVVRMVPLA*NQLCLF
Trigger: GAAGAGGCACAGTTGGTTCAAGGCAAGTGGTACCAT...TCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp AGTTTAGATTCCGACTCTGCAGGAACCTTGACTGAATGGATCGGGTCTGGGGGACCAGCTCGGAACTTCTaGATGGTACCACTTGCCTTG +
Preference number: 5 (lower is better)
Translates to: SLDSDSAGTLTEWIGSGGPARNF*MVPLAL
Trigger: CAAGGCAAGTGGTACCATCAAGAAGTTCCGAGCTGG...TCCCCCAGACCCGATCCATTCAGTCAAGGTTCCTGCAGAGTCGGAATCTAAACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp AAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCGGAAAACTGGGAGACTaGGGAATGGGTGAGAAGATG +
Preference number: 5 (lower is better)
Translates to: KQGEVNWANQGWESVRAIGKLGD*GMGEKM
Trigger: CATCTTCTCACCCATTCCCAAGTCTCCCAGTTTTCC...GATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGTCTGGTACACCCAGTTaGCCTTTCAGCATAGAGTCC +
Preference number: 5 (lower is better)
Translates to: LLLLSPFTRADGSWGNRVSGTPS*PFSIES
Trigger: GGACTCTATGCTGAAAGGCAAACTGGGTGTACCAGA...CACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp GTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGCAAACACCTCTACTTTaGGGTTCTTCATGGTGCAAG +
Preference number: 5 (lower is better)
Translates to: VLLQGQMDPGVTGWYEGWQTPLL*GSSWCK
Trigger: CTTGCACCATGAAGAACCCAAAAGTAGAGGTGTTTG...CCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp AGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGGTACAGACAGCTGGCTaGAGCATGGACCCATTCTGG +
Preference number: 5 (lower is better)
Translates to: SQSGPSKCGVVPGSISTMVQTAG*SMDPFW
Trigger: CCAGAATGGGTCCATGCTCAAGCCAGCTGTCTGTAC...CATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp GAGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGTACAGACAGCTGGCTaGAGCATGGACCCATTCTGG +
Preference number: 5 (lower is better)
Translates to: ESVRAIQMWSSSWINLHHVQTAG*SMDPFW
Trigger: CCAGAATGGGTCCATGCTCAAGCCAGCTGTCTGTAC...ATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp AGACACAGGGCACACCCAAATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATGTACAGACAGCTGGCTaGAGCATGGACCCATTCTGG +
Preference number: 5 (lower is better)
Translates to: RHRAHPNVPMLLEVLRRNVQTAG*SMDPFW
Trigger: CCAGAATGGGTCCATGCTCAAGCCAGCTGTCTGTAC...ATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGTGTGCCCTGTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp AGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGTTAAAGGCCAGAGTCTaGGGATCAGTGGGGTCCACC +
Preference number: 5 (lower is better)
Translates to: SQSGPSKCGVVPGSISTMLKARV*GSVGST
Trigger: GGTGGACCCCACTGATCCCAAGACTCTGGCCTTTAA...CATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp GAGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATTTAAAGGCCAGAGTCTaGGGATCAGTGGGGTCCACC +
Preference number: 5 (lower is better)
Translates to: ESVRAIQMWSSSWINLHHLKARV*GSVGST
Trigger: GGTGGACCCCACTGATCCCAAGACTCTGGCCTTTAA...ATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTGCCAAGGGATCCAGCTaGTCCATCTGTTTCTTGATT +
Preference number: 5 (lower is better)
Translates to: QPHLLLLSPFTRADGSWGAKGSS*SICFLI
Trigger: AATCAAGAAACAGATGGACAAGCTGGATCCCTTGGC...ACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000214956.2
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGATCCTGTGCTGTCCTTaGCCCATTCCTGAGTATCCA +
Preference number: 5 (lower is better)
