Pregenerated sensors for PARP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036023Ensembl transcript IDs: ENSMUST00000036126.7, ENSMUST00000227810.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | GGATGGAGAGTCCAAAGTCATGAGGGATCCTGGTGTAGAATTCATTaGACGCTTCAACAAGCGCTCGCCCATGCTGGCCAGCGCGGATGC | + |
Preference number: 1 (lower is better) Translates to: GWRVQSHEGSWCRIH*TLQQALAHAGQRGC Trigger: GCATCCGCGCTGGCCAGCATGGGCGAGCGCTTGTTGAAGCGTGCAATGAATTCTACACCAGGATCCCTCATGACTTTGGACTCTCCATCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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3UTR CAA 90 bp | GATGCAGTCCTCAATCTTCTTGAGAGACTGGTAACCGGCCTTGATTaGCGCCACTGTCAGCTTTCCAAGCGGGGCTCTCTTGGTGTCATA | + |
Preference number: 2 (lower is better) Translates to: DAVLNLLERLVTGLD*RHCQLSKRGSLGVI Trigger: TATGACACCAAGAGAGCCCCGCTTGGAAAGCTGACAGTGGCGCAAATCAAGGCCGGTTACCAGTCTCTCAAGAAGATTGAGGACTGCATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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3UTR-3UTR TCA 90 bp | GGAGAGTCCAAAGTCATGAGGGATCCTGGTGTAGAATTCATTGCACGCTTCAACACTGGTAACCGGCCTTaGTTTGCGCCACTGTCAGCT | + |
Preference number: 2 (lower is better) Translates to: GESKVMRDPGVEFIARFNTGNRP*FAPLSA Trigger: AGCTGACAGTGGCGCAAATCAAGGCCGGTTACCAGT...GTTGAAGCGTGCAATGAATTCTACACCAGGATCCCTCATGACTTTGGACTCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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3UTR-3UTR GCA 90 bp | AATTCATTGCACGCTTCAACAAGCGCTCGCCCATGCTGGCCAGCGCGGATGCAGATTTCTTCCATGGTCTaGACGTTACAGATCAACTTT | + |
Preference number: 2 (lower is better) Translates to: NSLHASTSARPCWPARMQISSMV*TLQINF Trigger: AAAGTTGATCTGTAACGTGCAGACCATGGAAGAAAT...CTGCATCCGCGCTGGCCAGCATGGGCGAGCGCTTGTTGAAGCGTGCAATGAATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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3UTR-3UTR TCA 90 bp | TGTTCTAGGCCTTGGCGCTCTGACTTCACCAGTTTAAGGGCAATTTCAATGTCTCAGTTTTACTTTGTCTaGCAGTTCCTTCTCTGTCCG | + |
Preference number: 2 (lower is better) Translates to: CSRPWRSDFTSLRAISMSQFYFV*QFLLCP Trigger: CGGACAGAGAAGGAACTGTCAGACAAAGTAAAACTG...AGACATTGAAATTGCCCTTAAACTGGTGAAGTCAGAGCGCCAAGGCCTAGAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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3UTR-3UTR CCA 90 bp | AGGCCTTGGCGCTCTGACTTCACCAGTTTAAGGGCAATTTCAATGTCTCCCAATTCATCATTTCTTCCATaGTCTGCACGTTACAGATCA | + |
Preference number: 2 (lower is better) Translates to: RPWRSDFTSLRAISMSPNSSFLP*SARYRS Trigger: TGATCTGTAACGTGCAGACCATGGAAGAAATGATGA...ATTGGGAGACATTGAAATTGCCCTTAAACTGGTGAAGTCAGAGCGCCAAGGCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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3UTR GCA 72 bp | GTCCAAAGTCATGAGGGATCCTGGTGTAGAATTCATTaGACGCTTCAACAAGCGCTCGCCCATGCTGGCCAG | + |
