RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PARP16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032392

Ensembl transcript IDs: ENSMUST00000069000.9, ENSMUST00000213396.2, ENSMUST00000216486.2, ENSMUST00000216702.2

Found 210 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGAGGCTCAGCCCATGGAGACCCGTGGCCCACTGAGGCAGGCCTCTaGTGTGAAGGCTGCCGGGCCCCTGAGAGCCTAGAGTGTTGGGTA +
Preference number: 1 (lower is better)
Translates to: GGSAHGDPWPTEAGL*CEGCRAPESLECWV
Trigger: TACCCAACACTCTAGGCTCTCAGGGGCCCGGCAGCCTTCACAGCAGAGGCCTGCCTCAGTGGGCCACGGGTCTCCATGGGCTGAGCCTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR CCA 90 bp TCAACCTCAGGCTTCTCGGATGGAGGCTCAGCCCATGGAGACCCGTaGCCCACTGAGGCAGGCCTCTGCTGTGAAGGCTGCCGGGCCCCT +
Preference number: 1 (lower is better)
Translates to: STSGFSDGGSAHGDP*PTEAGLCCEGCRAP
Trigger: AGGGGCCCGGCAGCCTTCACAGCAGAGGCCTGCCTCAGTGGGCCACGGGTCTCCATGGGCTGAGCCTCCATCCGAGAAGCCTGAGGTTGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR GCA 90 bp CATGGAGACCCGTGGCCCACTGAGGCAGGCCTCTGCTGTGAAGGCTaGCGGGCCCCTGAGAGCCTAGAGTGTTGGGTATCAAGGCAGCTT +
Preference number: 1 (lower is better)
Translates to: HGDPWPTEAGLCCEG*RAPESLECWVSRQL
Trigger: AAGCTGCCTTGATACCCAACACTCTAGGCTCTCAGGGGCCCGGCAGCCTTCACAGCAGAGGCCTGCCTCAGTGGGCCACGGGTCTCCATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR CCA 90 bp GGCCTCTGCTGTGAAGGCTGCCGGGCCCCTGAGAGCCTAGAGTGTTaGGTATCAAGGCAGCTTTGTGGGAATGAGGACCCTGGTGAGCCT +
Preference number: 1 (lower is better)
Translates to: GLCCEGCRAPESLEC*VSRQLCGNEDPGEP
Trigger: AGGCTCACCAGGGTCCTCATTCCCACAAAGCTGCCTTGATACCCAACACTCTAGGCTCTCAGGGGCCCGGCAGCCTTCACAGCAGAGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR CCA 90 bp GGAAACTCCATTCCCAGCAGACAGGGGTCTTCTGCCGCTGAAACCTaGCAGGAAGGAGGGATAAACACCACAGCAAGGATGGCTGGGCCT +
Preference number: 1 (lower is better)
Translates to: GNSIPSRQGSSAAET*QEGGINTTARMAGP
Trigger: AGGCCCAGCCATCCTTGCTGTGGTGTTTATCCCTCCTTCCTGCCAGGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAATGGAGTTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR TCA 90 bp CTGTGCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTaGCACACAGGAGGTAGAGGACAAGTTTCCATAAGGCACACGGTG +
Preference number: 1 (lower is better)
Translates to: LCTPANGPQTRPDRM*HTGGRGQVSIRHTV
Trigger: CACCGTGTGCCTTATGGAAACTTGTCCTCTACCTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGCACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
3UTR TCA 90 bp GATTCTTGCTCGGCTGCGGTCTATTTCCTTGGAATCCTCAGCCCCTaGGACAGGCTGATTTCCTGTGAGCTCAAGGCCAGCCTGGTCTGC +
Preference number: 1 (lower is better)
Translates to: DSCSAAVYFLGILSP*DRLISCELKASLVC
Trigger: GCAGACCAGGCTGGCCTTGAGCTCACAGGAAATCAGCCTGTCTCAGGGGCTGAGGATTCCAAGGAAATAGACCGCAGCCGAGCAAGAATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR TCA 90 bp CCTCTATGGAAACTCCATTCCCAGCAGACAGGGGTCTTCTGCCGCTaGAACCTGGCAGGAAGGAGGGATAAACACCACAGCAAGGATGGC +
Preference number: 1 (lower is better)
Translates to: PLWKLHSQQTGVFCR*NLAGRRDKHHSKDG
Trigger: GCCATCCTTGCTGTGGTGTTTATCCCTCCTTCCTGCCAGGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAATGGAGTTTCCATAGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR CCA 90 bp CCCACTCCAAGCACCTGGGATCATCTCTTCACACGATTCCAGAAGTaGTGGAACACAGAGGAGTTGGTGACACTCACGATGAGCAGCAGC +
Preference number: 1 (lower is better)
Translates to: PTPSTWDHLFTRFQK*WNTEELVTLTMSSS
Trigger: GCTGCTGCTCATCGTGAGTGTCACCAACTCCTCTGTGTTCCACCACTTCTGGAATCGTGTGAAGAGATGATCCCAGGTGCTTGGAGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR CCA 90 bp GGGTATCAAGGCAGCTTTGTGGGAATGAGGACCCTGGTGAGCCTATaGCTTGGACCCTTCTCCATAACAACACCAGAAAGAGGCTGTGGA +
Preference number: 1 (lower is better)
Translates to: GYQGSFVGMRTLVSL*LGPFSITTPERGCG
Trigger: TCCACAGCCTCTTTCTGGTGTTGTTATGGAGAAGGGTCCAAGCCATAGGCTCACCAGGGTCCTCATTCCCACAAAGCTGCCTTGATACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR CCA 90 bp ACTCCAAGCACCTGGGATCATCTCTTCACACGATTCCAGAAGTGGTaGAACACAGAGGAGTTGGTGACACTCACGATGAGCAGCAGCAGC +
Preference number: 1 (lower is better)
Translates to: TPSTWDHLFTRFQKW*NTEELVTLTMSSSS
Trigger: GCTGCTGCTGCTCATCGTGAGTGTCACCAACTCCTCTGTGTTCCACCACTTCTGGAATCGTGTGAAGAGATGATCCCAGGTGCTTGGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR CCA 90 bp TTAAATCTGCATTTTGTTATCCCGCCTGTGGCTCCTCCTCTTGTGTaGTTAAGGAGGGAGGGGGTACAGCTGTGGCAGAGACGGTTGTTG +
Preference number: 1 (lower is better)
Translates to: LNLHFVIPPVAPPLV*LRREGVQLWQRRLL
Trigger: CAACAACCGTCTCTGCCACAGCTGTACCCCCTCCCTCCTTAACCACACAAGAGGAGGAGCCACAGGCGGGATAACAAAATGCAGATTTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR CCA 90 bp CATTCTGTCTTCCAAAAGGCATTAGCATCCGGGCCGGCCTCCATCTaGGCAATTGTAAACACACCTCGGACAGCTTGGACACTTTGCTTT +
Preference number: 1 (lower is better)
Translates to: HSVFQKALASGPASI*AIVNTPRTAWTLCF
Trigger: AAAGCAAAGTGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGATGCTAATGCCTTTTGGAAGACAGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
3UTR-3UTR CCA 90 bp TCGTCCTGTGCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTGACGACAACCAGGAGAGCTaGCTCGAGGCCCTCTTGGGC +
Preference number: 2 (lower is better)
Translates to: SSCAPLQMVPRLDLTGCDDNQES*LEALLG
Trigger: GCCCAAGAGGGCCTCGAGCCAGCTCTCCTGGTTGTC...GTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGCACAGGACGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR-3UTR CCA 90 bp ACTCCATTCCCAGCAGACAGGGGTCTTCTGCCGCTGAAACCTGGCAGGAAGGAGAAGGCACACGGTGAGTaGCCCCACTCCAAGCACCTG +
Preference number: 2 (lower is better)
Translates to: TPFPADRGLLPLKPGRKEKAHGE*PHSKHL
Trigger: CAGGTGCTTGGAGTGGGGCCACTCACCGTGTGCCTT...CTCCTTCCTGCCAGGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAATGGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR-3UTR TCA 90 bp TCCGGGCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACATCCTTTGGCTCTGGCTaGAGAGCCACCTCCCTAGAC +
Preference number: 2 (lower is better)
Translates to: SGPASIWAIVNTPRTAWTSFGSG*RATSLD
Trigger: GTCTAGGGAGGTGGCTCTTCAGCCAGAGCCAAAGGA...TGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
3UTR-3UTR TCA 90 bp CTGAAGAGCCACCTCCCTAGACTATTTAGGAGGAAGCAGAGGGTAGGACACCCCCCCCCTCGCTGTGCTTaGTTCTTGCTCGGCTGCGGT +
Preference number: 2 (lower is better)
Translates to: LKSHLPRLFRRKQRVGHPPPRCA*FLLGCG
Trigger: ACCGCAGCCGAGCAAGAATCAAGCACAGCGAGGGGG...GGGGTGTCCTACCCTCTGCTTCCTCCTAAATAGTCTAGGGAGGTGGCTCTTCAG
59% GC, longest homopolymer 9 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR-3UTR TCA 90 bp CCAGAAAGAGGCTGTGGATGTAGCCACTCGGTGCTCCAGGTTCACACATCTCCCTCCTTTGGCTCTGGCTaGAGAGCCACCTCCCTAGAC +
Preference number: 2 (lower is better)
Translates to: PERGCGCSHSVLQVHTSPSFGSG*RATSLD
Trigger: GTCTAGGGAGGTGGCTCTTCAGCCAGAGCCAAAGGA...GGGAGATGTGTGAACCTGGAGCACCGAGTGGCTACATCCACAGCCTCTTTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR-3UTR CCA 90 bp CTGAAGAGCCACCTCCCTAGACTATTTAGGAGGAAGCAGAGGGTAGGACACCCCAAGGCACACGGTGAGTaGCCCCACTCCAAGCACCTG +
Preference number: 2 (lower is better)
Translates to: LKSHLPRLFRRKQRVGHPKAHGE*PHSKHL
Trigger: CAGGTGCTTGGAGTGGGGCCACTCACCGTGTGCCTT...GGGGTGTCCTACCCTCTGCTTCCTCCTAAATAGTCTAGGGAGGTGGCTCTTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
3UTR-3UTR CCA 90 bp GTCCCCAGACTCGACCTGACCGGATGTGACACACAGGAGGTAGAGGACAAGTTTAAGGCACACGGTGAGTaGCCCCACTCCAAGCACCTG +
Preference number: 2 (lower is better)
Translates to: VPRLDLTGCDTQEVEDKFKAHGE*PHSKHL
Trigger: CAGGTGCTTGGAGTGGGGCCACTCACCGTGTGCCTT...AAACTTGTCCTCTACCTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
3UTR-3UTR TCA 90 bp CTGAAGAGCCACCTCCCTAGACTATTTAGGAGGAAGCAGAGGGTAGGACACCCCGCCCCTGAGACAGGCTaGTTTCCTGTGAGCTCAAGG +
Preference number: 2 (lower is better)
Translates to: LKSHLPRLFRRKQRVGHPAPETG*FPVSSR
Trigger: CCTTGAGCTCACAGGAAATCAGCCTGTCTCAGGGGC...GGGGTGTCCTACCCTCTGCTTCCTCCTAAATAGTCTAGGGAGGTGGCTCTTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR-3UTR CCA 90 bp TCGTCCTGTGCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTGACCAGGACTTTTTCCTTTaGCTCTGGCTGAAGAGCCAC +
Preference number: 2 (lower is better)
Translates to: SSCAPLQMVPRLDLTGCDQDFFL*LWLKSH
Trigger: GTGGCTCTTCAGCCAGAGCCAAAGGAAAAAGTCCTG...GTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGCACAGGACGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
3UTR-3UTR CCA 90 bp AGGCAGCTTTGTGGGAATGAGGACCCTGGTGAGCCTATGGCTTGGACCCTTCTCGGGCCGGCCTCCATCTaGGCAATTGTAAACACACCT +
Preference number: 2 (lower is better)
Translates to: RQLCGNEDPGEPMAWTLLGPASI*AIVNTP
Trigger: AGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCC...GAGAAGGGTCCAAGCCATAGGCTCACCAGGGTCCTCATTCCCACAAAGCTGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR-3UTR CCA 90 bp AGGCAGCTTTGTGGGAATGAGGACCCTGGTGAGCCTATGGCTTGGACCCTTCTCGAGGGGGTACAGCTGTaGCAGAGACGGTTGTTGATC +
Preference number: 2 (lower is better)
Translates to: RQLCGNEDPGEPMAWTLLEGVQL*QRRLLI
Trigger: GATCAACAACCGTCTCTGCCACAGCTGTACCCCCTC...GAGAAGGGTCCAAGCCATAGGCTCACCAGGGTCCTCATTCCCACAAAGCTGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR-3UTR TCA 90 bp AGGCAGCTTTGTGGGAATGAGGACCCTGGTGAGCCTATGGCTTGGACCCTTCTCCCCTCTTGGGTGTCTTaGGTCAAAACAAGGCAGTCG +