Translates to: HLLLLSPFTRADGSWGNRILCCP*PIPEYP
Trigger: TGGATACTCAGGAATGGGCAAAGGACAGCACAGGAT...CCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR CAA 90 bp TCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCATCCTGTGCTGTCCTTaGCCCATTCCTGAGTATCCA +
Preference number: 5 (lower is better)
Translates to: SGQPHLLLLSPFTRADGSILCCP*PIPEYP
Trigger: TGGATACTCAGGAATGGGCAAAGGACAGCACAGGAT...GGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS GCA 90 bp TTCCTGAGTATCCAAAGGAAATACTGGAGATGGGGCTCAGGTAGATaGCTTTGCCATAGGCTGCTCCATGCAGCTGCAGTTTGGTGTAGG +
Preference number: 5 (lower is better)
Translates to: FLSIQRKYWRWGSGR*LCHRLLHAAAVWCR
Trigger: CCTACACCAAACTGCAGCTGCATGGAGCAGCCTATGGCAAAGGCATCTACCTGAGCCCCATCTCCAGTATTTCCTTTGGATACTCAGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR CAA 90 bp GTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGGCTCAGATGCTTCCATaGTTGGGATGTAAACATACA +
Preference number: 5 (lower is better)
Translates to: VLLQGQMDPGVTGWYEGWAQMLP*LGCKHT
Trigger: TGTATGTTTACATCCCAACAATGGAAGCATCTGAGC...CCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp AGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGCCAGCTCGGAACTTCTaGATGGTACCACTTGCCTTG +
Preference number: 5 (lower is better)
Translates to: SQSGPSKCGVVPGSISTMPARNF*MVPLAL
Trigger: CAAGGCAAGTGGTACCATCAAGAAGTTCCGAGCTGG...CATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp GTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGGGCTGGACAATGTGTGACCTGTaGCTAGAAATTATCCACTGC +
Preference number: 5 (lower is better)
Translates to: VLLQGQMDPGVTGWYEGWTMCDL*LEIIHC
Trigger: GCAGTGGATAATTTCTAGCAACAGGTCACACATTGT...CCAGCCCTCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp GGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATGCTGCTGAGAGGTAGTTaGACAATGTGTGACCTGTTG +
Preference number: 5 (lower is better)
Translates to: GEVNWANQGWESVRAIQMLLRGS*TMCDLL
Trigger: CAACAGGTCACACATTGTCAAACTACCTCTCAGCAG...CATTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGCCCATTGCGCAGGATaGAATGCCAATTCTCAATGT +
Preference number: 5 (lower is better)
Translates to: LLSPFTRADGSWGNRVVRAHCAG*NANSQC
Trigger: ACATTGAGAATTGGCATTCAATCCTGCGCAATGGGC...TCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TCAGGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCATGGTGTTCATCCTGTaGTATCTCTGGACCAGCTCA +
Preference number: 5 (lower is better)
Translates to: SGQPHLLLLSPFTRADGSMVFIL*YLWTSS
Trigger: TGAGCTGGTCCAGAGATACAACAGGATGAACACCAT...GGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS-3UTR CAA 90 bp AGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGGACTCTGCAGGAACCTaGACTGAATGGATCGGGTCT +
Preference number: 5 (lower is better)
Translates to: SQSGPSKCGVVPGSISTMDSAGT*TEWIGS
Trigger: AGACCCGATCCATTCAGTCAAGGTTCCTGCAGAGTC...CATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS-3UTR CAA 90 bp GAGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATATCCTGTGCTGTCCTTaGCCCATTCCTGCAGTTTGG +
Preference number: 5 (lower is better)
Translates to: ESVRAIQMWSSSWINLHHILCCP*PIPAVW
Trigger: CCAAACTGCAGGAATGGGCAAAGGACAGCACAGGAT...ATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216351.2
CDS GCA 90 bp CCAGCTCGGAACTTCTTGATGGTACCACTTGCCTTGAACCAACTGTaGCTCTTCTCCTGCTGGGTCTTCAAGAAATCATTGCTCAGATGC +
