RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PARP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036023

Ensembl transcript IDs: ENSMUST00000036126.7, ENSMUST00000227810.2

Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGATGGAGAGTCCAAAGTCATGAGGGATCCTGGTGTAGAATTCATTaGACGCTTCAACAAGCGCTCGCCCATGCTGGCCAGCGCGGATGC +
Preference number: 1 (lower is better)
Translates to: GWRVQSHEGSWCRIH*TLQQALAHAGQRGC
Trigger: GCATCCGCGCTGGCCAGCATGGGCGAGCGCTTGTTGAAGCGTGCAATGAATTCTACACCAGGATCCCTCATGACTTTGGACTCTCCATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
3UTR CAA 90 bp GATGCAGTCCTCAATCTTCTTGAGAGACTGGTAACCGGCCTTGATTaGCGCCACTGTCAGCTTTCCAAGCGGGGCTCTCTTGGTGTCATA +
Preference number: 2 (lower is better)
Translates to: DAVLNLLERLVTGLD*RHCQLSKRGSLGVI
Trigger: TATGACACCAAGAGAGCCCCGCTTGGAAAGCTGACAGTGGCGCAAATCAAGGCCGGTTACCAGTCTCTCAAGAAGATTGAGGACTGCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
3UTR-3UTR TCA 90 bp GGAGAGTCCAAAGTCATGAGGGATCCTGGTGTAGAATTCATTGCACGCTTCAACACTGGTAACCGGCCTTaGTTTGCGCCACTGTCAGCT +
Preference number: 2 (lower is better)
Translates to: GESKVMRDPGVEFIARFNTGNRP*FAPLSA
Trigger: AGCTGACAGTGGCGCAAATCAAGGCCGGTTACCAGT...GTTGAAGCGTGCAATGAATTCTACACCAGGATCCCTCATGACTTTGGACTCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
3UTR-3UTR GCA 90 bp AATTCATTGCACGCTTCAACAAGCGCTCGCCCATGCTGGCCAGCGCGGATGCAGATTTCTTCCATGGTCTaGACGTTACAGATCAACTTT +
Preference number: 2 (lower is better)
Translates to: NSLHASTSARPCWPARMQISSMV*TLQINF
Trigger: AAAGTTGATCTGTAACGTGCAGACCATGGAAGAAAT...CTGCATCCGCGCTGGCCAGCATGGGCGAGCGCTTGTTGAAGCGTGCAATGAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
3UTR-3UTR TCA 90 bp TGTTCTAGGCCTTGGCGCTCTGACTTCACCAGTTTAAGGGCAATTTCAATGTCTCAGTTTTACTTTGTCTaGCAGTTCCTTCTCTGTCCG +
Preference number: 2 (lower is better)
Translates to: CSRPWRSDFTSLRAISMSQFYFV*QFLLCP
Trigger: CGGACAGAGAAGGAACTGTCAGACAAAGTAAAACTG...AGACATTGAAATTGCCCTTAAACTGGTGAAGTCAGAGCGCCAAGGCCTAGAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
3UTR-3UTR CCA 90 bp AGGCCTTGGCGCTCTGACTTCACCAGTTTAAGGGCAATTTCAATGTCTCCCAATTCATCATTTCTTCCATaGTCTGCACGTTACAGATCA +
Preference number: 2 (lower is better)
Translates to: RPWRSDFTSLRAISMSPNSSFLP*SARYRS
Trigger: TGATCTGTAACGTGCAGACCATGGAAGAAATGATGA...ATTGGGAGACATTGAAATTGCCCTTAAACTGGTGAAGTCAGAGCGCCAAGGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
3UTR GCA 72 bp GTCCAAAGTCATGAGGGATCCTGGTGTAGAATTCATTaGACGCTTCAACAAGCGCTCGCCCATGCTGGCCAG +
Preference number: 3 (lower is better)
Translates to: VQSHEGSWCRIH*TLQQALAHAGQ