Preference number: 2 (lower is better)
Translates to: RQLCGNEDPGEPMAWTLLPSWVS*VKTRQS
Trigger: CGACTGCCTTGTTTTGACTCAAGACACCCAAGAGGG...GAGAAGGGTCCAAGCCATAGGCTCACCAGGGTCCTCATTCCCACAAAGCTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR-3UTR CCA 90 bp TGCTTCTGGGAATACACCAGCAGGTACTTCACCCGCAGAAGCTGGTTATTGGTGAAGGCACACGGTGAGTaGCCCCACTCCAAGCACCTG +
Preference number: 2 (lower is better)
Translates to: CFWEYTSRYFTRRSWLLVKAHGE*PHSKHL
Trigger: CAGGTGCTTGGAGTGGGGCCACTCACCGTGTGCCTT...CACCAATAACCAGCTTCTGCGGGTGAAGTACCTGCTGGTGTATTCCCAGAAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR-3UTR CCA 90 bp CCAGAAAGAGGCTGTGGATGTAGCCACTCGGTGCTCCAGGTTCACACATCTCCCTTGTTATCCCGCCTGTaGCTCCTCCTCTTGTGTGGT +
Preference number: 2 (lower is better)
Translates to: PERGCGCSHSVLQVHTSPLLSRL*LLLLCG
Trigger: ACCACACAAGAGGAGGAGCCACAGGCGGGATAACAA...GGGAGATGTGTGAACCTGGAGCACCGAGTGGCTACATCCACAGCCTCTTTCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR-3UTR CCA 90 bp GGCTGGGCCTCTGCTTACCACTCAACCTCAGGCTTCTCGGATGGAGGCTCAGCCATCTCCCCCTCTATTTaGCTCATAGAGGCTAACTTG +
Preference number: 2 (lower is better)
Translates to: GWASAYHSTSGFSDGGSAISPSI*LIEANL
Trigger: CAAGTTAGCCTCTATGAGCCAAATAGAGGGGGAGAT...GGCTGAGCCTCCATCCGAGAAGCCTGAGGTTGAGTGGTAAGCAGAGGCCCAGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR-3UTR CCA 90 bp CTCCTCTATGGAAACTCCATTCCCAGCAGACAGGGGTCTTCTGCCGCTGAAACCACACCACAGCAAGGATaGCTGGGCCTCTGCTTACCA +
Preference number: 2 (lower is better)
Translates to: LLYGNSIPSRQGSSAAETTPQQG*LGLCLP
Trigger: TGGTAAGCAGAGGCCCAGCCATCCTTGCTGTGGTGT...GGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAATGGAGTTTCCATAGAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR-3UTR CCA 90 bp AGAGGAGTTGGTGACACTCACGATGAGCAGCAGCAGCAGATACAGGGACATCATTCACGAACCAGTGGCTaGACAACCAGGAGAGCTGGC +
Preference number: 2 (lower is better)
Translates to: RGVGDTHDEQQQQIQGHHSRTSG*TTRRAG
Trigger: GCCAGCTCTCCTGGTTGTCCAGCCACTGGTTCGTGA...ATGATGTCCCTGTATCTGCTGCTGCTGCTCATCGTGAGTGTCACCAACTCCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR-3UTR TCA 90 bp AGAAACACGACAGTCCCTCTTGGGTGTCTTGAGTCAAAACAAGGCAGTCGCCTATCCTTTGGCTCTGGCTaGAGAGCCACCTCCCTAGAC +
Preference number: 2 (lower is better)
Translates to: RNTTVPLGCLESKQGSRLSFGSG*RATSLD
Trigger: GTCTAGGGAGGTGGCTCTTCAGCCAGAGCCAAAGGA...TAGGCGACTGCCTTGTTTTGACTCAAGACACCCAAGAGGGACTGTCGTGTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR-3UTR TCA 90 bp ACTCCATTCCCAGCAGACAGGGGTCTTCTGCCGCTGAAACCTGGCAGGAAGGAGACATTTGGTTCCGTTTaGGCTGTAATCAGCAGTTGG +
Preference number: 2 (lower is better)
Translates to: TPFPADRGLLPLKPGRKETFGSV*AVISSW
Trigger: CCAACTGCTGATTACAGCTCAAACGGAACCAAATGT...CTCCTTCCTGCCAGGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAATGGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR-3UTR CCA 90 bp GAGGAAGCAGAGGGTAGGACACCCCTGAAACTGACAAGTGAGGGGCCAGGGATCTTCACCCGCAGAAGCTaGTTATTGGTGACTACAAAG +
Preference number: 2 (lower is better)
Translates to: EEAEGRTPLKLTSEGPGIFTRRS*LLVTTK
Trigger: CTTTGTAGTCACCAATAACCAGCTTCTGCGGGTGAA...GATCCCTGGCCCCTCACTTGTCAGTTTCAGGGGTGTCCTACCCTCTGCTTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR CAA 90 bp GATCATCTCTTCACACGATTCCAGAAGTGGTGGAACACAGAGGAGTaGGTGACACTCACGATGAGCAGCAGCAGCAGATACAGGGACATC +
Preference number: 2 (lower is better)
Translates to: DHLFTRFQKWWNTEE*VTLTMSSSSRYRDI
Trigger: GATGTCCCTGTATCTGCTGCTGCTGCTCATCGTGAGTGTCACCAACTCCTCTGTGTTCCACCACTTCTGGAATCGTGTGAAGAGATGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR-3UTR CCA 90 bp GGTGCTCCAGGTTCACACATCTCCCCCTCTATTTGGCTCATAGAGGCTAACTTGCAGGACTTTTTCCTTTaGCTCTGGCTGAAGAGCCAC +
Preference number: 2 (lower is better)
Translates to: GAPGSHISPSIWLIEANLQDFFL*LWLKSH
Trigger: GTGGCTCTTCAGCCAGAGCCAAAGGAAAAAGTCCTG...CAAGTTAGCCTCTATGAGCCAAATAGAGGGGGAGATGTGTGAACCTGGAGCACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR-3UTR TCA 90 bp ATAAACACCACAGCAAGGATGGCTGGGCCTCTGCTTACCACTCAACCTCAGGCTCCACTGATATTTTTATaGGAAACACGACAGTCCCTC +
Preference number: 2 (lower is better)
Translates to: INTTARMAGPLLTTQPQAPLIFL*ETRQSL
Trigger: GAGGGACTGTCGTGTTTCTCATAAAAATATCAGTGG...AGCCTGAGGTTGAGTGGTAAGCAGAGGCCCAGCCATCCTTGCTGTGGTGTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR-3UTR TCA 90 bp TCAAAACAAGGCAGTCGCCTAATGATTTATTGTTCCCGTTGCACACATTCTGTCCAGGCTGATTTCCTGTaGGCTCAAGGCCAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: SKQGSRLMIYCSRCTHSVQADFL*AQGQPG
Trigger: ACCAGGCTGGCCTTGAGCTCACAGGAAATCAGCCTG...GACAGAATGTGTGCAACGGGAACAATAAATCATTAGGCGACTGCCTTGTTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR-3UTR CCA 90 bp GAGTCAAAACAAGGCAGTCGCCTAATGATTTATTGTTCCCGTTGCACACATTCTCAGGACTTTTTCCTTTaGCTCTGGCTGAAGAGCCAC +
Preference number: 2 (lower is better)
Translates to: ESKQGSRLMIYCSRCTHSQDFFL*LWLKSH
Trigger: GTGGCTCTTCAGCCAGAGCCAAAGGAAAAAGTCCTG...AGAATGTGTGCAACGGGAACAATAAATCATTAGGCGACTGCCTTGTTTTGACTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
3UTR-3UTR CCA 90 bp CAGGACTTTTTCCTTTGGCTCTGGCTGAAGAGCCACCTCCCTAGACTATTTAGGCAATCAGTACACTTATaGCATATAAAACTCGTCCTG +
Preference number: 2 (lower is better)
Translates to: QDFFLWLWLKSHLPRLFRQSVHL*HIKLVL
Trigger: CAGGACGAGTTTTATATGCCATAAGTGTACTGATTG...CCTAAATAGTCTAGGGAGGTGGCTCTTCAGCCAGAGCCAAAGGAAAAAGTCCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
3UTR GCA 72 bp GCCCATGGAGACCCGTGGCCCACTGAGGCAGGCCTCTaGTGTGAAGGCTGCCGGGCCCCTGAGAGCCTAGAG +
Preference number: 3 (lower is better)
Translates to: AHGDPWPTEAGL*CEGCRAPESLE
Trigger: CTCTAGGCTCTCAGGGGCCCGGCAGCCTTCACAGCAGAGGCCTGCCTCAGTGGGCCACGGGTCTCCATGGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR CCA 72 bp CAGGAGAGCTGGCTCGAGGCCCTCTTGGGCTGCTTCTaGGAATACACCAGCAGGTACTTCACCCGCAGAAGC +
Preference number: 3 (lower is better)
Translates to: QESWLEALLGCF*EYTSRYFTRRS
Trigger: GCTTCTGCGGGTGAAGTACCTGCTGGTGTATTCCCAGAAGCAGCCCAAGAGGGCCTCGAGCCAGCTCTCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR-3UTR CAA 90 bp GAGGAAGCAGAGGGTAGGACACCCCTGAAACTGACAAGTGAGGGGCCAGGGATCCTGCGGTCTATTTCCTaGGAATCCTCAGCCCCTGAG +
Preference number: 3 (lower is better)
Translates to: EEAEGRTPLKLTSEGPGILRSIS*ESSAPE
Trigger: CTCAGGGGCTGAGGATTCCAAGGAAATAGACCGCAG...GATCCCTGGCCCCTCACTTGTCAGTTTCAGGGGTGTCCTACCCTCTGCTTCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR CCA 72 bp ATGATCACGAACCAGTGGCTGGACAACCAGGAGAGCTaGCTCGAGGCCCTCTTGGGCTGCTTCTGGGAATAC +
Preference number: 3 (lower is better)
Translates to: MITNQWLDNQES*LEALLGCFWEY
Trigger: GTATTCCCAGAAGCAGCCCAAGAGGGCCTCGAGCCAGCTCTCCTGGTTGTCCAGCCACTGGTTCGTGATCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR-3UTR CAA 90 bp TCCGGGCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACAGCAGGACTTTTTCCTTaGGCTCTGGCTGAAGAGCCA +
Preference number: 3 (lower is better)
Translates to: SGPASIWAIVNTPRTAWTAGLFP*ALAEEP
Trigger: TGGCTCTTCAGCCAGAGCCAAAGGAAAAAGTCCTGC...TGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
3UTR-3UTR CAA 90 bp CACGATGAGCAGCAGCAGCAGATACAGGGACATCATGATCACGAACCAGTGGCTTGGCTCGAGGCCCTCTaGGGCTGCTTCTGGGAATAC +
Preference number: 3 (lower is better)
Translates to: HDEQQQQIQGHHDHEPVAWLEAL*GCFWEY
Trigger: GTATTCCCAGAAGCAGCCCAAGAGGGCCTCGAGCCA...AGCCACTGGTTCGTGATCATGATGTCCCTGTATCTGCTGCTGCTGCTCATCGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR TCA 72 bp TCGGCTGCGGTCTATTTCCTTGGAATCCTCAGCCCCTaGGACAGGCTGATTTCCTGTGAGCTCAAGGCCAGC +
Preference number: 3 (lower is better)
Translates to: SAAVYFLGILSP*DRLISCELKAS
Trigger: GCTGGCCTTGAGCTCACAGGAAATCAGCCTGTCTCAGGGGCTGAGGATTCCAAGGAAATAGACCGCAGCCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR CCA 72 bp GCAGGAAGGAGGGATAAACACCACAGCAAGGATGGCTaGGCCTCTGCTTACCACTCAACCTCAGGCTTCTCG +
Preference number: 3 (lower is better)
Translates to: AGRRDKHHSKDG*ASAYHSTSGFS
Trigger: CGAGAAGCCTGAGGTTGAGTGGTAAGCAGAGGCCCAGCCATCCTTGCTGTGGTGTTTATCCCTCCTTCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR TCA 72 bp AAACTCCATTCCCAGCAGACAGGGGTCTTCTGCCGCTaGAACCTGGCAGGAAGGAGGGATAAACACCACAGC +
Preference number: 3 (lower is better)
Translates to: KLHSQQTGVFCR*NLAGRRDKHHS
Trigger: GCTGTGGTGTTTATCCCTCCTTCCTGCCAGGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAATGGAGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR CCA 72 bp CATTTTGTTATCCCGCCTGTGGCTCCTCCTCTTGTGTaGTTAAGGAGGGAGGGGGTACAGCTGTGGCAGAGA +
Preference number: 3 (lower is better)
Translates to: HFVIPPVAPPLV*LRREGVQLWQR
Trigger: TCTCTGCCACAGCTGTACCCCCTCCCTCCTTAACCACACAAGAGGAGGAGCCACAGGCGGGATAACAAAATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR CCA 72 bp ATTCCCAGCAGACAGGGGTCTTCTGCCGCTGAAACCTaGCAGGAAGGAGGGATAAACACCACAGCAAGGATG +
Preference number: 3 (lower is better)
Translates to: IPSRQGSSAAET*QEGGINTTARM
Trigger: CATCCTTGCTGTGGTGTTTATCCCTCCTTCCTGCCAGGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR-3UTR CAA 90 bp GTGGATGTAGCCACTCGGTGCTCCAGGTTCACACATCTCCCCCTCTATTTGGCTGCAGGACTTTTTCCTTaGGCTCTGGCTGAAGAGCCA +
Preference number: 3 (lower is better)
Translates to: VDVATRCSRFTHLPLYLAAGLFP*ALAEEP