Preference number: 5 (lower is better)
Translates to: PARNFLMVPLALNQL*LFSCWVFKKSLLRC
Trigger: GCATCTGAGCAATGATTTCTTGAAGACCCAGCAGGAGAAGAGGCACAGTTGGTTCAAGGCAAGTGGTACCATCAAGAAGTTCCGAGCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp GGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGCTCAGATGCTTCCATaGTTGGGATGTAAACATACA +
Preference number: 5 (lower is better)
Translates to: GQPHLLLLSPFTRADGSWAQMLP*LGCKHT
Trigger: TGTATGTTTACATCCCAACAATGGAAGCATCTGAGC...CCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp AGACACAGGGCACACCCAAATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATATGGTACCACTTGCCTaGAACCAACTGTGCCTCTTC +
Preference number: 5 (lower is better)
Translates to: RHRAHPNVPMLLEVLRRNMVPLA*NQLCLF
Trigger: GAAGAGGCACAGTTGGTTCAAGGCAAGTGGTACCAT...ATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGTGTGCCCTGTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp AGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGGGAAAACTGGGAGACTaGGGAATGGGTGAGAAGATG +
Preference number: 5 (lower is better)
Translates to: SQSGPSKCGVVPGSISTMGKLGD*GMGEKM
Trigger: CATCTTCTCACCCATTCCCAAGTCTCCCAGTTTTCC...CATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGCAAACACCTCTACTTTaGGGTTCTTCATGGTGCAAG +
Preference number: 5 (lower is better)
Translates to: LLLLSPFTRADGSWGNRVQTPLL*GSSWCK
Trigger: CTTGCACCATGAAGAACCCAAAAGTAGAGGTGTTTG...CACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCCAAACACCTCTACTTTaGGGTTCTTCATGGTGCAAG +
Preference number: 5 (lower is better)
Translates to: YKQGEVNWANQGWESVRAQTPLL*GSSWCK
Trigger: CTTGCACCATGAAGAACCCAAAAGTAGAGGTGTTTG...GGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTACAATGTGTGACCTGTaGCTAGAAATTATCCACTGC +
Preference number: 5 (lower is better)
Translates to: QPHLLLLSPFTRADGSWGTMCDL*LEIIHC
Trigger: GCAGTGGATAATTTCTAGCAACAGGTCACACATTGT...ACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGGCCCTGCTGAGAGGTAGTTaGACAATGTGTGACCTGTTG +
Preference number: 5 (lower is better)
Translates to: SGPSKCGVVPGSISTMKALLRGS*TMCDLL
Trigger: CAACAGGTCACACATTGTCAAACTACCTCTCAGCAG...GGCCTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp GGACAGCCTCACTTGCTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGATACAAAGAAGAACCTaGTGCAGACATGGTCAGACA +
Preference number: 5 (lower is better)
Translates to: GQPHLLLLSPFTRADGSWIQRRT*CRHGQT
Trigger: TGTCTGACCATGTCTGCACAAGGTTCTTCTTTGTAT...CCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAGCAAGTGAGGCTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000214956.2
CDS CCA 90 bp CTCACTGTAGATCTCTTTCACTGCTTCAATGTCTGCATCAAGCTGTaGGTGTCTATACAGGTCAGCTGCACAGCTCCCCTGAACTCCATA +
Preference number: 5 (lower is better)
Translates to: LTVDLFHCFNVCIKL*VSIQVSCTAPLNSI
Trigger: TATGGAGTTCAGGGGAGCTGTGCAGCTGACCTGTATAGACACCCACAGCTTGATGCAGACATTGAAGCAGTGAAAGAGATCTACAGTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS CCA 90 bp GGTGCAAGAAATGGAACGATTCATAAGGCGTCCAACTCGGAGCTCTaGTACACCCAGTTTGCCTTTCAGCATAGAGTCCTGTATGATAGG +
Preference number: 5 (lower is better)
Translates to: GARNGTIHKASNSEL*YTQFAFQHRVLYDR
Trigger: CCTATCATACAGGACTCTATGCTGAAAGGCAAACTGGGTGTACCAGAGCTCCGAGTTGGACGCCTTATGAATCGTTCCATTTCTTGCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGGCTGGAAAACCTCAATaGATGGCTCTGGTCCATCAA +