Trigger: CTGGCCAGCATGGGCGAGCGCTTGTTGAAGCGTGCAATGAATTCTACACCAGGATCCCTCATGACTTTGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
3UTR CCA 72 bp AATTCATTGCACGCTTCAACAAGCGCTCGCCCATGCTaGCCAGCGCGGATGCAGTCCTCAATCTTCTTGAGA +
Preference number: 3 (lower is better)
Translates to: NSLHASTSARPC*PARMQSSIFLR
Trigger: TCTCAAGAAGATTGAGGACTGCATCCGCGCTGGCCAGCATGGGCGAGCGCTTGTTGAAGCGTGCAATGAATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
3UTR-3UTR CAA 90 bp TTTCTTCCATGGTCTGCACGTTACAGATCAACTTTAGCAGCTCCTGGACTCGAATCACGGTCCTCCCAATaGTTTTTAGTTTTGTCAAGG +
Preference number: 3 (lower is better)
Translates to: FLPWSARYRSTLAAPGLESRSSQ*FLVLSR
Trigger: CCTTGACAAAACTAAAAACAATTGGGAGGACCGTGA...TTCGAGTCCAGGAGCTGCTAAAGTTGATCTGTAACGTGCAGACCATGGAAGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
3UTR-3UTR CAA 90 bp AGGCCTTGGCGCTCTGACTTCACCAGTTTAAGGGCAATTTCAATGTCTCCCAATTCTAGCAGTTTTACTTaGTCTGACAGTTCCTTCTCT +
Preference number: 3 (lower is better)
Translates to: RPWRSDFTSLRAISMSPNSSSFT*SDSSFS
Trigger: AGAGAAGGAACTGTCAGACAAAGTAAAACTGCTAGA...ATTGGGAGACATTGAAATTGCCCTTAAACTGGTGAAGTCAGAGCGCCAAGGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
3UTR TCA 72 bp ATCAACTTTAGCAGCTCCTGGACTCGAAGATCCAGCTaGGACTCAGGCTTCAAAGTTTCCTCTTCTTTTGTT +
Preference number: 3 (lower is better)
Translates to: INFSSSWTRRSS*DSGFKVSSSFV
Trigger: AACAAAAGAAGAGGAAACTTTGAAGCCTGAGTCTCAGCTGGATCTTCGAGTCCAGGAGCTGCTAAAGTTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
3UTR CCA 72 bp TGGTGTCATACTTCATCTCAATCATCATTTCTTCCATaGTCTGCACGTTACAGATCAACTTTAGCAGCTCCT +
Preference number: 3 (lower is better)
Translates to: WCHTSSQSSFLP*SARYRSTLAAP
Trigger: AGGAGCTGCTAAAGTTGATCTGTAACGTGCAGACCATGGAAGAAATGATGATTGAGATGAAGTATGACACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
3UTR GCA 72 bp AAGTTTCCTCTTCTTTTGTTTTACTTTCATCCTGCGTaGTGGCAGCATAGTCCATCTGTAACATGTCGTATT +
Preference number: 3 (lower is better)
Translates to: KFPLLLFYFHPA*WQHSPSVTCRI
Trigger: AATACGACATGTTACAGATGGACTATGCTGCCAGCACGCAGGATGAAAGTAAAACAAAAGAAGAGGAAACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
3UTR CAA 72 bp CTCAATCTTCTTGAGAGACTGGTAACCGGCCTTGATTaGCGCCACTGTCAGCTTTCCAAGCGGGGCTCTCTT +
Preference number: 4 (lower is better)
Translates to: LNLLERLVTGLD*RHCQLSKRGSL
Trigger: AAGAGAGCCCCGCTTGGAAAGCTGACAGTGGCGCAAATCAAGGCCGGTTACCAGTCTCTCAAGAAGATTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
CDS-3UTR TCA 90 bp GCAGTCCTCAATCTTCTTGAGAGACTGGTAACCGGCCTTGATTTGCGCCACTGTAACTCATCCAAACACTaGAGTTCCTCTGGGCATCAT +
Preference number: 4 (lower is better)
Translates to: AVLNLLERLVTGLDLRHCNSSKH*SSSGHH