Trigger: TGGCTCTTCAGCCAGAGCCAAAGGAAAAAGTCCTGC...AGCCAAATAGAGGGGGAGATGTGTGAACCTGGAGCACCGAGTGGCTACATCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR TCA 72 bp CCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTaGCACACAGGAGGTAGAGGACAAGTTTCCATAAGG +
Preference number: 3 (lower is better)
Translates to: PANGPQTRPDRM*HTGGRGQVSIR
Trigger: CCTTATGGAAACTTGTCCTCTACCTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
3UTR TCA 72 bp CTGAAACTGACAAGTGAGGGGCCAGGGATCCCCCACTaGCTGGATTGTGTCTGGGCACATCAACAAAGGCAA +
Preference number: 3 (lower is better)
Translates to: LKLTSEGPGIPH*LDCVWAHQQRQ
Trigger: TTGCCTTTGTTGATGTGCCCAGACACAATCCAGTCAGTGGGGGATCCCTGGCCCCTCACTTGTCAGTTTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
3UTR TCA 72 bp TCTATTTCCTTGGAATCCTCAGCCCCTGAGACAGGCTaGTTTCCTGTGAGCTCAAGGCCAGCCTGGTCTGCA +
Preference number: 3 (lower is better)
Translates to: SISLESSAPETG*FPVSSRPAWSA
Trigger: TGCAGACCAGGCTGGCCTTGAGCTCACAGGAAATCAGCCTGTCTCAGGGGCTGAGGATTCCAAGGAAATAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR GCA 72 bp CAACACCAGAAAGAGGCTGTGGATGTAGCCACTCGGTaGTCCAGGTTCACACATCTCCCCCTCTATTTGGCT +
Preference number: 3 (lower is better)
Translates to: QHQKEAVDVATR*SRFTHLPLYLA
Trigger: AGCCAAATAGAGGGGGAGATGTGTGAACCTGGAGCACCGAGTGGCTACATCCACAGCCTCTTTCTGGTGTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR CCA 72 bp TTCCAAAAGGCATTAGCATCCGGGCCGGCCTCCATCTaGGCAATTGTAAACACACCTCGGACAGCTTGGACA +
Preference number: 3 (lower is better)
Translates to: FQKALASGPASI*AIVNTPRTAWT
Trigger: TGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGATGCTAATGCCTTTTGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
3UTR-3UTR CAA 90 bp CTCCTCTATGGAAACTCCATTCCCAGCAGACAGGGGTCTTCTGCCGCTGAAACCCACACCTCGGACAGCTaGGACACTTTGCTTTTAAAT +
Preference number: 3 (lower is better)
Translates to: LLYGNSIPSRQGSSAAETHTSDS*DTLLLN
Trigger: ATTTAAAAGCAAAGTGTCCAAGCTGTCCGAGGTGTG...GGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAATGGAGTTTCCATAGAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR-3UTR CAA 90 bp CAGAAAGAGGCTGTGGATGTAGCCACTCGGTGCTCCAGGTTCACACATCTCCCCAACATTTGGTTCCGTTaGAGCTGTAATCAGCAGTTG +
Preference number: 3 (lower is better)
Translates to: QKEAVDVATRCSRFTHLPNIWFR*SCNQQL
Trigger: CAACTGCTGATTACAGCTCAAACGGAACCAAATGTT...GGGGAGATGTGTGAACCTGGAGCACCGAGTGGCTACATCCACAGCCTCTTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR-3UTR CAA 90 bp GAACACAGAGGAGTTGGTGACACTCACGATGAGCAGCAGCAGCAGATACAGGGACGCAGAAGCTGGTTATaGGTGACTACAAAGTACTTA +
Preference number: 3 (lower is better)
Translates to: EHRGVGDTHDEQQQQIQGRRSWL*VTTKYL
Trigger: TAAGTACTTTGTAGTCACCAATAACCAGCTTCTGCG...TCCCTGTATCTGCTGCTGCTGCTCATCGTGAGTGTCACCAACTCCTCTGTGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
3UTR-3UTR CAA 90 bp GGTGCTCCAGGTTCACACATCTCCCCCTCTATTTGGCTCATAGAGGCTAACTTGTCGCCTAATGATTTATaGTTCCCGTTGCACACATTC +
Preference number: 3 (lower is better)
Translates to: GAPGSHISPSIWLIEANLSPNDL*FPLHTF
Trigger: GAATGTGTGCAACGGGAACAATAAATCATTAGGCGA...CAAGTTAGCCTCTATGAGCCAAATAGAGGGGGAGATGTGTGAACCTGGAGCACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR-3UTR CAA 90 bp TTGCTAGTTGTTAAATCTGCATTTTGTTATCCCGCCTGTGGCTCCTCCTCTTGTTCCCTCTTGGGTGTCTaGAGTCAAAACAAGGCAGTC +
Preference number: 3 (lower is better)
Translates to: LLVVKSAFCYPACGSSSCSLLGV*SQNKAV
Trigger: GACTGCCTTGTTTTGACTCAAGACACCCAAGAGGGA...ACAAGAGGAGGAGCCACAGGCGGGATAACAAAATGCAGATTTAACAACTAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR TCA 72 bp TTTAAATGCAGCAGGACTTTTTCCTTTGGCTCTGGCTaGAGAGCCACCTCCCTAGACTATTTAGGAGGAAGC +
Preference number: 3 (lower is better)
Translates to: FKCSRTFSFGSG*RATSLDYLGGS
Trigger: GCTTCCTCCTAAATAGTCTAGGGAGGTGGCTCTTCAGCCAGAGCCAAAGGAAAAAGTCCTGCTGCATTTAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
3UTR TCA 72 bp CGATGGAATTCCCAAACGATCCCACTGATATTTTTATaGGAAACACGACAGTCCCTCTTGGGTGTCTTGAGT +
Preference number: 3 (lower is better)
Translates to: RWNSQTIPLIFL*ETRQSLLGVLS
Trigger: ACTCAAGACACCCAAGAGGGACTGTCGTGTTTCTCATAAAAATATCAGTGGGATCGTTTGGGAATTCCATCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR TCA 72 bp CAGACTAAAGCCGATGGAATTCCCAAACGATCCCACTaGTATTTTTATGAGAAACACGACAGTCCCTCTTGG +
Preference number: 3 (lower is better)
Translates to: QTKADGIPKRSH*YFYEKHDSPSW
Trigger: CCAAGAGGGACTGTCGTGTTTCTCATAAAAATATCAGTGGGATCGTTTGGGAATTCCATCGGCTTTAGTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
3UTR GCA 72 bp AAACAAGGCAGTCGCCTAATGATTTATTGTTCCCGTTaGACACATTCTGTCTTCCAAAAGGCATTAGCATCC +
Preference number: 3 (lower is better)
Translates to: KQGSRLMIYCSR*THSVFQKALAS
Trigger: GGATGCTAATGCCTTTTGGAAGACAGAATGTGTGCAACGGGAACAATAAATCATTAGGCGACTGCCTTGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR GCA 90 bp GGCTGGGCCTCTGCTTACCACTCAACCTCAGGCTTCTCGGATGGAGGCTCAGCCCCGAGGCGAAGAGGCTaGAGCGGAGGTCCGCAGCCA +
Preference number: 4 (lower is better)
Translates to: GWASAYHSTSGFSDGGSAPRRRG*SGGPQP
Trigger: TGGCTGCGGACCTCCGCTGCAGCCTCTTCGCCTCGG...GGCTGAGCCTCCATCCGAGAAGCCTGAGGTTGAGTGGTAAGCAGAGGCCCAGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR GCA 90 bp TCCGGGCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACACACGTCGCGGCTCGCTaGCTCCCTGGCTGCTGCCCT +
Preference number: 4 (lower is better)
Translates to: SGPASIWAIVNTPRTAWTHVAAR*LPGCCP
Trigger: AGGGCAGCAGCCAGGGAGGCAGCGAGCCGCGACGTG...TGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR GCA 90 bp AAACTCGTCCTGTGCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGCCGAGGCGAAGAGGCTaGAGCGGAGGTCCGCAGCCA +
Preference number: 4 (lower is better)
Translates to: KLVLCTPANGPQTRPDRMPRRRG*SGGPQP
Trigger: TGGCTGCGGACCTCCGCTGCAGCCTCTTCGCCTCGG...CATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGCACAGGACGAGTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp GCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTGACACACAGGAGGGCTCGCTGCCTCCCTaGCTGCTGCCCTGTTGGAGA +
Preference number: 4 (lower is better)
Translates to: APLQMVPRLDLTGCDTQEGSLPP*LLPCWR
Trigger: TCTCCAACAGGGCAGCAGCCAGGGAGGCAGCGAGCC...CTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp TCCGGGCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACAGGCTCGCTGCCTCCCTaGCTGCTGCCCTGTTGGAGA +
Preference number: 4 (lower is better)
Translates to: SGPASIWAIVNTPRTAWTGSLPP*LLPCWR
Trigger: TCTCCAACAGGGCAGCAGCCAGGGAGGCAGCGAGCC...TGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp GCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTGACACACAGGAGGACAACCAGGAGAGCTaGCTCGAGGCCCTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: APLQMVPRLDLTGCDTQEDNQES*LEALLG
Trigger: GCCCAAGAGGGCCTCGAGCCAGCTCTCCTGGTTGTC...CTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR TCA 90 bp TCCGGGCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACACCCCCTCGCTGTGCTTaGTTCTTGCTCGGCTGCGGT +
Preference number: 4 (lower is better)
Translates to: SGPASIWAIVNTPRTAWTPPRCA*FLLGCG
Trigger: ACCGCAGCCGAGCAAGAATCAAGCACAGCGAGGGGG...TGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp CCAGAAAGAGGCTGTGGATGTAGCCACTCGGTGCTCCAGGTTCACACATCTCCCGGCTCGCTGCCTCCCTaGCTGCTGCCCTGTTGGAGA +
Preference number: 4 (lower is better)
Translates to: PERGCGCSHSVLQVHTSPGSLPP*LLPCWR
Trigger: TCTCCAACAGGGCAGCAGCCAGGGAGGCAGCGAGCC...GGGAGATGTGTGAACCTGGAGCACCGAGTGGCTACATCCACAGCCTCTTTCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR TCA 90 bp CAGAAAGAGGCTGTGGATGTAGCCACTCGGTGCTCCAGGTTCACACATCTCCCCCCCCCTCGCTGTGCTTaGTTCTTGCTCGGCTGCGGT +
Preference number: 4 (lower is better)
Translates to: QKEAVDVATRCSRFTHLPPPRCA*FLLGCG
Trigger: ACCGCAGCCGAGCAAGAATCAAGCACAGCGAGGGGG...GGGGAGATGTGTGAACCTGGAGCACCGAGTGGCTACATCCACAGCCTCTTTCTG
60% GC, longest homopolymer 9 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR GCA 90 bp TCCTGTGCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTGACACATGCCTCCCTGGCTGCTaGCCTGTTGGAGAGCTGCAT +
Preference number: 4 (lower is better)
Translates to: SCAPLQMVPRLDLTGCDTCLPGC*PVGELH
Trigger: ATGCAGCTCTCCAACAGGGCAGCAGCCAGGGAGGCA...TGTGTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGCACAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR GCA 90 bp TCCGGGCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACATGCCTCCCTGGCTGCTaGCCTGTTGGAGAGCTGCAT +
Preference number: 4 (lower is better)
Translates to: SGPASIWAIVNTPRTAWTCLPGC*PVGELH
Trigger: ATGCAGCTCTCCAACAGGGCAGCAGCCAGGGAGGCA...TGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp GCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTGACACACAGGAGTCACGAACCAGTGGCTaGACAACCAGGAGAGCTGGC +
Preference number: 4 (lower is better)
Translates to: APLQMVPRLDLTGCDTQESRTSG*TTRRAG
Trigger: GCCAGCTCTCCTGGTTGTCCAGCCACTGGTTCGTGA...CTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR GCA 90 bp AGAGGAGTTGGTGACACTCACGATGAGCAGCAGCAGCAGATACAGGGACATCATCCGAGGCGAAGAGGCTaGAGCGGAGGTCCGCAGCCA +
Preference number: 4 (lower is better)
Translates to: RGVGDTHDEQQQQIQGHHPRRRG*SGGPQP