Preference number: 5 (lower is better)
Translates to: FTNRVKSIGQIRGGSQSGAGKPQ*MALVHQ
Trigger: TTGATGGACCAGAGCCATCAATTGAGGTTTTCCAGC...CCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp GGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATGGCTCAGATGCTTCCATaGTTGGGATGTAAACATACA +
Preference number: 5 (lower is better)
Translates to: GEVNWANQGWESVRAIQMAQMLP*LGCKHT
Trigger: TGTATGTTTACATCCCAACAATGGAAGCATCTGAGC...CATTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCATTAAAGGCCAGAGTCTaGGGATCAGTGGGGTCCACC +
Preference number: 5 (lower is better)
Translates to: LFTNRVKSIGQIRGGSQSLKARV*GSVGST
Trigger: GGTGGACCCCACTGATCCCAAGACTCTGGCCTTTAA...TGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp GAGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGCCAAGGGATCCAGCTaGTCCATCTGTTTCTTGATT +
Preference number: 5 (lower is better)
Translates to: ESVRAIQMWSSSWINLHHAKGSS*SICFLI
Trigger: AATCAAGAAACAGATGGACAAGCTGGATCCCTTGGC...ATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp ACAGGGCACACCCAAATGTTCCCATGCTTCTGGAGGTCCTTAGACGTAATCACTGCCAAGGGATCCAGCTaGTCCATCTGTTTCTTGATT +
Preference number: 5 (lower is better)
Translates to: TGHTQMFPCFWRSLDVITAKGSS*SICFLI
Trigger: AATCAAGAAACAGATGGACAAGCTGGATCCCTTGGC...AGTGATTACGTCTAAGGACCTCCAGAAGCATGGGAACATTTGGGTGTGCCCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp GAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGCCATCCAAATGTGGACAATGTGTGACCTGTaGCTAGAAATTATCCACTGC +
Preference number: 5 (lower is better)
Translates to: EVNWANQGWESVRAIQMWTMCDL*LEIIHC
Trigger: GCAGTGGATAATTTCTAGCAACAGGTCACACATTGT...CCACATTTGGATGGCCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CTGCTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTAACAATGTGTGACCTGTaGCTAGAAATTATCCACTGC +
Preference number: 5 (lower is better)
Translates to: LLLSPFTRADGSWGNRVVTMCDL*LEIIHC
Trigger: GCAGTGGATAATTTCTAGCAACAGGTCACACATTGT...TACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CATGATTTCCTTCTGAATCTTGGGGTCCTGAGTATTAATGTTGGCATCGCCCACGCATTGACCAGCCCATaGCGCAGGATTGAATGCCAA +
Preference number: 5 (lower is better)
Translates to: HDFLLNLGVLSINVGIAHALTSP*RRIECQ
Trigger: TTGGCATTCAATCCTGCGCAATGGGCTGGTCAATGC...GTGGGCGATGCCAACATTAATACTCAGGACCCCAAGATTCAGAAGGAAATCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CTCCTGAGTCCTTTTACAAGGGCAGATGGATCCTGGGGTAACAGGGTGGTACGAGTCTTCAAGAAATCATaGCTCAGATGCTTCCATTGT +
Preference number: 5 (lower is better)
Translates to: LLSPFTRADGSWGNRVVRVFKKS*LRCFHC
Trigger: ACAATGGAAGCATCTGAGCAATGATTTCTTGAAGAC...TCGTACCACCCTGTTACCCCAGGATCCATCTGCCCTTGTAAAAGGACTCAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS GCA 90 bp TTCTTGATGGTACCACTTGCCTTGAACCAACTGTGCCTCTTCTCCTaGTGGGTCTTCAAGAAATCATTGCTCAGATGCTTCCATTGTTGG +
Preference number: 5 (lower is better)
Translates to: FLMVPLALNQLCLFS*WVFKKSLLRCFHCW
Trigger: CCAACAATGGAAGCATCTGAGCAATGATTTCTTGAAGACCCAGCAGGAGAAGAGGCACAGTTGGTTCAAGGCAAGTGGTACCATCAAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS CCA 90 bp TTGATGGTACCACTTGCCTTGAACCAACTGTGCCTCTTCTCCTGCTaGGTCTTCAAGAAATCATTGCTCAGATGCTTCCATTGTTGGGAT +
Preference number: 5 (lower is better)
Translates to: LMVPLALNQLCLFSC*VFKKSLLRCFHCWD