Preference number: 3 (lower is better) Translates to: VQSHEGSWCRIH*TLQQALAHAGQ Trigger: CTGGCCAGCATGGGCGAGCGCTTGTTGAAGCGTGCAATGAATTCTACACCAGGATCCCTCATGACTTTGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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3UTR CCA 72 bp | AATTCATTGCACGCTTCAACAAGCGCTCGCCCATGCTaGCCAGCGCGGATGCAGTCCTCAATCTTCTTGAGA | + |
Preference number: 3 (lower is better) Translates to: NSLHASTSARPC*PARMQSSIFLR Trigger: TCTCAAGAAGATTGAGGACTGCATCCGCGCTGGCCAGCATGGGCGAGCGCTTGTTGAAGCGTGCAATGAATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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3UTR-3UTR CAA 90 bp | TTTCTTCCATGGTCTGCACGTTACAGATCAACTTTAGCAGCTCCTGGACTCGAATCACGGTCCTCCCAATaGTTTTTAGTTTTGTCAAGG | + |
Preference number: 3 (lower is better) Translates to: FLPWSARYRSTLAAPGLESRSSQ*FLVLSR Trigger: CCTTGACAAAACTAAAAACAATTGGGAGGACCGTGA...TTCGAGTCCAGGAGCTGCTAAAGTTGATCTGTAACGTGCAGACCATGGAAGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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3UTR-3UTR CAA 90 bp | AGGCCTTGGCGCTCTGACTTCACCAGTTTAAGGGCAATTTCAATGTCTCCCAATTCTAGCAGTTTTACTTaGTCTGACAGTTCCTTCTCT | + |
Preference number: 3 (lower is better) Translates to: RPWRSDFTSLRAISMSPNSSSFT*SDSSFS Trigger: AGAGAAGGAACTGTCAGACAAAGTAAAACTGCTAGA...ATTGGGAGACATTGAAATTGCCCTTAAACTGGTGAAGTCAGAGCGCCAAGGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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3UTR TCA 72 bp | ATCAACTTTAGCAGCTCCTGGACTCGAAGATCCAGCTaGGACTCAGGCTTCAAAGTTTCCTCTTCTTTTGTT | + |
Preference number: 3 (lower is better) Translates to: INFSSSWTRRSS*DSGFKVSSSFV Trigger: AACAAAAGAAGAGGAAACTTTGAAGCCTGAGTCTCAGCTGGATCTTCGAGTCCAGGAGCTGCTAAAGTTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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3UTR CCA 72 bp | TGGTGTCATACTTCATCTCAATCATCATTTCTTCCATaGTCTGCACGTTACAGATCAACTTTAGCAGCTCCT | + |
Preference number: 3 (lower is better) Translates to: WCHTSSQSSFLP*SARYRSTLAAP Trigger: AGGAGCTGCTAAAGTTGATCTGTAACGTGCAGACCATGGAAGAAATGATGATTGAGATGAAGTATGACACCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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3UTR GCA 72 bp | AAGTTTCCTCTTCTTTTGTTTTACTTTCATCCTGCGTaGTGGCAGCATAGTCCATCTGTAACATGTCGTATT | + |
Preference number: 3 (lower is better) Translates to: KFPLLLFYFHPA*WQHSPSVTCRI Trigger: AATACGACATGTTACAGATGGACTATGCTGCCAGCACGCAGGATGAAAGTAAAACAAAAGAAGAGGAAACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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3UTR CAA 72 bp | CTCAATCTTCTTGAGAGACTGGTAACCGGCCTTGATTaGCGCCACTGTCAGCTTTCCAAGCGGGGCTCTCTT | + |
Preference number: 4 (lower is better) Translates to: LNLLERLVTGLD*RHCQLSKRGSL Trigger: AAGAGAGCCCCGCTTGGAAAGCTGACAGTGGCGCAAATCAAGGCCGGTTACCAGTCTCTCAAGAAGATTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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CDS-3UTR TCA 90 bp | GCAGTCCTCAATCTTCTTGAGAGACTGGTAACCGGCCTTGATTTGCGCCACTGTAACTCATCCAAACACTaGAGTTCCTCTGGGCATCAT | + |