Trigger: TGGCTGCGGACCTCCGCTGCAGCCTCTTCGCCTCGG...ATGATGTCCCTGTATCTGCTGCTGCTGCTCATCGTGAGTGTCACCAACTCCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
CDS-3UTR GCA 90 bp GCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTGACACACAGGAGTCAAGTTGGGTAACCTaGCAGTGTCCGCAAGCAGGG +
Preference number: 4 (lower is better)
Translates to: APLQMVPRLDLTGCDTQESSWVT*QCPQAG
Trigger: CCCTGCTTGCGGACACTGGCAGGTTACCCAACTTGA...CTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp AAACTCGTCCTGTGCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGATAGGAAATCCGGGGTaGGGACAGGTGTGTGAGGGG +
Preference number: 4 (lower is better)
Translates to: KLVLCTPANGPQTRPDRMIGNPG*GQVCEG
Trigger: CCCCTCACACACCTGTCCCCACCCCGGATTTCCTAT...CATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGCACAGGACGAGTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp CTCCTCTATGGAAACTCCATTCCCAGCAGACAGGGGTCTTCTGCCGCTGAAACCGACAACCAGGAGAGCTaGCTCGAGGCCCTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: LLYGNSIPSRQGSSAAETDNQES*LEALLG
Trigger: GCCCAAGAGGGCCTCGAGCCAGCTCTCCTGGTTGTC...GGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAATGGAGTTTCCATAGAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR GCA 90 bp CACACAGGAGGTAGAGGACAAGTTTCCATAAGGCACACGGTGAGTGGCCCCACTTGCCTCCCTGGCTGCTaGCCTGTTGGAGAGCTGCAT +
Preference number: 4 (lower is better)
Translates to: HTGGRGQVSIRHTVSGPTCLPGC*PVGELH
Trigger: ATGCAGCTCTCCAACAGGGCAGCAGCCAGGGAGGCA...AGTGGGGCCACTCACCGTGTGCCTTATGGAAACTTGTCCTCTACCTCCTGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR GCA 90 bp TCCGGGCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACAGGGGCGCCGGTCAGCTaGTGGATCTTTTCAAACTCT +
Preference number: 4 (lower is better)
Translates to: SGPASIWAIVNTPRTAWTGAPVS*WIFSNS
Trigger: AGAGTTTGAAAAGATCCAGCAGCTGACCGGCGCCCC...TGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR TCA 90 bp TCGTCCTGTGCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTGACCATGAGGACTATAAATaGGGGCCAGGCTCAAGTCAC +
Preference number: 4 (lower is better)
Translates to: SSCAPLQMVPRLDLTGCDHEDYK*GPGSSH
Trigger: GTGACTTGAGCCTGGCCCTCATTTATAGTCCTCATG...GTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGCACAGGACGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR GCA 90 bp AGGCAGCTTTGTGGGAATGAGGACCCTGGTGAGCCTATGGCTTGGACCCTTCTCTCAAGTTGGGTAACCTaGCAGTGTCCGCAAGCAGGG +
Preference number: 4 (lower is better)
Translates to: RQLCGNEDPGEPMAWTLLSSWVT*QCPQAG
Trigger: CCCTGCTTGCGGACACTGGCAGGTTACCCAACTTGA...GAGAAGGGTCCAAGCCATAGGCTCACCAGGGTCCTCATTCCCACAAAGCTGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR GCA 90 bp GCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACACTTTGGAGGCCCTCTTGGGCTaGTTCTGGGAATACACCAGC +
Preference number: 4 (lower is better)
Translates to: AGLHLGNCKHTSDSLDTLEALLG*FWEYTS
Trigger: GCTGGTGTATTCCCAGAAGCAGCCCAAGAGGGCCTC...CAAAGTGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR GCA 90 bp CCCAGACTCGACCTGACCGGATGTGACACACAGGAGGTAGAGGACAAGTTTCCAGAGGCCCTCTTGGGCTaGTTCTGGGAATACACCAGC +
Preference number: 4 (lower is better)
Translates to: PRLDLTGCDTQEVEDKFPEALLG*FWEYTS
Trigger: GCTGGTGTATTCCCAGAAGCAGCCCAAGAGGGCCTC...TGGAAACTTGTCCTCTACCTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp CACACAGGAGGTAGAGGACAAGTTTCCATAAGGCACACGGTGAGTGGCCCCACTATAGGAAATCCGGGGTaGGGACAGGTGTGTGAGGGG +
Preference number: 4 (lower is better)
Translates to: HTGGRGQVSIRHTVSGPTIGNPG*GQVCEG
Trigger: CCCCTCACACACCTGTCCCCACCCCGGATTTCCTAT...AGTGGGGCCACTCACCGTGTGCCTTATGGAAACTTGTCCTCTACCTCCTGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp CTCCTCTATGGAAACTCCATTCCCAGCAGACAGGGGTCTTCTGCCGCTGAAACCATAGGAAATCCGGGGTaGGGACAGGTGTGTGAGGGG +
Preference number: 4 (lower is better)
Translates to: LLYGNSIPSRQGSSAAETIGNPG*GQVCEG
Trigger: CCCCTCACACACCTGTCCCCACCCCGGATTTCCTAT...GGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAATGGAGTTTCCATAGAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CCA 90 bp GGCTGCGGTCTATTTCCTTGGAATCCTCAGCCCCTGAGACAGGCTGATTTCCTGATAGGAAATCCGGGGTaGGGACAGGTGTGTGAGGGG +
Preference number: 4 (lower is better)
Translates to: GCGLFPWNPQPLRQADFLIGNPG*GQVCEG
Trigger: CCCCTCACACACCTGTCCCCACCCCGGATTTCCTAT...CAGGAAATCAGCCTGTCTCAGGGGCTGAGGATTCCAAGGAAATAGACCGCAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
CDS-3UTR CCA 90 bp CACACAGGAGGTAGAGGACAAGTTTCCATAAGGCACACGGTGAGTGGCCCCACTTCACGAACCAGTGGCTaGACAACCAGGAGAGCTGGC +
Preference number: 4 (lower is better)
Translates to: HTGGRGQVSIRHTVSGPTSRTSG*TTRRAG
Trigger: GCCAGCTCTCCTGGTTGTCCAGCCACTGGTTCGTGA...AGTGGGGCCACTCACCGTGTGCCTTATGGAAACTTGTCCTCTACCTCCTGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp CTGAAGAGCCACCTCCCTAGACTATTTAGGAGGAAGCAGAGGGTAGGACACCCCTCACGAACCAGTGGCTaGACAACCAGGAGAGCTGGC +
Preference number: 4 (lower is better)
Translates to: LKSHLPRLFRRKQRVGHPSRTSG*TTRRAG
Trigger: GCCAGCTCTCCTGGTTGTCCAGCCACTGGTTCGTGA...GGGGTGTCCTACCCTCTGCTTCCTCCTAAATAGTCTAGGGAGGTGGCTCTTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp TCCGGGCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACAATGATCACGAACCAGTaGCTGGACAACCAGGAGAGC +
Preference number: 4 (lower is better)
Translates to: SGPASIWAIVNTPRTAWTMITNQ*LDNQES
Trigger: GCTCTCCTGGTTGTCCAGCCACTGGTTCGTGATCAT...TGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR TCA 90 bp CTGAAGAGCCACCTCCCTAGACTATTTAGGAGGAAGCAGAGGGTAGGACACCCCGGCTCAAGTCACTTGTaGGGTAGGTCCCCTCTCCAA +
Preference number: 4 (lower is better)
Translates to: LKSHLPRLFRRKQRVGHPGSSHL*GRSPLQ
Trigger: TTGGAGAGGGGACCTACCTCACAAGTGACTTGAGCC...GGGGTGTCCTACCCTCTGCTTCCTCCTAAATAGTCTAGGGAGGTGGCTCTTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR TCA 90 bp AGAAACACGACAGTCCCTCTTGGGTGTCTTGAGTCAAAACAAGGCAGTCGCCTACCCCCTCGCTGTGCTTaGTTCTTGCTCGGCTGCGGT +
Preference number: 4 (lower is better)
Translates to: RNTTVPLGCLESKQGSRLPPRCA*FLLGCG
Trigger: ACCGCAGCCGAGCAAGAATCAAGCACAGCGAGGGGG...TAGGCGACTGCCTTGTTTTGACTCAAGACACCCAAGAGGGACTGTCGTGTTTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CCA 90 bp TTTTTCCTTTGGCTCTGGCTGAAGAGCCACCTCCCTAGACTATTTAGGAGGAAGGGCTCGCTGCCTCCCTaGCTGCTGCCCTGTTGGAGA +
Preference number: 4 (lower is better)
Translates to: FFLWLWLKSHLPRLFRRKGSLPP*LLPCWR
Trigger: TCTCCAACAGGGCAGCAGCCAGGGAGGCAGCGAGCC...CTTCCTCCTAAATAGTCTAGGGAGGTGGCTCTTCAGCCAGAGCCAAAGGAAAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR TCA 90 bp AAACTCGTCCTGTGCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGGCAGGCCATTGTGAATaGTGGAGTGGAAGTTCTCTA +
Preference number: 4 (lower is better)
Translates to: KLVLCTPANGPQTRPDRMAGHCE*WSGSSL
Trigger: TAGAGAACTTCCACTCCATCATTCACAATGGCCTGC...CATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGCACAGGACGAGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR TCA 90 bp TCCGGGCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACAGCAGGCCATTGTGAATaGTGGAGTGGAAGTTCTCTA +
Preference number: 4 (lower is better)
Translates to: SGPASIWAIVNTPRTAWTAGHCE*WSGSSL
Trigger: TAGAGAACTTCCACTCCATCATTCACAATGGCCTGC...TGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR TCA 90 bp ACTCCATTCCCAGCAGACAGGGGTCTTCTGCCGCTGAAACCTGGCAGGAAGGAGCACTTGACATCTGGATaGTCGATGACCTCACACACA +
Preference number: 4 (lower is better)
Translates to: TPFPADRGLLPLKPGRKEHLTSG*SMTSHT
Trigger: TGTGTGTGAGGTCATCGATCATCCAGATGTCAAGTG...CTCCTTCCTGCCAGGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAATGGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR TCA 90 bp AAACTCGTCCTGTGCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGCACTTGACATCTGGATaGTCGATGACCTCACACACA +
Preference number: 4 (lower is better)
Translates to: KLVLCTPANGPQTRPDRMHLTSG*SMTSHT
Trigger: TGTGTGTGAGGTCATCGATCATCCAGATGTCAAGTG...CATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGCACAGGACGAGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR GCA 90 bp CACGATGAGCAGCAGCAGCAGATACAGGGACATCATGATCACGAACCAGTGGCTTCAAGTTGGGTAACCTaGCAGTGTCCGCAAGCAGGG +
Preference number: 4 (lower is better)
Translates to: HDEQQQQIQGHHDHEPVASSWVT*QCPQAG
Trigger: CCCTGCTTGCGGACACTGGCAGGTTACCCAACTTGA...AGCCACTGGTTCGTGATCATGATGTCCCTGTATCTGCTGCTGCTGCTCATCGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
CDS-3UTR GCA 90 bp ATAAACACCACAGCAAGGATGGCTGGGCCTCTGCTTACCACTCAACCTCAGGCTGGGGCGCCGGTCAGCTaGTGGATCTTTTCAAACTCT +
Preference number: 4 (lower is better)
Translates to: INTTARMAGPLLTTQPQAGAPVS*WIFSNS
Trigger: AGAGTTTGAAAAGATCCAGCAGCTGACCGGCGCCCC...AGCCTGAGGTTGAGTGGTAAGCAGAGGCCCAGCCATCCTTGCTGTGGTGTTTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CCA 90 bp GGCTGGGCCTCTGCTTACCACTCAACCTCAGGCTTCTCGGATGGAGGCTCAGCCGGATTGTCAGGATCTTaGAGGATAAAATCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: GWASAYHSTSGFSDGGSAGLSGS*RIKSSS
Trigger: TGAGCTGGATTTTATCCTCCAAGATCCTGACAATCC...GGCTGAGCCTCCATCCGAGAAGCCTGAGGTTGAGTGGTAAGCAGAGGCCCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CCA 90 bp GAGGAAGCAGAGGGTAGGACACCCCTGAAACTGACAAGTGAGGGGCCAGGGATCCAAACTCTGCCTTCTTaGCACTGTGGATTGTCAGGA +
Preference number: 4 (lower is better)
Translates to: EEAEGRTPLKLTSEGPGIQTLPS*HCGLSG