Trigger: ATCCCAACAATGGAAGCATCTGAGCAATGATTTCTTGAAGACCCAGCAGGAGAAGAGGCACAGTTGGTTCAAGGCAAGTGGTACCATCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGAAGGCTCAGATGCTTCCATaGTTGGGATGTAAACATACA +
Preference number: 5 (lower is better)
Translates to: QSGPSKCGVVPGSISTMKAQMLP*LGCKHT
Trigger: TGTATGTTTACATCCCAACAATGGAAGCATCTGAGC...CTTCATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp GACGTAATCACTTCACAAAGTGCTATACAGTTTAGATTCCGACTCTGCAGGAACCCAGCTCGGAACTTCTaGATGGTACCACTTGCCTTG +
Preference number: 5 (lower is better)
Translates to: DVITSQSAIQFRFRLCRNPARNF*MVPLAL
Trigger: CAAGGCAAGTGGTACCATCAAGAAGTTCCGAGCTGG...GTTCCTGCAGAGTCGGAATCTAAACTGTATAGCACTTTGTGAAGTGATTACGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGAAAACTGGGAGACTaGGGAATGGGTGAGAAGATG +
Preference number: 5 (lower is better)
Translates to: LFTNRVKSIGQIRGGSQSGKLGD*GMGEKM
Trigger: CATCTTCTCACCCATTCCCAAGTCTCCCAGTTTTCC...TGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGACTCTGCAGGAACCTaGACTGAATGGATCGGGTCT +
Preference number: 5 (lower is better)
Translates to: CFIYKQGEVNWANQGWESDSAGT*TEWIGS
Trigger: AGACCCGATCCATTCAGTCAAGGTTCCTGCAGAGTC...TGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS GCA 90 bp ATATTCTCTGATGGACACGGAGTTCTCACTGTAGATCTCTTTCACTaGTTCAATGTCTGCATCAAGCTGTGGGTGTCTATACAGGTCAGC +
Preference number: 5 (lower is better)
Translates to: IFSDGHGVLTVDLFH*FNVCIKLWVSIQVS
Trigger: GCTGACCTGTATAGACACCCACAGCTTGATGCAGACATTGAAGCAGTGAAAGAGATCTACAGTGAGAACTCCGTGTCCATCAGAGAATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS CCA 90 bp TTCCAAGCTGTAGATACTTCCTCATCGAGGAAGCTGATGTTGATGTaGAGGTCAAGGTCCACGTCATCGATAGTTCCATATTCTCTGATG +
Preference number: 5 (lower is better)
Translates to: FQAVDTSSSRKLMLM*RSRSTSSIVPYSLM
Trigger: CATCAGAGAATATGGAACTATCGATGACGTGGACCTTGACCTCCACATCAACATCAGCTTCCTCGATGAGGAAGTATCTACAGCTTGGAA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp GAGTCAGTCAGGGCCATCCAAATGTGGAGTAGTTCCTGGATCAATCTCCACCATGTCTTCAAGAAATCATaGCTCAGATGCTTCCATTGT +
Preference number: 5 (lower is better)
Translates to: ESVRAIQMWSSSWINLHHVFKKS*LRCFHC
Trigger: ACAATGGAAGCATCTGAGCAATGATTTCTTGAAGAC...ATGGTGGAGATTGATCCAGGAACTACTCCACATTTGGATGGCCCTGACTGACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGGGGTCTTCAAGAAATCATaGCTCAGATGCTTCCATTGT +
Preference number: 5 (lower is better)
Translates to: FTNRVKSIGQIRGGSQSGVFKKS*LRCFHC
Trigger: ACAATGGAAGCATCTGAGCAATGATTTCTTGAAGAC...CCCTGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCACTGCTGAGAGGTAGTTaGACAATGTGTGACCTGTTG +
Preference number: 5 (lower is better)
Translates to: LFTNRVKSIGQIRGGSQSLLRGS*TMCDLL
Trigger: CAACAGGTCACACATTGTCAAACTACCTCTCAGCAG...TGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCAGCCCATTGCGCAGGATaGAATGCCAATTCTCAATGT +
Preference number: 5 (lower is better)
Translates to: LFTNRVKSIGQIRGGSQSAHCAG*NANSQC
Trigger: ACATTGAGAATTGGCATTCAATCCTGCGCAATGGGC...TGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TTCCCATGCTTCTGGAGGTCCTTAGACGTAATCACTTCACAAAGTGCTATACAGATCCTGTGCTGTCCTTaGCCCATTCTGGAAAGCAAA +
Preference number: 5 (lower is better)
Translates to: FPCFWRSLDVITSQSAIQILCCP*PILESK
Trigger: TTTGCTTTCCAGAATGGGCAAAGGACAGCACAGGAT...CTGTATAGCACTTTGTGAAGTGATTACGTCTAAGGACCTCCAGAAGCATGGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167091.3