Preference number: 4 (lower is better) Translates to: AVLNLLERLVTGLDLRHCNSSKH*SSSGHH Trigger: ATGATGCCCAGAGGAACTTCAGTGTTTGGATGAGTT...ACAGTGGCGCAAATCAAGGCCGGTTACCAGTCTCTCAAGAAGATTGAGGACTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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CDS-3UTR CCA 90 bp | GGAGAGTCCAAAGTCATGAGGGATCCTGGTGTAGAATTCATTGCACGCTTCAACACACTGAAGTTCCTCTaGGCATCATCTTCTAACAGC | + |
Preference number: 4 (lower is better) Translates to: GESKVMRDPGVEFIARFNTLKFL*ASSSNS Trigger: GCTGTTAGAAGATGATGCCCAGAGGAACTTCAGTGT...GTTGAAGCGTGCAATGAATTCTACACCAGGATCCCTCATGACTTTGGACTCTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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3UTR CAA 72 bp | ATTTGCGCCACTGTCAGCTTTCCAAGCGGGGCTCTCTaGGTGTCATACTTCATCTCAATCATCATTTCTTCC | + |
Preference number: 4 (lower is better) Translates to: ICATVSFPSGAL*VSYFISIIISS Trigger: GGAAGAAATGATGATTGAGATGAAGTATGACACCAAGAGAGCCCCGCTTGGAAAGCTGACAGTGGCGCAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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3UTR CAA 72 bp | CCAGCTGAGACTCAGGCTTCAAAGTTTCCTCTTCTTTaGTTTTACTTTCATCCTGCGTGCTGGCAGCATAGT | + |
Preference number: 4 (lower is better) Translates to: PAETQASKFPLL*FYFHPACWQHS Trigger: ACTATGCTGCCAGCACGCAGGATGAAAGTAAAACAAAAGAAGAGGAAACTTTGAAGCCTGAGTCTCAGCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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3UTR CAA 72 bp | ATTTCAATGTCTCCCAATGCCTCTAGCAGTTTTACTTaGTCTGACAGTTCCTTCTCTGTCCGGATTACTGGA | + |
Preference number: 4 (lower is better) Translates to: ISMSPNASSSFT*SDSSFSVRITG Trigger: TCCAGTAATCCGGACAGAGAAGGAACTGTCAGACAAAGTAAAACTGCTAGAGGCATTGGGAGACATTGAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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CDS GCA 90 bp | AGCCCGTGGCTCAGGATCCCCACCCAGTTACTCAGCCTGGATCCATaGCAGAGCAGCATCCTGTTAGGAAGGTCCTCCCTGAAGGCCTCT | + |
Preference number: 5 (lower is better) Translates to: SPWLRIPTQLLSLDP*QSSILLGRSSLKAS Trigger: AGAGGCCTTCAGGGAGGACCTTCCTAACAGGATGCTGCTCTGGCATGGATCCAGGCTGAGTAACTGGGTGGGGATCCTGAGCCACGGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS GCA 90 bp | AAGTGGGCAGGGCTGGGAGCCATCTTTCCCATCCCCTTGGTGCTATaGTTGCCCCGAAGCAATCCTTGTGCTTTAGGATTGGCCTCCAGT | + |
Preference number: 5 (lower is better) Translates to: KWAGLGAIFPIPLVL*LPRSNPCALGLASS Trigger: ACTGGAGGCCAATCCTAAAGCACAAGGATTGCTTCGGGGCAAGCATAGCACCAAGGGGATGGGAAAGATGGCTCCCAGCCCTGCCCACTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS CCA 90 bp | TTTGTCCTGTCTGCGTCCTTCCCTCCAGCCATAGGCCCTTTTCTCTaGCACGTGCGCATCTTCTTGCCAGGAGGAGAGTCGTCTTCTGTT | + |