Trigger: TCCTGACAATCCACAGTGCCAAGAAGGCAGAGTTTG...GATCCCTGGCCCCTCACTTGTCAGTTTCAGGGGTGTCCTACCCTCTGCTTCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp GCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTGACACACAGGAGTTGGCACTTGACATCTaGATGATCGATGACCTCACA +
Preference number: 4 (lower is better)
Translates to: APLQMVPRLDLTGCDTQELALDI*MIDDLT
Trigger: TGTGAGGTCATCGATCATCCAGATGTCAAGTGCCAA...CTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp CTGAAGAGCCACCTCCCTAGACTATTTAGGAGGAAGCAGAGGGTAGGACACCCCCTCTTGGGCTGCTTCTaGGAATACACCAGCAGGTAC +
Preference number: 4 (lower is better)
Translates to: LKSHLPRLFRRKQRVGHPLLGCF*EYTSRY
Trigger: GTACCTGCTGGTGTATTCCCAGAAGCAGCCCAAGAG...GGGGTGTCCTACCCTCTGCTTCCTCCTAAATAGTCTAGGGAGGTGGCTCTTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp CACACAGGAGGTAGAGGACAAGTTTCCATAAGGCACACGGTGAGTGGCCCCACTCTCTTGGGCTGCTTCTaGGAATACACCAGCAGGTAC +
Preference number: 4 (lower is better)
Translates to: HTGGRGQVSIRHTVSGPTLLGCF*EYTSRY
Trigger: GTACCTGCTGGTGTATTCCCAGAAGCAGCCCAAGAG...AGTGGGGCCACTCACCGTGTGCCTTATGGAAACTTGTCCTCTACCTCCTGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR TCA 90 bp CTGAAGAGCCACCTCCCTAGACTATTTAGGAGGAAGCAGAGGGTAGGACACCCCCATGAGGACTATAAATaGGGGCCAGGCTCAAGTCAC +
Preference number: 4 (lower is better)
Translates to: LKSHLPRLFRRKQRVGHPHEDYK*GPGSSH
Trigger: GTGACTTGAGCCTGGCCCTCATTTATAGTCCTCATG...GGGGTGTCCTACCCTCTGCTTCCTCCTAAATAGTCTAGGGAGGTGGCTCTTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR GCA 90 bp TTTTTCCTTTGGCTCTGGCTGAAGAGCCACCTCCCTAGACTATTTAGGAGGAAGTGCCTCCCTGGCTGCTaGCCTGTTGGAGAGCTGCAT +
Preference number: 4 (lower is better)
Translates to: FFLWLWLKSHLPRLFRRKCLPGC*PVGELH
Trigger: ATGCAGCTCTCCAACAGGGCAGCAGCCAGGGAGGCA...CTTCCTCCTAAATAGTCTAGGGAGGTGGCTCTTCAGCCAGAGCCAAAGGAAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR GCA 90 bp CTTGAGTCAAAACAAGGCAGTCGCCTAATGATTTATTGTTCCCGTTGCACACATCCGAGGCGAAGAGGCTaGAGCGGAGGTCCGCAGCCA +
Preference number: 4 (lower is better)
Translates to: LESKQGSRLMIYCSRCTHPRRRG*SGGPQP
Trigger: TGGCTGCGGACCTCCGCTGCAGCCTCTTCGCCTCGG...ATGTGTGCAACGGGAACAATAAATCATTAGGCGACTGCCTTGTTTTGACTCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR GCA 90 bp GCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTGACACACAGGAGGATCTTTTCAAACTCTaGCTTCTTGGCACTGTGGAT +
Preference number: 4 (lower is better)
Translates to: APLQMVPRLDLTGCDTQEDLFKL*LLGTVD
Trigger: ATCCACAGTGCCAAGAAGGCAGAGTTTGAAAAGATC...CTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp TCGTCCTGTGCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTGACCATAAAATCTGGAGTTaGCCGGGTCAAAGTACTCAA +
Preference number: 4 (lower is better)
Translates to: SSCAPLQMVPRLDLTGCDHKIWS*PGQSTQ
Trigger: TTGAGTACTTTGACCCGGCCAACTCCAGATTTTATG...GTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGCACAGGACGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp AAACTCGTCCTGTGCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTGGTCTCATAAAATCTaGAGTTGGCCGGGTCAAAGT +
Preference number: 4 (lower is better)
Translates to: KLVLCTPANGPQTRPDRMWSHKI*SWPGQS
Trigger: ACTTTGACCCGGCCAACTCCAGATTTTATGAGACCA...CATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGCACAGGACGAGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp GAGGAAGCAGAGGGTAGGACACCCCTGAAACTGACAAGTGAGGGGCCAGGGATCTTGGCACTTGACATCTaGATGATCGATGACCTCACA +
Preference number: 4 (lower is better)
Translates to: EEAEGRTPLKLTSEGPGILALDI*MIDDLT
Trigger: TGTGAGGTCATCGATCATCCAGATGTCAAGTGCCAA...GATCCCTGGCCCCTCACTTGTCAGTTTCAGGGGTGTCCTACCCTCTGCTTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp TCCGGGCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACATTCACCCGCAGAAGCTaGTTATTGGTGACTACAAAG +
Preference number: 4 (lower is better)
Translates to: SGPASIWAIVNTPRTAWTFTRRS*LLVTTK
Trigger: CTTTGTAGTCACCAATAACCAGCTTCTGCGGGTGAA...TGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR TCA 90 bp CTGAAGAGCCACCTCCCTAGACTATTTAGGAGGAAGCAGAGGGTAGGACACCCCCACTTGACATCTGGATaGTCGATGACCTCACACACA +
Preference number: 4 (lower is better)
Translates to: LKSHLPRLFRRKQRVGHPHLTSG*SMTSHT
Trigger: TGTGTGTGAGGTCATCGATCATCCAGATGTCAAGTG...GGGGTGTCCTACCCTCTGCTTCCTCCTAAATAGTCTAGGGAGGTGGCTCTTCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR GCA 90 bp TCCTGTGCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTGACACAGATCTTTTCAAACTCTaGCTTCTTGGCACTGTGGAT +
Preference number: 4 (lower is better)
Translates to: SCAPLQMVPRLDLTGCDTDLFKL*LLGTVD
Trigger: ATCCACAGTGCCAAGAAGGCAGAGTTTGAAAAGATC...TGTGTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGCACAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp GTGGATGTAGCCACTCGGTGCTCCAGGTTCACACATCTCCCCCTCTATTTGGCTCAAACTCTGCCTTCTTaGCACTGTGGATTGTCAGGA +
Preference number: 4 (lower is better)
Translates to: VDVATRCSRFTHLPLYLAQTLPS*HCGLSG
Trigger: TCCTGACAATCCACAGTGCCAAGAAGGCAGAGTTTG...AGCCAAATAGAGGGGGAGATGTGTGAACCTGGAGCACCGAGTGGCTACATCCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CCA 90 bp TCCGGGCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACACATAAAATCTGGAGTTaGCCGGGTCAAAGTACTCAA +
Preference number: 4 (lower is better)
Translates to: SGPASIWAIVNTPRTAWTHKIWS*PGQSTQ
Trigger: TTGAGTACTTTGACCCGGCCAACTCCAGATTTTATG...TGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp CCAGAAAGAGGCTGTGGATGTAGCCACTCGGTGCTCCAGGTTCACACATCTCCCTGGTCTCATAAAATCTaGAGTTGGCCGGGTCAAAGT +
Preference number: 4 (lower is better)
Translates to: PERGCGCSHSVLQVHTSPWSHKI*SWPGQS
Trigger: ACTTTGACCCGGCCAACTCCAGATTTTATGAGACCA...GGGAGATGTGTGAACCTGGAGCACCGAGTGGCTACATCCACAGCCTCTTTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CCA 90 bp AGGCAGCTTTGTGGGAATGAGGACCCTGGTGAGCCTATGGCTTGGACCCTTCTCTTGGCACTTGACATCTaGATGATCGATGACCTCACA +
Preference number: 4 (lower is better)
Translates to: RQLCGNEDPGEPMAWTLLLALDI*MIDDLT
Trigger: TGTGAGGTCATCGATCATCCAGATGTCAAGTGCCAA...GAGAAGGGTCCAAGCCATAGGCTCACCAGGGTCCTCATTCCCACAAAGCTGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CCA 90 bp TTCTCCATAACAACACCAGAAAGAGGCTGTGGATGTAGCCACTCGGTGCTCCAGCTCTTGGGCTGCTTCTaGGAATACACCAGCAGGTAC +
Preference number: 4 (lower is better)
Translates to: FSITTPERGCGCSHSVLQLLGCF*EYTSRY
Trigger: GTACCTGCTGGTGTATTCCCAGAAGCAGCCCAAGAG...CTGGAGCACCGAGTGGCTACATCCACAGCCTCTTTCTGGTGTTGTTATGGAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CCA 90 bp GGTGCTCCAGGTTCACACATCTCCCCCTCTATTTGGCTCATAGAGGCTAACTTGATGATCACGAACCAGTaGCTGGACAACCAGGAGAGC +
Preference number: 4 (lower is better)
Translates to: GAPGSHISPSIWLIEANLMITNQ*LDNQES
Trigger: GCTCTCCTGGTTGTCCAGCCACTGGTTCGTGATCAT...CAAGTTAGCCTCTATGAGCCAAATAGAGGGGGAGATGTGTGAACCTGGAGCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CCA 90 bp CAGCAGCAGCAGATACAGGGACATCATGATCACGAACCAGTGGCTGGACAACCACAAACTCTGCCTTCTTaGCACTGTGGATTGTCAGGA +
Preference number: 4 (lower is better)
Translates to: QQQQIQGHHDHEPVAGQPQTLPS*HCGLSG
Trigger: TCCTGACAATCCACAGTGCCAAGAAGGCAGAGTTTG...TGGTTGTCCAGCCACTGGTTCGTGATCATGATGTCCCTGTATCTGCTGCTGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
CDS-3UTR CCA 90 bp GCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACACTTTGTTGGCACTTGACATCTaGATGATCGATGACCTCACA +
Preference number: 4 (lower is better)
Translates to: AGLHLGNCKHTSDSLDTLLALDI*MIDDLT
Trigger: TGTGAGGTCATCGATCATCCAGATGTCAAGTGCCAA...CAAAGTGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp CTCCTCTATGGAAACTCCATTCCCAGCAGACAGGGGTCTTCTGCCGCTGAAACCTTCACCCGCAGAAGCTaGTTATTGGTGACTACAAAG +
Preference number: 4 (lower is better)
Translates to: LLYGNSIPSRQGSSAAETFTRRS*LLVTTK
Trigger: CTTTGTAGTCACCAATAACCAGCTTCTGCGGGTGAA...GGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAATGGAGTTTCCATAGAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CCA 90 bp TCAAAACAAGGCAGTCGCCTAATGATTTATTGTTCCCGTTGCACACATTCTGTCGACAACCAGGAGAGCTaGCTCGAGGCCCTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: SKQGSRLMIYCSRCTHSVDNQES*LEALLG
Trigger: GCCCAAGAGGGCCTCGAGCCAGCTCTCCTGGTTGTC...GACAGAATGTGTGCAACGGGAACAATAAATCATTAGGCGACTGCCTTGTTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
3UTR CAA 72 bp TTCACACGATTCCAGAAGTGGTGGAACACAGAGGAGTaGGTGACACTCACGATGAGCAGCAGCAGCAGATAC +
Preference number: 4 (lower is better)
Translates to: FTRFQKWWNTEE*VTLTMSSSSRY
Trigger: GTATCTGCTGCTGCTGCTCATCGTGAGTGTCACCAACTCCTCTGTGTTCCACCACTTCTGGAATCGTGTGAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
CDS-3UTR TCA 90 bp GGTGCTCCAGGTTCACACATCTCCCCCTCTATTTGGCTCATAGAGGCTAACTTGGCAGGCCATTGTGAATaGTGGAGTGGAAGTTCTCTA +
Preference number: 4 (lower is better)
Translates to: GAPGSHISPSIWLIEANLAGHCE*WSGSSL
Trigger: TAGAGAACTTCCACTCCATCATTCACAATGGCCTGC...CAAGTTAGCCTCTATGAGCCAAATAGAGGGGGAGATGTGTGAACCTGGAGCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR GCA 90 bp GTCCCCAGACTCGACCTGACCGGATGTGACACACAGGAGGTAGAGGACAAGTTTGATCTTTTCAAACTCTaGCTTCTTGGCACTGTGGAT +
Preference number: 4 (lower is better)
Translates to: VPRLDLTGCDTQEVEDKFDLFKL*LLGTVD