CDS-3UTR CAA 90 bp TTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGAGTCAGTCACAAACACCTCTACTTTaGGGTTCTTCATGGTGCAAG +
Preference number: 5 (lower is better)
Translates to: LFTNRVKSIGQIRGGSQSQTPLL*GSSWCK
Trigger: CTTGCACCATGAAGAACCCAAAAGTAGAGGTGTTTG...TGACTGACTCCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp GACGTAATCACTTCACAAAGTGCTATACAGTTTAGATTCCGACTCTGCAGGAACGCCAAGGGATCCAGCTaGTCCATCTGTTTCTTGATT +
Preference number: 5 (lower is better)
Translates to: DVITSQSAIQFRFRLCRNAKGSS*SICFLI
Trigger: AATCAAGAAACAGATGGACAAGCTGGATCCCTTGGC...GTTCCTGCAGAGTCGGAATCTAAACTGTATAGCACTTTGTGAAGTGATTACGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CCATTTTATTGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTCGAGGAAGCTGATGTaGATGTGGAGGTCAAGGTCC +
Preference number: 5 (lower is better)
Translates to: PFYCFIYKQGEVNWANQGSRKLM*MWRSRS
Trigger: GGACCTTGACCTCCACATCAACATCAGCTTCCTCGA...CCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACAATAAAATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CCATTTTATTGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGCCAGCTCGGAACTTCTaGATGGTACCACTTGCCTTG +
Preference number: 5 (lower is better)
Translates to: PFYCFIYKQGEVNWANQGPARNF*MVPLAL
Trigger: CAAGGCAAGTGGTACCATCAAGAAGTTCCGAGCTGG...CCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACAATAAAATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp CCATTTTATTGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGCTGCTGAGAGGTAGTTaGACAATGTGTGACCTGTTG +
Preference number: 5 (lower is better)
Translates to: PFYCFIYKQGEVNWANQGLLRGS*TMCDLL
Trigger: CAACAGGTCACACATTGTCAAACTACCTCTCAGCAG...CCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACAATAAAATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS-3UTR CAA 90 bp TTTATTGTTTTATTTACAAACAGGGTGAAGTCAATTGGGCAAATCAGGGGTGGGGTCTTCAAGAAATCATaGCTCAGATGCTTCCATTGT +
Preference number: 5 (lower is better)
Translates to: FIVLFTNRVKSIGQIRGGVFKKS*LRCFHC
Trigger: ACAATGGAAGCATCTGAGCAATGATTTCTTGAAGAC...CCCACCCCTGATTTGCCCAATTGACTTCACCCTGTTTGTAAATAAAACAATAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS CCA 72 bp CGTAGAGCTTCTTGGCTGTCCGGAACCGAGCCTCCTTaGCAGGAGGGCTGCTCAGCAGGAGGAATTGGTGTG +
Preference number: 6 (lower is better)
Translates to: RRASWLSGTEPP*QEGCSAGGIGV
Trigger: CACACCAATTCCTCCTGCTGAGCAGCCCTCCTGCCAAGGAGGCTCGGTTCCGGACAGCCAAGAAGCTCTACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS CAA 72 bp AGGCCAGCTCGGAACTTCTTGATGGTACCACTTGCCTaGAACCAACTGTGCCTCTTCTCCTGCTGGGTCTTC +
Preference number: 6 (lower is better)
Translates to: RPARNFLMVPLA*NQLCLFSCWVF
Trigger: GAAGACCCAGCAGGAGAAGAGGCACAGTTGGTTCAAGGCAAGTGGTACCATCAAGAAGTTCCGAGCTGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS CAA 90 bp GACTTGGGAATGGGTGAGAAGATGCTGAGGCCAGCTCGGAACTTCTaGATGGTACCACTTGCCTTGAACCAACTGTGCCTCTTCTCCTGC +
Preference number: 6 (lower is better)
Translates to: DLGMGEKMLRPARNF*MVPLALNQLCLFSC
Trigger: GCAGGAGAAGAGGCACAGTTGGTTCAAGGCAAGTGGTACCATCAAGAAGTTCCGAGCTGGCCTCAGCATCTTCTCACCCATTCCCAAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS GCA 72 bp AGGAAATACTGGAGATGGGGCTCAGGTAGATGCCTTTaGCATAGGCTGCTCCATGCAGCTGCAGTTTGGTGT +
Preference number: 6 (lower is better)