Trigger: ATGATGCCCAGAGGAACTTCAGTGTTTGGATGAGTT...ACAGTGGCGCAAATCAAGGCCGGTTACCAGTCTCTCAAGAAGATTGAGGACTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
CDS-3UTR CCA 90 bp GGAGAGTCCAAAGTCATGAGGGATCCTGGTGTAGAATTCATTGCACGCTTCAACACACTGAAGTTCCTCTaGGCATCATCTTCTAACAGC +
Preference number: 4 (lower is better)
Translates to: GESKVMRDPGVEFIARFNTLKFL*ASSSNS
Trigger: GCTGTTAGAAGATGATGCCCAGAGGAACTTCAGTGT...GTTGAAGCGTGCAATGAATTCTACACCAGGATCCCTCATGACTTTGGACTCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
3UTR CAA 72 bp ATTTGCGCCACTGTCAGCTTTCCAAGCGGGGCTCTCTaGGTGTCATACTTCATCTCAATCATCATTTCTTCC +
Preference number: 4 (lower is better)
Translates to: ICATVSFPSGAL*VSYFISIIISS
Trigger: GGAAGAAATGATGATTGAGATGAAGTATGACACCAAGAGAGCCCCGCTTGGAAAGCTGACAGTGGCGCAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
3UTR CAA 72 bp CCAGCTGAGACTCAGGCTTCAAAGTTTCCTCTTCTTTaGTTTTACTTTCATCCTGCGTGCTGGCAGCATAGT +
Preference number: 4 (lower is better)
Translates to: PAETQASKFPLL*FYFHPACWQHS
Trigger: ACTATGCTGCCAGCACGCAGGATGAAAGTAAAACAAAAGAAGAGGAAACTTTGAAGCCTGAGTCTCAGCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
3UTR CAA 72 bp ATTTCAATGTCTCCCAATGCCTCTAGCAGTTTTACTTaGTCTGACAGTTCCTTCTCTGTCCGGATTACTGGA +
Preference number: 4 (lower is better)
Translates to: ISMSPNASSSFT*SDSSFSVRITG
Trigger: TCCAGTAATCCGGACAGAGAAGGAACTGTCAGACAAAGTAAAACTGCTAGAGGCATTGGGAGACATTGAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
CDS GCA 90 bp AGCCCGTGGCTCAGGATCCCCACCCAGTTACTCAGCCTGGATCCATaGCAGAGCAGCATCCTGTTAGGAAGGTCCTCCCTGAAGGCCTCT +
Preference number: 5 (lower is better)
Translates to: SPWLRIPTQLLSLDP*QSSILLGRSSLKAS
Trigger: AGAGGCCTTCAGGGAGGACCTTCCTAACAGGATGCTGCTCTGGCATGGATCCAGGCTGAGTAACTGGGTGGGGATCCTGAGCCACGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS GCA 90 bp AAGTGGGCAGGGCTGGGAGCCATCTTTCCCATCCCCTTGGTGCTATaGTTGCCCCGAAGCAATCCTTGTGCTTTAGGATTGGCCTCCAGT +
Preference number: 5 (lower is better)
Translates to: KWAGLGAIFPIPLVL*LPRSNPCALGLASS
Trigger: ACTGGAGGCCAATCCTAAAGCACAAGGATTGCTTCGGGGCAAGCATAGCACCAAGGGGATGGGAAAGATGGCTCCCAGCCCTGCCCACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS CCA 90 bp TTTGTCCTGTCTGCGTCCTTCCCTCCAGCCATAGGCCCTTTTCTCTaGCACGTGCGCATCTTCTTGCCAGGAGGAGAGTCGTCTTCTGTT +
Preference number: 5 (lower is better)
Translates to: FVLSASFPPAIGPFL*HVRIFLPGGESSSV
Trigger: AACAGAAGACGACTCTCCTCCTGGCAAGAAGATGCGCACGTGCCAGAGAAAAGGGCCTATGGCTGGAGGGAAGGACGCAGACAGGACAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS GCA 90 bp TCTTTTGCTTTGTTGAGGTCACCAGAACAAGTCACCAAGCTGTGCTaGCCCGTCTTTCCAACTCGGCCCCACCTCATCCAAACACTGAAG +
Preference number: 5 (lower is better)
Translates to: SFALLRSPEQVTKLC*PVFPTRPHLIQTLK