Trigger: ATCCACAGTGCCAAGAAGGCAGAGTTTGAAAAGATC...AAACTTGTCCTCTACCTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR GCA 90 bp GCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACACTTTGGATCTTTTCAAACTCTaGCTTCTTGGCACTGTGGAT +
Preference number: 4 (lower is better)
Translates to: AGLHLGNCKHTSDSLDTLDLFKL*LLGTVD
Trigger: ATCCACAGTGCCAAGAAGGCAGAGTTTGAAAAGATC...CAAAGTGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp CCCAGACTCGACCTGACCGGATGTGACACACAGGAGGTAGAGGACAAGTTTCCAGTTTGTCTGTGTCTCTaGAAGACTGTAGAAGTTCCT +
Preference number: 4 (lower is better)
Translates to: PRLDLTGCDTQEVEDKFPVCLCL*KTVEVP
Trigger: AGGAACTTCTACAGTCTTCCAGAGACACAGACAAAC...TGGAAACTTGTCCTCTACCTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp CACACAGGAGGTAGAGGACAAGTTTCCATAAGGCACACGGTGAGTGGCCCCACTGGATTGTCAGGATCTTaGAGGATAAAATCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: HTGGRGQVSIRHTVSGPTGLSGS*RIKSSS
Trigger: TGAGCTGGATTTTATCCTCCAAGATCCTGACAATCC...AGTGGGGCCACTCACCGTGTGCCTTATGGAAACTTGTCCTCTACCTCCTGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp CACACAGGAGGTAGAGGACAAGTTTCCATAAGGCACACGGTGAGTGGCCCCACTCATAAAATCTGGAGTTaGCCGGGTCAAAGTACTCAA +
Preference number: 4 (lower is better)
Translates to: HTGGRGQVSIRHTVSGPTHKIWS*PGQSTQ
Trigger: TTGAGTACTTTGACCCGGCCAACTCCAGATTTTATG...AGTGGGGCCACTCACCGTGTGCCTTATGGAAACTTGTCCTCTACCTCCTGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp ATAAACACCACAGCAAGGATGGCTGGGCCTCTGCTTACCACTCAACCTCAGGCTTGGTCTCATAAAATCTaGAGTTGGCCGGGTCAAAGT +
Preference number: 4 (lower is better)
Translates to: INTTARMAGPLLTTQPQAWSHKI*SWPGQS
Trigger: ACTTTGACCCGGCCAACTCCAGATTTTATGAGACCA...AGCCTGAGGTTGAGTGGTAAGCAGAGGCCCAGCCATCCTTGCTGTGGTGTTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CCA 90 bp CACGATGAGCAGCAGCAGCAGATACAGGGACATCATGATCACGAACCAGTGGCTTGGTCTCATAAAATCTaGAGTTGGCCGGGTCAAAGT +
Preference number: 4 (lower is better)
Translates to: HDEQQQQIQGHHDHEPVAWSHKI*SWPGQS
Trigger: ACTTTGACCCGGCCAACTCCAGATTTTATGAGACCA...AGCCACTGGTTCGTGATCATGATGTCCCTGTATCTGCTGCTGCTGCTCATCGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
CDS-3UTR TCA 90 bp CAGGACTTTTTCCTTTGGCTCTGGCTGAAGAGCCACCTCCCTAGACTATTTAGGGCAGGCCATTGTGAATaGTGGAGTGGAAGTTCTCTA +
Preference number: 4 (lower is better)
Translates to: QDFFLWLWLKSHLPRLFRAGHCE*WSGSSL
Trigger: TAGAGAACTTCCACTCCATCATTCACAATGGCCTGC...CCTAAATAGTCTAGGGAGGTGGCTCTTCAGCCAGAGCCAAAGGAAAAAGTCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR TCA 90 bp TTTTTCCTTTGGCTCTGGCTGAAGAGCCACCTCCCTAGACTATTTAGGAGGAAGCATGAGGACTATAAATaGGGGCCAGGCTCAAGTCAC +
Preference number: 4 (lower is better)
Translates to: FFLWLWLKSHLPRLFRRKHEDYK*GPGSSH
Trigger: GTGACTTGAGCCTGGCCCTCATTTATAGTCCTCATG...CTTCCTCCTAAATAGTCTAGGGAGGTGGCTCTTCAGCCAGAGCCAAAGGAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR GCA 90 bp GAGTCAAAACAAGGCAGTCGCCTAATGATTTATTGTTCCCGTTGCACACATTCTGAGGCCCTCTTGGGCTaGTTCTGGGAATACACCAGC +
Preference number: 4 (lower is better)
Translates to: ESKQGSRLMIYCSRCTHSEALLG*FWEYTS
Trigger: GCTGGTGTATTCCCAGAAGCAGCCCAAGAGGGCCTC...AGAATGTGTGCAACGGGAACAATAAATCATTAGGCGACTGCCTTGTTTTGACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR GCA 90 bp GAGTCAAAACAAGGCAGTCGCCTAATGATTTATTGTTCCCGTTGCACACATTCTGGGGCGCCGGTCAGCTaGTGGATCTTTTCAAACTCT +
Preference number: 4 (lower is better)
Translates to: ESKQGSRLMIYCSRCTHSGAPVS*WIFSNS
Trigger: AGAGTTTGAAAAGATCCAGCAGCTGACCGGCGCCCC...AGAATGTGTGCAACGGGAACAATAAATCATTAGGCGACTGCCTTGTTTTGACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
CDS-3UTR CCA 90 bp TTTTTCCTTTGGCTCTGGCTGAAGAGCCACCTCCCTAGACTATTTAGGAGGAAGCATAAAATCTGGAGTTaGCCGGGTCAAAGTACTCAA +
Preference number: 4 (lower is better)
Translates to: FFLWLWLKSHLPRLFRRKHKIWS*PGQSTQ
Trigger: TTGAGTACTTTGACCCGGCCAACTCCAGATTTTATG...CTTCCTCCTAAATAGTCTAGGGAGGTGGCTCTTCAGCCAGAGCCAAAGGAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp CTTGAGTCAAAACAAGGCAGTCGCCTAATGATTTATTGTTCCCGTTGCACACATCAAACTCTGCCTTCTTaGCACTGTGGATTGTCAGGA +
Preference number: 4 (lower is better)
Translates to: LESKQGSRLMIYCSRCTHQTLPS*HCGLSG
Trigger: TCCTGACAATCCACAGTGCCAAGAAGGCAGAGTTTG...ATGTGTGCAACGGGAACAATAAATCATTAGGCGACTGCCTTGTTTTGACTCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CCA 90 bp GAGTCAAAACAAGGCAGTCGCCTAATGATTTATTGTTCCCGTTGCACACATTCTGGATTGTCAGGATCTTaGAGGATAAAATCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: ESKQGSRLMIYCSRCTHSGLSGS*RIKSSS
Trigger: TGAGCTGGATTTTATCCTCCAAGATCCTGACAATCC...AGAATGTGTGCAACGGGAACAATAAATCATTAGGCGACTGCCTTGTTTTGACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
3UTR CAA 72 bp AAAACAAGGCAGTCGCCTAATGATTTATTGTTCCCGTaGCACACATTCTGTCTTCCAAAAGGCATTAGCATC +
Preference number: 4 (lower is better)
Translates to: KTRQSPNDLLFP*HTFCLPKGISI
Trigger: GATGCTAATGCCTTTTGGAAGACAGAATGTGTGCAACGGGAACAATAAATCATTAGGCGACTGCCTTGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CCA 90 bp AGACTAAAGCCGATGGAATTCCCAAACGATCCCACTGATATTTTTATGAGAAACTTCACCCGCAGAAGCTaGTTATTGGTGACTACAAAG +
Preference number: 4 (lower is better)
Translates to: RLKPMEFPNDPTDIFMRNFTRRS*LLVTTK
Trigger: CTTTGTAGTCACCAATAACCAGCTTCTGCGGGTGAA...GTTTCTCATAAAAATATCAGTGGGATCGTTTGGGAATTCCATCGGCTTTAGTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CCA 90 bp AGACTAAAGCCGATGGAATTCCCAAACGATCCCACTGATATTTTTATGAGAAACGGATTGTCAGGATCTTaGAGGATAAAATCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: RLKPMEFPNDPTDIFMRNGLSGS*RIKSSS
Trigger: TGAGCTGGATTTTATCCTCCAAGATCCTGACAATCC...GTTTCTCATAAAAATATCAGTGGGATCGTTTGGGAATTCCATCGGCTTTAGTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS GCA 90 bp GCACCGAGTCCCGCTTGTAGCTCTGCAGCGCCGAGGCGAAGAGGCTaGAGCGGAGGTCCGCAGCCAGCACGTCGCGGCTCGCTGCCTCCC +
Preference number: 5 (lower is better)
Translates to: APSPACSSAAPRRRG*SGGPQPARRGSLPP
Trigger: GGGAGGCAGCGAGCCGCGACGTGCTGGCTGCGGACCTCCGCTGCAGCCTCTTCGCCTCGGCGCTGCAGAGCTACAAGCGGGACTCGGTGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp CCAGAAAGAGGCTGTGGATGTAGCCACTCGGTGCTCCAGGTTCACACATCTCCCTGGCTCGAGGCCCTCTaGGGCTGCTTCTGGGAATAC +
Preference number: 5 (lower is better)
Translates to: PERGCGCSHSVLQVHTSPWLEAL*GCFWEY
Trigger: GTATTCCCAGAAGCAGCCCAAGAGGGCCTCGAGCCA...GGGAGATGTGTGAACCTGGAGCACCGAGTGGCTACATCCACAGCCTCTTTCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CAA 90 bp GTCCCCAGACTCGACCTGACCGGATGTGACACACAGGAGGTAGAGGACAAGTTTTGGCTCGAGGCCCTCTaGGGCTGCTTCTGGGAATAC +
Preference number: 5 (lower is better)
Translates to: VPRLDLTGCDTQEVEDKFWLEAL*GCFWEY
Trigger: GTATTCCCAGAAGCAGCCCAAGAGGGCCTCGAGCCA...AAACTTGTCCTCTACCTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp CCCAGACTCGACCTGACCGGATGTGACACACAGGAGGTAGAGGACAAGTTTCCATGGCTCGAGGCCCTCTaGGGCTGCTTCTGGGAATAC +
Preference number: 5 (lower is better)
Translates to: PRLDLTGCDTQEVEDKFPWLEAL*GCFWEY
Trigger: GTATTCCCAGAAGCAGCCCAAGAGGGCCTCGAGCCA...TGGAAACTTGTCCTCTACCTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp TCCGGGCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACACCAAACAGAGAAGTCTaGTTCAGGTGGCAGTGCAGG +
Preference number: 5 (lower is better)
Translates to: SGPASIWAIVNTPRTAWTPNREV*FRWQCR
Trigger: CCTGCACTGCCACCTGAACAAGACTTCTCTGTTTGG...TGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp TCCTGTGCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTGACACACCAAACAGAGAAGTCTaGTTCAGGTGGCAGTGCAGG +
Preference number: 5 (lower is better)
Translates to: SCAPLQMVPRLDLTGCDTPNREV*FRWQCR
Trigger: CCTGCACTGCCACCTGAACAAGACTTCTCTGTTTGG...TGTGTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGCACAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp CCCAGACTCGACCTGACCGGATGTGACACACAGGAGGTAGAGGACAAGTTTCCAAGGTCCCAGGCCTGTTaGTCTGTGTCTCTGGAAGAC +
Preference number: 5 (lower is better)
Translates to: PRLDLTGCDTQEVEDKFPRSQAC*SVSLED
Trigger: GTCTTCCAGAGACACAGACAAACAGGCCTGGGACCT...TGGAAACTTGTCCTCTACCTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp CACACAGGAGGTAGAGGACAAGTTTCCATAAGGCACACGGTGAGTGGCCCCACTAGGTCCCAGGCCTGTTaGTCTGTGTCTCTGGAAGAC +
Preference number: 5 (lower is better)
Translates to: HTGGRGQVSIRHTVSGPTRSQAC*SVSLED
Trigger: GTCTTCCAGAGACACAGACAAACAGGCCTGGGACCT...AGTGGGGCCACTCACCGTGTGCCTTATGGAAACTTGTCCTCTACCTCCTGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp GTCCCCAGACTCGACCTGACCGGATGTGACACACAGGAGGTAGAGGACAAGTTTAGGTCCCAGGCCTGTTaGTCTGTGTCTCTGGAAGAC +
Preference number: 5 (lower is better)
Translates to: VPRLDLTGCDTQEVEDKFRSQAC*SVSLED
Trigger: GTCTTCCAGAGACACAGACAAACAGGCCTGGGACCT...AAACTTGTCCTCTACCTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp TCCTGTGCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTGACACATCAAACTCTGCCTTCTaGGCACTGTGGATTGTCAGG +
Preference number: 5 (lower is better)
Translates to: SCAPLQMVPRLDLTGCDTSNSAF*ALWIVR
Trigger: CCTGACAATCCACAGTGCCAAGAAGGCAGAGTTTGA...TGTGTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGCACAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS GCA 90 bp CTGTGTCTCTGGAAGACTGTAGAAGTTCCTTCAAGTTGGGTAACCTaGCAGTGTCCGCAAGCAGGGCCTCGAAGTCCTTACAGTCGTGGC +
Preference number: 5 (lower is better)