Translates to: RKYWRWGSGRCL*HRLLHAAAVWC
Trigger: ACACCAAACTGCAGCTGCATGGAGCAGCCTATGGCAAAGGCATCTACCTGAGCCCCATCTCCAGTATTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS CCA 72 bp TGTGCTGTCCTTTGCCCATTCCACTGCAGAAGAGGATaGGCCAAGGGATCCAGCTTGTCCATCTGTTTCTTG +
Preference number: 6 (lower is better)
Translates to: CAVLCPFHCRRG*AKGSSLSICFL
Trigger: CAAGAAACAGATGGACAAGCTGGATCCCTTGGCCCATCCTCTTCTGCAGTGGAATGGGCAAAGGACAGCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214956.2
CDS CAA 72 bp ATGGGTGAGAAGATGCTGAGGCCAGCTCGGAACTTCTaGATGGTACCACTTGCCTTGAACCAACTGTGCCTC +
Preference number: 6 (lower is better)
Translates to: MGEKMLRPARNF*MVPLALNQLCL
Trigger: GAGGCACAGTTGGTTCAAGGCAAGTGGTACCATCAAGAAGTTCCGAGCTGGCCTCAGCATCTTCTCACCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS TCA 72 bp GGTGTAGGATGCATTGACCAGCCCATTGCGCAGGATTaGATGCCAATTCTCAATGTGGGACCCATGGAAAGC +
Preference number: 6 (lower is better)
Translates to: GVGCIDQPIAQD*MPILNVGPMES
Trigger: GCTTTCCATGGGTCCCACATTGAGAATTGGCATTCAATCCTGCGCAATGGGCTGGTCAATGCATCCTACACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000216351.2
CDS TCA 72 bp CTGCTCCATGCAGCTGCAGTTTGGTGTAGGATGCATTaGCCAGCCCATTGCGCAGGATTGAATGCCAATTCT +
Preference number: 6 (lower is better)
Translates to: LLHAAAVWCRMH*PAHCAGLNANS
Trigger: AGAATTGGCATTCAATCCTGCGCAATGGGCTGGTCAATGCATCCTACACCAAACTGCAGCTGCATGGAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS GCA 72 bp ATCCAAAGGAAATACTGGAGATGGGGCTCAGGTAGATaGCTTTGCCATAGGCTGCTCCATGCAGCTGCAGTT +
Preference number: 6 (lower is better)
Translates to: IQRKYWRWGSGR*LCHRLLHAAAV
Trigger: AACTGCAGCTGCATGGAGCAGCCTATGGCAAAGGCATCTACCTGAGCCCCATCTCCAGTATTTCCTTTGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS CAA 90 bp AAGATGCTGAGGCCAGCTCGGAACTTCTTGATGGTACCACTTGCCTaGAACCAACTGTGCCTCTTCTCCTGCTGGGTCTTCAAGAAATCA +
Preference number: 6 (lower is better)
Translates to: KMLRPARNFLMVPLA*NQLCLFSCWVFKKS
Trigger: TGATTTCTTGAAGACCCAGCAGGAGAAGAGGCACAGTTGGTTCAAGGCAAGTGGTACCATCAAGAAGTTCCGAGCTGGCCTCAGCATCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS CCA 72 bp AATGGAACGATTCATAAGGCGTCCAACTCGGAGCTCTaGTACACCCAGTTTGCCTTTCAGCATAGAGTCCTG +
Preference number: 6 (lower is better)
Translates to: NGTIHKASNSEL*YTQFAFQHRVL
Trigger: CAGGACTCTATGCTGAAAGGCAAACTGGGTGTACCAGAGCTCCGAGTTGGACGCCTTATGAATCGTTCCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS CCA 72 bp GTCCTTTGCCCATTCCTGAGTATCCAAAGGAAATACTaGAGATGGGGCTCAGGTAGATGCCTTTGCCATAGG +
Preference number: 6 (lower is better)
Translates to: VLCPFLSIQRKY*RWGSGRCLCHR
Trigger: CCTATGGCAAAGGCATCTACCTGAGCCCCATCTCCAGTATTTCCTTTGGATACTCAGGAATGGGCAAAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
CDS GCA 72 bp GTACCACTTGCCTTGAACCAACTGTGCCTCTTCTCCTaGTGGGTCTTCAAGAAATCATTGCTCAGATGCTTC +
Preference number: 6 (lower is better)
Translates to: VPLALNQLCLFS*WVFKKSLLRCF
Trigger: GAAGCATCTGAGCAATGATTTCTTGAAGACCCAGCAGGAGAAGAGGCACAGTTGGTTCAAGGCAAGTGGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS CCA 72 bp GACCTGTTGCTAGAAATTATCCACTGCAGAAGAGGATaGGCCAAGGGATCCAGCTTGTCCATCTGTTTCTTG +
Preference number: 6 (lower is better)
Translates to: DLLLEIIHCRRG*AKGSSLSICFL