Preference number: 5 (lower is better) Translates to: FVLSASFPPAIGPFL*HVRIFLPGGESSSV Trigger: AACAGAAGACGACTCTCCTCCTGGCAAGAAGATGCGCACGTGCCAGAGAAAAGGGCCTATGGCTGGAGGGAAGGACGCAGACAGGACAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS GCA 90 bp | TCTTTTGCTTTGTTGAGGTCACCAGAACAAGTCACCAAGCTGTGCTaGCCCGTCTTTCCAACTCGGCCCCACCTCATCCAAACACTGAAG | + |
Preference number: 5 (lower is better) Translates to: SFALLRSPEQVTKLC*PVFPTRPHLIQTLK Trigger: CTTCAGTGTTTGGATGAGGTGGGGCCGAGTTGGAAAGACGGGGCAGCACAGCTTGGTGACTTGTTCTGGTGACCTCAACAAAGCAAAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS CCA 90 bp | GTAGATTCCTTTTCCAAACATATAACCTGTGATGGGAGCCTCAGGTaGGGCAACTCTAAGCCCGTGGCTCAGGATCCCCACCCAGTTACT | + |
Preference number: 5 (lower is better) Translates to: VDSFSKHITCDGSLR*GNSKPVAQDPHPVT Trigger: AGTAACTGGGTGGGGATCCTGAGCCACGGGCTTAGAGTTGCCCCACCTGAGGCTCCCATCACAGGTTATATGTTTGGAAAAGGAATCTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS CCA 90 bp | GAGGAGAGTCGTCTTCTGTTGCTTTGTTGCCATTATCAACTTTCTTaGCTTCATTTAGCACTCGCCTTCCAGAGCCTGATCTCTGCCGCC | + |
Preference number: 5 (lower is better) Translates to: EESRLLLLCCHYQLS*LHLALAFQSLISAA Trigger: GGCGGCAGAGATCAGGCTCTGGAAGGCGAGTGCTAAATGAAGCCAAGAAAGTTGATAATGGCAACAAAGCAACAGAAGACGACTCTCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS GCA 90 bp | TGCGCATCTTCTTGCCAGGAGGAGAGTCGTCTTCTGTTGCTTTGTTaGCATTATCAACTTTCTTGGCTTCATTTAGCACTCGCCTTCCAG | + |
Preference number: 5 (lower is better) Translates to: CASSCQEESRLLLLC*HYQLSWLHLALAFQ Trigger: CTGGAAGGCGAGTGCTAAATGAAGCCAAGAAAGTTGATAATGGCAACAAAGCAACAGAAGACGACTCTCCTCCTGGCAAGAAGATGCGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS TCA 90 bp | AGCAATCCTTGTGCTTTAGGATTGGCCTCCAGTAGTTCATTACACTaGCCTAGAGCTACCTCTGACAGAAGAAGCAATCCTGTATTCTTT | + |
Preference number: 5 (lower is better) Translates to: SNPCALGLASSSSLH*PRATSDRRSNPVFF Trigger: AAAGAATACAGGATTGCTTCTTCTGTCAGAGGTAGCTCTAGGTCAGTGTAATGAACTACTGGAGGCCAATCCTAAAGCACAAGGATTGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS CCA 72 bp | GTGATGGGAGCCTCAGGTGGGGCAACTCTAAGCCCGTaGCTCAGGATCCCCACCCAGTTACTCAGCCTGGAT | + |
Preference number: 6 (lower is better) Translates to: VMGASGGATLSP*LRIPTQLLSLD Trigger: ATCCAGGCTGAGTAACTGGGTGGGGATCCTGAGCCACGGGCTTAGAGTTGCCCCACCTGAGGCTCCCATCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS CCA 72 bp | TCTGCGTCCTTCCCTCCAGCCATAGGCCCTTTTCTCTaGCACGTGCGCATCTTCTTGCCAGGAGGAGAGTCG | + |
Preference number: 6 (lower is better) Translates to: SASFPPAIGPFL*HVRIFLPGGES Trigger: CGACTCTCCTCCTGGCAAGAAGATGCGCACGTGCCAGAGAAAAGGGCCTATGGCTGGAGGGAAGGACGCAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS GCA 72 bp | CTCAGGATCCCCACCCAGTTACTCAGCCTGGATCCATaGCAGAGCAGCATCCTGTTAGGAAGGTCCTCCCTG | + |