Translates to: LCLWKTVEVPSSWVT*QCPQAGPRSPYSRG
Trigger: GCCACGACTGTAAGGACTTCGAGGCCCTGCTTGCGGACACTGGCAGGTTACCCAACTTGAAGGAACTTCTACAGTCTTCCAGAGACACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CCA 90 bp AGTTGGCCGGGTCAAAGTACTCAATTTCAAATAGGAAATCCGGGGTaGGGACAGGTGTGTGAGGGGCGCCGGTCAGCTGCTGGATCTTTT +
Preference number: 5 (lower is better)
Translates to: SWPGQSTQFQIGNPG*GQVCEGRRSAAGSF
Trigger: AAAAGATCCAGCAGCTGACCGGCGCCCCTCACACACCTGTCCCCACCCCGGATTTCCTATTTGAAATTGAGTACTTTGACCCGGCCAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp ACTCCATTCCCAGCAGACAGGGGTCTTCTGCCGCTGAAACCTGGCAGGAAGGAGTCTTGGCACTGTGGATaGTCAGGATCTTGGAGGATA +
Preference number: 5 (lower is better)
Translates to: TPFPADRGLLPLKPGRKESWHCG*SGSWRI
Trigger: TATCCTCCAAGATCCTGACAATCCACAGTGCCAAGA...CTCCTTCCTGCCAGGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAATGGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CAA 90 bp TCCGGGCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACATCTTGGCACTGTGGATaGTCAGGATCTTGGAGGATA +
Preference number: 5 (lower is better)
Translates to: SGPASIWAIVNTPRTAWTSWHCG*SGSWRI
Trigger: TATCCTCCAAGATCCTGACAATCCACAGTGCCAAGA...TGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp GAGGAAGCAGAGGGTAGGACACCCCTGAAACTGACAAGTGAGGGGCCAGGGATCTCTTGGCACTGTGGATaGTCAGGATCTTGGAGGATA +
Preference number: 5 (lower is better)
Translates to: EEAEGRTPLKLTSEGPGISWHCG*SGSWRI
Trigger: TATCCTCCAAGATCCTGACAATCCACAGTGCCAAGA...GATCCCTGGCCCCTCACTTGTCAGTTTCAGGGGTGTCCTACCCTCTGCTTCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp CTCCTCTATGGAAACTCCATTCCCAGCAGACAGGGGTCTTCTGCCGCTGAAACCCCAAACAGAGAAGTCTaGTTCAGGTGGCAGTGCAGG +
Preference number: 5 (lower is better)
Translates to: LLYGNSIPSRQGSSAAETPNREV*FRWQCR
Trigger: CCTGCACTGCCACCTGAACAAGACTTCTCTGTTTGG...GGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAATGGAGTTTCCATAGAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CAA 90 bp CTGAAGAGCCACCTCCCTAGACTATTTAGGAGGAAGCAGAGGGTAGGACACCCCTCAAACTCTGCCTTCTaGGCACTGTGGATTGTCAGG +
Preference number: 5 (lower is better)
Translates to: LKSHLPRLFRRKQRVGHPSNSAF*ALWIVR
Trigger: CCTGACAATCCACAGTGCCAAGAAGGCAGAGTTTGA...GGGGTGTCCTACCCTCTGCTTCCTCCTAAATAGTCTAGGGAGGTGGCTCTTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp GTCCCCAGACTCGACCTGACCGGATGTGACACACAGGAGGTAGAGGACAAGTTTTCAAACTCTGCCTTCTaGGCACTGTGGATTGTCAGG +
Preference number: 5 (lower is better)
Translates to: VPRLDLTGCDTQEVEDKFSNSAF*ALWIVR
Trigger: CCTGACAATCCACAGTGCCAAGAAGGCAGAGTTTGA...AAACTTGTCCTCTACCTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp CACACAGGAGGTAGAGGACAAGTTTCCATAAGGCACACGGTGAGTGGCCCCACTTCAAACTCTGCCTTCTaGGCACTGTGGATTGTCAGG +
Preference number: 5 (lower is better)
Translates to: HTGGRGQVSIRHTVSGPTSNSAF*ALWIVR
Trigger: CCTGACAATCCACAGTGCCAAGAAGGCAGAGTTTGA...AGTGGGGCCACTCACCGTGTGCCTTATGGAAACTTGTCCTCTACCTCCTGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp GAGGAAGCAGAGGGTAGGACACCCCTGAAACTGACAAGTGAGGGGCCAGGGATCTCCCTTCTTCTTGATTaGGCACTTGACATCTGGATG +
Preference number: 5 (lower is better)
Translates to: EEAEGRTPLKLTSEGPGISLLLD*ALDIWM
Trigger: CATCCAGATGTCAAGTGCCAAATCAAGAAGAAGGGA...GATCCCTGGCCCCTCACTTGTCAGTTTCAGGGGTGTCCTACCCTCTGCTTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
CDS TCA 90 bp GTGAGACTCTGTCCCTTCTTCTTGATTTGGCACTTGACATCTGGATaGTCGATGACCTCACACACAGCTACGCAGCTCAGGATCGGGCCA +
Preference number: 5 (lower is better)
Translates to: VRLCPFFLIWHLTSG*SMTSHTATQLRIGP
Trigger: TGGCCCGATCCTGAGCTGCGTAGCTGTGTGTGAGGTCATCGATCATCCAGATGTCAAGTGCCAAATCAAGAAGAAGGGACAGAGTCTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
CDS CCA 90 bp CCTGTTTGTCTGTGTCTCTGGAAGACTGTAGAAGTTCCTTCAAGTTaGGTAACCTGCCAGTGTCCGCAAGCAGGGCCTCGAAGTCCTTAC +
Preference number: 5 (lower is better)
Translates to: PVCLCLWKTVEVPSS*VTCQCPQAGPRSPY
Trigger: GTAAGGACTTCGAGGCCCTGCTTGCGGACACTGGCAGGTTACCCAACTTGAAGGAACTTCTACAGTCTTCCAGAGACACAGACAAACAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp TGCTTCTGGGAATACACCAGCAGGTACTTCACCCGCAGAAGCTGGTTATTGGTGCCAAACAGAGAAGTCTaGTTCAGGTGGCAGTGCAGG +
Preference number: 5 (lower is better)
Translates to: CFWEYTSRYFTRRSWLLVPNREV*FRWQCR
Trigger: CCTGCACTGCCACCTGAACAAGACTTCTCTGTTTGG...CACCAATAACCAGCTTCTGCGGGTGAAGTACCTGCTGGTGTATTCCCAGAAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
CDS-3UTR CAA 90 bp TCCTGTGCACCCCTGCAAATGGTCCCCAGACTCGACCTGACCGGATGTGACACAATCCTTCTTCTTGATTaGGCACTTGACATCTGGATG +
Preference number: 5 (lower is better)
Translates to: SCAPLQMVPRLDLTGCDTILLLD*ALDIWM
Trigger: CATCCAGATGTCAAGTGCCAAATCAAGAAGAAGGAT...TGTGTCACATCCGGTCAGGTCGAGTCTGGGGACCATTTGCAGGGGTGCACAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS TCA 90 bp CAAACAGAGAAGTCTTGTTCAGGTGGCAGTGCAGGCCATTGTGAATaGTGGAGTGGAAGTTCTCTAGGCGGCTACCATGGAAGGCATAGA +
Preference number: 5 (lower is better)
Translates to: QTEKSCSGGSAGHCE*WSGSSLGGYHGRHR
Trigger: TCTATGCCTTCCATGGTAGCCGCCTAGAGAACTTCCACTCCATCATTCACAATGGCCTGCACTGCCACCTGAACAAGACTTCTCTGTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CCA 90 bp CATAGTGAGACTCTGTCCCTTCTTCTTGATTTGGCACTTGACATCTaGATGATCGATGACCTCACACACAGCTACGCAGCTCAGGATCGG +
Preference number: 5 (lower is better)
Translates to: HSETLSLLLDLALDI*MIDDLTHSYAAQDR
Trigger: CCGATCCTGAGCTGCGTAGCTGTGTGTGAGGTCATCGATCATCCAGATGTCAAGTGCCAAATCAAGAAGAAGGGACAGAGTCTCACTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
CDS-3UTR CAA 90 bp TTCTCCATAACAACACCAGAAAGAGGCTGTGGATGTAGCCACTCGGTGCTCCAGTCTTGGCACTGTGGATaGTCAGGATCTTGGAGGATA +
Preference number: 5 (lower is better)
Translates to: FSITTPERGCGCSHSVLQSWHCG*SGSWRI
Trigger: TATCCTCCAAGATCCTGACAATCCACAGTGCCAAGA...CTGGAGCACCGAGTGGCTACATCCACAGCCTCTTTCTGGTGTTGTTATGGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CAA 90 bp GTCCCCAGACTCGACCTGACCGGATGTGACACACAGGAGGTAGAGGACAAGTTTATCCTTCTTCTTGATTaGGCACTTGACATCTGGATG +
Preference number: 5 (lower is better)
Translates to: VPRLDLTGCDTQEVEDKFILLLD*ALDIWM
Trigger: CATCCAGATGTCAAGTGCCAAATCAAGAAGAAGGAT...AAACTTGTCCTCTACCTCCTGTGTGTCACATCCGGTCAGGTCGAGTCTGGGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp CTCCTCTATGGAAACTCCATTCCCAGCAGACAGGGGTCTTCTGCCGCTGAAACCATCCTTCTTCTTGATTaGGCACTTGACATCTGGATG +
Preference number: 5 (lower is better)
Translates to: LLYGNSIPSRQGSSAAETILLLD*ALDIWM
Trigger: CATCCAGATGTCAAGTGCCAAATCAAGAAGAAGGAT...GGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAATGGAGTTTCCATAGAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CAA 90 bp GCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACACTTTGCTGCGGTCTATTTCCTaGGAATCCTTCTTCTTGATT +
Preference number: 5 (lower is better)
Translates to: AGLHLGNCKHTSDSLDTLLRSIS*ESFFLI
Trigger: AATCAAGAAGAAGGATTCCAAGGAAATAGACCGCAG...CAAAGTGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp CACACAGGAGGTAGAGGACAAGTTTCCATAAGGCACACGGTGAGTGGCCCCACTCTGCGGTCTATTTCCTaGGAATCCTTCTTCTTGATT +
Preference number: 5 (lower is better)
Translates to: HTGGRGQVSIRHTVSGPTLRSIS*ESFFLI
Trigger: AATCAAGAAGAAGGATTCCAAGGAAATAGACCGCAG...AGTGGGGCCACTCACCGTGTGCCTTATGGAAACTTGTCCTCTACCTCCTGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp GCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACACTTTGCGCAGAAGCTGGTTATaGGTGACTACAAAGTACTTA +
Preference number: 5 (lower is better)
Translates to: AGLHLGNCKHTSDSLDTLRRSWL*VTTKYL
Trigger: TAAGTACTTTGTAGTCACCAATAACCAGCTTCTGCG...CAAAGTGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS TCA 90 bp ATTTCCTTGGAATCCTTCTTCTTGATTTGGCACTTGACATCTGGATaGTCGATGACCTCACACACAGCTACGCAGCTCAGGATCGGGCCA +
Preference number: 5 (lower is better)
Translates to: ISLESFFLIWHLTSG*SMTSHTATQLRIGP
Trigger: TGGCCCGATCCTGAGCTGCGTAGCTGTGTGTGAGGTCATCGATCATCCAGATGTCAAGTGCCAAATCAAGAAGAAGGATTCCAAGGAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS CCA 90 bp TCTTTTCAAACTCTGCCTTCTTGGCACTGTGGATTGTCAGGATCTTaGAGGATAAAATCCAGCTCACCAGGTCCCAGGCCTGTTTGTCTG +
Preference number: 5 (lower is better)
Translates to: SFQTLPSWHCGLSGS*RIKSSSPGPRPVCL
Trigger: CAGACAAACAGGCCTGGGACCTGGTGAGCTGGATTTTATCCTCCAAGATCCTGACAATCCACAGTGCCAAGAAGGCAGAGTTTGAAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp GCCGGCCTCCATCTGGGCAATTGTAAACACACCTCGGACAGCTTGGACACTTTGTTGGAATCCTTCTTCTaGATTTGGCACTTGACATCT +
Preference number: 5 (lower is better)
Translates to: AGLHLGNCKHTSDSLDTLLESFF*IWHLTS
Trigger: AGATGTCAAGTGCCAAATCAAGAAGAAGGATTCCAA...CAAAGTGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp CACACAGGAGGTAGAGGACAAGTTTCCATAAGGCACACGGTGAGTGGCCCCACTTTGGAATCCTTCTTCTaGATTTGGCACTTGACATCT +
Preference number: 5 (lower is better)
Translates to: HTGGRGQVSIRHTVSGPTLESFF*IWHLTS
Trigger: AGATGTCAAGTGCCAAATCAAGAAGAAGGATTCCAA...AGTGGGGCCACTCACCGTGTGCCTTATGGAAACTTGTCCTCTACCTCCTGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp ATAAACACCACAGCAAGGATGGCTGGGCCTCTGCTTACCACTCAACCTCAGGCTCGCAGAAGCTGGTTATaGGTGACTACAAAGTACTTA +
Preference number: 5 (lower is better)
Translates to: INTTARMAGPLLTTQPQARRSWL*VTTKYL