Trigger: CAAGAAACAGATGGACAAGCTGGATCCCTTGGCCCATCCTCTTCTGCAGTGGATAATTTCTAGCAACAGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS CAA 72 bp CAAGCTGTAGATACTTCCTCATCGAGGAAGCTGATGTaGATGTGGAGGTCAAGGTCCACGTCATCGATAGTT +
Preference number: 6 (lower is better)
Translates to: QAVDTSSSRKLM*MWRSRSTSSIV
Trigger: AACTATCGATGACGTGGACCTTGACCTCCACATCAACATCAGCTTCCTCGATGAGGAAGTATCTACAGCTTG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS CAA 72 bp CAAACCCTTCCTTATTCGATGGCTGGAAAACCTCAATaGATGGCTCTGGTCCATCAAGGTACTGAGAGAGAG +
Preference number: 6 (lower is better)
Translates to: QTLPYSMAGKPQ*MALVHQGTERE
Trigger: CTCTCTCTCAGTACCTTGATGGACCAGAGCCATCAATTGAGGTTTTCCAGCCATCGAATAAGGAAGGGTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS CAA 72 bp ATAAGGCGTCCAACTCGGAGCTCTGGTACACCCAGTTaGCCTTTCAGCATAGAGTCCTGTATGATAGGAAAA +
Preference number: 6 (lower is better)
Translates to: IRRPTRSSGTPS*PFSIESCMIGK
Trigger: TTTTCCTATCATACAGGACTCTATGCTGAAAGGCAAACTGGGTGTACCAGAGCTCCGAGTTGGACGCCTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS TCA 72 bp AAACCCTTCCTTATTCGATGGCTGGAAAACCTCAATTaGTGGCTCTGGTCCATCAAGGTACTGAGAGAGAGA +
Preference number: 6 (lower is better)
Translates to: KPFLIRWLENLN*WLWSIKVLRER
Trigger: TCTCTCTCTCAGTACCTTGATGGACCAGAGCCATCAATTGAGGTTTTCCAGCCATCGAATAAGGAAGGGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS GCA 72 bp GATGGACACGGAGTTCTCACTGTAGATCTCTTTCACTaGTTCAATGTCTGCATCAAGCTGTGGGTGTCTATA +
Preference number: 6 (lower is better)
Translates to: DGHGVLTVDLFH*FNVCIKLWVSI
Trigger: TATAGACACCCACAGCTTGATGCAGACATTGAAGCAGTGAAAGAGATCTACAGTGAGAACTCCGTGTCCATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS GCA 72 bp AACTTCTTGATGGTACCACTTGCCTTGAACCAACTGTaGCTCTTCTCCTGCTGGGTCTTCAAGAAATCATTG +
Preference number: 6 (lower is better)
Translates to: NFLMVPLALNQL*LFSCWVFKKSL
Trigger: CAATGATTTCTTGAAGACCCAGCAGGAGAAGAGGCACAGTTGGTTCAAGGCAAGTGGTACCATCAAGAAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS CCA 72 bp GTAGATACTTCCTCATCGAGGAAGCTGATGTTGATGTaGAGGTCAAGGTCCACGTCATCGATAGTTCCATAT +
Preference number: 6 (lower is better)
Translates to: VDTSSSRKLMLM*RSRSTSSIVPY
Trigger: ATATGGAACTATCGATGACGTGGACCTTGACCTCCACATCAACATCAGCTTCCTCGATGAGGAAGTATCTAC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS CAA 90 bp TTGAACCAACTGTGCCTCTTCTCCTGCTGGGTCTTCAAGAAATCATaGCTCAGATGCTTCCATTGTTGGGATGTAAACATACACAGGATT +
Preference number: 6 (lower is better)
Translates to: LNQLCLFSCWVFKKS*LRCFHCWDVNIHRI
Trigger: AATCCTGTGTATGTTTACATCCCAACAATGGAAGCATCTGAGCAATGATTTCTTGAAGACCCAGCAGGAGAAGAGGCACAGTTGGTTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS GCA 72 bp TTCTCCTGCTGGGTCTTCAAGAAATCATTGCTCAGATaGTTCCATTGTTGGGATGTAAACATACACAGGATT +
Preference number: 6 (lower is better)
Translates to: FSCWVFKKSLLR*FHCWDVNIHRI
Trigger: AATCCTGTGTATGTTTACATCCCAACAATGGAAGCATCTGAGCAATGATTTCTTGAAGACCCAGCAGGAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2
CDS GCA 72 bp CAAACCACACAGTACTCATTTAACGTTGGAATCCTCTaGTCTGCATACTTCATAATCTGGACAAGGAATCCA +
Preference number: 6 (lower is better)
Translates to: QTTQYSFNVGIL*SAYFIIWTRNP
Trigger: TGGATTCCTTGTCCAGATTATGAAGTATGCAGAGCAGAGGATTCCAACGTTAAATGAGTACTGTGTGGTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026267.16
ENSMUST00000050483.15
ENSMUST00000167091.3
ENSMUST00000216351.2