Preference number: 6 (lower is better) Translates to: LRIPTQLLSLDP*QSSILLGRSSL Trigger: CAGGGAGGACCTTCCTAACAGGATGCTGCTCTGGCATGGATCCAGGCTGAGTAACTGGGTGGGGATCCTGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS CCA 72 bp | AGTGGGCAGGGCTGGGAGCCATCTTTCCCATCCCCTTaGTGCTATGCTTGCCCCGAAGCAATCCTTGTGCTT | + |
Preference number: 6 (lower is better) Translates to: SGQGWEPSFPSP*CYACPEAILVL Trigger: AAGCACAAGGATTGCTTCGGGGCAAGCATAGCACCAAGGGGATGGGAAAGATGGCTCCCAGCCCTGCCCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS CAA 72 bp | AAGTGGGCAGGGCTGGGAGCCATCTTTCCCATCCCCTaGGTGCTATGCTTGCCCCGAAGCAATCCTTGTGCT | + |
Preference number: 6 (lower is better) Translates to: KWAGLGAIFPIP*VLCLPRSNPCA Trigger: AGCACAAGGATTGCTTCGGGGCAAGCATAGCACCAAGGGGATGGGAAAGATGGCTCCCAGCCCTGCCCACTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS CAA 90 bp | TGGGCAGGGCTGGGAGCCATCTTTCCCATCCCCTTGGTGCTATGCTaGCCCCGAAGCAATCCTTGTGCTTTAGGATTGGCCTCCAGTAGT | + |
Preference number: 6 (lower is better) Translates to: WAGLGAIFPIPLVLC*PRSNPCALGLASSS Trigger: ACTACTGGAGGCCAATCCTAAAGCACAAGGATTGCTTCGGGGCAAGCATAGCACCAAGGGGATGGGAAAGATGGCTCCCAGCCCTGCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS CAA 72 bp | CCCAGCTTGGCTGCACACTCTGGGTCCACAGGGGCTTaGCCCTTTAACAGCAAGGTCTTCACAGAGTCTCGA | + |
Preference number: 6 (lower is better) Translates to: PSLAAHSGSTGA*PFNSKVFTESR Trigger: TCGAGACTCTGTGAAGACCTTGCTGTTAAAGGGCAAAGCCCCTGTGGACCCAGAGTGTGCAGCCAAGCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS GCA 72 bp | TTGTTGAGGTCACCAGAACAAGTCACCAAGCTGTGCTaGCCCGTCTTTCCAACTCGGCCCCACCTCATCCAA | + |
Preference number: 6 (lower is better) Translates to: LLRSPEQVTKLC*PVFPTRPHLIQ Trigger: TTGGATGAGGTGGGGCCGAGTTGGAAAGACGGGGCAGCACAGCTTGGTGACTTGTTCTGGTGACCTCAACAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS GCA 72 bp | GGGCTGGGAGCCATCTTTCCCATCCCCTTGGTGCTATaGTTGCCCCGAAGCAATCCTTGTGCTTTAGGATTG | + |
Preference number: 6 (lower is better) Translates to: GLGAIFPIPLVL*LPRSNPCALGL Trigger: CAATCCTAAAGCACAAGGATTGCTTCGGGGCAAGCATAGCACCAAGGGGATGGGAAAGATGGCTCCCAGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS CAA 72 bp | CTGGGAGCCATCTTTCCCATCCCCTTGGTGCTATGCTaGCCCCGAAGCAATCCTTGTGCTTTAGGATTGGCC | + |
Preference number: 6 (lower is better) Translates to: LGAIFPIPLVLC*PRSNPCALGLA Trigger: GGCCAATCCTAAAGCACAAGGATTGCTTCGGGGCAAGCATAGCACCAAGGGGATGGGAAAGATGGCTCCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS CCA 72 bp | TTTTCCAAACATATAACCTGTGATGGGAGCCTCAGGTaGGGCAACTCTAAGCCCGTGGCTCAGGATCCCCAC | + |
Preference number: 6 (lower is better) Translates to: FSKHITCDGSLR*GNSKPVAQDPH Trigger: GTGGGGATCCTGAGCCACGGGCTTAGAGTTGCCCCACCTGAGGCTCCCATCACAGGTTATATGTTTGGAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS CAA 90 bp | ACAGGGGCTTTGCCCTTTAACAGCAAGGTCTTCACAGAGTCTCGATaGTCTTTTGTCCTGTCTGCGTCCTTCCCTCCAGCCATAGGCCCT | + |