Trigger: TAAGTACTTTGTAGTCACCAATAACCAGCTTCTGCG...AGCCTGAGGTTGAGTGGTAAGCAGAGGCCCAGCCATCCTTGCTGTGGTGTTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
CDS-3UTR CAA 90 bp TCAAAACAAGGCAGTCGCCTAATGATTTATTGTTCCCGTTGCACACATTCTGTCAGGTCCCAGGCCTGTTaGTCTGTGTCTCTGGAAGAC +
Preference number: 5 (lower is better)
Translates to: SKQGSRLMIYCSRCTHSVRSQAC*SVSLED
Trigger: GTCTTCCAGAGACACAGACAAACAGGCCTGGGACCT...GACAGAATGTGTGCAACGGGAACAATAAATCATTAGGCGACTGCCTTGTTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CCA 90 bp CTAGGCGGCTACCATGGAAGGCATAGATTAGGTCTCGTTCTCCTTTaGTCTCATAAAATCTGGAGTTGGCCGGGTCAAAGTACTCAATTT +
Preference number: 5 (lower is better)
Translates to: LGGYHGRHRLGLVLL*SHKIWSWPGQSTQF
Trigger: AAATTGAGTACTTTGACCCGGCCAACTCCAGATTTTATGAGACCAAAGGAGAACGAGACCTAATCTATGCCTTCCATGGTAGCCGCCTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp CAGGACTTTTTCCTTTGGCTCTGGCTGAAGAGCCACCTCCCTAGACTATTTAGGCTGCGGTCTATTTCCTaGGAATCCTTCTTCTTGATT +
Preference number: 5 (lower is better)
Translates to: QDFFLWLWLKSHLPRLFRLRSIS*ESFFLI
Trigger: AATCAAGAAGAAGGATTCCAAGGAAATAGACCGCAG...CCTAAATAGTCTAGGGAGGTGGCTCTTCAGCCAGAGCCAAAGGAAAAAGTCCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS CCA 90 bp CATAGATTAGGTCTCGTTCTCCTTTGGTCTCATAAAATCTGGAGTTaGCCGGGTCAAAGTACTCAATTTCAAATAGGAAATCCGGGGTGG +
Preference number: 5 (lower is better)
Translates to: HRLGLVLLWSHKIWS*PGQSTQFQIGNPGW
Trigger: CCACCCCGGATTTCCTATTTGAAATTGAGTACTTTGACCCGGCCAACTCCAGATTTTATGAGACCAAAGGAGAACGAGACCTAATCTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp TTTTTCCTTTGGCTCTGGCTGAAGAGCCACCTCCCTAGACTATTTAGGAGGAAGTTGGAATCCTTCTTCTaGATTTGGCACTTGACATCT +
Preference number: 5 (lower is better)
Translates to: FFLWLWLKSHLPRLFRRKLESFF*IWHLTS
Trigger: AGATGTCAAGTGCCAAATCAAGAAGAAGGATTCCAA...CTTCCTCCTAAATAGTCTAGGGAGGTGGCTCTTCAGCCAGAGCCAAAGGAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS CCA 90 bp GGAAGGCATAGATTAGGTCTCGTTCTCCTTTGGTCTCATAAAATCTaGAGTTGGCCGGGTCAAAGTACTCAATTTCAAATAGGAAATCCG +
Preference number: 5 (lower is better)
Translates to: GRHRLGLVLLWSHKI*SWPGQSTQFQIGNP
Trigger: CGGATTTCCTATTTGAAATTGAGTACTTTGACCCGGCCAACTCCAGATTTTATGAGACCAAAGGAGAACGAGACCTAATCTATGCCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS-3UTR CAA 90 bp GAGTCAAAACAAGGCAGTCGCCTAATGATTTATTGTTCCCGTTGCACACATTCTTGGATTGTCAGGATCTaGGAGGATAAAATCCAGCTC +
Preference number: 5 (lower is better)
Translates to: ESKQGSRLMIYCSRCTHSWIVRI*EDKIQL
Trigger: GAGCTGGATTTTATCCTCCAAGATCCTGACAATCCA...AGAATGTGTGCAACGGGAACAATAAATCATTAGGCGACTGCCTTGTTTTGACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
CDS-3UTR CAA 90 bp TCAAAACAAGGCAGTCGCCTAATGATTTATTGTTCCCGTTGCACACATTCTGTCCGCAGAAGCTGGTTATaGGTGACTACAAAGTACTTA +
Preference number: 5 (lower is better)
Translates to: SKQGSRLMIYCSRCTHSVRRSWL*VTTKYL
Trigger: TAAGTACTTTGTAGTCACCAATAACCAGCTTCTGCG...GACAGAATGTGTGCAACGGGAACAATAAATCATTAGGCGACTGCCTTGTTTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216702.2
CDS GCA 72 bp CCCGCTTGTAGCTCTGCAGCGCCGAGGCGAAGAGGCTaGAGCGGAGGTCCGCAGCCAGCACGTCGCGGCTCG +
Preference number: 6 (lower is better)
Translates to: PACSSAAPRRRG*SGGPQPARRGS
Trigger: CGAGCCGCGACGTGCTGGCTGCGGACCTCCGCTGCAGCCTCTTCGCCTCGGCGCTGCAGAGCTACAAGCGGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS GCA 72 bp GCAGCGGAGGTCCGCAGCCAGCACGTCGCGGCTCGCTaGCTCCCTGGCTGCTGCCCTGTTGGAGAGCTGCAT +
Preference number: 6 (lower is better)
Translates to: AAEVRSQHVAAR*LPGCCPVGELH
Trigger: ATGCAGCTCTCCAACAGGGCAGCAGCCAGGGAGGCAGCGAGCCGCGACGTGCTGGCTGCGGACCTCCGCTGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CAA 90 bp CTCACACACAGCTACGCAGCTCAGGATCGGGCCAAGAAGGCTATGTaGCCACCCGTGGCCATGAGGACTATAAATGAGGGCCAGGCTCAA +
Preference number: 6 (lower is better)
Translates to: LTHSYAAQDRAKKAM*PPVAMRTINEGQAQ
Trigger: TTGAGCCTGGCCCTCATTTATAGTCCTCATGGCCACGGGTGGCAACATAGCCTTCTTGGCCCGATCCTGAGCTGCGTAGCTGTGTGTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CAA 72 bp AGCTACGCAGCTCAGGATCGGGCCAAGAAGGCTATGTaGCCACCCGTGGCCATGAGGACTATAAATGAGGGC +
Preference number: 6 (lower is better)
Translates to: SYAAQDRAKKAM*PPVAMRTINEG
Trigger: GCCCTCATTTATAGTCCTCATGGCCACGGGTGGCAACATAGCCTTCTTGGCCCGATCCTGAGCTGCGTAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CCA 72 bp CTGTGTCTCTGGAAGACTGTAGAAGTTCCTTCAAGTTaGGTAACCTGCCAGTGTCCGCAAGCAGGGCCTCGA +
Preference number: 6 (lower is better)
Translates to: LCLWKTVEVPSS*VTCQCPQAGPR
Trigger: TCGAGGCCCTGCTTGCGGACACTGGCAGGTTACCCAACTTGAAGGAACTTCTACAGTCTTCCAGAGACACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CAA 72 bp TCTGTGTCTCTGGAAGACTGTAGAAGTTCCTTCAAGTaGGGTAACCTGCCAGTGTCCGCAAGCAGGGCCTCG +
Preference number: 6 (lower is better)
Translates to: SVSLEDCRSSFK*GNLPVSASRAS
Trigger: CGAGGCCCTGCTTGCGGACACTGGCAGGTTACCCAACTTGAAGGAACTTCTACAGTCTTCCAGAGACACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS GCA 72 bp TGGAAGACTGTAGAAGTTCCTTCAAGTTGGGTAACCTaGCAGTGTCCGCAAGCAGGGCCTCGAAGTCCTTAC +
Preference number: 6 (lower is better)
Translates to: WKTVEVPSSWVT*QCPQAGPRSPY
Trigger: GTAAGGACTTCGAGGCCCTGCTTGCGGACACTGGCAGGTTACCCAACTTGAAGGAACTTCTACAGTCTTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CCA 72 bp ACTCTGCCTTCTTGGCACTGTGGATTGTCAGGATCTTaGAGGATAAAATCCAGCTCACCAGGTCCCAGGCCT +
Preference number: 6 (lower is better)
Translates to: TLPSWHCGLSGS*RIKSSSPGPRP
Trigger: AGGCCTGGGACCTGGTGAGCTGGATTTTATCCTCCAAGATCCTGACAATCCACAGTGCCAAGAAGGCAGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CAA 72 bp AACTCTGCCTTCTTGGCACTGTGGATTGTCAGGATCTaGGAGGATAAAATCCAGCTCACCAGGTCCCAGGCC +
Preference number: 6 (lower is better)
Translates to: NSAFLALWIVRI*EDKIQLTRSQA
Trigger: GGCCTGGGACCTGGTGAGCTGGATTTTATCCTCCAAGATCCTGACAATCCACAGTGCCAAGAAGGCAGAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CAA 90 bp GCCTGTTTGTCTGTGTCTCTGGAAGACTGTAGAAGTTCCTTCAAGTaGGGTAACCTGCCAGTGTCCGCAAGCAGGGCCTCGAAGTCCTTA +
Preference number: 6 (lower is better)
Translates to: ACLSVSLEDCRSSFK*GNLPVSASRASKSL
Trigger: TAAGGACTTCGAGGCCCTGCTTGCGGACACTGGCAGGTTACCCAACTTGAAGGAACTTCTACAGTCTTCCAGAGACACAGACAAACAGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS TCA 72 bp AAGTCTTGTTCAGGTGGCAGTGCAGGCCATTGTGAATaGTGGAGTGGAAGTTCTCTAGGCGGCTACCATGGA +
Preference number: 6 (lower is better)
Translates to: KSCSGGSAGHCE*WSGSSLGGYHG
Trigger: TCCATGGTAGCCGCCTAGAGAACTTCCACTCCATCATTCACAATGGCCTGCACTGCCACCTGAACAAGACTT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CAA 90 bp TCAGCTGCTGGATCTTTTCAAACTCTGCCTTCTTGGCACTGTGGATaGTCAGGATCTTGGAGGATAAAATCCAGCTCACCAGGTCCCAGG +
Preference number: 6 (lower is better)
Translates to: SAAGSFQTLPSWHCG*SGSWRIKSSSPGPR
Trigger: CCTGGGACCTGGTGAGCTGGATTTTATCCTCCAAGATCCTGACAATCCACAGTGCCAAGAAGGCAGAGTTTGAAAAGATCCAGCAGCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CAA 90 bp ATCTTTTCAAACTCTGCCTTCTTGGCACTGTGGATTGTCAGGATCTaGGAGGATAAAATCCAGCTCACCAGGTCCCAGGCCTGTTTGTCT +
Preference number: 6 (lower is better)
Translates to: IFSNSAFLALWIVRI*EDKIQLTRSQACLS
Trigger: AGACAAACAGGCCTGGGACCTGGTGAGCTGGATTTTATCCTCCAAGATCCTGACAATCCACAGTGCCAAGAAGGCAGAGTTTGAAAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CCA 72 bp CGGTCAGCTGCTGGATCTTTTCAAACTCTGCCTTCTTaGCACTGTGGATTGTCAGGATCTTGGAGGATAAAA +
Preference number: 6 (lower is better)
Translates to: RSAAGSFQTLPS*HCGLSGSWRIK
Trigger: TTTTATCCTCCAAGATCCTGACAATCCACAGTGCCAAGAAGGCAGAGTTTGAAAAGATCCAGCAGCTGACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CCA 72 bp TACCATGGAAGGCATAGATTAGGTCTCGTTCTCCTTTaGTCTCATAAAATCTGGAGTTGGCCGGGTCAAAGT +
Preference number: 6 (lower is better)
Translates to: YHGRHRLGLVLL*SHKIWSWPGQS
Trigger: ACTTTGACCCGGCCAACTCCAGATTTTATGAGACCAAAGGAGAACGAGACCTAATCTATGCCTTCCATGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CAA 72 bp GGATCTTTTCAAACTCTGCCTTCTTGGCACTGTGGATaGTCAGGATCTTGGAGGATAAAATCCAGCTCACCA +
Preference number: 6 (lower is better)
Translates to: GSFQTLPSWHCG*SGSWRIKSSSP
Trigger: TGGTGAGCTGGATTTTATCCTCCAAGATCCTGACAATCCACAGTGCCAAGAAGGCAGAGTTTGAAAAGATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CAA 72 bp CTACTTCATAGTGAGACTCTGTCCCTTCTTCTTGATTaGGCACTTGACATCTGGATGATCGATGACCTCACA +
Preference number: 6 (lower is better)
Translates to: LLHSETLSLLLD*ALDIWMIDDLT
Trigger: TGTGAGGTCATCGATCATCCAGATGTCAAGTGCCAAATCAAGAAGAAGGGACAGAGTCTCACTATGAAGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216486.2
CDS CCA 72 bp GGTCTCGTTCTCCTTTGGTCTCATAAAATCTGGAGTTaGCCGGGTCAAAGTACTCAATTTCAAATAGGAAAT +
Preference number: 6 (lower is better)
Translates to: GLVLLWSHKIWS*PGQSTQFQIGN
Trigger: ATTTCCTATTTGAAATTGAGTACTTTGACCCGGCCAACTCCAGATTTTATGAGACCAAAGGAGAACGAGACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2
CDS CCA 72 bp AGATTAGGTCTCGTTCTCCTTTGGTCTCATAAAATCTaGAGTTGGCCGGGTCAAAGTACTCAATTTCAAATA +
Preference number: 6 (lower is better)
Translates to: RLGLVLLWSHKI*SWPGQSTQFQI
Trigger: TATTTGAAATTGAGTACTTTGACCCGGCCAACTCCAGATTTTATGAGACCAAAGGAGAACGAGACCTAATCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069000.9
ENSMUST00000213396.2
ENSMUST00000216486.2
ENSMUST00000216702.2