Trigger: CTTCAGTGTTTGGATGAGGTGGGGCCGAGTTGGAAAGACGGGGCAGCACAGCTTGGTGACTTGTTCTGGTGACCTCAACAAAGCAAAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS CCA 90 bp GTAGATTCCTTTTCCAAACATATAACCTGTGATGGGAGCCTCAGGTaGGGCAACTCTAAGCCCGTGGCTCAGGATCCCCACCCAGTTACT +
Preference number: 5 (lower is better)
Translates to: VDSFSKHITCDGSLR*GNSKPVAQDPHPVT
Trigger: AGTAACTGGGTGGGGATCCTGAGCCACGGGCTTAGAGTTGCCCCACCTGAGGCTCCCATCACAGGTTATATGTTTGGAAAAGGAATCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS CCA 90 bp GAGGAGAGTCGTCTTCTGTTGCTTTGTTGCCATTATCAACTTTCTTaGCTTCATTTAGCACTCGCCTTCCAGAGCCTGATCTCTGCCGCC +
Preference number: 5 (lower is better)
Translates to: EESRLLLLCCHYQLS*LHLALAFQSLISAA
Trigger: GGCGGCAGAGATCAGGCTCTGGAAGGCGAGTGCTAAATGAAGCCAAGAAAGTTGATAATGGCAACAAAGCAACAGAAGACGACTCTCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS GCA 90 bp TGCGCATCTTCTTGCCAGGAGGAGAGTCGTCTTCTGTTGCTTTGTTaGCATTATCAACTTTCTTGGCTTCATTTAGCACTCGCCTTCCAG +
Preference number: 5 (lower is better)
Translates to: CASSCQEESRLLLLC*HYQLSWLHLALAFQ
Trigger: CTGGAAGGCGAGTGCTAAATGAAGCCAAGAAAGTTGATAATGGCAACAAAGCAACAGAAGACGACTCTCCTCCTGGCAAGAAGATGCGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS TCA 90 bp AGCAATCCTTGTGCTTTAGGATTGGCCTCCAGTAGTTCATTACACTaGCCTAGAGCTACCTCTGACAGAAGAAGCAATCCTGTATTCTTT +
Preference number: 5 (lower is better)
Translates to: SNPCALGLASSSSLH*PRATSDRRSNPVFF
Trigger: AAAGAATACAGGATTGCTTCTTCTGTCAGAGGTAGCTCTAGGTCAGTGTAATGAACTACTGGAGGCCAATCCTAAAGCACAAGGATTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS CCA 72 bp GTGATGGGAGCCTCAGGTGGGGCAACTCTAAGCCCGTaGCTCAGGATCCCCACCCAGTTACTCAGCCTGGAT +
Preference number: 6 (lower is better)
Translates to: VMGASGGATLSP*LRIPTQLLSLD
Trigger: ATCCAGGCTGAGTAACTGGGTGGGGATCCTGAGCCACGGGCTTAGAGTTGCCCCACCTGAGGCTCCCATCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS CCA 72 bp TCTGCGTCCTTCCCTCCAGCCATAGGCCCTTTTCTCTaGCACGTGCGCATCTTCTTGCCAGGAGGAGAGTCG +
Preference number: 6 (lower is better)
Translates to: SASFPPAIGPFL*HVRIFLPGGES
Trigger: CGACTCTCCTCCTGGCAAGAAGATGCGCACGTGCCAGAGAAAAGGGCCTATGGCTGGAGGGAAGGACGCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS GCA 72 bp CTCAGGATCCCCACCCAGTTACTCAGCCTGGATCCATaGCAGAGCAGCATCCTGTTAGGAAGGTCCTCCCTG +
Preference number: 6 (lower is better)
Translates to: LRIPTQLLSLDP*QSSILLGRSSL
Trigger: CAGGGAGGACCTTCCTAACAGGATGCTGCTCTGGCATGGATCCAGGCTGAGTAACTGGGTGGGGATCCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS CCA 72 bp AGTGGGCAGGGCTGGGAGCCATCTTTCCCATCCCCTTaGTGCTATGCTTGCCCCGAAGCAATCCTTGTGCTT +
Preference number: 6 (lower is better)
Translates to: SGQGWEPSFPSP*CYACPEAILVL