Preference number: 6 (lower is better) Translates to: TGALPFNSKVFTESR*SFVLSASFPPAIGP Trigger: AGGGCCTATGGCTGGAGGGAAGGACGCAGACAGGACAAAAGACAATCGAGACTCTGTGAAGACCTTGCTGTTAAAGGGCAAAGCCCCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS CAA 90 bp | TTCCCTCCAGCCATAGGCCCTTTTCTCTGGCACGTGCGCATCTTCTaGCCAGGAGGAGAGTCGTCTTCTGTTGCTTTGTTGCCATTATCA | + |
Preference number: 6 (lower is better) Translates to: FPPAIGPFLWHVRIF*PGGESSSVALLPLS Trigger: TGATAATGGCAACAAAGCAACAGAAGACGACTCTCCTCCTGGCAAGAAGATGCGCACGTGCCAGAGAAAAGGGCCTATGGCTGGAGGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS CAA 72 bp | TTGCCCTTTAACAGCAAGGTCTTCACAGAGTCTCGATaGTCTTTTGTCCTGTCTGCGTCCTTCCCTCCAGCC | + |
Preference number: 6 (lower is better) Translates to: LPFNSKVFTESR*SFVLSASFPPA Trigger: GGCTGGAGGGAAGGACGCAGACAGGACAAAAGACAATCGAGACTCTGTGAAGACCTTGCTGTTAAAGGGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS TCA 72 bp | GCTGTGCTGCCCCGTCTTTCCAACTCATCCAAACACTaGAGTTCCTCTGGGCATCATCTTCTAACAGCTGAA | + |
Preference number: 6 (lower is better) Translates to: AVLPRLSNSSKH*SSSGHHLLTAE Trigger: TTCAGCTGTTAGAAGATGATGCCCAGAGGAACTTCAGTGTTTGGATGAGTTGGAAAGACGGGGCAGCACAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227810.2 |
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CDS CAA 90 bp | CACGTGCGCATCTTCTTGCCAGGAGGAGAGTCGTCTTCTGTTGCTTaGTTGCCATTATCAACTTTCTTGGCTTCATTTAGCACTCGCCTT | + |
Preference number: 6 (lower is better) Translates to: HVRIFLPGGESSSVA*LPLSTFLASFSTRL Trigger: AAGGCGAGTGCTAAATGAAGCCAAGAAAGTTGATAATGGCAACAAAGCAACAGAAGACGACTCTCCTCCTGGCAAGAAGATGCGCACGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS TCA 72 bp | TGTGCTTTAGGATTGGCCTCCAGTAGTTCATTACACTaGCCTAGAGCTACCTCTGACAGAAGAAGCAATCCT | + |
Preference number: 6 (lower is better) Translates to: CALGLASSSSLH*PRATSDRRSNP Trigger: AGGATTGCTTCTTCTGTCAGAGGTAGCTCTAGGTCAGTGTAATGAACTACTGGAGGCCAATCCTAAAGCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS GCA 72 bp | TCTTGCCAGGAGGAGAGTCGTCTTCTGTTGCTTTGTTaGCATTATCAACTTTCTTGGCTTCATTTAGCACTC | + |
Preference number: 6 (lower is better) Translates to: SCQEESRLLLLC*HYQLSWLHLAL Trigger: GAGTGCTAAATGAAGCCAAGAAAGTTGATAATGGCAACAAAGCAACAGAAGACGACTCTCCTCCTGGCAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS TCA 72 bp | TCCTTGTGTGTAGGAGCATGCGTAGACTGTAGGTACTaGGAAATCACCTTAAACTCATTACTTTCATGGTCC | + |
Preference number: 6 (lower is better) Translates to: SLCVGACVDCRY*EITLNSLLSWS Trigger: GGACCATGAAAGTAATGAGTTTAAGGTGATTTCTCAGTACCTACAGTCTACGCATGCTCCTACACACAAGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |
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CDS CAA 72 bp | ATCTTCTTGCCAGGAGGAGAGTCGTCTTCTGTTGCTTaGTTGCCATTATCAACTTTCTTGGCTTCATTTAGC | + |
Preference number: 6 (lower is better) Translates to: IFLPGGESSSVA*LPLSTFLASFS Trigger: GCTAAATGAAGCCAAGAAAGTTGATAATGGCAACAAAGCAACAGAAGACGACTCTCCTCCTGGCAAGAAGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036126.7 |