Trigger: AAGCACAAGGATTGCTTCGGGGCAAGCATAGCACCAAGGGGATGGGAAAGATGGCTCCCAGCCCTGCCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS CAA 72 bp AAGTGGGCAGGGCTGGGAGCCATCTTTCCCATCCCCTaGGTGCTATGCTTGCCCCGAAGCAATCCTTGTGCT +
Preference number: 6 (lower is better)
Translates to: KWAGLGAIFPIP*VLCLPRSNPCA
Trigger: AGCACAAGGATTGCTTCGGGGCAAGCATAGCACCAAGGGGATGGGAAAGATGGCTCCCAGCCCTGCCCACTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS CAA 90 bp TGGGCAGGGCTGGGAGCCATCTTTCCCATCCCCTTGGTGCTATGCTaGCCCCGAAGCAATCCTTGTGCTTTAGGATTGGCCTCCAGTAGT +
Preference number: 6 (lower is better)
Translates to: WAGLGAIFPIPLVLC*PRSNPCALGLASSS
Trigger: ACTACTGGAGGCCAATCCTAAAGCACAAGGATTGCTTCGGGGCAAGCATAGCACCAAGGGGATGGGAAAGATGGCTCCCAGCCCTGCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS CAA 72 bp CCCAGCTTGGCTGCACACTCTGGGTCCACAGGGGCTTaGCCCTTTAACAGCAAGGTCTTCACAGAGTCTCGA +
Preference number: 6 (lower is better)
Translates to: PSLAAHSGSTGA*PFNSKVFTESR
Trigger: TCGAGACTCTGTGAAGACCTTGCTGTTAAAGGGCAAAGCCCCTGTGGACCCAGAGTGTGCAGCCAAGCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS GCA 72 bp TTGTTGAGGTCACCAGAACAAGTCACCAAGCTGTGCTaGCCCGTCTTTCCAACTCGGCCCCACCTCATCCAA +
Preference number: 6 (lower is better)
Translates to: LLRSPEQVTKLC*PVFPTRPHLIQ
Trigger: TTGGATGAGGTGGGGCCGAGTTGGAAAGACGGGGCAGCACAGCTTGGTGACTTGTTCTGGTGACCTCAACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS GCA 72 bp GGGCTGGGAGCCATCTTTCCCATCCCCTTGGTGCTATaGTTGCCCCGAAGCAATCCTTGTGCTTTAGGATTG +
Preference number: 6 (lower is better)
Translates to: GLGAIFPIPLVL*LPRSNPCALGL
Trigger: CAATCCTAAAGCACAAGGATTGCTTCGGGGCAAGCATAGCACCAAGGGGATGGGAAAGATGGCTCCCAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS CAA 72 bp CTGGGAGCCATCTTTCCCATCCCCTTGGTGCTATGCTaGCCCCGAAGCAATCCTTGTGCTTTAGGATTGGCC +
Preference number: 6 (lower is better)
Translates to: LGAIFPIPLVLC*PRSNPCALGLA
Trigger: GGCCAATCCTAAAGCACAAGGATTGCTTCGGGGCAAGCATAGCACCAAGGGGATGGGAAAGATGGCTCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS CCA 72 bp TTTTCCAAACATATAACCTGTGATGGGAGCCTCAGGTaGGGCAACTCTAAGCCCGTGGCTCAGGATCCCCAC +
Preference number: 6 (lower is better)
Translates to: FSKHITCDGSLR*GNSKPVAQDPH
Trigger: GTGGGGATCCTGAGCCACGGGCTTAGAGTTGCCCCACCTGAGGCTCCCATCACAGGTTATATGTTTGGAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS CAA 90 bp ACAGGGGCTTTGCCCTTTAACAGCAAGGTCTTCACAGAGTCTCGATaGTCTTTTGTCCTGTCTGCGTCCTTCCCTCCAGCCATAGGCCCT +
Preference number: 6 (lower is better)
Translates to: TGALPFNSKVFTESR*SFVLSASFPPAIGP
Trigger: AGGGCCTATGGCTGGAGGGAAGGACGCAGACAGGACAAAAGACAATCGAGACTCTGTGAAGACCTTGCTGTTAAAGGGCAAAGCCCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS CAA 90 bp TTCCCTCCAGCCATAGGCCCTTTTCTCTGGCACGTGCGCATCTTCTaGCCAGGAGGAGAGTCGTCTTCTGTTGCTTTGTTGCCATTATCA +
Preference number: 6 (lower is better)
Translates to: FPPAIGPFLWHVRIF*PGGESSSVALLPLS
Trigger: TGATAATGGCAACAAAGCAACAGAAGACGACTCTCCTCCTGGCAAGAAGATGCGCACGTGCCAGAGAAAAGGGCCTATGGCTGGAGGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS CAA 72 bp TTGCCCTTTAACAGCAAGGTCTTCACAGAGTCTCGATaGTCTTTTGTCCTGTCTGCGTCCTTCCCTCCAGCC +
Preference number: 6 (lower is better)
Translates to: LPFNSKVFTESR*SFVLSASFPPA
Trigger: GGCTGGAGGGAAGGACGCAGACAGGACAAAAGACAATCGAGACTCTGTGAAGACCTTGCTGTTAAAGGGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS TCA 72 bp GCTGTGCTGCCCCGTCTTTCCAACTCATCCAAACACTaGAGTTCCTCTGGGCATCATCTTCTAACAGCTGAA +
Preference number: 6 (lower is better)
Translates to: AVLPRLSNSSKH*SSSGHHLLTAE
Trigger: TTCAGCTGTTAGAAGATGATGCCCAGAGGAACTTCAGTGTTTGGATGAGTTGGAAAGACGGGGCAGCACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227810.2
CDS CAA 90 bp CACGTGCGCATCTTCTTGCCAGGAGGAGAGTCGTCTTCTGTTGCTTaGTTGCCATTATCAACTTTCTTGGCTTCATTTAGCACTCGCCTT +
Preference number: 6 (lower is better)
Translates to: HVRIFLPGGESSSVA*LPLSTFLASFSTRL
Trigger: AAGGCGAGTGCTAAATGAAGCCAAGAAAGTTGATAATGGCAACAAAGCAACAGAAGACGACTCTCCTCCTGGCAAGAAGATGCGCACGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS TCA 72 bp TGTGCTTTAGGATTGGCCTCCAGTAGTTCATTACACTaGCCTAGAGCTACCTCTGACAGAAGAAGCAATCCT +
Preference number: 6 (lower is better)
Translates to: CALGLASSSSLH*PRATSDRRSNP
Trigger: AGGATTGCTTCTTCTGTCAGAGGTAGCTCTAGGTCAGTGTAATGAACTACTGGAGGCCAATCCTAAAGCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS GCA 72 bp TCTTGCCAGGAGGAGAGTCGTCTTCTGTTGCTTTGTTaGCATTATCAACTTTCTTGGCTTCATTTAGCACTC +
Preference number: 6 (lower is better)
Translates to: SCQEESRLLLLC*HYQLSWLHLAL
Trigger: GAGTGCTAAATGAAGCCAAGAAAGTTGATAATGGCAACAAAGCAACAGAAGACGACTCTCCTCCTGGCAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS TCA 72 bp TCCTTGTGTGTAGGAGCATGCGTAGACTGTAGGTACTaGGAAATCACCTTAAACTCATTACTTTCATGGTCC +
Preference number: 6 (lower is better)
Translates to: SLCVGACVDCRY*EITLNSLLSWS
Trigger: GGACCATGAAAGTAATGAGTTTAAGGTGATTTCTCAGTACCTACAGTCTACGCATGCTCCTACACACAAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7
CDS CAA 72 bp ATCTTCTTGCCAGGAGGAGAGTCGTCTTCTGTTGCTTaGTTGCCATTATCAACTTTCTTGGCTTCATTTAGC +
Preference number: 6 (lower is better)
Translates to: IFLPGGESSSVA*LPLSTFLASFS
Trigger: GCTAAATGAAGCCAAGAAAGTTGATAATGGCAACAAAGCAACAGAAGACGACTCTCCTCCTGGCAAGAAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036126.7